Crash in Qt event loop during recording movie

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.10rc202505160006 (2025-05-16 00:06:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d

Current thread 0x000027ac (most recent call first):
  File "D:\ChimeraX 1.10rc202505160006\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "D:\ChimeraX 1.10rc202505160006\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
  File "D:\ChimeraX 1.10rc202505160006\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
> open F:\data\7qi6_fit_LSU.pdb format pdb

Summary of feedback from opening F:\data\7qi6_fit_LSU.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 GLU B 53 LEU B 63 1 11  
Start residue of secondary structure not found: HELIX 2 2 ASN B 64 HIS B 69 1
6  
Start residue of secondary structure not found: HELIX 3 3 ASN B 74 PHE B 79 1
6  
Start residue of secondary structure not found: HELIX 4 4 SER B 80 ALA B 87 1
8  
Start residue of secondary structure not found: HELIX 5 5 GLY B 96 ARG B 98 1
3  
14 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 20 20 ARG D 284 HIS D 288
1 5  
Start residue of secondary structure not found: HELIX 21 21 HIS D 317 GLY D
328 1 12  
Start residue of secondary structure not found: HELIX 22 22 ASN D 341 GLN D
356 1 16  
Start residue of secondary structure not found: HELIX 23 23 THR D 358 GLY D
367 1 10  
Start residue of secondary structure not found: HELIX 24 24 ARG D 374 GLY D
378 1 5  
Start residue of secondary structure not found: HELIX 25 25 ASP D 407 GLN D
415 1 9  
26 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 52 52 GLY H 150 ASN H 163
1 14  
Start residue of secondary structure not found: HELIX 53 53 PRO H 181 LYS H
185 1 5  
Start residue of secondary structure not found: HELIX 54 54 LYS I 79 ILE I 83
1 5  
Start residue of secondary structure not found: HELIX 55 55 ARG I 118 LYS I
122 1 5  
Start residue of secondary structure not found: HELIX 56 56 THR I 124 LYS I
142 1 19  
Start residue of secondary structure not found: HELIX 57 57 LEU I 159 GLY I
168 1 10  
75 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 133 133 ARG V 105 TYR V
119 1 15  
Start residue of secondary structure not found: HELIX 134 134 ALA V 121 VAL V
130 1 10  
Start residue of secondary structure not found: HELIX 135 135 ASN V 131 GLY V
136 1 6  
Start residue of secondary structure not found: HELIX 136 136 ASP V 140 LYS V
154 1 15  
Start residue of secondary structure not found: HELIX 137 137 ASN V 156 GLU V
171 1 16  
Start residue of secondary structure not found: HELIX 138 138 VAL V 175 LYS V
193 1 19  
121 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 17 1717 ALA D 153 VAL D
154 0  
Start residue of secondary structure not found: SHEET 18 1818 ALA D 158 GLN D
159 0  
Start residue of secondary structure not found: SHEET 19 1919 SER D 202 GLY D
204 0  
Start residue of secondary structure not found: SHEET 20 2020 ASP D 219 THR D
232 0  
Start residue of secondary structure not found: SHEET 21 2121 GLY D 236 GLY D
248 0  
Start residue of secondary structure not found: SHEET 22 2222 ALA D 253 ALA D
261 0  
38 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 61 6161 LEU K 106 SER K
107 0  
Start residue of secondary structure not found: SHEET 62 6262 ILE K 123 ARG K
125 0  
Start residue of secondary structure not found: SHEET 63 6363 LEU M 17 CYS M
26 0  
Start residue of secondary structure not found: SHEET 64 6464 ARG M 29 HIS M
38 0  
Start residue of secondary structure not found: SHEET 65 6565 GLU M 49 TYR M
54 0  
Start residue of secondary structure not found: SHEET 66 6666 GLU M 63 LEU M
68 0  
36 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 103 10310 LEU X 169 GLN X
170 0  
Start residue of secondary structure not found: SHEET 104 10410 PHE X 178 ASP
X 179 0  
Start residue of secondary structure not found: SHEET 105 10510 TYR X 208 VAL
X 209 0  
Start residue of secondary structure not found: SHEET 106 10610 SER X 215 THR
X 216 0  
Start residue of secondary structure not found: SHEET 107 10710 LEU X 258 ASP
X 263 0  
Start residue of secondary structure not found: SHEET 108 10810 GLY X 304 ALA
X 309 0  
16 messages similar to the above omitted  
Cannot find LINK/SSBOND residue G (653 )  
Cannot find LINK/SSBOND residue U (654 )  
Cannot find LINK/SSBOND residue G (664 )  
Cannot find LINK/SSBOND residue U (674 )  
Cannot find LINK/SSBOND residue C (702 )  
221 messages similar to the above omitted  
PDB SEQRES record for chain E is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain F is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain H is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain I is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain J is incomplete. Ignoring input sequence records
as basis for sequence.  
7 messages similar to the above omitted  
  
Chain information for 7qi6_fit_LSU.pdb #1  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
6 | No description available  
7 | No description available  
8 | No description available  
9 | No description available  
A | No description available  
A0 | No description available  
A1 | No description available  
A2 | No description available  
A3 | No description available  
A4 | No description available  
AA | No description available  
AB | No description available  
AC | No description available  
AD | No description available  
AE | No description available  
AF | No description available  
AG | No description available  
AH | No description available  
AI | No description available  
AJ | No description available  
AK | No description available  
AL | No description available  
AM | No description available  
AN | No description available  
AO | No description available  
AP | No description available  
AQ | No description available  
AR | No description available  
AS | No description available  
AT | No description available  
AU | No description available  
AV | No description available  
AW | No description available  
AX | No description available  
AY | No description available  
AZ | No description available  
Aw | No description available  
Ax | No description available  
Az | No description available  
B | No description available  
D | No description available  
E | No description available  
F | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
V | No description available  
W | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t u v y | No description available  
w x | No description available  
z | No description available  
  

> lighting simple

> lighting soft

> lighting full

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting full

> lighting soft

> lighting full

> lighting simple

> lighting full

> lighting soft

> lighting full

> lighting soft

> lighting full

> lighting soft

> lighting full

> movie record

> turn y 2 180

> wait 180


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.10rc202505160006 (2025-05-16)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 537.32
OpenGL renderer: NVIDIA GeForce RTX 4060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_AU.cp936
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: LENOVO
Model: 21J8
OS: Microsoft Windows 11 Pro (Build 22631)
Memory: 68,429,930,496
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i9-13900H
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.3.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.3
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.3
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.6
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202505160006
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.3.5
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5
    traitlets: 5.14.3
    typing_extensions: 4.13.2
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1