'MRCGrid' object has no attribute 'dicom_data'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.1.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119.mrc

Opened job119.mrc as #1, grid size 64,64,64, pixel 8.44, shown at level
0.00353, step 1, values float32  

> ui tool show "Hide Dust"

> surface dust #1 size 50.62

> surface dust #1 size 49.62

> surface dust #1 size 258.96

> surface undust #1

> ui tool show "Segment Map"

Segmenting job119.mrc, density threshold 0.003535  
Showing 7 region surfaces  
97 watershed regions, grouped to 7 regions  
Showing job119.seg - 7 regions, 7 surfaces  
Smoothing and grouping, standard deviation 5 voxels  
No new groups smoothing 5 voxels  
Showing 5 region surfaces  
Got 5 regions after smoothing 6 voxels.  
Segmenting job119.mrc, density threshold 0.003535  
Showing 13 region surfaces  
97 watershed regions, grouped to 13 regions  
Showing job119.seg - 13 regions, 13 surfaces  
Segmenting job119.mrc, density threshold 0.003535  
Showing 7 region surfaces  
97 watershed regions, grouped to 7 regions  
Showing job119.seg - 7 regions, 7 surfaces  

> volume #1 level 0.003679

Ungrouped to 9 regions  
Ungrouped to 10 regions  
Ungrouped to 35 regions  
Ungrouped to 84 regions, but did not show all surfaces, see Options  
Smoothing and grouping, standard deviation 1 voxels  
Showing 41 region surfaces  
Got 41 regions after smoothing 1 voxels.  
Smoothing and grouping, standard deviation 2 voxels  
Showing 18 region surfaces  
Got 18 regions after smoothing 2 voxels.  
Smoothing and grouping, standard deviation 3 voxels  
Showing 13 region surfaces  
Got 13 regions after smoothing 3 voxels.  
Smoothing and grouping, standard deviation 4 voxels  
Showing 7 region surfaces  
Got 7 regions after smoothing 4 voxels.  
Ungrouped to 9 regions  
Showing 13 region surfaces  

> ui mousemode right select

> select #2.6

1 model selected  

> select #2.8

1 model selected  

> select #2.7

1 model selected  

> select add #2.8

2 models selected  

> select add #2.5

3 models selected  

> select add #2.14

4 models selected  

> select add #2.13

5 models selected  

> select add #2.15

6 models selected  

> select add #2.11

7 models selected  
Saving 7 regions to mrc file...  
Opened job119_7_regions.mrc as #3, grid size 23,18,40, pixel 8.44, shown at
step 1, values float32  
Wrote job119_7_regions.mrc  

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119_7_regions.mrc

Opened job119_7_regions.mrc as #1, grid size 23,18,40, pixel 8.44,8.44,8.44,
shown at level 0.00884, step 1, values float32  

> volume #1 level 0.004622

> volume #1 level 0.003701

> volume #1 level 0.002832

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119.mrc

Opened job119.mrc as #1, grid size 64,64,64, pixel 8.44, shown at level
0.00353, step 1, values float32  

> ui tool show "Segment Map"

Segmenting job119.mrc, density threshold 0.003535  
Showing 7 region surfaces  
97 watershed regions, grouped to 7 regions  
Showing job119.seg - 7 regions, 7 surfaces  
Ungrouped to 9 regions  
Ungrouped to 10 regions  
Ungrouped to 35 regions  
Ungrouped to 84 regions, but did not show all surfaces, see Options  
Got 69 regions after grouping by connections  

> ui mousemode right select

> select #2.25

1 model selected  

> select #2.9

1 model selected  

> select #2.34

1 model selected  

> select #2.25

1 model selected  

> select add #2.9

2 models selected  

> select add #2.34

3 models selected  

> select add #2.10

4 models selected  

> select add #2.35

5 models selected  

> select add #2.18

6 models selected  

> select add #2.27

7 models selected  

> select add #2.20

8 models selected  

> select add #2.15

9 models selected  

> select add #2.65

10 models selected  

> select add #2.5

11 models selected  

> select add #2.24

12 models selected  

> select add #2.70

13 models selected  

> select add #2.1

14 models selected  

> select add #2.26

15 models selected  

> select add #2.4

18 models selected  

> select add #2.92

19 models selected  

> select add #2.21

20 models selected  

> select add #2.28

21 models selected  

> select add #2.112

22 models selected  

> select subtract #2.21

21 models selected  

> select add #2.14

22 models selected  

> select add #2.19

23 models selected  

> select add #2.114

24 models selected  

> select add #2.22

25 models selected  
Saving 23 regions to mrc file...  
Opened job119_23_regions.mrc as #3, grid size 23,16,40, pixel 8.44, shown at
step 1, values float32  
Wrote job119_23_regions.mrc  

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119_23_regions.mrc

Opened job119_23_regions.mrc as #1, grid size 23,16,40, pixel 8.44,8.44,8.44,
shown at level 0.00891, step 1, values float32  

> volume #1 level 0.002694

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119.mrc

Opened job119.mrc as #1, grid size 64,64,64, pixel 8.44, shown at level
0.00353, step 1, values float32  

> volume #1 level 0.004159

> select #1

2 models selected  

> select #1

2 models selected  

> select #1

2 models selected  

> ui mousemode right select

> select #1

2 models selected  

> ui mousemode right select

> select #1

2 models selected  

> ui tool show "Segment Map"

Segmenting job119.mrc, density threshold 0.004159  
Showing 7 region surfaces  
71 watershed regions, grouped to 7 regions  
Showing job119.seg - 7 regions, 7 surfaces  

> ui mousemode right select

> select #2.1

1 model selected  

> select #2.2

1 model selected  

> select add #2.1

2 models selected  

> select add #2.4

3 models selected  
Saving 3 regions to mrc file...  
Opened job119_3_regions.mrc as #3, grid size 28,16,38, pixel 8.44, shown at
step 1, values float32  
Wrote job119_3_regions.mrc  

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-fila/job119_3_regions.mrc

Opened job119_3_regions.mrc as #1, grid size 28,16,38, pixel 8.44,8.44,8.44,
shown at level 0.00879, step 1, values float32  

> volume #1 level 0.0007597

> ui tool show "Segment Map"

Segmenting job119_3_regions.mrc, density threshold 0.000760  
Showing 1 region surfaces  
40 watershed regions, grouped to 1 regions  
Showing job119_3_regions.seg - 1 regions, 1 surfaces  
Segmenting job119_3_regions.mrc, density threshold 0.000760  
Showing 4 region surfaces  
40 watershed regions, grouped to 4 regions  
Showing job119_3_regions.seg - 4 regions, 4 surfaces  
Segmenting job119_3_regions.mrc, density threshold 0.000760  
Showing 8 region surfaces  
40 watershed regions, grouped to 8 regions  
Showing job119_3_regions.seg - 8 regions, 8 surfaces  
Segmenting job119_3_regions.mrc, density threshold 0.000760  
Showing 18 region surfaces  
40 watershed regions, grouped to 18 regions  
Showing job119_3_regions.seg - 18 regions, 18 surfaces  

> select #2.16

1 model selected  

> select #2.7

1 model selected  

> select add #2.16

2 models selected  

> select add #2.13

3 models selected  

> select add #2.9

4 models selected  

> select add #2.3

5 models selected  

> select add #2.6

6 models selected  

> select add #2.8

7 models selected  

> select add #2.2

8 models selected  

> select add #2.17

9 models selected  

> select add #2.14

10 models selected  

> select add #2.10

11 models selected  

> select add #2.1

12 models selected  

> select add #2.11

13 models selected  

> select add #2.4

14 models selected  

> select add #2.12

15 models selected  

> select add #2.15

16 models selected  

> select add #2.5

17 models selected  
Saving 17 regions to mrc file...  
Opened job119_3_regions_17_regions.mrc as #3, grid size 23,16,38, pixel
8.44,8.44,8.44, shown at step 1, values float32  
Wrote job119_3_regions_17_regions.mrc  

> close session

> open /Users/shujuncai/Downloads/RIBEYE/relion5_bi-
> fila/job119_3_regions_17_regions.mrc

Opened job119_3_regions_17_regions.mrc as #1, grid size 23,16,38, pixel
8.44,8.44,8.44, shown at level 0.00906, step 1, values float32  

> volume #1 level 0.001128

> volume #1 level 0.002348

> volume #1 level 0.004374

> volume #1 level 0.00221

> ui tool show Segmentations

> ui view fourup

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
AttributeError: 'MRCGrid' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Macmini9,1
      Model Number: Z12P000KLLL/A
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 11881.41.5
      OS Loader Version: 11881.41.5

Software:

    System Software Overview:

      System Version: macOS 15.1.1 (24B91)
      Kernel Version: Darwin 24.1.0
      Time since boot: 14 days, 18 hours, 24 minutes

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Studio Display:
          Display Type: Retina LCD
          Resolution: 5120 x 2880 Retina
          Display Serial Number: WX6Y34M7TP
          Display Firmware Version: Version 17.0 (Build 21A329)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13