Opened 7 years ago

Closed 7 years ago

#1810 closed defect (fixed)

Morph: ValueError: models have different number of chains

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Structure Comparison Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-03-26)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.9 (2019-03-26)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/lijuanyin/project/dim1/figures/90s.cif

Summary of feedback from opening /Users/lijuanyin/project/dim1/figures/90s.cif  
---  
warnings | Unknown polymer entity '.' near line 29  
Skipping residue with duplicate label_seq_id 8 in chain D3  
Skipping residue with duplicate label_seq_id 13 in chain D3  
Skipping residue with duplicate label_seq_id 15 in chain D3  
Skipping residue with duplicate label_seq_id 17 in chain D3  
Skipping residue with duplicate label_seq_id 19 in chain D3  
851 messages similar to the above omitted  
Missing entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for 90s.cif #1  
---  
Chain | Description  
CA | No description available  
CB | No description available  
CD | No description available  
CE | No description available  
CF CG | No description available  
CH | No description available  
CI | No description available  
CJ | No description available  
CK | No description available  
CL | No description available  
CM | No description available  
CN | No description available  
D2 | No description available  
D3 | No description available  
D4 | No description available  
DA | No description available  
DE | No description available  
DF | No description available  
DG | No description available  
DH | No description available  
DI | No description available  
DJ | No description available  
DL | No description available  
DN | No description available  
DO | No description available  
DQ | No description available  
DS | No description available  
DT | No description available  
DW | No description available  
DX | No description available  
DY | No description available  
Db | No description available  
Dc | No description available  
JD | No description available  
JF | No description available  
JG | No description available  
JH | No description available  
JI | No description available  
JJ | No description available  
JL | No description available  
JM | No description available  
JP | No description available  
UA | No description available  
UB | No description available  
UC | No description available  
UD | No description available  
UE | No description available  
UF | No description available  
UG | No description available  
UH | No description available  
UI | No description available  
UJ | No description available  
UK | No description available  
UL | No description available  
UM | No description available  
UN | No description available  
UO | No description available  
UP | No description available  
UQ | No description available  
UR | No description available  
US | No description available  
UT | No description available  
UU | No description available  
UV | No description available  
UX | No description available  
  

> open
/Users/lijuanyin/project/dim1/combin_all/ctf_join_all_2/postprocess_masked.mrc

Opened postprocess_masked.mrc, grid size 480,480,480, pixel 1.08, shown at
level 0.0171, step 2, values float32  

> volume #2 step 1 level 0.015

> surface dust #2 size 10

> set bgColor white

> lighting full

> hide #1

> color #1 #2 "light gray"

> color #1/UA /UF /UL /UM /UR /UU "cornflower blue"

> color #1/UD /UE /UH /UI /UJ /UO /UQ /UY tomato

> color #1/UV /CN "light blue"

> color #1/UB /US /JF /JG /JH "hot pink"

> color #1/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange

> color #1 /CL /CM purple

> color #1 /UT "sky blue"

> color #1/JD gold

> color #1 /JL lime

> color #1/CI /CJ /CK blue

> color #1/D3:1-607 #1/DE /DG /DI /DJ /DR /DX /DY orchid

> color #1/D3:608-1133 #1/DA /DC /DH /DN /DO /DW /Db orange

> color #1/D3:1133-2000 #1/DF /DQ /DS /Dc cyan

> color #1/UN /JP /UG "deep pink"

> color #1 /UX "forest green"

> color #1 /JJ red

> windowsize 600 800

> set silhouettes true

> color zone #2 near #1 distance 6

> open /Users/lijuanyin/project/dim1/figures/statee.cif

Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statee.cif  
---  
warnings | skipping chem_comp category: Missing column 'type' near line 48  
Unknown polymer entity '?' near line 170  
Missing entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for statee.cif #3  
---  
Chain | Description  
A | No description available  
C | No description available  
CJ | No description available  
CK | No description available  
CL | No description available  
CM | No description available  
D3 | No description available  
D4 | No description available  
DF | No description available  
DQ | No description available  
DS | No description available  
DT | No description available  
DX | No description available  
Dc | No description available  
F | No description available  
H | No description available  
I | No description available  
J | No description available  
JD | No description available  
JF | No description available  
JG | No description available  
JH | No description available  
JJ | No description available  
JL | No description available  
K | No description available  
M | No description available  
O | No description available  
P | No description available  
UB | No description available  
UC | No description available  
UN | No description available  
US | No description available  
UX | No description available  
X | No description available  
Z | No description available  
c | No description available  
  

> open /Users/lijuanyin/project/dim1/figures/statee.mrc

Opened statee.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.00481,
step 2, values float32  

> hide #3

> volume #2 hide

> surface dust #4 size 10

> volume #4 step 1 level 0.01

> surface dust #4 size 10

> color #3 #4 "light gray"

> color #3 /A:1-607 /H /Z /J /M /F /K /DX orchid

> color #3 /A:608-1122 /I /c /X /O /C /P orange

> color #3 /D3:1123-1900 /DF /DQ /DS /Dc cyan

> color #3 /UV /CN "light blue"

> color #3 /UB /US /JF /JG /JH "hot pink"

> color #3 /CL /CM purple

> color #3 /UT "sky blue"

> color #3 /JD gold

> color #3 /JL lime

> color #3/CI /CJ /CK blue

> color #3 /UX "forest green"

> color #3 /JJ red

> color #3 /UN "dodger blue"

> color #3 /D4 "sky blue"

> color zone #4 near #3 distance 6

> hide #!3 models

> show #!3 models

> show #3 target a

> close #3

> open /Users/lijuanyin/project/dim1/figures/statee.cif

Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statee.cif  
---  
warnings | skipping chem_comp category: Missing column 'type' near line 48  
Unknown polymer entity '?' near line 170  
Missing entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for statee.cif #3  
---  
Chain | Description  
A | No description available  
C | No description available  
CJ | No description available  
CK | No description available  
CL | No description available  
CM | No description available  
D3 | No description available  
D4 | No description available  
DF | No description available  
DQ | No description available  
DS | No description available  
DT | No description available  
DX | No description available  
Dc | No description available  
F | No description available  
H | No description available  
I | No description available  
J | No description available  
JD | No description available  
JF | No description available  
JG | No description available  
JH | No description available  
JJ | No description available  
JL | No description available  
K | No description available  
M | No description available  
O | No description available  
P | No description available  
UB | No description available  
UC | No description available  
UN | No description available  
US | No description available  
UX | No description available  
X | No description available  
Z | No description available  
c | No description available  
  

> hide #3

> color #3 #4 "light gray"

> color #3 /A:1-607 /H /Z /J /M /F /K /DX orchid

> color #3 /A:608-1122 /I /c /X /O /C /P orange

> color #3 /D3:1123-1900 /DF /DQ /DS /Dc cyan

> color #3 /UV /CN "light blue"

> color #3 /UB /US /JF /JG /JH "hot pink"

> color #3 /CL /CM purple

> color #3 /UT "sky blue"

> color #3 /JD gold

> color #3 /JL lime

> color #3/CI /CJ /CK blue

> color #3 /UX "forest green"

> color #3 /JJ red

> color #3 /UN "dodger blue"

> color #3 /D4 "sky blue"

> color zone #4 near #3 distance 6

> open /Users/lijuanyin/project/dim1/figures/stated.cif

Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/stated.cif  
---  
warnings | Unknown polymer entity '.' near line 29  
Skipping residue with duplicate label_seq_id 2 in chain D4  
Skipping residue with duplicate label_seq_id 4 in chain D4  
Skipping residue with duplicate label_seq_id 6 in chain D4  
Skipping residue with duplicate label_seq_id 8 in chain D4  
Skipping residue with duplicate label_seq_id 10 in chain D4  
595 messages similar to the above omitted  
Missing entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for stated.cif #5  
---  
Chain | Description  
CI | No description available  
CJ | No description available  
CK | No description available  
CL | No description available  
CM | No description available  
D3 | No description available  
D4 | No description available  
DA | No description available  
DE | No description available  
DF | No description available  
DG | No description available  
DH | No description available  
DI | No description available  
DJ | No description available  
DL | No description available  
DN | No description available  
DO | No description available  
DQ | No description available  
DS | No description available  
DT | No description available  
DW | No description available  
DX | No description available  
DY | No description available  
Db | No description available  
Dc | No description available  
JD | No description available  
JF | No description available  
JG | No description available  
JH | No description available  
JJ | No description available  
JL | No description available  
UA | No description available  
UB | No description available  
UC | No description available  
UL | No description available  
UM | No description available  
US | No description available  
UU | No description available  
  

> open /Users/lijuanyin/project/dim1/figures/stated.mrc

Opened stated.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.00735,
step 2, values float32  

> hide #5

> volume #4 hide

> surface dust #6 size 10

> volume #6 step 1 level 0.005

> color #5 #6 "light gray"

> color #5/UA /UF /UL /UM /UR /UU "cornflower blue"

> color #5/UD /UE /UH /UI /UJ /UO /UQ /UY tomato

> color #5/UV /CN "light blue"

> color #5/UB /US /JF /JG /JH "hot pink"

> color #5/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange

> color #5 /CL /CM purple

> color #5 /UT "sky blue"

> color #5/JD gold

> color #5 /JL lime

> color #5/CI /CJ /CK blue

> color #5/D3:1-607 #5/DE /DG /DI /DJ /DR /DX /DY /DL orchid

> color #5/D3:608-1133 #5/DA /DC /DH /DN /DO /DW /Db orange

> color #5/D3:1133-2000 #5/DF /DQ /DS /Dc cyan

> color #5/UN /JP /UG "deep pink"

> color #5 /UX "forest green"

> color #5 /JJ red

> color zone #6 near #5 distance 8

> open /Users/lijuanyin/project/dim1/figures/statea.cif

Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statea.cif  
---  
warnings | skipping chem_comp category: Missing column 'type' near line 78  
Unknown polymer entity '?' near line 194  
Missing entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for statea.cif #7  
---  
Chain | Description  
CA | No description available  
CB | No description available  
CD | No description available  
CE | No description available  
CF CG | No description available  
CH | No description available  
CI | No description available  
CJ | No description available  
CK | No description available  
CL | No description available  
CM | No description available  
CN | No description available  
D2 | No description available  
D3 | No description available  
D4 | No description available  
DA | No description available  
DE | No description available  
DF | No description available  
DG | No description available  
DH | No description available  
DI | No description available  
DJ | No description available  
DN | No description available  
DO | No description available  
DQ | No description available  
DS | No description available  
DW | No description available  
DX | No description available  
DY | No description available  
Db | No description available  
Dc | No description available  
JA | No description available  
JB | No description available  
JC | No description available  
JE | No description available  
JF | No description available  
JG | No description available  
JH | No description available  
JI | No description available  
JJ | No description available  
JK | No description available  
JM | No description available  
JO | No description available  
JP | No description available  
UA | No description available  
UB | No description available  
UC | No description available  
UD | No description available  
UE | No description available  
UF | No description available  
UG | No description available  
UH | No description available  
UI | No description available  
UJ | No description available  
UK | No description available  
UL | No description available  
UM | No description available  
UN | No description available  
UO | No description available  
UP | No description available  
UQ | No description available  
UR | No description available  
US | No description available  
UT | No description available  
UU | No description available  
UV | No description available  
UX | No description available  
UZ | No description available  
  

> open /Users/lijuanyin/project/dim1/figures/statea.mrc

Opened statea.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.0109,
step 2, values float32  

> hide #7

> volume #6 hide

> surface dust #8 size 10

> volume #8 step 1 level 0.005

> color #7 #8 "light gray"

> color #7/UA /UF /UL /UM /UR /UU "cornflower blue"

> color #7/UD /UE /UH /UI /UJ /UO /UQ /UY tomato

> color #7/UV /CN "light blue"

> color #7/UB /US /JF /JG /JH "hot pink"

> color #7/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange

> color #7 /CL /CM purple

> color #7 /UT "sky blue"

> color #7/JD gold

> color #7 /JL lime

> color #7/CI /CJ /CK blue

> color #7/D3:1-607 #7/DE /DG /DI /DJ /DR /DX /DY /DL orchid

> color #7/D3:608-1133 #7/DA /DC /DH /DN /DO /DW /Db orange

> color #7/D3:1133-2000 #7/DF /DQ /DS /Dc cyan

> color #7/UN /JP /UG "deep pink"

> color #7 /UX "forest green"

> color #7 /JJ red

> color #7 /D2 yellow

> color #7 /JA /JB /JC /JE /JK "forest green"

> color zone #8 near #7 distance 12

> save /Users/lijuanyin/project/dim1/figures/statea_view2.png supersample 3

> open /Users/lijuanyin/project/dim1/figures/statec.mrc

Opened statec.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.0089,
step 2, values float32  

> volume #8 hide

> surface dust #9 size 10

> volume #9 step 1 level 0.005

> color #9 "light gray"

> color zone #9 near #1 distance 12

> view matrix camera
0.6981,-0.30057,-0.64986,-125.01,0.71458,0.2354,0.65876,671.01,-0.045022,-0.92425,0.37911,506.34

> save /Users/lijuanyin/project/dim1/figures/statea_view2.png supersample 3

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie1.mp4

Movie saved to /Users/lijuanyin/Desktop/movie1.mp4  
  

> view matrix camera
0.1234,0.082235,-0.98894,-366.89,-0.95854,0.26781,-0.097339,216.41,0.25684,0.95995,0.11188,323.76

> windowsize 600 800

> ui mousemode rightMode zoom

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie2.mp4

Movie saved to /Users/lijuanyin/Desktop/movie2.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie3.mp4

Movie saved to /Users/lijuanyin/Desktop/movie3.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie4.mp4

Movie saved to /Users/lijuanyin/Desktop/movie4.mp4  
  

> view matrix

camera position:
-0.31895,-0.098123,-0.94268,-485.79,-0.92844,0.23218,0.28996,485.86,0.19042,0.9677,-0.16515,121.22  
model positions:
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,1,0,0,0,0,1,0,0,0,0,1,0,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,1,0,0,0,0,1,0,0,0,0,1,0,#6.1,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0,#7.1,1,0,0,0,0,1,0,0,0,0,1,0,#8,1,0,0,0,0,1,0,0,0,0,1,0,#8.1,1,0,0,0,0,1,0,0,0,0,1,0,#9,1,0,0,0,0,1,0,0,0,0,1,0,#9.1,1,0,0,0,0,1,0,0,0,0,1,0  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie4.mp4

Movie saved to /Users/lijuanyin/Desktop/movie4.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie5.mp4

Movie saved to /Users/lijuanyin/Desktop/movie5.mp4  
  

> turn y 90

> turn y 90

> turn y 90

> turn y 90

> view matrix camera
-0.31895,-0.098123,-0.94268,-485.79,-0.92844,0.23218,0.28996,485.86,0.19042,0.9677,-0.16515,121.22

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie6.mp4

Movie saved to /Users/lijuanyin/Desktop/movie6.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/lijuanyin/Desktop/movie7.mp4

Movie saved to /Users/lijuanyin/Desktop/movie7.mp4  
  

> save /Users/lijuanyin/Desktop/image1.png supersample 3

> morph #2,8

Require at least 2 structures for morph  

> morph #2, 8

Require at least 2 structures for morph  

Missing or invalid "structures" argument: only initial part "#2" of atom
specifier valid  

Missing or invalid "structures" argument: only initial part "#1" of atom
specifier valid  

> morph #1, 7

Traceback (most recent call last):  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 110, in interpolate  
results = segment.segmentHingeExact(sm, m, cf, mhs, log=log)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 94, in segmentHingeExact  
raise ValueError("models have different number of chains")  
ValueError: models have different number of chains  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 253, in execute  
cmd.run(cmd_text)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2616, in run  
result = ci.function(session, **kw_args)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/morph.py", line 70, in morph  
color_segments = color_segments, color_core = color_core)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 25, in compute_morph  
res_groups = motion.interpolate(mol, res_interp)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 112, in interpolate  
results = segment.segmentHingeApproximate(sm, m, cf, mhs, log=log)  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 144, in segmentHingeApproximate  
len(m1seqs), ','.join(str(c) for c in m1seqs)))  
ValueError: models have different number of chains, 66 (Morph - 90s.cif
#/CA,Morph - 90s.cif #/CB,Morph - 90s.cif #/CD,Morph - 90s.cif #/CE,Morph -
90s.cif #/CF,Morph - 90s.cif #/CG,Morph - 90s.cif #/CH,Morph - 90s.cif
#/CI,Morph - 90s.cif #/CJ,Morph - 90s.cif #/CK,Morph - 90s.cif #/CL,Morph -
90s.cif #/CM,Morph - 90s.cif #/CN,Morph - 90s.cif #/D2,Morph - 90s.cif
#/D3,Morph - 90s.cif #/D4,Morph - 90s.cif #/DA,Morph - 90s.cif #/DE,Morph -
90s.cif #/DF,Morph - 90s.cif #/DG,Morph - 90s.cif #/DH,Morph - 90s.cif
#/DI,Morph - 90s.cif #/DJ,Morph - 90s.cif #/DL,Morph - 90s.cif #/DN,Morph -
90s.cif #/DO,Morph - 90s.cif #/DQ,Morph - 90s.cif #/DS,Morph - 90s.cif
#/DT,Morph - 90s.cif #/DW,Morph - 90s.cif #/DX,Morph - 90s.cif #/DY,Morph -
90s.cif #/Db,Morph - 90s.cif #/Dc,Morph - 90s.cif #/JD,Morph - 90s.cif
#/JF,Morph - 90s.cif #/JG,Morph - 90s.cif #/JH,Morph - 90s.cif #/JI,Morph -
90s.cif #/JJ,Morph - 90s.cif #/JL,Morph - 90s.cif #/JM,Morph - 90s.cif
#/JP,Morph - 90s.cif #/UA,Morph - 90s.cif #/UB,Morph - 90s.cif #/UC,Morph -
90s.cif #/UD,Morph - 90s.cif #/UE,Morph - 90s.cif #/UF,Morph - 90s.cif
#/UG,Morph - 90s.cif #/UH,Morph - 90s.cif #/UI,Morph - 90s.cif #/UJ,Morph -
90s.cif #/UK,Morph - 90s.cif #/UL,Morph - 90s.cif #/UM,Morph - 90s.cif
#/UN,Morph - 90s.cif #/UO,Morph - 90s.cif #/UP,Morph - 90s.cif #/UQ,Morph -
90s.cif #/UR,Morph - 90s.cif #/US,Morph - 90s.cif #/UT,Morph - 90s.cif
#/UU,Morph - 90s.cif #/UV,Morph - 90s.cif #/UX) and 69 (statea.cif
#7/CA,statea.cif #7/CB,statea.cif #7/CD,statea.cif #7/CE,statea.cif
#7/CF,statea.cif #7/CG,statea.cif #7/CH,statea.cif #7/CI,statea.cif
#7/CJ,statea.cif #7/CK,statea.cif #7/CL,statea.cif #7/CM,statea.cif
#7/CN,statea.cif #7/D2,statea.cif #7/D3,statea.cif #7/D4,statea.cif
#7/DA,statea.cif #7/DE,statea.cif #7/DF,statea.cif #7/DG,statea.cif
#7/DH,statea.cif #7/DI,statea.cif #7/DJ,statea.cif #7/DN,statea.cif
#7/DO,statea.cif #7/DQ,statea.cif #7/DS,statea.cif #7/DW,statea.cif
#7/DX,statea.cif #7/DY,statea.cif #7/Db,statea.cif #7/Dc,statea.cif
#7/JA,statea.cif #7/JB,statea.cif #7/JC,statea.cif #7/JE,statea.cif
#7/JF,statea.cif #7/JG,statea.cif #7/JH,statea.cif #7/JI,statea.cif
#7/JJ,statea.cif #7/JK,statea.cif #7/JM,statea.cif #7/JO,statea.cif
#7/JP,statea.cif #7/UA,statea.cif #7/UB,statea.cif #7/UC,statea.cif
#7/UD,statea.cif #7/UE,statea.cif #7/UF,statea.cif #7/UG,statea.cif
#7/UH,statea.cif #7/UI,statea.cif #7/UJ,statea.cif #7/UK,statea.cif
#7/UL,statea.cif #7/UM,statea.cif #7/UN,statea.cif #7/UO,statea.cif
#7/UP,statea.cif #7/UQ,statea.cif #7/UR,statea.cif #7/US,statea.cif
#7/UT,statea.cif #7/UU,statea.cif #7/UV,statea.cif #7/UX,statea.cif #7/UZ)  
  
ValueError: models have different number of chains, 66 (Morph - 90s.cif
#/CA,Morph - 90s.cif #/CB,Morph - 90s.cif #/CD,Morph - 90s.cif #/CE,Morph -
90s.cif #/CF,Morph - 90s.cif #/CG,Morph - 90s.cif #/CH,Morph - 90s.cif
#/CI,Morph - 90s.cif #/CJ,Morph - 90s.cif #/CK,Morph - 90s.cif #/CL,Morph -
90s.cif #/CM,Morph - 90s.cif #/CN,Morph - 90s.cif #/D2,Morph - 90s.cif
#/D3,Morph - 90s.cif #/D4,Morph - 90s.cif #/DA,Morph - 90s.cif #/DE,Morph -
90s.cif #/DF,Morph - 90s.cif #/DG,Morph - 90s.cif #/DH,Morph - 90s.cif
#/DI,Morph - 90s.cif #/DJ,Morph - 90s.cif #/DL,Morph - 90s.cif #/DN,Morph -
90s.cif #/DO,Morph - 90s.cif #/DQ,Morph - 90s.cif #/DS,Morph - 90s.cif
#/DT,Morph - 90s.cif #/DW,Morph - 90s.cif #/DX,Morph - 90s.cif #/DY,Morph -
90s.cif #/Db,Morph - 90s.cif #/Dc,Morph - 90s.cif #/JD,Morph - 90s.cif
#/JF,Morph - 90s.cif #/JG,Morph - 90s.cif #/JH,Morph - 90s.cif #/JI,Morph -
90s.cif #/JJ,Morph - 90s.cif #/JL,Morph - 90s.cif #/JM,Morph - 90s.cif
#/JP,Morph - 90s.cif #/UA,Morph - 90s.cif #/UB,Morph - 90s.cif #/UC,Morph -
90s.cif #/UD,Morph - 90s.cif #/UE,Morph - 90s.cif #/UF,Morph - 90s.cif
#/UG,Morph - 90s.cif #/UH,Morph - 90s.cif #/UI,Morph - 90s.cif #/UJ,Morph -
90s.cif #/UK,Morph - 90s.cif #/UL,Morph - 90s.cif #/UM,Morph - 90s.cif
#/UN,Morph - 90s.cif #/UO,Morph - 90s.cif #/UP,Morph - 90s.cif #/UQ,Morph -
90s.cif #/UR,Morph - 90s.cif #/US,Morph - 90s.cif #/UT,Morph - 90s.cif
#/UU,Morph - 90s.cif #/UV,Morph - 90s.cif #/UX) and 69 (statea.cif
#7/CA,statea.cif #7/CB,statea.cif #7/CD,statea.cif #7/CE,statea.cif
#7/CF,statea.cif #7/CG,statea.cif #7/CH,statea.cif #7/CI,statea.cif
#7/CJ,statea.cif #7/CK,statea.cif #7/CL,statea.cif #7/CM,statea.cif
#7/CN,statea.cif #7/D2,statea.cif #7/D3,statea.cif #7/D4,statea.cif
#7/DA,statea.cif #7/DE,statea.cif #7/DF,statea.cif #7/DG,statea.cif
#7/DH,statea.cif #7/DI,statea.cif #7/DJ,statea.cif #7/DN,statea.cif
#7/DO,statea.cif #7/DQ,statea.cif #7/DS,statea.cif #7/DW,statea.cif
#7/DX,statea.cif #7/DY,statea.cif #7/Db,statea.cif #7/Dc,statea.cif
#7/JA,statea.cif #7/JB,statea.cif #7/JC,statea.cif #7/JE,statea.cif
#7/JF,statea.cif #7/JG,statea.cif #7/JH,statea.cif #7/JI,statea.cif
#7/JJ,statea.cif #7/JK,statea.cif #7/JM,statea.cif #7/JO,statea.cif
#7/JP,statea.cif #7/UA,statea.cif #7/UB,statea.cif #7/UC,statea.cif
#7/UD,statea.cif #7/UE,statea.cif #7/UF,statea.cif #7/UG,statea.cif
#7/UH,statea.cif #7/UI,statea.cif #7/UJ,statea.cif #7/UK,statea.cif
#7/UL,statea.cif #7/UM,statea.cif #7/UN,statea.cif #7/UO,statea.cif
#7/UP,statea.cif #7/UQ,statea.cif #7/UR,statea.cif #7/US,statea.cif
#7/UT,statea.cif #7/UU,statea.cif #7/UV,statea.cif #7/UX,statea.cif #7/UZ)  
  
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 144, in segmentHingeApproximate  
len(m1seqs), ','.join(str(c) for c in m1seqs)))  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-2.4.9
OpenGL renderer: AMD Radeon Pro 455 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (2)

comment:1 by Eric Pettersen, 7 years ago

Component: Unassigned → Structure Comparison
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Morph: ValueError: models have different number of chains

Perhaps a LimitationError would be more appropriate?

comment:2 by Tom Goddard, 7 years ago

Resolution: → fixed
Status: assigned → closed

Made morph with different numbers of chains generate a UserError and no traceback.

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