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Opened 7 years ago
Closed 6 years ago
#1810 closed defect (fixed)
Morph: ValueError: models have different number of chains
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-03-26)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 0.9 (2019-03-26)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/project/dim1/figures/90s.cif
Summary of feedback from opening /Users/lijuanyin/project/dim1/figures/90s.cif
---
warnings | Unknown polymer entity '.' near line 29
Skipping residue with duplicate label_seq_id 8 in chain D3
Skipping residue with duplicate label_seq_id 13 in chain D3
Skipping residue with duplicate label_seq_id 15 in chain D3
Skipping residue with duplicate label_seq_id 17 in chain D3
Skipping residue with duplicate label_seq_id 19 in chain D3
851 messages similar to the above omitted
Missing entity_poly_seq table. Inferred polymer connectivity.
Chain information for 90s.cif #1
---
Chain | Description
CA | No description available
CB | No description available
CD | No description available
CE | No description available
CF CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
D2 | No description available
D3 | No description available
D4 | No description available
DA | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DL | No description available
DN | No description available
DO | No description available
DQ | No description available
DS | No description available
DT | No description available
DW | No description available
DX | No description available
DY | No description available
Db | No description available
Dc | No description available
JD | No description available
JF | No description available
JG | No description available
JH | No description available
JI | No description available
JJ | No description available
JL | No description available
JM | No description available
JP | No description available
UA | No description available
UB | No description available
UC | No description available
UD | No description available
UE | No description available
UF | No description available
UG | No description available
UH | No description available
UI | No description available
UJ | No description available
UK | No description available
UL | No description available
UM | No description available
UN | No description available
UO | No description available
UP | No description available
UQ | No description available
UR | No description available
US | No description available
UT | No description available
UU | No description available
UV | No description available
UX | No description available
> open
/Users/lijuanyin/project/dim1/combin_all/ctf_join_all_2/postprocess_masked.mrc
Opened postprocess_masked.mrc, grid size 480,480,480, pixel 1.08, shown at
level 0.0171, step 2, values float32
> volume #2 step 1 level 0.015
> surface dust #2 size 10
> set bgColor white
> lighting full
> hide #1
> color #1 #2 "light gray"
> color #1/UA /UF /UL /UM /UR /UU "cornflower blue"
> color #1/UD /UE /UH /UI /UJ /UO /UQ /UY tomato
> color #1/UV /CN "light blue"
> color #1/UB /US /JF /JG /JH "hot pink"
> color #1/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange
> color #1 /CL /CM purple
> color #1 /UT "sky blue"
> color #1/JD gold
> color #1 /JL lime
> color #1/CI /CJ /CK blue
> color #1/D3:1-607 #1/DE /DG /DI /DJ /DR /DX /DY orchid
> color #1/D3:608-1133 #1/DA /DC /DH /DN /DO /DW /Db orange
> color #1/D3:1133-2000 #1/DF /DQ /DS /Dc cyan
> color #1/UN /JP /UG "deep pink"
> color #1 /UX "forest green"
> color #1 /JJ red
> windowsize 600 800
> set silhouettes true
> color zone #2 near #1 distance 6
> open /Users/lijuanyin/project/dim1/figures/statee.cif
Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statee.cif
---
warnings | skipping chem_comp category: Missing column 'type' near line 48
Unknown polymer entity '?' near line 170
Missing entity_poly_seq table. Inferred polymer connectivity.
Chain information for statee.cif #3
---
Chain | Description
A | No description available
C | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
D3 | No description available
D4 | No description available
DF | No description available
DQ | No description available
DS | No description available
DT | No description available
DX | No description available
Dc | No description available
F | No description available
H | No description available
I | No description available
J | No description available
JD | No description available
JF | No description available
JG | No description available
JH | No description available
JJ | No description available
JL | No description available
K | No description available
M | No description available
O | No description available
P | No description available
UB | No description available
UC | No description available
UN | No description available
US | No description available
UX | No description available
X | No description available
Z | No description available
c | No description available
> open /Users/lijuanyin/project/dim1/figures/statee.mrc
Opened statee.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.00481,
step 2, values float32
> hide #3
> volume #2 hide
> surface dust #4 size 10
> volume #4 step 1 level 0.01
> surface dust #4 size 10
> color #3 #4 "light gray"
> color #3 /A:1-607 /H /Z /J /M /F /K /DX orchid
> color #3 /A:608-1122 /I /c /X /O /C /P orange
> color #3 /D3:1123-1900 /DF /DQ /DS /Dc cyan
> color #3 /UV /CN "light blue"
> color #3 /UB /US /JF /JG /JH "hot pink"
> color #3 /CL /CM purple
> color #3 /UT "sky blue"
> color #3 /JD gold
> color #3 /JL lime
> color #3/CI /CJ /CK blue
> color #3 /UX "forest green"
> color #3 /JJ red
> color #3 /UN "dodger blue"
> color #3 /D4 "sky blue"
> color zone #4 near #3 distance 6
> hide #!3 models
> show #!3 models
> show #3 target a
> close #3
> open /Users/lijuanyin/project/dim1/figures/statee.cif
Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statee.cif
---
warnings | skipping chem_comp category: Missing column 'type' near line 48
Unknown polymer entity '?' near line 170
Missing entity_poly_seq table. Inferred polymer connectivity.
Chain information for statee.cif #3
---
Chain | Description
A | No description available
C | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
D3 | No description available
D4 | No description available
DF | No description available
DQ | No description available
DS | No description available
DT | No description available
DX | No description available
Dc | No description available
F | No description available
H | No description available
I | No description available
J | No description available
JD | No description available
JF | No description available
JG | No description available
JH | No description available
JJ | No description available
JL | No description available
K | No description available
M | No description available
O | No description available
P | No description available
UB | No description available
UC | No description available
UN | No description available
US | No description available
UX | No description available
X | No description available
Z | No description available
c | No description available
> hide #3
> color #3 #4 "light gray"
> color #3 /A:1-607 /H /Z /J /M /F /K /DX orchid
> color #3 /A:608-1122 /I /c /X /O /C /P orange
> color #3 /D3:1123-1900 /DF /DQ /DS /Dc cyan
> color #3 /UV /CN "light blue"
> color #3 /UB /US /JF /JG /JH "hot pink"
> color #3 /CL /CM purple
> color #3 /UT "sky blue"
> color #3 /JD gold
> color #3 /JL lime
> color #3/CI /CJ /CK blue
> color #3 /UX "forest green"
> color #3 /JJ red
> color #3 /UN "dodger blue"
> color #3 /D4 "sky blue"
> color zone #4 near #3 distance 6
> open /Users/lijuanyin/project/dim1/figures/stated.cif
Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/stated.cif
---
warnings | Unknown polymer entity '.' near line 29
Skipping residue with duplicate label_seq_id 2 in chain D4
Skipping residue with duplicate label_seq_id 4 in chain D4
Skipping residue with duplicate label_seq_id 6 in chain D4
Skipping residue with duplicate label_seq_id 8 in chain D4
Skipping residue with duplicate label_seq_id 10 in chain D4
595 messages similar to the above omitted
Missing entity_poly_seq table. Inferred polymer connectivity.
Chain information for stated.cif #5
---
Chain | Description
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
D3 | No description available
D4 | No description available
DA | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DL | No description available
DN | No description available
DO | No description available
DQ | No description available
DS | No description available
DT | No description available
DW | No description available
DX | No description available
DY | No description available
Db | No description available
Dc | No description available
JD | No description available
JF | No description available
JG | No description available
JH | No description available
JJ | No description available
JL | No description available
UA | No description available
UB | No description available
UC | No description available
UL | No description available
UM | No description available
US | No description available
UU | No description available
> open /Users/lijuanyin/project/dim1/figures/stated.mrc
Opened stated.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.00735,
step 2, values float32
> hide #5
> volume #4 hide
> surface dust #6 size 10
> volume #6 step 1 level 0.005
> color #5 #6 "light gray"
> color #5/UA /UF /UL /UM /UR /UU "cornflower blue"
> color #5/UD /UE /UH /UI /UJ /UO /UQ /UY tomato
> color #5/UV /CN "light blue"
> color #5/UB /US /JF /JG /JH "hot pink"
> color #5/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange
> color #5 /CL /CM purple
> color #5 /UT "sky blue"
> color #5/JD gold
> color #5 /JL lime
> color #5/CI /CJ /CK blue
> color #5/D3:1-607 #5/DE /DG /DI /DJ /DR /DX /DY /DL orchid
> color #5/D3:608-1133 #5/DA /DC /DH /DN /DO /DW /Db orange
> color #5/D3:1133-2000 #5/DF /DQ /DS /Dc cyan
> color #5/UN /JP /UG "deep pink"
> color #5 /UX "forest green"
> color #5 /JJ red
> color zone #6 near #5 distance 8
> open /Users/lijuanyin/project/dim1/figures/statea.cif
Summary of feedback from opening
/Users/lijuanyin/project/dim1/figures/statea.cif
---
warnings | skipping chem_comp category: Missing column 'type' near line 78
Unknown polymer entity '?' near line 194
Missing entity_poly_seq table. Inferred polymer connectivity.
Chain information for statea.cif #7
---
Chain | Description
CA | No description available
CB | No description available
CD | No description available
CE | No description available
CF CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
D2 | No description available
D3 | No description available
D4 | No description available
DA | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DN | No description available
DO | No description available
DQ | No description available
DS | No description available
DW | No description available
DX | No description available
DY | No description available
Db | No description available
Dc | No description available
JA | No description available
JB | No description available
JC | No description available
JE | No description available
JF | No description available
JG | No description available
JH | No description available
JI | No description available
JJ | No description available
JK | No description available
JM | No description available
JO | No description available
JP | No description available
UA | No description available
UB | No description available
UC | No description available
UD | No description available
UE | No description available
UF | No description available
UG | No description available
UH | No description available
UI | No description available
UJ | No description available
UK | No description available
UL | No description available
UM | No description available
UN | No description available
UO | No description available
UP | No description available
UQ | No description available
UR | No description available
US | No description available
UT | No description available
UU | No description available
UV | No description available
UX | No description available
UZ | No description available
> open /Users/lijuanyin/project/dim1/figures/statea.mrc
Opened statea.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.0109,
step 2, values float32
> hide #7
> volume #6 hide
> surface dust #8 size 10
> volume #8 step 1 level 0.005
> color #7 #8 "light gray"
> color #7/UA /UF /UL /UM /UR /UU "cornflower blue"
> color #7/UD /UE /UH /UI /UJ /UO /UQ /UY tomato
> color #7/UV /CN "light blue"
> color #7/UB /US /JF /JG /JH "hot pink"
> color #7/CA /CB /CC /CD /CE /CF /CG /CH /D4 orange
> color #7 /CL /CM purple
> color #7 /UT "sky blue"
> color #7/JD gold
> color #7 /JL lime
> color #7/CI /CJ /CK blue
> color #7/D3:1-607 #7/DE /DG /DI /DJ /DR /DX /DY /DL orchid
> color #7/D3:608-1133 #7/DA /DC /DH /DN /DO /DW /Db orange
> color #7/D3:1133-2000 #7/DF /DQ /DS /Dc cyan
> color #7/UN /JP /UG "deep pink"
> color #7 /UX "forest green"
> color #7 /JJ red
> color #7 /D2 yellow
> color #7 /JA /JB /JC /JE /JK "forest green"
> color zone #8 near #7 distance 12
> save /Users/lijuanyin/project/dim1/figures/statea_view2.png supersample 3
> open /Users/lijuanyin/project/dim1/figures/statec.mrc
Opened statec.mrc, grid size 480,480,480, pixel 1.08, shown at level 0.0089,
step 2, values float32
> volume #8 hide
> surface dust #9 size 10
> volume #9 step 1 level 0.005
> color #9 "light gray"
> color zone #9 near #1 distance 12
> view matrix camera
0.6981,-0.30057,-0.64986,-125.01,0.71458,0.2354,0.65876,671.01,-0.045022,-0.92425,0.37911,506.34
> save /Users/lijuanyin/project/dim1/figures/statea_view2.png supersample 3
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie1.mp4
Movie saved to /Users/lijuanyin/Desktop/movie1.mp4
> view matrix camera
0.1234,0.082235,-0.98894,-366.89,-0.95854,0.26781,-0.097339,216.41,0.25684,0.95995,0.11188,323.76
> windowsize 600 800
> ui mousemode rightMode zoom
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie2.mp4
Movie saved to /Users/lijuanyin/Desktop/movie2.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie3.mp4
Movie saved to /Users/lijuanyin/Desktop/movie3.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie4.mp4
Movie saved to /Users/lijuanyin/Desktop/movie4.mp4
> view matrix
camera position:
-0.31895,-0.098123,-0.94268,-485.79,-0.92844,0.23218,0.28996,485.86,0.19042,0.9677,-0.16515,121.22
model positions:
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,1,0,0,0,0,1,0,0,0,0,1,0,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,1,0,0,0,0,1,0,0,0,0,1,0,#6.1,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0,#7.1,1,0,0,0,0,1,0,0,0,0,1,0,#8,1,0,0,0,0,1,0,0,0,0,1,0,#8.1,1,0,0,0,0,1,0,0,0,0,1,0,#9,1,0,0,0,0,1,0,0,0,0,1,0,#9.1,1,0,0,0,0,1,0,0,0,0,1,0
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie4.mp4
Movie saved to /Users/lijuanyin/Desktop/movie4.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie5.mp4
Movie saved to /Users/lijuanyin/Desktop/movie5.mp4
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> view matrix camera
-0.31895,-0.098123,-0.94268,-485.79,-0.92844,0.23218,0.28996,485.86,0.19042,0.9677,-0.16515,121.22
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie6.mp4
Movie saved to /Users/lijuanyin/Desktop/movie6.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lijuanyin/Desktop/movie7.mp4
Movie saved to /Users/lijuanyin/Desktop/movie7.mp4
> save /Users/lijuanyin/Desktop/image1.png supersample 3
> morph #2,8
Require at least 2 structures for morph
> morph #2, 8
Require at least 2 structures for morph
Missing or invalid "structures" argument: only initial part "#2" of atom
specifier valid
Missing or invalid "structures" argument: only initial part "#1" of atom
specifier valid
> morph #1, 7
Traceback (most recent call last):
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 110, in interpolate
results = segment.segmentHingeExact(sm, m, cf, mhs, log=log)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 94, in segmentHingeExact
raise ValueError("models have different number of chains")
ValueError: models have different number of chains
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 253, in execute
cmd.run(cmd_text)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2616, in run
result = ci.function(session, **kw_args)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/morph.py", line 70, in morph
color_segments = color_segments, color_core = color_core)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 25, in compute_morph
res_groups = motion.interpolate(mol, res_interp)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/motion.py", line 112, in interpolate
results = segment.segmentHingeApproximate(sm, m, cf, mhs, log=log)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 144, in segmentHingeApproximate
len(m1seqs), ','.join(str(c) for c in m1seqs)))
ValueError: models have different number of chains, 66 (Morph - 90s.cif
#/CA,Morph - 90s.cif #/CB,Morph - 90s.cif #/CD,Morph - 90s.cif #/CE,Morph -
90s.cif #/CF,Morph - 90s.cif #/CG,Morph - 90s.cif #/CH,Morph - 90s.cif
#/CI,Morph - 90s.cif #/CJ,Morph - 90s.cif #/CK,Morph - 90s.cif #/CL,Morph -
90s.cif #/CM,Morph - 90s.cif #/CN,Morph - 90s.cif #/D2,Morph - 90s.cif
#/D3,Morph - 90s.cif #/D4,Morph - 90s.cif #/DA,Morph - 90s.cif #/DE,Morph -
90s.cif #/DF,Morph - 90s.cif #/DG,Morph - 90s.cif #/DH,Morph - 90s.cif
#/DI,Morph - 90s.cif #/DJ,Morph - 90s.cif #/DL,Morph - 90s.cif #/DN,Morph -
90s.cif #/DO,Morph - 90s.cif #/DQ,Morph - 90s.cif #/DS,Morph - 90s.cif
#/DT,Morph - 90s.cif #/DW,Morph - 90s.cif #/DX,Morph - 90s.cif #/DY,Morph -
90s.cif #/Db,Morph - 90s.cif #/Dc,Morph - 90s.cif #/JD,Morph - 90s.cif
#/JF,Morph - 90s.cif #/JG,Morph - 90s.cif #/JH,Morph - 90s.cif #/JI,Morph -
90s.cif #/JJ,Morph - 90s.cif #/JL,Morph - 90s.cif #/JM,Morph - 90s.cif
#/JP,Morph - 90s.cif #/UA,Morph - 90s.cif #/UB,Morph - 90s.cif #/UC,Morph -
90s.cif #/UD,Morph - 90s.cif #/UE,Morph - 90s.cif #/UF,Morph - 90s.cif
#/UG,Morph - 90s.cif #/UH,Morph - 90s.cif #/UI,Morph - 90s.cif #/UJ,Morph -
90s.cif #/UK,Morph - 90s.cif #/UL,Morph - 90s.cif #/UM,Morph - 90s.cif
#/UN,Morph - 90s.cif #/UO,Morph - 90s.cif #/UP,Morph - 90s.cif #/UQ,Morph -
90s.cif #/UR,Morph - 90s.cif #/US,Morph - 90s.cif #/UT,Morph - 90s.cif
#/UU,Morph - 90s.cif #/UV,Morph - 90s.cif #/UX) and 69 (statea.cif
#7/CA,statea.cif #7/CB,statea.cif #7/CD,statea.cif #7/CE,statea.cif
#7/CF,statea.cif #7/CG,statea.cif #7/CH,statea.cif #7/CI,statea.cif
#7/CJ,statea.cif #7/CK,statea.cif #7/CL,statea.cif #7/CM,statea.cif
#7/CN,statea.cif #7/D2,statea.cif #7/D3,statea.cif #7/D4,statea.cif
#7/DA,statea.cif #7/DE,statea.cif #7/DF,statea.cif #7/DG,statea.cif
#7/DH,statea.cif #7/DI,statea.cif #7/DJ,statea.cif #7/DN,statea.cif
#7/DO,statea.cif #7/DQ,statea.cif #7/DS,statea.cif #7/DW,statea.cif
#7/DX,statea.cif #7/DY,statea.cif #7/Db,statea.cif #7/Dc,statea.cif
#7/JA,statea.cif #7/JB,statea.cif #7/JC,statea.cif #7/JE,statea.cif
#7/JF,statea.cif #7/JG,statea.cif #7/JH,statea.cif #7/JI,statea.cif
#7/JJ,statea.cif #7/JK,statea.cif #7/JM,statea.cif #7/JO,statea.cif
#7/JP,statea.cif #7/UA,statea.cif #7/UB,statea.cif #7/UC,statea.cif
#7/UD,statea.cif #7/UE,statea.cif #7/UF,statea.cif #7/UG,statea.cif
#7/UH,statea.cif #7/UI,statea.cif #7/UJ,statea.cif #7/UK,statea.cif
#7/UL,statea.cif #7/UM,statea.cif #7/UN,statea.cif #7/UO,statea.cif
#7/UP,statea.cif #7/UQ,statea.cif #7/UR,statea.cif #7/US,statea.cif
#7/UT,statea.cif #7/UU,statea.cif #7/UV,statea.cif #7/UX,statea.cif #7/UZ)
ValueError: models have different number of chains, 66 (Morph - 90s.cif
#/CA,Morph - 90s.cif #/CB,Morph - 90s.cif #/CD,Morph - 90s.cif #/CE,Morph -
90s.cif #/CF,Morph - 90s.cif #/CG,Morph - 90s.cif #/CH,Morph - 90s.cif
#/CI,Morph - 90s.cif #/CJ,Morph - 90s.cif #/CK,Morph - 90s.cif #/CL,Morph -
90s.cif #/CM,Morph - 90s.cif #/CN,Morph - 90s.cif #/D2,Morph - 90s.cif
#/D3,Morph - 90s.cif #/D4,Morph - 90s.cif #/DA,Morph - 90s.cif #/DE,Morph -
90s.cif #/DF,Morph - 90s.cif #/DG,Morph - 90s.cif #/DH,Morph - 90s.cif
#/DI,Morph - 90s.cif #/DJ,Morph - 90s.cif #/DL,Morph - 90s.cif #/DN,Morph -
90s.cif #/DO,Morph - 90s.cif #/DQ,Morph - 90s.cif #/DS,Morph - 90s.cif
#/DT,Morph - 90s.cif #/DW,Morph - 90s.cif #/DX,Morph - 90s.cif #/DY,Morph -
90s.cif #/Db,Morph - 90s.cif #/Dc,Morph - 90s.cif #/JD,Morph - 90s.cif
#/JF,Morph - 90s.cif #/JG,Morph - 90s.cif #/JH,Morph - 90s.cif #/JI,Morph -
90s.cif #/JJ,Morph - 90s.cif #/JL,Morph - 90s.cif #/JM,Morph - 90s.cif
#/JP,Morph - 90s.cif #/UA,Morph - 90s.cif #/UB,Morph - 90s.cif #/UC,Morph -
90s.cif #/UD,Morph - 90s.cif #/UE,Morph - 90s.cif #/UF,Morph - 90s.cif
#/UG,Morph - 90s.cif #/UH,Morph - 90s.cif #/UI,Morph - 90s.cif #/UJ,Morph -
90s.cif #/UK,Morph - 90s.cif #/UL,Morph - 90s.cif #/UM,Morph - 90s.cif
#/UN,Morph - 90s.cif #/UO,Morph - 90s.cif #/UP,Morph - 90s.cif #/UQ,Morph -
90s.cif #/UR,Morph - 90s.cif #/US,Morph - 90s.cif #/UT,Morph - 90s.cif
#/UU,Morph - 90s.cif #/UV,Morph - 90s.cif #/UX) and 69 (statea.cif
#7/CA,statea.cif #7/CB,statea.cif #7/CD,statea.cif #7/CE,statea.cif
#7/CF,statea.cif #7/CG,statea.cif #7/CH,statea.cif #7/CI,statea.cif
#7/CJ,statea.cif #7/CK,statea.cif #7/CL,statea.cif #7/CM,statea.cif
#7/CN,statea.cif #7/D2,statea.cif #7/D3,statea.cif #7/D4,statea.cif
#7/DA,statea.cif #7/DE,statea.cif #7/DF,statea.cif #7/DG,statea.cif
#7/DH,statea.cif #7/DI,statea.cif #7/DJ,statea.cif #7/DN,statea.cif
#7/DO,statea.cif #7/DQ,statea.cif #7/DS,statea.cif #7/DW,statea.cif
#7/DX,statea.cif #7/DY,statea.cif #7/Db,statea.cif #7/Dc,statea.cif
#7/JA,statea.cif #7/JB,statea.cif #7/JC,statea.cif #7/JE,statea.cif
#7/JF,statea.cif #7/JG,statea.cif #7/JH,statea.cif #7/JI,statea.cif
#7/JJ,statea.cif #7/JK,statea.cif #7/JM,statea.cif #7/JO,statea.cif
#7/JP,statea.cif #7/UA,statea.cif #7/UB,statea.cif #7/UC,statea.cif
#7/UD,statea.cif #7/UE,statea.cif #7/UF,statea.cif #7/UG,statea.cif
#7/UH,statea.cif #7/UI,statea.cif #7/UJ,statea.cif #7/UK,statea.cif
#7/UL,statea.cif #7/UM,statea.cif #7/UN,statea.cif #7/UO,statea.cif
#7/UP,statea.cif #7/UQ,statea.cif #7/UR,statea.cif #7/US,statea.cif
#7/UT,statea.cif #7/UU,statea.cif #7/UV,statea.cif #7/UX,statea.cif #7/UZ)
File "/Applications/ChimeraX
3.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/morph/segment.py", line 144, in segmentHingeApproximate
len(m1seqs), ','.join(str(c) for c in m1seqs)))
See log for complete Python traceback.
OpenGL version: 4.1 ATI-2.4.9
OpenGL renderer: AMD Radeon Pro 455 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 7 years ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Morph: ValueError: models have different number of chains |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Made morph with different numbers of chains generate a UserError and no traceback.
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Perhaps a LimitationError would be more appropriate?