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Opened 4 months ago
Closed 4 months ago
#18029 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-14.6.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Thread 0x0000000330207000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032f1fb000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032e1ef000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032d1e3000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032c1d7000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032b1cb000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032a1bf000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003291b3000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003281a7000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032719b000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000032618f000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000325183000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000324177000 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001ed874f40 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group, PIL._webp, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize (total: 62)
{"app_name":"ChimeraX","timestamp":"2025-06-18 17:57:10.00 -0400","app_version":"1.9.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.9.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.6.1 (23G93)","roots_installed":0,"name":"ChimeraX","incident_id":"209C77BB-F90C-47DD-A8B2-4B2585B80809"}
{
"uptime" : 180000,
"procRole" : "Background",
"version" : 2,
"userID" : 22932962,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 9558,
"osVersion" : {
"train" : "macOS 14.6.1",
"build" : "23G93",
"releaseType" : "User"
},
"captureTime" : "2025-06-18 17:41:57.0364 -0400",
"codeSigningMonitor" : 1,
"incident" : "209C77BB-F90C-47DD-A8B2-4B2585B80809",
"pid" : 85053,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-06-16 13:33:43.6793 -0400",
"procStartAbsTime" : 1990071419270,
"procExitAbsTime" : 4347569783778,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"8A4B3275-AD84-582D-886A-542ADD500640","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "52E8BCBB-0ECD-E76A-418B-CCE1EDC18AAE",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRd+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWzg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 20789,
"sleepWakeUUID" : "F1D57851-F3F8-4E45-AB12-6BEA00B82A54",
"sip" : "enabled",
"vmRegionInfo" : "0x4303ad556cb8 is not in any region. Bytes after previous region: 73202035682489 Bytes before following region: 31870044246856\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000c303ad556cb8","rawCodes":[1,214420560374968],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000c303ad556cb8 -> 0x00004303ad556cb8 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":85053},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0x4303ad556cb8 is not in any region. Bytes after previous region: 73202035682489 Bytes before following region: 31870044246856\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6102827336},{"value":99},{"value":95},{"value":4611791571578101888},{"value":4507050298},{"value":10111808529500855308},{"value":10111808534106510156},{"value":14757395258967641293},{"value":4294967286},{"value":6102827266},{"value":0},{"value":54},{"value":4294967280},{"value":328},{"value":8455152872},{"value":0},{"value":11},{"value":8280035136,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8280035360,"symbolLocation":224,"symbol":"_main_thread"},{"value":1},{"value":4387128880,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":8285609984,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSCGSStatusItem._selectedContentFrame"},{"value":8285609984,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSCGSStatusItem._selectedContentFrame"},{"value":7},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6536977440},"cpsr":{"value":1073745920},"fp":{"value":6102827408},"sp":{"value":6102827376},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6536746480,"matchesCrashFrame":1},"far":{"value":0}},"id":1082447,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":38384,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":166},{"imageOffset":27680,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":167},{"imageOffset":262624,"symbol":"raise","symbolLocation":32,"imageIndex":168},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":164},{"imageOffset":17796,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":169},{"imageOffset":349344,"imageIndex":96},{"imageOffset":349160,"imageIndex":96},{"imageOffset":380316,"symbol":"_NSViewHierarchyDidChangeBackingProperties","symbolLocation":244,"imageIndex":170},{"imageOffset":11486732,"symbol":"-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]","symbolLocation":192,"imageIndex":170},{"imageOffset":2095464,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":448,"imageIndex":170},{"imageOffset":510204,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":170},{"imageOffset":2095004,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":170},{"imageOffset":515532,"symbol":"-[NSWindow _setFrameCommon:display:fromServer:]","symbolLocation":1856,"imageIndex":170},{"imageOffset":11458836,"symbol":"-[NSWindow(NSScreenLayout) _setFrame:fromAdjustmentToScreen:anchorIfNeeded:animate:]","symbolLocation":592,"imageIndex":170},{"imageOffset":3274684,"symbol":"-[NSWindow _adjustWindowToScreen]","symbolLocation":1100,"imageIndex":170},{"imageOffset":3405156,"symbol":"-[NSWindow 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"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "7b2022b2f25c961f38ce693701f8925bec3daa9e",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "65a8173205d942272410674b",
"factorPackIds" : {
"SIRI_HOME_AUTOMATION_SERVER_FLOW_DEPRECATION" : "65d39fa4cb0e2417d11ce5f6"
},
"deploymentId" : 240000001
},
{
"rolloutId" : "64628732bf2f5257dedc8988",
"factorPackIds" : {
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"deploymentId" : 240000001
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],
"experiments" : [
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}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/rslack/Downloads/EBV_Uma15.pdb
EBV_Uma15.pdb title:
Displayed atoms Displayed atoms - prepared [more info...]
Chain information for EBV_Uma15.pdb #1
---
Chain | Description
A | No description available
D | No description available
E | No description available
Non-standard residues in EBV_Uma15.pdb #1
---
C_15 — (C_15)
MG — (MG)
Computing secondary structure
> lighting soft
> set bgColor white
> select /D
326 atoms, 348 bonds, 10 residues, 1 model selected
> nucleotides sel slab
> hide sel cartoons
> show sel cartoons
> nucleotides sel fill
> select /D
326 atoms, 348 bonds, 10 residues, 1 model selected
> nucleotides sel fill
> nucleotides sel atoms
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> nucleotides sel atoms
> select ::name="MG"
1 atom, 1 residue, 1 model selected
> style sel sphere
Changed 1 atom style
> style sel sphere
Changed 1 atom style
> style sel ball
Changed 1 atom style
> style sel sphere
Changed 1 atom style
> color sel byhetero
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> color sel #009051ff
> color sel byhetero
> ui tool show H-Bonds
> hbonds sel restrict cross twoColors true intraMol false intraRes false
> select true reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 EBV_Uma15.pdb
10 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A SER 65 N /B C_15 1 O2G /A SER 65 H 2.948 2.164
/A SER 65 OG /B C_15 1 O2G /A SER 65 HG 3.371 2.525
/A LEU 66 N /B C_15 1 O1B /A LEU 66 H 3.049 2.038
/A ARG 132 NH1 /B C_15 1 O2G /A ARG 132 HH12 2.652 1.588
/A ARG 132 NH2 /B C_15 1 O1G /A ARG 132 HH22 2.739 1.690
/A LYS 159 NZ /B C_15 1 O1G /A LYS 159 HZ3 2.667 1.640
/A LYS 159 NZ /B C_15 1 O2A /A LYS 159 HZ2 2.741 1.765
/A ASN 163 ND2 /B C_15 1 O2B /A ASN 163 HD22 2.589 1.539
/B C_15 1 N2 /D DT 2 O1 /B C_15 1 H2_1 3.040 2.053
/D DT 2 N3 /B C_15 1 N1 /D DT 2 HN3 2.769 1.758
10 hydrogen bonds found
7 strict hydrogen bonds found
> select H
3973 atoms, 491 residues, 1 model selected
> hide sel atoms
> undo
> select /A
7429 atoms, 7506 bonds, 472 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /D
Alignment identifier is 1/D
> sequence chain /E
Alignment identifier is 1/E
> ui tool show "Side View"
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 40 atom styles
> style sel stick
Changed 40 atom styles
> toolshed show
> select pbonds : select pbonds
16 pseudobonds, 2 models selected
> pbonds radius 2
Unknown command: pbonds radius 2
> select pbonds radius 2
Expected a keyword
> select pbonds radius -2
Expected a keyword
> size pbonds radius -0.15
Expected a keyword
> size pbonds
> size pbonds -0.15
Expected a keyword
> size pbonds -radius 0.15
Expected a keyword
> select pbonds
16 pseudobonds, 2 models selected
> select pbonds size 0.2
Expected a keyword
> select pbonds radius 0.2
Expected a keyword
> pseudobondsRadius 0.2
Unknown command: pseudobondsRadius 0.2
> pseudobondRadius 0.2
Unknown command: pseudobondRadius 0.2
> style pbonds radius 0.2
Expected a keyword
> style pseudobonds radius 0.2
Expected a keyword
> style pbonds Radius 0.2
Expected a keyword
> style pbonds -radius 0.2
Expected a keyword
> size pbonds radius 0.2
Expected a keyword
> style pseudobonds radius 0.2
Expected a keyword
> style pbonds radius 0.2
Expected a keyword
> size pseudobondRadius 0.2
Changed 16 pseudobond radii
> size pseudobondRadius 0.15
Changed 16 pseudobond radii
> select clear
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds.tif
> width 936 height 666 supersample 4
> select /D
326 atoms, 348 bonds, 10 residues, 1 model selected
> color sel blue
> color sel cyan
> color sel byhetero
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> color sel magenta
> color sel byhetero
> hide #1.1 models
> hide #1.2 models
> show #1.2 models
> show #1.1 models
> select /D
326 atoms, 348 bonds, 10 residues, 1 model selected
> color sel magenta
> color sel byhetero
> select /D
326 atoms, 348 bonds, 10 residues, 1 model selected
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> color sel cyan
> color sel byhetero
> select /A:67
21 atoms, 21 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:166
21 atoms, 21 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:160
11 atoms, 10 bonds, 1 residue, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select /A:68
14 atoms, 14 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:234
14 atoms, 13 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select /A:64
10 atoms, 9 bonds, 1 residue, 1 model selected
> select /A:66
19 atoms, 18 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> select clear
> select H
3973 atoms, 491 residues, 1 model selected
> hide sel atoms
> undo
> hide sel cartoons
> undo
> hide sel atoms
> undo
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> hide #1.1 models
> hide #1.2 models
> show #1.2 models
> show #1.1 models
> select clear
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds.tif
> width 1942 height 1332 supersample 4
> lighting soft
> select /A
7429 atoms, 7506 bonds, 472 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> select add #1.3
7429 atoms, 7506 bonds, 472 residues, 4 models selected
> select add #1
8064 atoms, 8185 bonds, 16 pseudobonds, 492 residues, 6 models selected
> select subtract #1
1 model selected
> select add #1.3
7429 atoms, 472 residues, 3 models selected
> color (#!1 & sel) #f6d7acff
> color (#!1 & sel) #f6d7ac0d
> color (#!1 & sel) #f6d7ac80
> hide sel surfaces
> ui tool show "Color Actions"
> color sel tan
> color sel dark khaki
> undo
> select clear
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds.tif
> width 971 height 666 supersample 4
> open /Users/rslack/Downloads/8oj6.cif
8oj6.cif title:
HSV-1 DNA polymerase-processivity factor complex in pre-translocation state
[more info...]
Chain information for 8oj6.cif #2
---
Chain | Description | UniProt
A | DNA polymerase catalytic subunit | DPOL_HHV11 1-1235
B | DNA polymerase processivity factor | PAP_HHV11 1-488
C | DNA (22-MER) |
D | DNA (48-MER) |
Non-standard residues in 8oj6.cif #2
---
MG — magnesium ion
> ui tool show Matchmaker
> matchmaker #!2 to #1/A pairing bs verbose true reportMatrix true
> showAlignment true
Computing secondary structure
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker EBV_Uma15.pdb, chain A (#1) with 8oj6.cif, chain A (#2), sequence
alignment score = 1224.3
Alignment identifier is 1
Chains used in RMSD evaluation for alignment 1: EBV_Uma15.pdb #1/A, 8oj6.cif
#2/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Alignment matrix in structure 8oj6.cif coordinates
Matrix rotation and translation
0.59949995 0.24603368 -0.76162145 -4.69655171
-0.43857128 -0.69502305 -0.56973519 270.63209148
-0.66951851 0.67558152 -0.30876298 39.70281385
Axis 0.87447604 -0.06467577 -0.48073766
Axis point 0.00000000 130.32567151 82.66114707
Rotation angle (degrees) 134.59919423
Shift along axis -40.69699765
RMSD between 309 pruned atom pairs is 0.922 angstroms; (across all 453 pairs:
3.306)
Sequences:
EBV_Uma15.pdb, chain A
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IPCRRVLDDGQQIRVFSCLLAAAQKENFILP...............MPSASDRD..................................GYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYSTMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAETVTLQGRTMLERAKAFVEA..LSPANLQALAP.SPDAWAPLNPEGQLRVIYGDTDSLFIECRGFSESETLRFADALAAHTTRSLFVAPISLEAEKTFSCLMLITKKRYVGVLTDGKTLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLSHRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPHLAVYQKFVERNEELPQIHDRIQYVFV................................................EPKGGV...KGARKTEMAEDPAYAERHGVPVAVDHYFDKLLQGAANILQCL...........................................................
8oj6.cif, chain A
MFSGGGGPLSPGGKSAARAASGFFAPAGPRGASRGPPPCLRQNFYNPYLAPVGTQQKPTGPTQRHTYYSECDEFRFIAPRVLDEDAPPEKRAGVHDGHLKRAPKVYCGGDERDVLRVGSGGFWPRRSRLWGGVDHAPAGFNPTVTVFHVYDILENVEHAYGMRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSL..RADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRI.PQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAP.GPY.SMRIIYGDTDSIFVLCRGLTAAGLTAVGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGGKMLIKGVDLVRKNNCAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSPADPPGGASKPRKLLVSELAEDPAYAIAHGVALNTDYYFSHLLGAACVTFKALFGNNAKITESLLKRFIPEVWHPPDDVAARLRTAGFGAVGAGATAEETRRMLHRAFDTLA
Residues:
EBV_Uma15.pdb #1/A ILE 1, EBV_Uma15.pdb #1/A PRO 2, EBV_Uma15.pdb #1/A CYS 3,
EBV_Uma15.pdb #1/A ARG 4, EBV_Uma15.pdb #1/A ARG 5, EBV_Uma15.pdb #1/A VAL 6,
EBV_Uma15.pdb #1/A LEU 7, EBV_Uma15.pdb #1/A ASP 8, EBV_Uma15.pdb #1/A ASP 9,
EBV_Uma15.pdb #1/A GLY 10, EBV_Uma15.pdb #1/A GLN 11, EBV_Uma15.pdb #1/A GLN
12, EBV_Uma15.pdb #1/A ILE 13, EBV_Uma15.pdb #1/A ARG 14, EBV_Uma15.pdb #1/A
VAL 15, EBV_Uma15.pdb #1/A PHE 16, EBV_Uma15.pdb #1/A SER 17, EBV_Uma15.pdb
#1/A CYS 18, EBV_Uma15.pdb #1/A LEU 19, EBV_Uma15.pdb #1/A LEU 20,
EBV_Uma15.pdb #1/A ALA 21, EBV_Uma15.pdb #1/A ALA 22, EBV_Uma15.pdb #1/A ALA
23, EBV_Uma15.pdb #1/A GLN 24, EBV_Uma15.pdb #1/A LYS 25, EBV_Uma15.pdb #1/A
GLU 26, EBV_Uma15.pdb #1/A ASN 27, EBV_Uma15.pdb #1/A PHE 28, EBV_Uma15.pdb
#1/A ILE 29, EBV_Uma15.pdb #1/A LEU 30, EBV_Uma15.pdb #1/A PRO 31,
EBV_Uma15.pdb #1/A MET 32, EBV_Uma15.pdb #1/A PRO 33, EBV_Uma15.pdb #1/A SER
34, EBV_Uma15.pdb #1/A ALA 35, EBV_Uma15.pdb #1/A SER 36, EBV_Uma15.pdb #1/A
ASP 37, EBV_Uma15.pdb #1/A ARG 38, EBV_Uma15.pdb #1/A ASP 39, EBV_Uma15.pdb
#1/A GLY 40, EBV_Uma15.pdb #1/A TYR 41, EBV_Uma15.pdb #1/A GLN 42,
EBV_Uma15.pdb #1/A GLY 43, EBV_Uma15.pdb #1/A ALA 44, EBV_Uma15.pdb #1/A THR
45, EBV_Uma15.pdb #1/A VAL 46, EBV_Uma15.pdb #1/A ILE 47, EBV_Uma15.pdb #1/A
GLN 48, EBV_Uma15.pdb #1/A PRO 49, EBV_Uma15.pdb #1/A LEU 50, EBV_Uma15.pdb
#1/A SER 51, EBV_Uma15.pdb #1/A GLY 52, EBV_Uma15.pdb #1/A PHE 53,
EBV_Uma15.pdb #1/A TYR 54, EBV_Uma15.pdb #1/A ASN 55, EBV_Uma15.pdb #1/A SER
56, EBV_Uma15.pdb #1/A PRO 57, EBV_Uma15.pdb #1/A VAL 58, EBV_Uma15.pdb #1/A
LEU 59, EBV_Uma15.pdb #1/A VAL 60, EBV_Uma15.pdb #1/A VAL 61, EBV_Uma15.pdb
#1/A ASP 62, EBV_Uma15.pdb #1/A PHE 63, EBV_Uma15.pdb #1/A ALA 64,
EBV_Uma15.pdb #1/A SER 65, EBV_Uma15.pdb #1/A LEU 66, EBV_Uma15.pdb #1/A TYR
67, EBV_Uma15.pdb #1/A PRO 68, EBV_Uma15.pdb #1/A SER 69, EBV_Uma15.pdb #1/A
ILE 70, EBV_Uma15.pdb #1/A ILE 71, EBV_Uma15.pdb #1/A GLN 72, EBV_Uma15.pdb
#1/A ALA 73, EBV_Uma15.pdb #1/A HIS 74, EBV_Uma15.pdb #1/A ASN 75,
EBV_Uma15.pdb #1/A LEU 76, EBV_Uma15.pdb #1/A CYS 77, EBV_Uma15.pdb #1/A TYR
78, EBV_Uma15.pdb #1/A SER 79, EBV_Uma15.pdb #1/A THR 80, EBV_Uma15.pdb #1/A
MET 81, EBV_Uma15.pdb #1/A ILE 82, EBV_Uma15.pdb #1/A THR 83, EBV_Uma15.pdb
#1/A PRO 84, EBV_Uma15.pdb #1/A GLY 85, EBV_Uma15.pdb #1/A GLU 86,
EBV_Uma15.pdb #1/A GLU 87, EBV_Uma15.pdb #1/A HIS 88, EBV_Uma15.pdb #1/A ARG
89, EBV_Uma15.pdb #1/A LEU 90, EBV_Uma15.pdb #1/A ALA 91, EBV_Uma15.pdb #1/A
GLY 92, EBV_Uma15.pdb #1/A LEU 93, EBV_Uma15.pdb #1/A ARG 94, EBV_Uma15.pdb
#1/A PRO 95, EBV_Uma15.pdb #1/A GLY 96, EBV_Uma15.pdb #1/A GLU 97,
EBV_Uma15.pdb #1/A ASP 98, EBV_Uma15.pdb #1/A TYR 99, EBV_Uma15.pdb #1/A GLU
100, EBV_Uma15.pdb #1/A SER 101, EBV_Uma15.pdb #1/A PHE 102, EBV_Uma15.pdb
#1/A ARG 103, EBV_Uma15.pdb #1/A LEU 104, EBV_Uma15.pdb #1/A THR 105,
EBV_Uma15.pdb #1/A GLY 106, EBV_Uma15.pdb #1/A GLY 107, EBV_Uma15.pdb #1/A VAL
108, EBV_Uma15.pdb #1/A TYR 109, EBV_Uma15.pdb #1/A HIS 110, EBV_Uma15.pdb
#1/A PHE 111, EBV_Uma15.pdb #1/A VAL 112, EBV_Uma15.pdb #1/A LYS 113,
EBV_Uma15.pdb #1/A LYS 114, EBV_Uma15.pdb #1/A HIS 115, EBV_Uma15.pdb #1/A VAL
116, EBV_Uma15.pdb #1/A HIS 117, EBV_Uma15.pdb #1/A GLU 118, EBV_Uma15.pdb
#1/A SER 119, EBV_Uma15.pdb #1/A PHE 120, EBV_Uma15.pdb #1/A LEU 121,
EBV_Uma15.pdb #1/A ALA 122, EBV_Uma15.pdb #1/A SER 123, EBV_Uma15.pdb #1/A LEU
124, EBV_Uma15.pdb #1/A LEU 125, EBV_Uma15.pdb #1/A THR 126, EBV_Uma15.pdb
#1/A SER 127, EBV_Uma15.pdb #1/A TRP 128, EBV_Uma15.pdb #1/A LEU 129,
EBV_Uma15.pdb #1/A ALA 130, EBV_Uma15.pdb #1/A LYS 131, EBV_Uma15.pdb #1/A ARG
132, EBV_Uma15.pdb #1/A LYS 133, EBV_Uma15.pdb #1/A ALA 134, EBV_Uma15.pdb
#1/A ILE 135, EBV_Uma15.pdb #1/A LYS 136, EBV_Uma15.pdb #1/A LYS 137,
EBV_Uma15.pdb #1/A LEU 138, EBV_Uma15.pdb #1/A LEU 139, EBV_Uma15.pdb #1/A ALA
140, EBV_Uma15.pdb #1/A ALA 141, EBV_Uma15.pdb #1/A CYS 142, EBV_Uma15.pdb
#1/A GLU 143, EBV_Uma15.pdb #1/A ASP 144, EBV_Uma15.pdb #1/A PRO 145,
EBV_Uma15.pdb #1/A ARG 146, EBV_Uma15.pdb #1/A GLN 147, EBV_Uma15.pdb #1/A ARG
148, EBV_Uma15.pdb #1/A THR 149, EBV_Uma15.pdb #1/A ILE 150, EBV_Uma15.pdb
#1/A LEU 151, EBV_Uma15.pdb #1/A ASP 152, EBV_Uma15.pdb #1/A LYS 153,
EBV_Uma15.pdb #1/A GLN 154, EBV_Uma15.pdb #1/A GLN 155, EBV_Uma15.pdb #1/A LEU
156, EBV_Uma15.pdb #1/A ALA 157, EBV_Uma15.pdb #1/A ILE 158, EBV_Uma15.pdb
#1/A LYS 159, EBV_Uma15.pdb #1/A CYS 160, EBV_Uma15.pdb #1/A THR 161,
EBV_Uma15.pdb #1/A CYS 162, EBV_Uma15.pdb #1/A ASN 163, EBV_Uma15.pdb #1/A ALA
164, EBV_Uma15.pdb #1/A VAL 165, EBV_Uma15.pdb #1/A TYR 166, EBV_Uma15.pdb
#1/A GLY 167, EBV_Uma15.pdb #1/A PHE 168, EBV_Uma15.pdb #1/A THR 169,
EBV_Uma15.pdb #1/A GLY 170, EBV_Uma15.pdb #1/A VAL 171, EBV_Uma15.pdb #1/A ALA
172, EBV_Uma15.pdb #1/A ASN 173, EBV_Uma15.pdb #1/A GLY 174, EBV_Uma15.pdb
#1/A LEU 175, EBV_Uma15.pdb #1/A PHE 176, EBV_Uma15.pdb #1/A PRO 177,
EBV_Uma15.pdb #1/A CYS 178, EBV_Uma15.pdb #1/A LEU 179, EBV_Uma15.pdb #1/A SER
180, EBV_Uma15.pdb #1/A ILE 181, EBV_Uma15.pdb #1/A ALA 182, EBV_Uma15.pdb
#1/A GLU 183, EBV_Uma15.pdb #1/A THR 184, EBV_Uma15.pdb #1/A VAL 185,
EBV_Uma15.pdb #1/A THR 186, EBV_Uma15.pdb #1/A LEU 187, EBV_Uma15.pdb #1/A GLN
188, EBV_Uma15.pdb #1/A GLY 189, EBV_Uma15.pdb #1/A ARG 190, EBV_Uma15.pdb
#1/A THR 191, EBV_Uma15.pdb #1/A MET 192, EBV_Uma15.pdb #1/A LEU 193,
EBV_Uma15.pdb #1/A GLU 194, EBV_Uma15.pdb #1/A ARG 195, EBV_Uma15.pdb #1/A ALA
196, EBV_Uma15.pdb #1/A LYS 197, EBV_Uma15.pdb #1/A ALA 198, EBV_Uma15.pdb
#1/A PHE 199, EBV_Uma15.pdb #1/A VAL 200, EBV_Uma15.pdb #1/A GLU 201,
EBV_Uma15.pdb #1/A ALA 202, EBV_Uma15.pdb #1/A LEU 203, EBV_Uma15.pdb #1/A SER
204, EBV_Uma15.pdb #1/A PRO 205, EBV_Uma15.pdb #1/A ALA 206, EBV_Uma15.pdb
#1/A ASN 207, EBV_Uma15.pdb #1/A LEU 208, EBV_Uma15.pdb #1/A GLN 209,
EBV_Uma15.pdb #1/A ALA 210, EBV_Uma15.pdb #1/A LEU 211, EBV_Uma15.pdb #1/A ALA
212, EBV_Uma15.pdb #1/A PRO 213, EBV_Uma15.pdb #1/A SER 214, EBV_Uma15.pdb
#1/A PRO 215, EBV_Uma15.pdb #1/A ASP 216, EBV_Uma15.pdb #1/A ALA 217,
EBV_Uma15.pdb #1/A TRP 218, EBV_Uma15.pdb #1/A ALA 219, EBV_Uma15.pdb #1/A PRO
220, EBV_Uma15.pdb #1/A LEU 221, EBV_Uma15.pdb #1/A ASN 222, EBV_Uma15.pdb
#1/A PRO 223, EBV_Uma15.pdb #1/A GLU 224, EBV_Uma15.pdb #1/A GLY 225,
EBV_Uma15.pdb #1/A GLN 226, EBV_Uma15.pdb #1/A LEU 227, EBV_Uma15.pdb #1/A ARG
228, EBV_Uma15.pdb #1/A VAL 229, EBV_Uma15.pdb #1/A ILE 230, EBV_Uma15.pdb
#1/A TYR 231, EBV_Uma15.pdb #1/A GLY 232, EBV_Uma15.pdb #1/A ASP 233,
EBV_Uma15.pdb #1/A THR 234, EBV_Uma15.pdb #1/A ASP 235, EBV_Uma15.pdb #1/A SER
236, EBV_Uma15.pdb #1/A LEU 237, EBV_Uma15.pdb #1/A PHE 238, EBV_Uma15.pdb
#1/A ILE 239, EBV_Uma15.pdb #1/A GLU 240, EBV_Uma15.pdb #1/A CYS 241,
EBV_Uma15.pdb #1/A ARG 242, EBV_Uma15.pdb #1/A GLY 243, EBV_Uma15.pdb #1/A PHE
244, EBV_Uma15.pdb #1/A SER 245, EBV_Uma15.pdb #1/A GLU 246, EBV_Uma15.pdb
#1/A SER 247, EBV_Uma15.pdb #1/A GLU 248, EBV_Uma15.pdb #1/A THR 249,
EBV_Uma15.pdb #1/A LEU 250, EBV_Uma15.pdb #1/A ARG 251, EBV_Uma15.pdb #1/A PHE
252, EBV_Uma15.pdb #1/A ALA 253, EBV_Uma15.pdb #1/A ASP 254, EBV_Uma15.pdb
#1/A ALA 255, EBV_Uma15.pdb #1/A LEU 256, EBV_Uma15.pdb #1/A ALA 257,
EBV_Uma15.pdb #1/A ALA 258, EBV_Uma15.pdb #1/A HIS 259, EBV_Uma15.pdb #1/A THR
260, EBV_Uma15.pdb #1/A THR 261, EBV_Uma15.pdb #1/A ARG 262, EBV_Uma15.pdb
#1/A SER 263, EBV_Uma15.pdb #1/A LEU 264, EBV_Uma15.pdb #1/A PHE 265,
EBV_Uma15.pdb #1/A VAL 266, EBV_Uma15.pdb #1/A ALA 267, EBV_Uma15.pdb #1/A PRO
268, EBV_Uma15.pdb #1/A ILE 269, EBV_Uma15.pdb #1/A SER 270, EBV_Uma15.pdb
#1/A LEU 271, EBV_Uma15.pdb #1/A GLU 272, EBV_Uma15.pdb #1/A ALA 273,
EBV_Uma15.pdb #1/A GLU 274, EBV_Uma15.pdb #1/A LYS 275, EBV_Uma15.pdb #1/A THR
276, EBV_Uma15.pdb #1/A PHE 277, EBV_Uma15.pdb #1/A SER 278, EBV_Uma15.pdb
#1/A CYS 279, EBV_Uma15.pdb #1/A LEU 280, EBV_Uma15.pdb #1/A MET 281,
EBV_Uma15.pdb #1/A LEU 282, EBV_Uma15.pdb #1/A ILE 283, EBV_Uma15.pdb #1/A THR
284, EBV_Uma15.pdb #1/A LYS 285, EBV_Uma15.pdb #1/A LYS 286, EBV_Uma15.pdb
#1/A ARG 287, EBV_Uma15.pdb #1/A TYR 288, EBV_Uma15.pdb #1/A VAL 289,
EBV_Uma15.pdb #1/A GLY 290, EBV_Uma15.pdb #1/A VAL 291, EBV_Uma15.pdb #1/A LEU
292, EBV_Uma15.pdb #1/A THR 293, EBV_Uma15.pdb #1/A ASP 294, EBV_Uma15.pdb
#1/A GLY 295, EBV_Uma15.pdb #1/A LYS 296, EBV_Uma15.pdb #1/A THR 297,
EBV_Uma15.pdb #1/A LEU 298, EBV_Uma15.pdb #1/A MET 299, EBV_Uma15.pdb #1/A LYS
300, EBV_Uma15.pdb #1/A GLY 301, EBV_Uma15.pdb #1/A VAL 302, EBV_Uma15.pdb
#1/A GLU 303, EBV_Uma15.pdb #1/A LEU 304, EBV_Uma15.pdb #1/A VAL 305,
EBV_Uma15.pdb #1/A ARG 306, EBV_Uma15.pdb #1/A LYS 307, EBV_Uma15.pdb #1/A THR
308, EBV_Uma15.pdb #1/A ALA 309, EBV_Uma15.pdb #1/A CYS 310, EBV_Uma15.pdb
#1/A LYS 311, EBV_Uma15.pdb #1/A PHE 312, EBV_Uma15.pdb #1/A VAL 313,
EBV_Uma15.pdb #1/A GLN 314, EBV_Uma15.pdb #1/A THR 315, EBV_Uma15.pdb #1/A ARG
316, EBV_Uma15.pdb #1/A CYS 317, EBV_Uma15.pdb #1/A ARG 318, EBV_Uma15.pdb
#1/A ARG 319, EBV_Uma15.pdb #1/A VAL 320, EBV_Uma15.pdb #1/A LEU 321,
EBV_Uma15.pdb #1/A ASP 322, EBV_Uma15.pdb #1/A LEU 323, EBV_Uma15.pdb #1/A VAL
324, EBV_Uma15.pdb #1/A LEU 325, EBV_Uma15.pdb #1/A ALA 326, EBV_Uma15.pdb
#1/A ASP 327, EBV_Uma15.pdb #1/A ALA 328, EBV_Uma15.pdb #1/A ARG 329,
EBV_Uma15.pdb #1/A VAL 330, EBV_Uma15.pdb #1/A LYS 331, EBV_Uma15.pdb #1/A GLU
332, EBV_Uma15.pdb #1/A ALA 333, EBV_Uma15.pdb #1/A ALA 334, EBV_Uma15.pdb
#1/A SER 335, EBV_Uma15.pdb #1/A LEU 336, EBV_Uma15.pdb #1/A LEU 337,
EBV_Uma15.pdb #1/A SER 338, EBV_Uma15.pdb #1/A HIS 339, EBV_Uma15.pdb #1/A ARG
340, EBV_Uma15.pdb #1/A PRO 341, EBV_Uma15.pdb #1/A PHE 342, EBV_Uma15.pdb
#1/A GLN 343, EBV_Uma15.pdb #1/A GLU 344, EBV_Uma15.pdb #1/A SER 345,
EBV_Uma15.pdb #1/A PHE 346, EBV_Uma15.pdb #1/A THR 347, EBV_Uma15.pdb #1/A GLN
348, EBV_Uma15.pdb #1/A GLY 349, EBV_Uma15.pdb #1/A LEU 350, EBV_Uma15.pdb
#1/A PRO 351, EBV_Uma15.pdb #1/A VAL 352, EBV_Uma15.pdb #1/A GLY 353,
EBV_Uma15.pdb #1/A PHE 354, EBV_Uma15.pdb #1/A LEU 355, EBV_Uma15.pdb #1/A PRO
356, EBV_Uma15.pdb #1/A VAL 357, EBV_Uma15.pdb #1/A ILE 358, EBV_Uma15.pdb
#1/A ASP 359, EBV_Uma15.pdb #1/A ILE 360, EBV_Uma15.pdb #1/A LEU 361,
EBV_Uma15.pdb #1/A ASN 362, EBV_Uma15.pdb #1/A GLN 363, EBV_Uma15.pdb #1/A ALA
364, EBV_Uma15.pdb #1/A TYR 365, EBV_Uma15.pdb #1/A THR 366, EBV_Uma15.pdb
#1/A ASP 367, EBV_Uma15.pdb #1/A LEU 368, EBV_Uma15.pdb #1/A ARG 369,
EBV_Uma15.pdb #1/A GLU 370, EBV_Uma15.pdb #1/A GLY 371, EBV_Uma15.pdb #1/A ARG
372, EBV_Uma15.pdb #1/A VAL 373, EBV_Uma15.pdb #1/A PRO 374, EBV_Uma15.pdb
#1/A MET 375, EBV_Uma15.pdb #1/A GLY 376, EBV_Uma15.pdb #1/A GLU 377,
EBV_Uma15.pdb #1/A LEU 378, EBV_Uma15.pdb #1/A CYS 379, EBV_Uma15.pdb #1/A PHE
380, EBV_Uma15.pdb #1/A SER 381, EBV_Uma15.pdb #1/A THR 382, EBV_Uma15.pdb
#1/A GLU 383, EBV_Uma15.pdb #1/A LEU 384, EBV_Uma15.pdb #1/A SER 385,
EBV_Uma15.pdb #1/A ARG 386, EBV_Uma15.pdb #1/A LYS 387, EBV_Uma15.pdb #1/A LEU
388, EBV_Uma15.pdb #1/A SER 389, EBV_Uma15.pdb #1/A ALA 390, EBV_Uma15.pdb
#1/A TYR 391, EBV_Uma15.pdb #1/A LYS 392, EBV_Uma15.pdb #1/A SER 393,
EBV_Uma15.pdb #1/A THR 394, EBV_Uma15.pdb #1/A GLN 395, EBV_Uma15.pdb #1/A MET
396, EBV_Uma15.pdb #1/A PRO 397, EBV_Uma15.pdb #1/A HIS 398, EBV_Uma15.pdb
#1/A LEU 399, EBV_Uma15.pdb #1/A ALA 400, EBV_Uma15.pdb #1/A VAL 401,
EBV_Uma15.pdb #1/A TYR 402, EBV_Uma15.pdb #1/A GLN 403, EBV_Uma15.pdb #1/A LYS
404, EBV_Uma15.pdb #1/A PHE 405, EBV_Uma15.pdb #1/A VAL 406, EBV_Uma15.pdb
#1/A GLU 407, EBV_Uma15.pdb #1/A ARG 408, EBV_Uma15.pdb #1/A ASN 409,
EBV_Uma15.pdb #1/A GLU 410, EBV_Uma15.pdb #1/A GLU 411, EBV_Uma15.pdb #1/A LEU
412, EBV_Uma15.pdb #1/A PRO 413, EBV_Uma15.pdb #1/A GLN 414, EBV_Uma15.pdb
#1/A ILE 415, EBV_Uma15.pdb #1/A HIS 416, EBV_Uma15.pdb #1/A ASP 417,
EBV_Uma15.pdb #1/A ARG 418, EBV_Uma15.pdb #1/A ILE 419, EBV_Uma15.pdb #1/A GLN
420, EBV_Uma15.pdb #1/A TYR 421, EBV_Uma15.pdb #1/A VAL 422, EBV_Uma15.pdb
#1/A PHE 423, EBV_Uma15.pdb #1/A VAL 424, EBV_Uma15.pdb #1/A GLU 425,
EBV_Uma15.pdb #1/A PRO 426, EBV_Uma15.pdb #1/A LYS 427, EBV_Uma15.pdb #1/A GLY
428, EBV_Uma15.pdb #1/A GLY 429, EBV_Uma15.pdb #1/A VAL 430, EBV_Uma15.pdb
#1/A LYS 431, EBV_Uma15.pdb #1/A GLY 432, EBV_Uma15.pdb #1/A ALA 433,
EBV_Uma15.pdb #1/A ARG 434, EBV_Uma15.pdb #1/A LYS 435, EBV_Uma15.pdb #1/A THR
436, EBV_Uma15.pdb #1/A GLU 437, EBV_Uma15.pdb #1/A MET 438, EBV_Uma15.pdb
#1/A ALA 439, EBV_Uma15.pdb #1/A GLU 440, EBV_Uma15.pdb #1/A ASP 441,
EBV_Uma15.pdb #1/A PRO 442, EBV_Uma15.pdb #1/A ALA 443, EBV_Uma15.pdb #1/A TYR
444, EBV_Uma15.pdb #1/A ALA 445, EBV_Uma15.pdb #1/A GLU 446, EBV_Uma15.pdb
#1/A ARG 447, EBV_Uma15.pdb #1/A HIS 448, EBV_Uma15.pdb #1/A GLY 449,
EBV_Uma15.pdb #1/A VAL 450, EBV_Uma15.pdb #1/A PRO 451, EBV_Uma15.pdb #1/A VAL
452, EBV_Uma15.pdb #1/A ALA 453, EBV_Uma15.pdb #1/A VAL 454, EBV_Uma15.pdb
#1/A ASP 455, EBV_Uma15.pdb #1/A HIS 456, EBV_Uma15.pdb #1/A TYR 457,
EBV_Uma15.pdb #1/A PHE 458, EBV_Uma15.pdb #1/A ASP 459, EBV_Uma15.pdb #1/A LYS
460, EBV_Uma15.pdb #1/A LEU 461, EBV_Uma15.pdb #1/A LEU 462, EBV_Uma15.pdb
#1/A GLN 463, EBV_Uma15.pdb #1/A GLY 464, EBV_Uma15.pdb #1/A ALA 465,
EBV_Uma15.pdb #1/A ALA 466, EBV_Uma15.pdb #1/A ASN 467, EBV_Uma15.pdb #1/A ILE
468, EBV_Uma15.pdb #1/A LEU 469, EBV_Uma15.pdb #1/A GLN 470, EBV_Uma15.pdb
#1/A CYS 471, EBV_Uma15.pdb #1/A LEU 472
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, 8oj6.cif #2/A THR 59, 8oj6.cif #2/A GLY
60, 8oj6.cif #2/A PRO 61, 8oj6.cif #2/A THR 62, 8oj6.cif #2/A GLN 63, 8oj6.cif
#2/A ARG 64, 8oj6.cif #2/A HIS 65, 8oj6.cif #2/A THR 66, 8oj6.cif #2/A TYR 67,
8oj6.cif #2/A TYR 68, 8oj6.cif #2/A SER 69, 8oj6.cif #2/A GLU 70, 8oj6.cif
#2/A CYS 71, 8oj6.cif #2/A ASP 72, 8oj6.cif #2/A GLU 73, 8oj6.cif #2/A PHE 74,
8oj6.cif #2/A ARG 75, 8oj6.cif #2/A PHE 76, 8oj6.cif #2/A ILE 77, 8oj6.cif
#2/A ALA 78, 8oj6.cif #2/A PRO 79, 8oj6.cif #2/A ARG 80, 8oj6.cif #2/A VAL 81,
8oj6.cif #2/A LEU 82, 8oj6.cif #2/A ASP 83, 8oj6.cif #2/A GLU 84, 8oj6.cif
#2/A ASP 85, 8oj6.cif #2/A ALA 86, 8oj6.cif #2/A PRO 87, 8oj6.cif #2/A PRO 88,
8oj6.cif #2/A GLU 89, 8oj6.cif #2/A LYS 90, 8oj6.cif #2/A ARG 91, 8oj6.cif
#2/A ALA 92, 8oj6.cif #2/A GLY 93, 8oj6.cif #2/A VAL 94, 8oj6.cif #2/A HIS 95,
8oj6.cif #2/A ASP 96, 8oj6.cif #2/A GLY 97, 8oj6.cif #2/A HIS 98, 8oj6.cif
#2/A LEU 99, 8oj6.cif #2/A LYS 100, 8oj6.cif #2/A ARG 101, 8oj6.cif #2/A ALA
102, 8oj6.cif #2/A PRO 103, 8oj6.cif #2/A LYS 104, 8oj6.cif #2/A VAL 105,
8oj6.cif #2/A TYR 106, 8oj6.cif #2/A CYS 107, 8oj6.cif #2/A GLY 108, 8oj6.cif
#2/A GLY 109, 8oj6.cif #2/A ASP 110, 8oj6.cif #2/A GLU 111, 8oj6.cif #2/A ARG
112, 8oj6.cif #2/A ASP 113, 8oj6.cif #2/A VAL 114, 8oj6.cif #2/A LEU 115,
8oj6.cif #2/A ARG 116, 8oj6.cif #2/A VAL 117, 8oj6.cif #2/A GLY 118, 8oj6.cif
#2/A SER 119, 8oj6.cif #2/A GLY 120, 8oj6.cif #2/A GLY 121, 8oj6.cif #2/A PHE
122, 8oj6.cif #2/A TRP 123, 8oj6.cif #2/A PRO 124, 8oj6.cif #2/A ARG 125,
8oj6.cif #2/A ARG 126, 8oj6.cif #2/A SER 127, 8oj6.cif #2/A ARG 128, 8oj6.cif
#2/A LEU 129, 8oj6.cif #2/A TRP 130, 8oj6.cif #2/A GLY 131, 8oj6.cif #2/A GLY
132, 8oj6.cif #2/A VAL 133, 8oj6.cif #2/A ASP 134, 8oj6.cif #2/A HIS 135,
8oj6.cif #2/A ALA 136, 8oj6.cif #2/A PRO 137, 8oj6.cif #2/A ALA 138, 8oj6.cif
#2/A GLY 139, 8oj6.cif #2/A PHE 140, 8oj6.cif #2/A ASN 141, 8oj6.cif #2/A PRO
142, 8oj6.cif #2/A THR 143, 8oj6.cif #2/A VAL 144, 8oj6.cif #2/A THR 145,
8oj6.cif #2/A VAL 146, 8oj6.cif #2/A PHE 147, 8oj6.cif #2/A HIS 148, 8oj6.cif
#2/A VAL 149, 8oj6.cif #2/A TYR 150, 8oj6.cif #2/A ASP 151, 8oj6.cif #2/A ILE
152, 8oj6.cif #2/A LEU 153, 8oj6.cif #2/A GLU 154, 8oj6.cif #2/A ASN 155,
8oj6.cif #2/A VAL 156, 8oj6.cif #2/A GLU 157, 8oj6.cif #2/A HIS 158, 8oj6.cif
#2/A ALA 159, 8oj6.cif #2/A TYR 160, 8oj6.cif #2/A GLY 161, 8oj6.cif #2/A MET
162, 8oj6.cif #2/A ARG 163, 8oj6.cif #2/A ALA 164, 8oj6.cif #2/A ALA 165,
8oj6.cif #2/A GLN 166, 8oj6.cif #2/A PHE 167, 8oj6.cif #2/A HIS 168, 8oj6.cif
#2/A ALA 169, 8oj6.cif #2/A ARG 170, 8oj6.cif #2/A PHE 171, 8oj6.cif #2/A MET
172, 8oj6.cif #2/A ASP 173, 8oj6.cif #2/A ALA 174, 8oj6.cif #2/A ILE 175,
8oj6.cif #2/A THR 176, 8oj6.cif #2/A PRO 177, 8oj6.cif #2/A THR 178, 8oj6.cif
#2/A GLY 179, 8oj6.cif #2/A THR 180, 8oj6.cif #2/A VAL 181, 8oj6.cif #2/A ILE
182, 8oj6.cif #2/A THR 183, 8oj6.cif #2/A LEU 184, 8oj6.cif #2/A LEU 185,
8oj6.cif #2/A GLY 186, 8oj6.cif #2/A LEU 187, 8oj6.cif #2/A THR 188, 8oj6.cif
#2/A PRO 189, 8oj6.cif #2/A GLU 190, 8oj6.cif #2/A GLY 191, 8oj6.cif #2/A HIS
192, 8oj6.cif #2/A ARG 193, 8oj6.cif #2/A VAL 194, 8oj6.cif #2/A ALA 195,
8oj6.cif #2/A VAL 196, 8oj6.cif #2/A HIS 197, 8oj6.cif #2/A VAL 198, 8oj6.cif
#2/A TYR 199, 8oj6.cif #2/A GLY 200, 8oj6.cif #2/A THR 201, 8oj6.cif #2/A ARG
202, 8oj6.cif #2/A GLN 203, 8oj6.cif #2/A TYR 204, 8oj6.cif #2/A PHE 205,
8oj6.cif #2/A TYR 206, 8oj6.cif #2/A MET 207, 8oj6.cif #2/A ASN 208, 8oj6.cif
#2/A LYS 209, 8oj6.cif #2/A GLU 210, 8oj6.cif #2/A GLU 211, 8oj6.cif #2/A VAL
212, 8oj6.cif #2/A ASP 213, 8oj6.cif #2/A ARG 214, 8oj6.cif #2/A HIS 215,
8oj6.cif #2/A LEU 216, 8oj6.cif #2/A GLN 217, 8oj6.cif #2/A CYS 218, 8oj6.cif
#2/A ARG 219, 8oj6.cif #2/A ALA 220, 8oj6.cif #2/A PRO 221, 8oj6.cif #2/A ARG
222, 8oj6.cif #2/A ASP 223, 8oj6.cif #2/A LEU 224, 8oj6.cif #2/A CYS 225,
8oj6.cif #2/A GLU 226, 8oj6.cif #2/A ARG 227, 8oj6.cif #2/A MET 228, 8oj6.cif
#2/A ALA 229, 8oj6.cif #2/A ALA 230, 8oj6.cif #2/A ALA 231, 8oj6.cif #2/A LEU
232, 8oj6.cif #2/A ARG 233, 8oj6.cif #2/A GLU 234, 8oj6.cif #2/A SER 235,
8oj6.cif #2/A PRO 236, 8oj6.cif #2/A GLY 237, 8oj6.cif #2/A ALA 238, 8oj6.cif
#2/A SER 239, 8oj6.cif #2/A PHE 240, 8oj6.cif #2/A ARG 241, 8oj6.cif #2/A GLY
242, 8oj6.cif #2/A ILE 243, 8oj6.cif #2/A SER 244, 8oj6.cif #2/A ALA 245,
8oj6.cif #2/A ASP 246, 8oj6.cif #2/A HIS 247, 8oj6.cif #2/A PHE 248, 8oj6.cif
#2/A GLU 249, 8oj6.cif #2/A ALA 250, 8oj6.cif #2/A GLU 251, 8oj6.cif #2/A VAL
252, 8oj6.cif #2/A VAL 253, 8oj6.cif #2/A GLU 254, 8oj6.cif #2/A ARG 255,
8oj6.cif #2/A THR 256, 8oj6.cif #2/A ASP 257, 8oj6.cif #2/A VAL 258, 8oj6.cif
#2/A TYR 259, 8oj6.cif #2/A TYR 260, 8oj6.cif #2/A TYR 261, 8oj6.cif #2/A GLU
262, 8oj6.cif #2/A THR 263, 8oj6.cif #2/A ARG 264, 8oj6.cif #2/A PRO 265,
8oj6.cif #2/A ALA 266, 8oj6.cif #2/A LEU 267, 8oj6.cif #2/A PHE 268, 8oj6.cif
#2/A TYR 269, 8oj6.cif #2/A ARG 270, 8oj6.cif #2/A VAL 271, 8oj6.cif #2/A TYR
272, 8oj6.cif #2/A VAL 273, 8oj6.cif #2/A ARG 274, 8oj6.cif #2/A SER 275,
8oj6.cif #2/A GLY 276, 8oj6.cif #2/A ARG 277, 8oj6.cif #2/A VAL 278, 8oj6.cif
#2/A LEU 279, 8oj6.cif #2/A SER 280, 8oj6.cif #2/A TYR 281, 8oj6.cif #2/A LEU
282, 8oj6.cif #2/A CYS 283, 8oj6.cif #2/A ASP 284, 8oj6.cif #2/A ASN 285,
8oj6.cif #2/A PHE 286, 8oj6.cif #2/A CYS 287, 8oj6.cif #2/A PRO 288, 8oj6.cif
#2/A ALA 289, 8oj6.cif #2/A ILE 290, 8oj6.cif #2/A LYS 291, 8oj6.cif #2/A LYS
292, 8oj6.cif #2/A TYR 293, 8oj6.cif #2/A GLU 294, 8oj6.cif #2/A GLY 295,
8oj6.cif #2/A GLY 296, 8oj6.cif #2/A VAL 297, 8oj6.cif #2/A ASP 298, 8oj6.cif
#2/A ALA 299, 8oj6.cif #2/A THR 300, 8oj6.cif #2/A THR 301, 8oj6.cif #2/A ARG
302, 8oj6.cif #2/A PHE 303, 8oj6.cif #2/A ILE 304, 8oj6.cif #2/A LEU 305,
8oj6.cif #2/A ASP 306, 8oj6.cif #2/A ASN 307, 8oj6.cif #2/A PRO 308, 8oj6.cif
#2/A GLY 309, 8oj6.cif #2/A PHE 310, 8oj6.cif #2/A VAL 311, 8oj6.cif #2/A THR
312, 8oj6.cif #2/A PHE 313, 8oj6.cif #2/A GLY 314, 8oj6.cif #2/A TRP 315,
8oj6.cif #2/A TYR 316, 8oj6.cif #2/A ARG 317, 8oj6.cif #2/A LEU 318, 8oj6.cif
#2/A LYS 319, 8oj6.cif #2/A PRO 320, 8oj6.cif #2/A GLY 321, 8oj6.cif #2/A ARG
322, 8oj6.cif #2/A ASN 323, 8oj6.cif #2/A ASN 324, 8oj6.cif #2/A THR 325,
8oj6.cif #2/A LEU 326, 8oj6.cif #2/A ALA 327, 8oj6.cif #2/A GLN 328, 8oj6.cif
#2/A PRO 329, 8oj6.cif #2/A ARG 330, 8oj6.cif #2/A ALA 331, 8oj6.cif #2/A PRO
332, 8oj6.cif #2/A MET 333, 8oj6.cif #2/A ALA 334, 8oj6.cif #2/A PHE 335,
8oj6.cif #2/A GLY 336, 8oj6.cif #2/A THR 337, 8oj6.cif #2/A SER 338, 8oj6.cif
#2/A SER 339, 8oj6.cif #2/A ASP 340, 8oj6.cif #2/A VAL 341, 8oj6.cif #2/A GLU
342, 8oj6.cif #2/A PHE 343, 8oj6.cif #2/A ASN 344, 8oj6.cif #2/A CYS 345,
8oj6.cif #2/A THR 346, 8oj6.cif #2/A ALA 347, 8oj6.cif #2/A ASP 348, 8oj6.cif
#2/A ASN 349, 8oj6.cif #2/A LEU 350, 8oj6.cif #2/A ALA 351, 8oj6.cif #2/A ILE
352, 8oj6.cif #2/A GLU 353, 8oj6.cif #2/A GLY 354, 8oj6.cif #2/A GLY 355,
8oj6.cif #2/A MET 356, 8oj6.cif #2/A SER 357, 8oj6.cif #2/A ASP 358, 8oj6.cif
#2/A LEU 359, 8oj6.cif #2/A PRO 360, 8oj6.cif #2/A ALA 361, 8oj6.cif #2/A TYR
362, 8oj6.cif #2/A LYS 363, 8oj6.cif #2/A LEU 364, 8oj6.cif #2/A MET 365,
8oj6.cif #2/A CYS 366, 8oj6.cif #2/A PHE 367, 8oj6.cif #2/A ASP 368, 8oj6.cif
#2/A ILE 369, 8oj6.cif #2/A GLU 370, 8oj6.cif #2/A CYS 371, 8oj6.cif #2/A LYS
372, 8oj6.cif #2/A ALA 373, 8oj6.cif #2/A GLY 374, 8oj6.cif #2/A GLY 375,
8oj6.cif #2/A GLU 376, 8oj6.cif #2/A ASP 377, 8oj6.cif #2/A GLU 378, 8oj6.cif
#2/A LEU 379, 8oj6.cif #2/A ALA 380, 8oj6.cif #2/A PHE 381, 8oj6.cif #2/A PRO
382, 8oj6.cif #2/A VAL 383, 8oj6.cif #2/A ALA 384, 8oj6.cif #2/A GLY 385,
8oj6.cif #2/A HIS 386, 8oj6.cif #2/A PRO 387, 8oj6.cif #2/A GLU 388, 8oj6.cif
#2/A ASP 389, 8oj6.cif #2/A LEU 390, 8oj6.cif #2/A VAL 391, 8oj6.cif #2/A ILE
392, 8oj6.cif #2/A GLN 393, 8oj6.cif #2/A ILE 394, 8oj6.cif #2/A SER 395,
8oj6.cif #2/A CYS 396, 8oj6.cif #2/A LEU 397, 8oj6.cif #2/A LEU 398, 8oj6.cif
#2/A TYR 399, 8oj6.cif #2/A ASP 400, 8oj6.cif #2/A LEU 401, 8oj6.cif #2/A SER
402, 8oj6.cif #2/A THR 403, 8oj6.cif #2/A THR 404, 8oj6.cif #2/A ALA 405,
8oj6.cif #2/A LEU 406, 8oj6.cif #2/A GLU 407, 8oj6.cif #2/A HIS 408, 8oj6.cif
#2/A VAL 409, 8oj6.cif #2/A LEU 410, 8oj6.cif #2/A LEU 411, 8oj6.cif #2/A PHE
412, 8oj6.cif #2/A SER 413, 8oj6.cif #2/A LEU 414, 8oj6.cif #2/A GLY 415,
8oj6.cif #2/A SER 416, 8oj6.cif #2/A CYS 417, 8oj6.cif #2/A ASP 418, 8oj6.cif
#2/A LEU 419, 8oj6.cif #2/A PRO 420, 8oj6.cif #2/A GLU 421, 8oj6.cif #2/A SER
422, 8oj6.cif #2/A HIS 423, 8oj6.cif #2/A LEU 424, 8oj6.cif #2/A ASN 425,
8oj6.cif #2/A GLU 426, 8oj6.cif #2/A LEU 427, 8oj6.cif #2/A ALA 428, 8oj6.cif
#2/A ALA 429, 8oj6.cif #2/A ARG 430, 8oj6.cif #2/A GLY 431, 8oj6.cif #2/A LEU
432, 8oj6.cif #2/A PRO 433, 8oj6.cif #2/A THR 434, 8oj6.cif #2/A PRO 435,
8oj6.cif #2/A VAL 436, 8oj6.cif #2/A VAL 437, 8oj6.cif #2/A LEU 438, 8oj6.cif
#2/A GLU 439, 8oj6.cif #2/A PHE 440, 8oj6.cif #2/A ASP 441, 8oj6.cif #2/A SER
442, 8oj6.cif #2/A GLU 443, 8oj6.cif #2/A PHE 444, 8oj6.cif #2/A GLU 445,
8oj6.cif #2/A MET 446, 8oj6.cif #2/A LEU 447, 8oj6.cif #2/A LEU 448, 8oj6.cif
#2/A ALA 449, 8oj6.cif #2/A PHE 450, 8oj6.cif #2/A MET 451, 8oj6.cif #2/A THR
452, 8oj6.cif #2/A LEU 453, 8oj6.cif #2/A VAL 454, 8oj6.cif #2/A LYS 455,
8oj6.cif #2/A GLN 456, 8oj6.cif #2/A TYR 457, 8oj6.cif #2/A GLY 458, 8oj6.cif
#2/A PRO 459, 8oj6.cif #2/A GLU 460, 8oj6.cif #2/A PHE 461, 8oj6.cif #2/A VAL
462, 8oj6.cif #2/A THR 463, 8oj6.cif #2/A GLY 464, 8oj6.cif #2/A TYR 465,
8oj6.cif #2/A ASN 466, 8oj6.cif #2/A ILE 467, 8oj6.cif #2/A ILE 468, 8oj6.cif
#2/A ASN 469, 8oj6.cif #2/A PHE 470, 8oj6.cif #2/A ASP 471, 8oj6.cif #2/A TRP
472, 8oj6.cif #2/A PRO 473, 8oj6.cif #2/A PHE 474, 8oj6.cif #2/A LEU 475,
8oj6.cif #2/A LEU 476, 8oj6.cif #2/A ALA 477, 8oj6.cif #2/A LYS 478, 8oj6.cif
#2/A LEU 479, 8oj6.cif #2/A THR 480, 8oj6.cif #2/A ASP 481, 8oj6.cif #2/A ILE
482, 8oj6.cif #2/A TYR 483, 8oj6.cif #2/A LYS 484, 8oj6.cif #2/A VAL 485,
8oj6.cif #2/A PRO 486, 8oj6.cif #2/A LEU 487, 8oj6.cif #2/A ASP 488, 8oj6.cif
#2/A GLY 489, 8oj6.cif #2/A TYR 490, 8oj6.cif #2/A GLY 491, 8oj6.cif #2/A ARG
492, 8oj6.cif #2/A MET 493, 8oj6.cif #2/A ASN 494, 8oj6.cif #2/A GLY 495,
8oj6.cif #2/A ARG 496, 8oj6.cif #2/A GLY 497, 8oj6.cif #2/A VAL 498, 8oj6.cif
#2/A PHE 499, 8oj6.cif #2/A ARG 500, 8oj6.cif #2/A VAL 501, 8oj6.cif #2/A TRP
502, 8oj6.cif #2/A ASP 503, 8oj6.cif #2/A ILE 504, 8oj6.cif #2/A GLY 505,
8oj6.cif #2/A GLN 506, 8oj6.cif #2/A SER 507, 8oj6.cif #2/A HIS 508, 8oj6.cif
#2/A PHE 509, 8oj6.cif #2/A GLN 510, 8oj6.cif #2/A LYS 511, 8oj6.cif #2/A ARG
512, 8oj6.cif #2/A SER 513, 8oj6.cif #2/A LYS 514, 8oj6.cif #2/A ILE 515,
8oj6.cif #2/A LYS 516, 8oj6.cif #2/A VAL 517, 8oj6.cif #2/A ASN 518, 8oj6.cif
#2/A GLY 519, 8oj6.cif #2/A MET 520, 8oj6.cif #2/A VAL 521, 8oj6.cif #2/A ASN
522, 8oj6.cif #2/A ILE 523, 8oj6.cif #2/A ASP 524, 8oj6.cif #2/A MET 525,
8oj6.cif #2/A TYR 526, 8oj6.cif #2/A GLY 527, 8oj6.cif #2/A ILE 528, 8oj6.cif
#2/A ILE 529, 8oj6.cif #2/A THR 530, 8oj6.cif #2/A ASP 531, 8oj6.cif #2/A LYS
532, 8oj6.cif #2/A ILE 533, 8oj6.cif #2/A LYS 534, 8oj6.cif #2/A LEU 535,
8oj6.cif #2/A SER 536, 8oj6.cif #2/A SER 537, 8oj6.cif #2/A TYR 538, 8oj6.cif
#2/A LYS 539, 8oj6.cif #2/A LEU 540, 8oj6.cif #2/A ASN 541, 8oj6.cif #2/A ALA
542, 8oj6.cif #2/A VAL 543, 8oj6.cif #2/A ALA 544, 8oj6.cif #2/A GLU 545,
8oj6.cif #2/A ALA 546, 8oj6.cif #2/A VAL 547, 8oj6.cif #2/A LEU 548, 8oj6.cif
#2/A LYS 549, 8oj6.cif #2/A ASP 550, 8oj6.cif #2/A LYS 551, 8oj6.cif #2/A LYS
552, 8oj6.cif #2/A LYS 553, 8oj6.cif #2/A ASP 554, 8oj6.cif #2/A LEU 555,
8oj6.cif #2/A SER 556, 8oj6.cif #2/A TYR 557, 8oj6.cif #2/A ARG 558, 8oj6.cif
#2/A ASP 559, 8oj6.cif #2/A ILE 560, 8oj6.cif #2/A PRO 561, 8oj6.cif #2/A ALA
562, 8oj6.cif #2/A TYR 563, 8oj6.cif #2/A TYR 564, 8oj6.cif #2/A ALA 565,
8oj6.cif #2/A ALA 566, 8oj6.cif #2/A GLY 567, 8oj6.cif #2/A PRO 568, 8oj6.cif
#2/A ALA 569, 8oj6.cif #2/A GLN 570, 8oj6.cif #2/A ARG 571, 8oj6.cif #2/A GLY
572, 8oj6.cif #2/A VAL 573, 8oj6.cif #2/A ILE 574, 8oj6.cif #2/A GLY 575,
8oj6.cif #2/A GLU 576, 8oj6.cif #2/A TYR 577, 8oj6.cif #2/A CYS 578, 8oj6.cif
#2/A ILE 579, 8oj6.cif #2/A GLN 580, 8oj6.cif #2/A ASP 581, 8oj6.cif #2/A SER
582, 8oj6.cif #2/A LEU 583, 8oj6.cif #2/A LEU 584, 8oj6.cif #2/A VAL 585,
8oj6.cif #2/A GLY 586, 8oj6.cif #2/A GLN 587, 8oj6.cif #2/A LEU 588, 8oj6.cif
#2/A PHE 589, 8oj6.cif #2/A PHE 590, 8oj6.cif #2/A LYS 591, 8oj6.cif #2/A PHE
592, 8oj6.cif #2/A LEU 593, 8oj6.cif #2/A PRO 594, 8oj6.cif #2/A HIS 595,
8oj6.cif #2/A LEU 596, 8oj6.cif #2/A GLU 597, 8oj6.cif #2/A LEU 598, 8oj6.cif
#2/A SER 599, 8oj6.cif #2/A ALA 600, 8oj6.cif #2/A VAL 601, 8oj6.cif #2/A ALA
602, 8oj6.cif #2/A ARG 603, 8oj6.cif #2/A LEU 604, 8oj6.cif #2/A ALA 605,
8oj6.cif #2/A GLY 606, 8oj6.cif #2/A ILE 607, 8oj6.cif #2/A ASN 608, 8oj6.cif
#2/A ILE 609, 8oj6.cif #2/A THR 610, 8oj6.cif #2/A ARG 611, 8oj6.cif #2/A THR
612, 8oj6.cif #2/A ILE 613, 8oj6.cif #2/A TYR 614, 8oj6.cif #2/A ASP 615,
8oj6.cif #2/A GLY 616, 8oj6.cif #2/A GLN 617, 8oj6.cif #2/A GLN 618, 8oj6.cif
#2/A ILE 619, 8oj6.cif #2/A ARG 620, 8oj6.cif #2/A VAL 621, 8oj6.cif #2/A PHE
622, 8oj6.cif #2/A THR 623, 8oj6.cif #2/A CYS 624, 8oj6.cif #2/A LEU 625,
8oj6.cif #2/A LEU 626, 8oj6.cif #2/A ARG 627, 8oj6.cif #2/A LEU 628, 8oj6.cif
#2/A ALA 629, 8oj6.cif #2/A ASP 630, 8oj6.cif #2/A GLN 631, 8oj6.cif #2/A LYS
632, 8oj6.cif #2/A GLY 633, 8oj6.cif #2/A PHE 634, 8oj6.cif #2/A ILE 635,
8oj6.cif #2/A LEU 636, 8oj6.cif #2/A PRO 637, 8oj6.cif #2/A ASP 638, 8oj6.cif
#2/A THR 639, 8oj6.cif #2/A GLN 640, 8oj6.cif #2/A GLY 641, 8oj6.cif #2/A ARG
642, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, 8oj6.cif
#2/A ARG 692, 8oj6.cif #2/A HIS 693, 8oj6.cif #2/A VAL 694, 8oj6.cif #2/A GLY
695, 8oj6.cif #2/A TYR 696, 8oj6.cif #2/A GLN 697, 8oj6.cif #2/A GLY 698,
8oj6.cif #2/A ALA 699, 8oj6.cif #2/A ARG 700, 8oj6.cif #2/A VAL 701, 8oj6.cif
#2/A LEU 702, 8oj6.cif #2/A ASP 703, 8oj6.cif #2/A PRO 704, 8oj6.cif #2/A THR
705, 8oj6.cif #2/A SER 706, 8oj6.cif #2/A GLY 707, 8oj6.cif #2/A PHE 708,
8oj6.cif #2/A HIS 709, 8oj6.cif #2/A VAL 710, 8oj6.cif #2/A ASN 711, 8oj6.cif
#2/A PRO 712, 8oj6.cif #2/A VAL 713, 8oj6.cif #2/A VAL 714, 8oj6.cif #2/A VAL
715, 8oj6.cif #2/A PHE 716, 8oj6.cif #2/A ASP 717, 8oj6.cif #2/A PHE 718,
8oj6.cif #2/A ALA 719, 8oj6.cif #2/A SER 720, 8oj6.cif #2/A LEU 721, 8oj6.cif
#2/A TYR 722, 8oj6.cif #2/A PRO 723, 8oj6.cif #2/A SER 724, 8oj6.cif #2/A ILE
725, 8oj6.cif #2/A ILE 726, 8oj6.cif #2/A GLN 727, 8oj6.cif #2/A ALA 728,
8oj6.cif #2/A HIS 729, 8oj6.cif #2/A ASN 730, 8oj6.cif #2/A LEU 731, 8oj6.cif
#2/A CYS 732, 8oj6.cif #2/A PHE 733, 8oj6.cif #2/A SER 734, 8oj6.cif #2/A THR
735, 8oj6.cif #2/A LEU 736, 8oj6.cif #2/A SER 737, 8oj6.cif #2/A LEU 738,
8oj6.cif #2/A ARG 739, 8oj6.cif #2/A ALA 740, 8oj6.cif #2/A ASP 741, 8oj6.cif
#2/A ALA 742, 8oj6.cif #2/A VAL 743, 8oj6.cif #2/A ALA 744, 8oj6.cif #2/A HIS
745, 8oj6.cif #2/A LEU 746, 8oj6.cif #2/A GLU 747, 8oj6.cif #2/A ALA 748,
8oj6.cif #2/A GLY 749, 8oj6.cif #2/A LYS 750, 8oj6.cif #2/A ASP 751, 8oj6.cif
#2/A TYR 752, 8oj6.cif #2/A LEU 753, 8oj6.cif #2/A GLU 754, 8oj6.cif #2/A ILE
755, 8oj6.cif #2/A GLU 756, 8oj6.cif #2/A VAL 757, 8oj6.cif #2/A GLY 758,
8oj6.cif #2/A GLY 759, 8oj6.cif #2/A ARG 760, 8oj6.cif #2/A ARG 761, 8oj6.cif
#2/A LEU 762, 8oj6.cif #2/A PHE 763, 8oj6.cif #2/A PHE 764, 8oj6.cif #2/A VAL
765, 8oj6.cif #2/A LYS 766, 8oj6.cif #2/A ALA 767, 8oj6.cif #2/A HIS 768,
8oj6.cif #2/A VAL 769, 8oj6.cif #2/A ARG 770, 8oj6.cif #2/A GLU 771, 8oj6.cif
#2/A SER 772, 8oj6.cif #2/A LEU 773, 8oj6.cif #2/A LEU 774, 8oj6.cif #2/A SER
775, 8oj6.cif #2/A ILE 776, 8oj6.cif #2/A LEU 777, 8oj6.cif #2/A LEU 778,
8oj6.cif #2/A ARG 779, 8oj6.cif #2/A ASP 780, 8oj6.cif #2/A TRP 781, 8oj6.cif
#2/A LEU 782, 8oj6.cif #2/A ALA 783, 8oj6.cif #2/A MET 784, 8oj6.cif #2/A ARG
785, 8oj6.cif #2/A LYS 786, 8oj6.cif #2/A GLN 787, 8oj6.cif #2/A ILE 788,
8oj6.cif #2/A ARG 789, 8oj6.cif #2/A SER 790, 8oj6.cif #2/A ARG 791, 8oj6.cif
#2/A ILE 792, 8oj6.cif #2/A PRO 793, 8oj6.cif #2/A GLN 794, 8oj6.cif #2/A SER
795, 8oj6.cif #2/A SER 796, 8oj6.cif #2/A PRO 797, 8oj6.cif #2/A GLU 798,
8oj6.cif #2/A GLU 799, 8oj6.cif #2/A ALA 800, 8oj6.cif #2/A VAL 801, 8oj6.cif
#2/A LEU 802, 8oj6.cif #2/A LEU 803, 8oj6.cif #2/A ASP 804, 8oj6.cif #2/A LYS
805, 8oj6.cif #2/A GLN 806, 8oj6.cif #2/A GLN 807, 8oj6.cif #2/A ALA 808,
8oj6.cif #2/A ALA 809, 8oj6.cif #2/A ILE 810, 8oj6.cif #2/A LYS 811, 8oj6.cif
#2/A VAL 812, 8oj6.cif #2/A VAL 813, 8oj6.cif #2/A CYS 814, 8oj6.cif #2/A ASN
815, 8oj6.cif #2/A SER 816, 8oj6.cif #2/A VAL 817, 8oj6.cif #2/A TYR 818,
8oj6.cif #2/A GLY 819, 8oj6.cif #2/A PHE 820, 8oj6.cif #2/A THR 821, 8oj6.cif
#2/A GLY 822, 8oj6.cif #2/A VAL 823, 8oj6.cif #2/A GLN 824, 8oj6.cif #2/A HIS
825, 8oj6.cif #2/A GLY 826, 8oj6.cif #2/A LEU 827, 8oj6.cif #2/A LEU 828,
8oj6.cif #2/A PRO 829, 8oj6.cif #2/A CYS 830, 8oj6.cif #2/A LEU 831, 8oj6.cif
#2/A HIS 832, 8oj6.cif #2/A VAL 833, 8oj6.cif #2/A ALA 834, 8oj6.cif #2/A ALA
835, 8oj6.cif #2/A THR 836, 8oj6.cif #2/A VAL 837, 8oj6.cif #2/A THR 838,
8oj6.cif #2/A THR 839, 8oj6.cif #2/A ILE 840, 8oj6.cif #2/A GLY 841, 8oj6.cif
#2/A ARG 842, 8oj6.cif #2/A GLU 843, 8oj6.cif #2/A MET 844, 8oj6.cif #2/A LEU
845, 8oj6.cif #2/A LEU 846, 8oj6.cif #2/A ALA 847, 8oj6.cif #2/A THR 848,
8oj6.cif #2/A ARG 849, 8oj6.cif #2/A GLU 850, 8oj6.cif #2/A TYR 851, 8oj6.cif
#2/A VAL 852, 8oj6.cif #2/A HIS 853, 8oj6.cif #2/A ALA 854, 8oj6.cif #2/A ARG
855, 8oj6.cif #2/A TRP 856, 8oj6.cif #2/A ALA 857, 8oj6.cif #2/A ALA 858,
8oj6.cif #2/A PHE 859, 8oj6.cif #2/A GLU 860, 8oj6.cif #2/A GLN 861, 8oj6.cif
#2/A LEU 862, 8oj6.cif #2/A LEU 863, 8oj6.cif #2/A ALA 864, 8oj6.cif #2/A ASP
865, 8oj6.cif #2/A PHE 866, 8oj6.cif #2/A PRO 867, 8oj6.cif #2/A GLU 868,
8oj6.cif #2/A ALA 869, 8oj6.cif #2/A ALA 870, 8oj6.cif #2/A ASP 871, 8oj6.cif
#2/A MET 872, 8oj6.cif #2/A ARG 873, 8oj6.cif #2/A ALA 874, 8oj6.cif #2/A PRO
875, 8oj6.cif #2/A GLY 876, 8oj6.cif #2/A PRO 877, 8oj6.cif #2/A TYR 878,
8oj6.cif #2/A SER 879, 8oj6.cif #2/A MET 880, 8oj6.cif #2/A ARG 881, 8oj6.cif
#2/A ILE 882, 8oj6.cif #2/A ILE 883, 8oj6.cif #2/A TYR 884, 8oj6.cif #2/A GLY
885, 8oj6.cif #2/A ASP 886, 8oj6.cif #2/A THR 887, 8oj6.cif #2/A ASP 888,
8oj6.cif #2/A SER 889, 8oj6.cif #2/A ILE 890, 8oj6.cif #2/A PHE 891, 8oj6.cif
#2/A VAL 892, 8oj6.cif #2/A LEU 893, 8oj6.cif #2/A CYS 894, 8oj6.cif #2/A ARG
895, 8oj6.cif #2/A GLY 896, 8oj6.cif #2/A LEU 897, 8oj6.cif #2/A THR 898,
8oj6.cif #2/A ALA 899, 8oj6.cif #2/A ALA 900, 8oj6.cif #2/A GLY 901, 8oj6.cif
#2/A LEU 902, 8oj6.cif #2/A THR 903, 8oj6.cif #2/A ALA 904, 8oj6.cif #2/A VAL
905, 8oj6.cif #2/A GLY 906, 8oj6.cif #2/A ASP 907, 8oj6.cif #2/A LYS 908,
8oj6.cif #2/A MET 909, 8oj6.cif #2/A ALA 910, 8oj6.cif #2/A SER 911, 8oj6.cif
#2/A HIS 912, 8oj6.cif #2/A ILE 913, 8oj6.cif #2/A SER 914, 8oj6.cif #2/A ARG
915, 8oj6.cif #2/A ALA 916, 8oj6.cif #2/A LEU 917, 8oj6.cif #2/A PHE 918,
8oj6.cif #2/A LEU 919, 8oj6.cif #2/A PRO 920, 8oj6.cif #2/A PRO 921, 8oj6.cif
#2/A ILE 922, 8oj6.cif #2/A LYS 923, 8oj6.cif #2/A LEU 924, 8oj6.cif #2/A GLU
925, 8oj6.cif #2/A CYS 926, 8oj6.cif #2/A GLU 927, 8oj6.cif #2/A LYS 928,
8oj6.cif #2/A THR 929, 8oj6.cif #2/A PHE 930, 8oj6.cif #2/A THR 931, 8oj6.cif
#2/A LYS 932, 8oj6.cif #2/A LEU 933, 8oj6.cif #2/A LEU 934, 8oj6.cif #2/A LEU
935, 8oj6.cif #2/A ILE 936, 8oj6.cif #2/A ALA 937, 8oj6.cif #2/A LYS 938,
8oj6.cif #2/A LYS 939, 8oj6.cif #2/A LYS 940, 8oj6.cif #2/A TYR 941, 8oj6.cif
#2/A ILE 942, 8oj6.cif #2/A GLY 943, 8oj6.cif #2/A VAL 944, 8oj6.cif #2/A ILE
945, 8oj6.cif #2/A TYR 946, 8oj6.cif #2/A GLY 947, 8oj6.cif #2/A GLY 948,
8oj6.cif #2/A LYS 949, 8oj6.cif #2/A MET 950, 8oj6.cif #2/A LEU 951, 8oj6.cif
#2/A ILE 952, 8oj6.cif #2/A LYS 953, 8oj6.cif #2/A GLY 954, 8oj6.cif #2/A VAL
955, 8oj6.cif #2/A ASP 956, 8oj6.cif #2/A LEU 957, 8oj6.cif #2/A VAL 958,
8oj6.cif #2/A ARG 959, 8oj6.cif #2/A LYS 960, 8oj6.cif #2/A ASN 961, 8oj6.cif
#2/A ASN 962, 8oj6.cif #2/A CYS 963, 8oj6.cif #2/A ALA 964, 8oj6.cif #2/A PHE
965, 8oj6.cif #2/A ILE 966, 8oj6.cif #2/A ASN 967, 8oj6.cif #2/A ARG 968,
8oj6.cif #2/A THR 969, 8oj6.cif #2/A SER 970, 8oj6.cif #2/A ARG 971, 8oj6.cif
#2/A ALA 972, 8oj6.cif #2/A LEU 973, 8oj6.cif #2/A VAL 974, 8oj6.cif #2/A ASP
975, 8oj6.cif #2/A LEU 976, 8oj6.cif #2/A LEU 977, 8oj6.cif #2/A PHE 978,
8oj6.cif #2/A TYR 979, 8oj6.cif #2/A ASP 980, 8oj6.cif #2/A ASP 981, 8oj6.cif
#2/A THR 982, 8oj6.cif #2/A VAL 983, 8oj6.cif #2/A SER 984, 8oj6.cif #2/A GLY
985, 8oj6.cif #2/A ALA 986, 8oj6.cif #2/A ALA 987, 8oj6.cif #2/A ALA 988,
8oj6.cif #2/A ALA 989, 8oj6.cif #2/A LEU 990, 8oj6.cif #2/A ALA 991, 8oj6.cif
#2/A GLU 992, 8oj6.cif #2/A ARG 993, 8oj6.cif #2/A PRO 994, 8oj6.cif #2/A ALA
995, 8oj6.cif #2/A GLU 996, 8oj6.cif #2/A GLU 997, 8oj6.cif #2/A TRP 998,
8oj6.cif #2/A LEU 999, 8oj6.cif #2/A ALA 1000, 8oj6.cif #2/A ARG 1001,
8oj6.cif #2/A PRO 1002, 8oj6.cif #2/A LEU 1003, 8oj6.cif #2/A PRO 1004,
8oj6.cif #2/A GLU 1005, 8oj6.cif #2/A GLY 1006, 8oj6.cif #2/A LEU 1007,
8oj6.cif #2/A GLN 1008, 8oj6.cif #2/A ALA 1009, 8oj6.cif #2/A PHE 1010,
8oj6.cif #2/A GLY 1011, 8oj6.cif #2/A ALA 1012, 8oj6.cif #2/A VAL 1013,
8oj6.cif #2/A LEU 1014, 8oj6.cif #2/A VAL 1015, 8oj6.cif #2/A ASP 1016,
8oj6.cif #2/A ALA 1017, 8oj6.cif #2/A HIS 1018, 8oj6.cif #2/A ARG 1019,
8oj6.cif #2/A ARG 1020, 8oj6.cif #2/A ILE 1021, 8oj6.cif #2/A THR 1022,
8oj6.cif #2/A ASP 1023, 8oj6.cif #2/A PRO 1024, 8oj6.cif #2/A GLU 1025,
8oj6.cif #2/A ARG 1026, 8oj6.cif #2/A ASP 1027, 8oj6.cif #2/A ILE 1028,
8oj6.cif #2/A GLN 1029, 8oj6.cif #2/A ASP 1030, 8oj6.cif #2/A PHE 1031,
8oj6.cif #2/A VAL 1032, 8oj6.cif #2/A LEU 1033, 8oj6.cif #2/A THR 1034,
8oj6.cif #2/A ALA 1035, 8oj6.cif #2/A GLU 1036, 8oj6.cif #2/A LEU 1037,
8oj6.cif #2/A SER 1038, 8oj6.cif #2/A ARG 1039, 8oj6.cif #2/A HIS 1040,
8oj6.cif #2/A PRO 1041, 8oj6.cif #2/A ARG 1042, 8oj6.cif #2/A ALA 1043,
8oj6.cif #2/A TYR 1044, 8oj6.cif #2/A THR 1045, 8oj6.cif #2/A ASN 1046,
8oj6.cif #2/A LYS 1047, 8oj6.cif #2/A ARG 1048, 8oj6.cif #2/A LEU 1049,
8oj6.cif #2/A ALA 1050, 8oj6.cif #2/A HIS 1051, 8oj6.cif #2/A LEU 1052,
8oj6.cif #2/A THR 1053, 8oj6.cif #2/A VAL 1054, 8oj6.cif #2/A TYR 1055,
8oj6.cif #2/A TYR 1056, 8oj6.cif #2/A LYS 1057, 8oj6.cif #2/A LEU 1058,
8oj6.cif #2/A MET 1059, 8oj6.cif #2/A ALA 1060, 8oj6.cif #2/A ARG 1061,
8oj6.cif #2/A ARG 1062, 8oj6.cif #2/A ALA 1063, 8oj6.cif #2/A GLN 1064,
8oj6.cif #2/A VAL 1065, 8oj6.cif #2/A PRO 1066, 8oj6.cif #2/A SER 1067,
8oj6.cif #2/A ILE 1068, 8oj6.cif #2/A LYS 1069, 8oj6.cif #2/A ASP 1070,
8oj6.cif #2/A ARG 1071, 8oj6.cif #2/A ILE 1072, 8oj6.cif #2/A PRO 1073,
8oj6.cif #2/A TYR 1074, 8oj6.cif #2/A VAL 1075, 8oj6.cif #2/A ILE 1076,
8oj6.cif #2/A VAL 1077, 8oj6.cif #2/A ALA 1078, 8oj6.cif #2/A GLN 1079,
8oj6.cif #2/A THR 1080, 8oj6.cif #2/A ARG 1081, 8oj6.cif #2/A GLU 1082,
8oj6.cif #2/A VAL 1083, 8oj6.cif #2/A GLU 1084, 8oj6.cif #2/A GLU 1085,
8oj6.cif #2/A THR 1086, 8oj6.cif #2/A VAL 1087, 8oj6.cif #2/A ALA 1088,
8oj6.cif #2/A ARG 1089, 8oj6.cif #2/A LEU 1090, 8oj6.cif #2/A ALA 1091, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, 8oj6.cif #2/A ARG 1135, 8oj6.cif #2/A LYS 1136, 8oj6.cif
#2/A LEU 1137, 8oj6.cif #2/A LEU 1138, 8oj6.cif #2/A VAL 1139, 8oj6.cif #2/A
SER 1140, 8oj6.cif #2/A GLU 1141, 8oj6.cif #2/A LEU 1142, 8oj6.cif #2/A ALA
1143, 8oj6.cif #2/A GLU 1144, 8oj6.cif #2/A ASP 1145, 8oj6.cif #2/A PRO 1146,
8oj6.cif #2/A ALA 1147, 8oj6.cif #2/A TYR 1148, 8oj6.cif #2/A ALA 1149,
8oj6.cif #2/A ILE 1150, 8oj6.cif #2/A ALA 1151, 8oj6.cif #2/A HIS 1152,
8oj6.cif #2/A GLY 1153, 8oj6.cif #2/A VAL 1154, 8oj6.cif #2/A ALA 1155,
8oj6.cif #2/A LEU 1156, 8oj6.cif #2/A ASN 1157, 8oj6.cif #2/A THR 1158,
8oj6.cif #2/A ASP 1159, 8oj6.cif #2/A TYR 1160, 8oj6.cif #2/A TYR 1161,
8oj6.cif #2/A PHE 1162, 8oj6.cif #2/A SER 1163, 8oj6.cif #2/A HIS 1164,
8oj6.cif #2/A LEU 1165, 8oj6.cif #2/A LEU 1166, 8oj6.cif #2/A GLY 1167,
8oj6.cif #2/A ALA 1168, 8oj6.cif #2/A ALA 1169, 8oj6.cif #2/A CYS 1170,
8oj6.cif #2/A VAL 1171, 8oj6.cif #2/A THR 1172, 8oj6.cif #2/A PHE 1173,
8oj6.cif #2/A LYS 1174, 8oj6.cif #2/A ALA 1175, 8oj6.cif #2/A LEU 1176,
8oj6.cif #2/A PHE 1177, 8oj6.cif #2/A GLY 1178, 8oj6.cif #2/A ASN 1179,
8oj6.cif #2/A ASN 1180, 8oj6.cif #2/A ALA 1181, 8oj6.cif #2/A LYS 1182,
8oj6.cif #2/A ILE 1183, 8oj6.cif #2/A THR 1184, 8oj6.cif #2/A GLU 1185,
8oj6.cif #2/A SER 1186, 8oj6.cif #2/A LEU 1187, 8oj6.cif #2/A LEU 1188,
8oj6.cif #2/A LYS 1189, 8oj6.cif #2/A ARG 1190, 8oj6.cif #2/A PHE 1191,
8oj6.cif #2/A ILE 1192, 8oj6.cif #2/A PRO 1193, 8oj6.cif #2/A GLU 1194,
8oj6.cif #2/A VAL 1195, 8oj6.cif #2/A TRP 1196, 8oj6.cif #2/A HIS 1197,
8oj6.cif #2/A PRO 1198, 8oj6.cif #2/A PRO 1199, 8oj6.cif #2/A ASP 1200,
8oj6.cif #2/A ASP 1201, 8oj6.cif #2/A VAL 1202, 8oj6.cif #2/A ALA 1203,
8oj6.cif #2/A ALA 1204, 8oj6.cif #2/A ARG 1205, 8oj6.cif #2/A LEU 1206,
8oj6.cif #2/A ARG 1207, 8oj6.cif #2/A THR 1208, 8oj6.cif #2/A ALA 1209,
8oj6.cif #2/A GLY 1210, 8oj6.cif #2/A PHE 1211, 8oj6.cif #2/A GLY 1212,
8oj6.cif #2/A ALA 1213, 8oj6.cif #2/A VAL 1214, 8oj6.cif #2/A GLY 1215,
8oj6.cif #2/A ALA 1216, 8oj6.cif #2/A GLY 1217, 8oj6.cif #2/A ALA 1218,
8oj6.cif #2/A THR 1219, 8oj6.cif #2/A ALA 1220, 8oj6.cif #2/A GLU 1221,
8oj6.cif #2/A GLU 1222, 8oj6.cif #2/A THR 1223, 8oj6.cif #2/A ARG 1224,
8oj6.cif #2/A ARG 1225, 8oj6.cif #2/A MET 1226, 8oj6.cif #2/A LEU 1227,
8oj6.cif #2/A HIS 1228, 8oj6.cif #2/A ARG 1229, 8oj6.cif #2/A ALA 1230,
8oj6.cif #2/A PHE 1231, 8oj6.cif #2/A ASP 1232, 8oj6.cif #2/A THR 1233,
8oj6.cif #2/A LEU 1234, 8oj6.cif #2/A ALA 1235
Residue usage in match (1=used, 0=unused):
0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,
0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1,
0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0,
0, 0, 0, 0
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
> hide #!1.3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> open /Users/rslack/Downloads/8oj7.cif
Summary of feedback from opening /Users/rslack/Downloads/8oj7.cif
---
notes | Fetching CCD DOC from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/DOC/DOC.cif
Fetching CCD DTP from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/DTP/DTP.cif
8oj7.cif title:
HSV-1 DNA polymerase-processivity factor complex in halted elongation state
[more info...]
Chain information for 8oj7.cif #3
---
Chain | Description | UniProt
A | DNA polymerase catalytic subunit | DPOL_HHV11 1-1235
B | DNA polymerase processivity factor | PAP_HHV11 1-488
C | DNA (53-MER) |
D | DNA (67-MER) |
Non-standard residues in 8oj7.cif #3
---
DTP — 2'-deoxyadenosine 5'-triphosphate
MG — magnesium ion
Associated 8oj7.cif chain A to 8oj6.cif, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: EBV_Uma15.pdb #1/A, 8oj6.cif
#2/A, 8oj7.cif #3/A
> close #2
Chains used in RMSD evaluation for alignment 1: EBV_Uma15.pdb #1/A, 8oj7.cif
#3/A
> ui tool show Matchmaker
> matchmaker #!3 to #1/A pairing bs verbose true reportMatrix true
> showAlignment true
Computing secondary structure
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker EBV_Uma15.pdb, chain A (#1) with 8oj7.cif, chain A (#3), sequence
alignment score = 1193.6
Alignment identifier is 2
Chains used in RMSD evaluation for alignment 2: EBV_Uma15.pdb #1/A, 8oj7.cif
#3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Hiding conservation header for alignment 2
Alignment matrix in structure 8oj7.cif coordinates
Matrix rotation and translation
0.42957281 -0.33255587 -0.83956763 145.87852275
-0.33908198 -0.92109040 0.19135280 211.54801586
-0.83695318 0.20248229 -0.50843909 206.74996122
Axis 0.84544859 -0.19860614 -0.49575426
Axis point 0.00000000 122.52635915 146.54866937
Rotation angle (degrees) 179.62287647
Shift along axis -21.17911808
RMSD between 336 pruned atom pairs is 0.977 angstroms; (across all 451 pairs:
2.732)
Sequences:
EBV_Uma15.pdb, chain A
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IPCRRVLDDGQQIRVFSCLLAAAQKENFILP...............MPSASDRD..................................GYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYSTMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAETVTLQGRTMLERAKAFVEALSPANLQALAPSPDA...WAPLNPEGQLRVIYGDTDSLFIECRGFSESETLRFADALAAHTTRSLFVAPISLEAEKTFSCLMLITKKRYVGVLTDGKTLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLSHRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPHLAVYQKFVERNEELPQIHDRIQYVFV................................................EPKGGVKGAR...KTEMAEDPAYAERHGVPVAVDHYFDKLLQGAANILQCL...........................................................
8oj7.cif, chain A
MFSGGGGPLSPGGKSAARAASGFFAPAGPRGASRGPPPCLRQNFYNPYLAPVGTQQKPTGPTQRHTYYSECDEFRFIAPRVLDEDAPPEKRAGVHDGHLKRAPKVYCGGDERDVLRVGSGGFWPRRSRLWGGVDHAPAGFNPTVTVFHVYDILENVEHAYGMRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRA..DAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRI.PQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAP.GPYS.MRIIYGDTDSIFVLCRGLTAAGLTAVGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGGKMLIKGVDLVRKNNCAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSPADPPGGASKPRKLLVSELAEDPAYAIAHGVALNTDYYFSHLLGAACVTFKALFGNNAKITESLLKRFIPEVWHPPDDVAARLRTAGFGAVGAGATAEETRRMLHRAFDTLA
Residues:
EBV_Uma15.pdb #1/A ILE 1, EBV_Uma15.pdb #1/A PRO 2, EBV_Uma15.pdb #1/A CYS 3,
EBV_Uma15.pdb #1/A ARG 4, EBV_Uma15.pdb #1/A ARG 5, EBV_Uma15.pdb #1/A VAL 6,
EBV_Uma15.pdb #1/A LEU 7, EBV_Uma15.pdb #1/A ASP 8, EBV_Uma15.pdb #1/A ASP 9,
EBV_Uma15.pdb #1/A GLY 10, EBV_Uma15.pdb #1/A GLN 11, EBV_Uma15.pdb #1/A GLN
12, EBV_Uma15.pdb #1/A ILE 13, EBV_Uma15.pdb #1/A ARG 14, EBV_Uma15.pdb #1/A
VAL 15, EBV_Uma15.pdb #1/A PHE 16, EBV_Uma15.pdb #1/A SER 17, EBV_Uma15.pdb
#1/A CYS 18, EBV_Uma15.pdb #1/A LEU 19, EBV_Uma15.pdb #1/A LEU 20,
EBV_Uma15.pdb #1/A ALA 21, EBV_Uma15.pdb #1/A ALA 22, EBV_Uma15.pdb #1/A ALA
23, EBV_Uma15.pdb #1/A GLN 24, EBV_Uma15.pdb #1/A LYS 25, EBV_Uma15.pdb #1/A
GLU 26, EBV_Uma15.pdb #1/A ASN 27, EBV_Uma15.pdb #1/A PHE 28, EBV_Uma15.pdb
#1/A ILE 29, EBV_Uma15.pdb #1/A LEU 30, EBV_Uma15.pdb #1/A PRO 31,
EBV_Uma15.pdb #1/A MET 32, EBV_Uma15.pdb #1/A PRO 33, EBV_Uma15.pdb #1/A SER
34, EBV_Uma15.pdb #1/A ALA 35, EBV_Uma15.pdb #1/A SER 36, EBV_Uma15.pdb #1/A
ASP 37, EBV_Uma15.pdb #1/A ARG 38, EBV_Uma15.pdb #1/A ASP 39, EBV_Uma15.pdb
#1/A GLY 40, EBV_Uma15.pdb #1/A TYR 41, EBV_Uma15.pdb #1/A GLN 42,
EBV_Uma15.pdb #1/A GLY 43, EBV_Uma15.pdb #1/A ALA 44, EBV_Uma15.pdb #1/A THR
45, EBV_Uma15.pdb #1/A VAL 46, EBV_Uma15.pdb #1/A ILE 47, EBV_Uma15.pdb #1/A
GLN 48, EBV_Uma15.pdb #1/A PRO 49, EBV_Uma15.pdb #1/A LEU 50, EBV_Uma15.pdb
#1/A SER 51, EBV_Uma15.pdb #1/A GLY 52, EBV_Uma15.pdb #1/A PHE 53,
EBV_Uma15.pdb #1/A TYR 54, EBV_Uma15.pdb #1/A ASN 55, EBV_Uma15.pdb #1/A SER
56, EBV_Uma15.pdb #1/A PRO 57, EBV_Uma15.pdb #1/A VAL 58, EBV_Uma15.pdb #1/A
LEU 59, EBV_Uma15.pdb #1/A VAL 60, EBV_Uma15.pdb #1/A VAL 61, EBV_Uma15.pdb
#1/A ASP 62, EBV_Uma15.pdb #1/A PHE 63, EBV_Uma15.pdb #1/A ALA 64,
EBV_Uma15.pdb #1/A SER 65, EBV_Uma15.pdb #1/A LEU 66, EBV_Uma15.pdb #1/A TYR
67, EBV_Uma15.pdb #1/A PRO 68, EBV_Uma15.pdb #1/A SER 69, EBV_Uma15.pdb #1/A
ILE 70, EBV_Uma15.pdb #1/A ILE 71, EBV_Uma15.pdb #1/A GLN 72, EBV_Uma15.pdb
#1/A ALA 73, EBV_Uma15.pdb #1/A HIS 74, EBV_Uma15.pdb #1/A ASN 75,
EBV_Uma15.pdb #1/A LEU 76, EBV_Uma15.pdb #1/A CYS 77, EBV_Uma15.pdb #1/A TYR
78, EBV_Uma15.pdb #1/A SER 79, EBV_Uma15.pdb #1/A THR 80, EBV_Uma15.pdb #1/A
MET 81, EBV_Uma15.pdb #1/A ILE 82, EBV_Uma15.pdb #1/A THR 83, EBV_Uma15.pdb
#1/A PRO 84, EBV_Uma15.pdb #1/A GLY 85, EBV_Uma15.pdb #1/A GLU 86,
EBV_Uma15.pdb #1/A GLU 87, EBV_Uma15.pdb #1/A HIS 88, EBV_Uma15.pdb #1/A ARG
89, EBV_Uma15.pdb #1/A LEU 90, EBV_Uma15.pdb #1/A ALA 91, EBV_Uma15.pdb #1/A
GLY 92, EBV_Uma15.pdb #1/A LEU 93, EBV_Uma15.pdb #1/A ARG 94, EBV_Uma15.pdb
#1/A PRO 95, EBV_Uma15.pdb #1/A GLY 96, EBV_Uma15.pdb #1/A GLU 97,
EBV_Uma15.pdb #1/A ASP 98, EBV_Uma15.pdb #1/A TYR 99, EBV_Uma15.pdb #1/A GLU
100, EBV_Uma15.pdb #1/A SER 101, EBV_Uma15.pdb #1/A PHE 102, EBV_Uma15.pdb
#1/A ARG 103, EBV_Uma15.pdb #1/A LEU 104, EBV_Uma15.pdb #1/A THR 105,
EBV_Uma15.pdb #1/A GLY 106, EBV_Uma15.pdb #1/A GLY 107, EBV_Uma15.pdb #1/A VAL
108, EBV_Uma15.pdb #1/A TYR 109, EBV_Uma15.pdb #1/A HIS 110, EBV_Uma15.pdb
#1/A PHE 111, EBV_Uma15.pdb #1/A VAL 112, EBV_Uma15.pdb #1/A LYS 113,
EBV_Uma15.pdb #1/A LYS 114, EBV_Uma15.pdb #1/A HIS 115, EBV_Uma15.pdb #1/A VAL
116, EBV_Uma15.pdb #1/A HIS 117, EBV_Uma15.pdb #1/A GLU 118, EBV_Uma15.pdb
#1/A SER 119, EBV_Uma15.pdb #1/A PHE 120, EBV_Uma15.pdb #1/A LEU 121,
EBV_Uma15.pdb #1/A ALA 122, EBV_Uma15.pdb #1/A SER 123, EBV_Uma15.pdb #1/A LEU
124, EBV_Uma15.pdb #1/A LEU 125, EBV_Uma15.pdb #1/A THR 126, EBV_Uma15.pdb
#1/A SER 127, EBV_Uma15.pdb #1/A TRP 128, EBV_Uma15.pdb #1/A LEU 129,
EBV_Uma15.pdb #1/A ALA 130, EBV_Uma15.pdb #1/A LYS 131, EBV_Uma15.pdb #1/A ARG
132, EBV_Uma15.pdb #1/A LYS 133, EBV_Uma15.pdb #1/A ALA 134, EBV_Uma15.pdb
#1/A ILE 135, EBV_Uma15.pdb #1/A LYS 136, EBV_Uma15.pdb #1/A LYS 137,
EBV_Uma15.pdb #1/A LEU 138, EBV_Uma15.pdb #1/A LEU 139, EBV_Uma15.pdb #1/A ALA
140, EBV_Uma15.pdb #1/A ALA 141, EBV_Uma15.pdb #1/A CYS 142, EBV_Uma15.pdb
#1/A GLU 143, EBV_Uma15.pdb #1/A ASP 144, EBV_Uma15.pdb #1/A PRO 145,
EBV_Uma15.pdb #1/A ARG 146, EBV_Uma15.pdb #1/A GLN 147, EBV_Uma15.pdb #1/A ARG
148, EBV_Uma15.pdb #1/A THR 149, EBV_Uma15.pdb #1/A ILE 150, EBV_Uma15.pdb
#1/A LEU 151, EBV_Uma15.pdb #1/A ASP 152, EBV_Uma15.pdb #1/A LYS 153,
EBV_Uma15.pdb #1/A GLN 154, EBV_Uma15.pdb #1/A GLN 155, EBV_Uma15.pdb #1/A LEU
156, EBV_Uma15.pdb #1/A ALA 157, EBV_Uma15.pdb #1/A ILE 158, EBV_Uma15.pdb
#1/A LYS 159, EBV_Uma15.pdb #1/A CYS 160, EBV_Uma15.pdb #1/A THR 161,
EBV_Uma15.pdb #1/A CYS 162, EBV_Uma15.pdb #1/A ASN 163, EBV_Uma15.pdb #1/A ALA
164, EBV_Uma15.pdb #1/A VAL 165, EBV_Uma15.pdb #1/A TYR 166, EBV_Uma15.pdb
#1/A GLY 167, EBV_Uma15.pdb #1/A PHE 168, EBV_Uma15.pdb #1/A THR 169,
EBV_Uma15.pdb #1/A GLY 170, EBV_Uma15.pdb #1/A VAL 171, EBV_Uma15.pdb #1/A ALA
172, EBV_Uma15.pdb #1/A ASN 173, EBV_Uma15.pdb #1/A GLY 174, EBV_Uma15.pdb
#1/A LEU 175, EBV_Uma15.pdb #1/A PHE 176, EBV_Uma15.pdb #1/A PRO 177,
EBV_Uma15.pdb #1/A CYS 178, EBV_Uma15.pdb #1/A LEU 179, EBV_Uma15.pdb #1/A SER
180, EBV_Uma15.pdb #1/A ILE 181, EBV_Uma15.pdb #1/A ALA 182, EBV_Uma15.pdb
#1/A GLU 183, EBV_Uma15.pdb #1/A THR 184, EBV_Uma15.pdb #1/A VAL 185,
EBV_Uma15.pdb #1/A THR 186, EBV_Uma15.pdb #1/A LEU 187, EBV_Uma15.pdb #1/A GLN
188, EBV_Uma15.pdb #1/A GLY 189, EBV_Uma15.pdb #1/A ARG 190, EBV_Uma15.pdb
#1/A THR 191, EBV_Uma15.pdb #1/A MET 192, EBV_Uma15.pdb #1/A LEU 193,
EBV_Uma15.pdb #1/A GLU 194, EBV_Uma15.pdb #1/A ARG 195, EBV_Uma15.pdb #1/A ALA
196, EBV_Uma15.pdb #1/A LYS 197, EBV_Uma15.pdb #1/A ALA 198, EBV_Uma15.pdb
#1/A PHE 199, EBV_Uma15.pdb #1/A VAL 200, EBV_Uma15.pdb #1/A GLU 201,
EBV_Uma15.pdb #1/A ALA 202, EBV_Uma15.pdb #1/A LEU 203, EBV_Uma15.pdb #1/A SER
204, EBV_Uma15.pdb #1/A PRO 205, EBV_Uma15.pdb #1/A ALA 206, EBV_Uma15.pdb
#1/A ASN 207, EBV_Uma15.pdb #1/A LEU 208, EBV_Uma15.pdb #1/A GLN 209,
EBV_Uma15.pdb #1/A ALA 210, EBV_Uma15.pdb #1/A LEU 211, EBV_Uma15.pdb #1/A ALA
212, EBV_Uma15.pdb #1/A PRO 213, EBV_Uma15.pdb #1/A SER 214, EBV_Uma15.pdb
#1/A PRO 215, EBV_Uma15.pdb #1/A ASP 216, EBV_Uma15.pdb #1/A ALA 217,
EBV_Uma15.pdb #1/A TRP 218, EBV_Uma15.pdb #1/A ALA 219, EBV_Uma15.pdb #1/A PRO
220, EBV_Uma15.pdb #1/A LEU 221, EBV_Uma15.pdb #1/A ASN 222, EBV_Uma15.pdb
#1/A PRO 223, EBV_Uma15.pdb #1/A GLU 224, EBV_Uma15.pdb #1/A GLY 225,
EBV_Uma15.pdb #1/A GLN 226, EBV_Uma15.pdb #1/A LEU 227, EBV_Uma15.pdb #1/A ARG
228, EBV_Uma15.pdb #1/A VAL 229, EBV_Uma15.pdb #1/A ILE 230, EBV_Uma15.pdb
#1/A TYR 231, EBV_Uma15.pdb #1/A GLY 232, EBV_Uma15.pdb #1/A ASP 233,
EBV_Uma15.pdb #1/A THR 234, EBV_Uma15.pdb #1/A ASP 235, EBV_Uma15.pdb #1/A SER
236, EBV_Uma15.pdb #1/A LEU 237, EBV_Uma15.pdb #1/A PHE 238, EBV_Uma15.pdb
#1/A ILE 239, EBV_Uma15.pdb #1/A GLU 240, EBV_Uma15.pdb #1/A CYS 241,
EBV_Uma15.pdb #1/A ARG 242, EBV_Uma15.pdb #1/A GLY 243, EBV_Uma15.pdb #1/A PHE
244, EBV_Uma15.pdb #1/A SER 245, EBV_Uma15.pdb #1/A GLU 246, EBV_Uma15.pdb
#1/A SER 247, EBV_Uma15.pdb #1/A GLU 248, EBV_Uma15.pdb #1/A THR 249,
EBV_Uma15.pdb #1/A LEU 250, EBV_Uma15.pdb #1/A ARG 251, EBV_Uma15.pdb #1/A PHE
252, EBV_Uma15.pdb #1/A ALA 253, EBV_Uma15.pdb #1/A ASP 254, EBV_Uma15.pdb
#1/A ALA 255, EBV_Uma15.pdb #1/A LEU 256, EBV_Uma15.pdb #1/A ALA 257,
EBV_Uma15.pdb #1/A ALA 258, EBV_Uma15.pdb #1/A HIS 259, EBV_Uma15.pdb #1/A THR
260, EBV_Uma15.pdb #1/A THR 261, EBV_Uma15.pdb #1/A ARG 262, EBV_Uma15.pdb
#1/A SER 263, EBV_Uma15.pdb #1/A LEU 264, EBV_Uma15.pdb #1/A PHE 265,
EBV_Uma15.pdb #1/A VAL 266, EBV_Uma15.pdb #1/A ALA 267, EBV_Uma15.pdb #1/A PRO
268, EBV_Uma15.pdb #1/A ILE 269, EBV_Uma15.pdb #1/A SER 270, EBV_Uma15.pdb
#1/A LEU 271, EBV_Uma15.pdb #1/A GLU 272, EBV_Uma15.pdb #1/A ALA 273,
EBV_Uma15.pdb #1/A GLU 274, EBV_Uma15.pdb #1/A LYS 275, EBV_Uma15.pdb #1/A THR
276, EBV_Uma15.pdb #1/A PHE 277, EBV_Uma15.pdb #1/A SER 278, EBV_Uma15.pdb
#1/A CYS 279, EBV_Uma15.pdb #1/A LEU 280, EBV_Uma15.pdb #1/A MET 281,
EBV_Uma15.pdb #1/A LEU 282, EBV_Uma15.pdb #1/A ILE 283, EBV_Uma15.pdb #1/A THR
284, EBV_Uma15.pdb #1/A LYS 285, EBV_Uma15.pdb #1/A LYS 286, EBV_Uma15.pdb
#1/A ARG 287, EBV_Uma15.pdb #1/A TYR 288, EBV_Uma15.pdb #1/A VAL 289,
EBV_Uma15.pdb #1/A GLY 290, EBV_Uma15.pdb #1/A VAL 291, EBV_Uma15.pdb #1/A LEU
292, EBV_Uma15.pdb #1/A THR 293, EBV_Uma15.pdb #1/A ASP 294, EBV_Uma15.pdb
#1/A GLY 295, EBV_Uma15.pdb #1/A LYS 296, EBV_Uma15.pdb #1/A THR 297,
EBV_Uma15.pdb #1/A LEU 298, EBV_Uma15.pdb #1/A MET 299, EBV_Uma15.pdb #1/A LYS
300, EBV_Uma15.pdb #1/A GLY 301, EBV_Uma15.pdb #1/A VAL 302, EBV_Uma15.pdb
#1/A GLU 303, EBV_Uma15.pdb #1/A LEU 304, EBV_Uma15.pdb #1/A VAL 305,
EBV_Uma15.pdb #1/A ARG 306, EBV_Uma15.pdb #1/A LYS 307, EBV_Uma15.pdb #1/A THR
308, EBV_Uma15.pdb #1/A ALA 309, EBV_Uma15.pdb #1/A CYS 310, EBV_Uma15.pdb
#1/A LYS 311, EBV_Uma15.pdb #1/A PHE 312, EBV_Uma15.pdb #1/A VAL 313,
EBV_Uma15.pdb #1/A GLN 314, EBV_Uma15.pdb #1/A THR 315, EBV_Uma15.pdb #1/A ARG
316, EBV_Uma15.pdb #1/A CYS 317, EBV_Uma15.pdb #1/A ARG 318, EBV_Uma15.pdb
#1/A ARG 319, EBV_Uma15.pdb #1/A VAL 320, EBV_Uma15.pdb #1/A LEU 321,
EBV_Uma15.pdb #1/A ASP 322, EBV_Uma15.pdb #1/A LEU 323, EBV_Uma15.pdb #1/A VAL
324, EBV_Uma15.pdb #1/A LEU 325, EBV_Uma15.pdb #1/A ALA 326, EBV_Uma15.pdb
#1/A ASP 327, EBV_Uma15.pdb #1/A ALA 328, EBV_Uma15.pdb #1/A ARG 329,
EBV_Uma15.pdb #1/A VAL 330, EBV_Uma15.pdb #1/A LYS 331, EBV_Uma15.pdb #1/A GLU
332, EBV_Uma15.pdb #1/A ALA 333, EBV_Uma15.pdb #1/A ALA 334, EBV_Uma15.pdb
#1/A SER 335, EBV_Uma15.pdb #1/A LEU 336, EBV_Uma15.pdb #1/A LEU 337,
EBV_Uma15.pdb #1/A SER 338, EBV_Uma15.pdb #1/A HIS 339, EBV_Uma15.pdb #1/A ARG
340, EBV_Uma15.pdb #1/A PRO 341, EBV_Uma15.pdb #1/A PHE 342, EBV_Uma15.pdb
#1/A GLN 343, EBV_Uma15.pdb #1/A GLU 344, EBV_Uma15.pdb #1/A SER 345,
EBV_Uma15.pdb #1/A PHE 346, EBV_Uma15.pdb #1/A THR 347, EBV_Uma15.pdb #1/A GLN
348, EBV_Uma15.pdb #1/A GLY 349, EBV_Uma15.pdb #1/A LEU 350, EBV_Uma15.pdb
#1/A PRO 351, EBV_Uma15.pdb #1/A VAL 352, EBV_Uma15.pdb #1/A GLY 353,
EBV_Uma15.pdb #1/A PHE 354, EBV_Uma15.pdb #1/A LEU 355, EBV_Uma15.pdb #1/A PRO
356, EBV_Uma15.pdb #1/A VAL 357, EBV_Uma15.pdb #1/A ILE 358, EBV_Uma15.pdb
#1/A ASP 359, EBV_Uma15.pdb #1/A ILE 360, EBV_Uma15.pdb #1/A LEU 361,
EBV_Uma15.pdb #1/A ASN 362, EBV_Uma15.pdb #1/A GLN 363, EBV_Uma15.pdb #1/A ALA
364, EBV_Uma15.pdb #1/A TYR 365, EBV_Uma15.pdb #1/A THR 366, EBV_Uma15.pdb
#1/A ASP 367, EBV_Uma15.pdb #1/A LEU 368, EBV_Uma15.pdb #1/A ARG 369,
EBV_Uma15.pdb #1/A GLU 370, EBV_Uma15.pdb #1/A GLY 371, EBV_Uma15.pdb #1/A ARG
372, EBV_Uma15.pdb #1/A VAL 373, EBV_Uma15.pdb #1/A PRO 374, EBV_Uma15.pdb
#1/A MET 375, EBV_Uma15.pdb #1/A GLY 376, EBV_Uma15.pdb #1/A GLU 377,
EBV_Uma15.pdb #1/A LEU 378, EBV_Uma15.pdb #1/A CYS 379, EBV_Uma15.pdb #1/A PHE
380, EBV_Uma15.pdb #1/A SER 381, EBV_Uma15.pdb #1/A THR 382, EBV_Uma15.pdb
#1/A GLU 383, EBV_Uma15.pdb #1/A LEU 384, EBV_Uma15.pdb #1/A SER 385,
EBV_Uma15.pdb #1/A ARG 386, EBV_Uma15.pdb #1/A LYS 387, EBV_Uma15.pdb #1/A LEU
388, EBV_Uma15.pdb #1/A SER 389, EBV_Uma15.pdb #1/A ALA 390, EBV_Uma15.pdb
#1/A TYR 391, EBV_Uma15.pdb #1/A LYS 392, EBV_Uma15.pdb #1/A SER 393,
EBV_Uma15.pdb #1/A THR 394, EBV_Uma15.pdb #1/A GLN 395, EBV_Uma15.pdb #1/A MET
396, EBV_Uma15.pdb #1/A PRO 397, EBV_Uma15.pdb #1/A HIS 398, EBV_Uma15.pdb
#1/A LEU 399, EBV_Uma15.pdb #1/A ALA 400, EBV_Uma15.pdb #1/A VAL 401,
EBV_Uma15.pdb #1/A TYR 402, EBV_Uma15.pdb #1/A GLN 403, EBV_Uma15.pdb #1/A LYS
404, EBV_Uma15.pdb #1/A PHE 405, EBV_Uma15.pdb #1/A VAL 406, EBV_Uma15.pdb
#1/A GLU 407, EBV_Uma15.pdb #1/A ARG 408, EBV_Uma15.pdb #1/A ASN 409,
EBV_Uma15.pdb #1/A GLU 410, EBV_Uma15.pdb #1/A GLU 411, EBV_Uma15.pdb #1/A LEU
412, EBV_Uma15.pdb #1/A PRO 413, EBV_Uma15.pdb #1/A GLN 414, EBV_Uma15.pdb
#1/A ILE 415, EBV_Uma15.pdb #1/A HIS 416, EBV_Uma15.pdb #1/A ASP 417,
EBV_Uma15.pdb #1/A ARG 418, EBV_Uma15.pdb #1/A ILE 419, EBV_Uma15.pdb #1/A GLN
420, EBV_Uma15.pdb #1/A TYR 421, EBV_Uma15.pdb #1/A VAL 422, EBV_Uma15.pdb
#1/A PHE 423, EBV_Uma15.pdb #1/A VAL 424, EBV_Uma15.pdb #1/A GLU 425,
EBV_Uma15.pdb #1/A PRO 426, EBV_Uma15.pdb #1/A LYS 427, EBV_Uma15.pdb #1/A GLY
428, EBV_Uma15.pdb #1/A GLY 429, EBV_Uma15.pdb #1/A VAL 430, EBV_Uma15.pdb
#1/A LYS 431, EBV_Uma15.pdb #1/A GLY 432, EBV_Uma15.pdb #1/A ALA 433,
EBV_Uma15.pdb #1/A ARG 434, EBV_Uma15.pdb #1/A LYS 435, EBV_Uma15.pdb #1/A THR
436, EBV_Uma15.pdb #1/A GLU 437, EBV_Uma15.pdb #1/A MET 438, EBV_Uma15.pdb
#1/A ALA 439, EBV_Uma15.pdb #1/A GLU 440, EBV_Uma15.pdb #1/A ASP 441,
EBV_Uma15.pdb #1/A PRO 442, EBV_Uma15.pdb #1/A ALA 443, EBV_Uma15.pdb #1/A TYR
444, EBV_Uma15.pdb #1/A ALA 445, EBV_Uma15.pdb #1/A GLU 446, EBV_Uma15.pdb
#1/A ARG 447, EBV_Uma15.pdb #1/A HIS 448, EBV_Uma15.pdb #1/A GLY 449,
EBV_Uma15.pdb #1/A VAL 450, EBV_Uma15.pdb #1/A PRO 451, EBV_Uma15.pdb #1/A VAL
452, EBV_Uma15.pdb #1/A ALA 453, EBV_Uma15.pdb #1/A VAL 454, EBV_Uma15.pdb
#1/A ASP 455, EBV_Uma15.pdb #1/A HIS 456, EBV_Uma15.pdb #1/A TYR 457,
EBV_Uma15.pdb #1/A PHE 458, EBV_Uma15.pdb #1/A ASP 459, EBV_Uma15.pdb #1/A LYS
460, EBV_Uma15.pdb #1/A LEU 461, EBV_Uma15.pdb #1/A LEU 462, EBV_Uma15.pdb
#1/A GLN 463, EBV_Uma15.pdb #1/A GLY 464, EBV_Uma15.pdb #1/A ALA 465,
EBV_Uma15.pdb #1/A ALA 466, EBV_Uma15.pdb #1/A ASN 467, EBV_Uma15.pdb #1/A ILE
468, EBV_Uma15.pdb #1/A LEU 469, EBV_Uma15.pdb #1/A GLN 470, EBV_Uma15.pdb
#1/A CYS 471, EBV_Uma15.pdb #1/A LEU 472
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, 8oj7.cif #3/A THR 59, 8oj7.cif #3/A GLY
60, 8oj7.cif #3/A PRO 61, 8oj7.cif #3/A THR 62, 8oj7.cif #3/A GLN 63, 8oj7.cif
#3/A ARG 64, 8oj7.cif #3/A HIS 65, 8oj7.cif #3/A THR 66, 8oj7.cif #3/A TYR 67,
8oj7.cif #3/A TYR 68, 8oj7.cif #3/A SER 69, 8oj7.cif #3/A GLU 70, 8oj7.cif
#3/A CYS 71, 8oj7.cif #3/A ASP 72, 8oj7.cif #3/A GLU 73, 8oj7.cif #3/A PHE 74,
8oj7.cif #3/A ARG 75, 8oj7.cif #3/A PHE 76, 8oj7.cif #3/A ILE 77, 8oj7.cif
#3/A ALA 78, 8oj7.cif #3/A PRO 79, 8oj7.cif #3/A ARG 80, 8oj7.cif #3/A VAL 81,
8oj7.cif #3/A LEU 82, 8oj7.cif #3/A ASP 83, 8oj7.cif #3/A GLU 84, 8oj7.cif
#3/A ASP 85, 8oj7.cif #3/A ALA 86, 8oj7.cif #3/A PRO 87, 8oj7.cif #3/A PRO 88,
8oj7.cif #3/A GLU 89, 8oj7.cif #3/A LYS 90, 8oj7.cif #3/A ARG 91, 8oj7.cif
#3/A ALA 92, 8oj7.cif #3/A GLY 93, 8oj7.cif #3/A VAL 94, 8oj7.cif #3/A HIS 95,
8oj7.cif #3/A ASP 96, 8oj7.cif #3/A GLY 97, 8oj7.cif #3/A HIS 98, 8oj7.cif
#3/A LEU 99, 8oj7.cif #3/A LYS 100, 8oj7.cif #3/A ARG 101, 8oj7.cif #3/A ALA
102, 8oj7.cif #3/A PRO 103, 8oj7.cif #3/A LYS 104, 8oj7.cif #3/A VAL 105,
8oj7.cif #3/A TYR 106, 8oj7.cif #3/A CYS 107, 8oj7.cif #3/A GLY 108, 8oj7.cif
#3/A GLY 109, 8oj7.cif #3/A ASP 110, 8oj7.cif #3/A GLU 111, 8oj7.cif #3/A ARG
112, 8oj7.cif #3/A ASP 113, 8oj7.cif #3/A VAL 114, 8oj7.cif #3/A LEU 115,
8oj7.cif #3/A ARG 116, 8oj7.cif #3/A VAL 117, 8oj7.cif #3/A GLY 118, 8oj7.cif
#3/A SER 119, 8oj7.cif #3/A GLY 120, 8oj7.cif #3/A GLY 121, 8oj7.cif #3/A PHE
122, 8oj7.cif #3/A TRP 123, 8oj7.cif #3/A PRO 124, 8oj7.cif #3/A ARG 125,
8oj7.cif #3/A ARG 126, 8oj7.cif #3/A SER 127, 8oj7.cif #3/A ARG 128, 8oj7.cif
#3/A LEU 129, 8oj7.cif #3/A TRP 130, 8oj7.cif #3/A GLY 131, 8oj7.cif #3/A GLY
132, 8oj7.cif #3/A VAL 133, 8oj7.cif #3/A ASP 134, 8oj7.cif #3/A HIS 135,
8oj7.cif #3/A ALA 136, 8oj7.cif #3/A PRO 137, 8oj7.cif #3/A ALA 138, 8oj7.cif
#3/A GLY 139, 8oj7.cif #3/A PHE 140, 8oj7.cif #3/A ASN 141, 8oj7.cif #3/A PRO
142, 8oj7.cif #3/A THR 143, 8oj7.cif #3/A VAL 144, 8oj7.cif #3/A THR 145,
8oj7.cif #3/A VAL 146, 8oj7.cif #3/A PHE 147, 8oj7.cif #3/A HIS 148, 8oj7.cif
#3/A VAL 149, 8oj7.cif #3/A TYR 150, 8oj7.cif #3/A ASP 151, 8oj7.cif #3/A ILE
152, 8oj7.cif #3/A LEU 153, 8oj7.cif #3/A GLU 154, 8oj7.cif #3/A ASN 155,
8oj7.cif #3/A VAL 156, 8oj7.cif #3/A GLU 157, 8oj7.cif #3/A HIS 158, 8oj7.cif
#3/A ALA 159, 8oj7.cif #3/A TYR 160, 8oj7.cif #3/A GLY 161, 8oj7.cif #3/A MET
162, 8oj7.cif #3/A ARG 163, 8oj7.cif #3/A ALA 164, 8oj7.cif #3/A ALA 165,
8oj7.cif #3/A GLN 166, 8oj7.cif #3/A PHE 167, 8oj7.cif #3/A HIS 168, 8oj7.cif
#3/A ALA 169, 8oj7.cif #3/A ARG 170, 8oj7.cif #3/A PHE 171, 8oj7.cif #3/A MET
172, 8oj7.cif #3/A ASP 173, 8oj7.cif #3/A ALA 174, 8oj7.cif #3/A ILE 175,
8oj7.cif #3/A THR 176, 8oj7.cif #3/A PRO 177, 8oj7.cif #3/A THR 178, 8oj7.cif
#3/A GLY 179, 8oj7.cif #3/A THR 180, 8oj7.cif #3/A VAL 181, 8oj7.cif #3/A ILE
182, 8oj7.cif #3/A THR 183, 8oj7.cif #3/A LEU 184, 8oj7.cif #3/A LEU 185,
8oj7.cif #3/A GLY 186, 8oj7.cif #3/A LEU 187, 8oj7.cif #3/A THR 188, 8oj7.cif
#3/A PRO 189, 8oj7.cif #3/A GLU 190, 8oj7.cif #3/A GLY 191, 8oj7.cif #3/A HIS
192, 8oj7.cif #3/A ARG 193, 8oj7.cif #3/A VAL 194, 8oj7.cif #3/A ALA 195,
8oj7.cif #3/A VAL 196, 8oj7.cif #3/A HIS 197, 8oj7.cif #3/A VAL 198, 8oj7.cif
#3/A TYR 199, 8oj7.cif #3/A GLY 200, 8oj7.cif #3/A THR 201, 8oj7.cif #3/A ARG
202, 8oj7.cif #3/A GLN 203, 8oj7.cif #3/A TYR 204, 8oj7.cif #3/A PHE 205,
8oj7.cif #3/A TYR 206, 8oj7.cif #3/A MET 207, 8oj7.cif #3/A ASN 208, 8oj7.cif
#3/A LYS 209, 8oj7.cif #3/A GLU 210, 8oj7.cif #3/A GLU 211, 8oj7.cif #3/A VAL
212, 8oj7.cif #3/A ASP 213, 8oj7.cif #3/A ARG 214, 8oj7.cif #3/A HIS 215,
8oj7.cif #3/A LEU 216, 8oj7.cif #3/A GLN 217, 8oj7.cif #3/A CYS 218, 8oj7.cif
#3/A ARG 219, 8oj7.cif #3/A ALA 220, 8oj7.cif #3/A PRO 221, 8oj7.cif #3/A ARG
222, 8oj7.cif #3/A ASP 223, 8oj7.cif #3/A LEU 224, 8oj7.cif #3/A CYS 225,
8oj7.cif #3/A GLU 226, 8oj7.cif #3/A ARG 227, 8oj7.cif #3/A MET 228, 8oj7.cif
#3/A ALA 229, 8oj7.cif #3/A ALA 230, 8oj7.cif #3/A ALA 231, 8oj7.cif #3/A LEU
232, 8oj7.cif #3/A ARG 233, 8oj7.cif #3/A GLU 234, 8oj7.cif #3/A SER 235,
8oj7.cif #3/A PRO 236, 8oj7.cif #3/A GLY 237, 8oj7.cif #3/A ALA 238, 8oj7.cif
#3/A SER 239, 8oj7.cif #3/A PHE 240, 8oj7.cif #3/A ARG 241, 8oj7.cif #3/A GLY
242, 8oj7.cif #3/A ILE 243, 8oj7.cif #3/A SER 244, 8oj7.cif #3/A ALA 245,
8oj7.cif #3/A ASP 246, 8oj7.cif #3/A HIS 247, 8oj7.cif #3/A PHE 248, 8oj7.cif
#3/A GLU 249, 8oj7.cif #3/A ALA 250, 8oj7.cif #3/A GLU 251, 8oj7.cif #3/A VAL
252, 8oj7.cif #3/A VAL 253, 8oj7.cif #3/A GLU 254, 8oj7.cif #3/A ARG 255,
8oj7.cif #3/A THR 256, 8oj7.cif #3/A ASP 257, 8oj7.cif #3/A VAL 258, 8oj7.cif
#3/A TYR 259, 8oj7.cif #3/A TYR 260, 8oj7.cif #3/A TYR 261, 8oj7.cif #3/A GLU
262, 8oj7.cif #3/A THR 263, 8oj7.cif #3/A ARG 264, 8oj7.cif #3/A PRO 265,
8oj7.cif #3/A ALA 266, 8oj7.cif #3/A LEU 267, 8oj7.cif #3/A PHE 268, 8oj7.cif
#3/A TYR 269, 8oj7.cif #3/A ARG 270, 8oj7.cif #3/A VAL 271, 8oj7.cif #3/A TYR
272, 8oj7.cif #3/A VAL 273, 8oj7.cif #3/A ARG 274, 8oj7.cif #3/A SER 275,
8oj7.cif #3/A GLY 276, 8oj7.cif #3/A ARG 277, 8oj7.cif #3/A VAL 278, 8oj7.cif
#3/A LEU 279, 8oj7.cif #3/A SER 280, 8oj7.cif #3/A TYR 281, 8oj7.cif #3/A LEU
282, 8oj7.cif #3/A CYS 283, 8oj7.cif #3/A ASP 284, 8oj7.cif #3/A ASN 285,
8oj7.cif #3/A PHE 286, 8oj7.cif #3/A CYS 287, 8oj7.cif #3/A PRO 288, 8oj7.cif
#3/A ALA 289, 8oj7.cif #3/A ILE 290, 8oj7.cif #3/A LYS 291, 8oj7.cif #3/A LYS
292, 8oj7.cif #3/A TYR 293, 8oj7.cif #3/A GLU 294, 8oj7.cif #3/A GLY 295,
8oj7.cif #3/A GLY 296, 8oj7.cif #3/A VAL 297, 8oj7.cif #3/A ASP 298, 8oj7.cif
#3/A ALA 299, 8oj7.cif #3/A THR 300, 8oj7.cif #3/A THR 301, 8oj7.cif #3/A ARG
302, 8oj7.cif #3/A PHE 303, 8oj7.cif #3/A ILE 304, 8oj7.cif #3/A LEU 305,
8oj7.cif #3/A ASP 306, 8oj7.cif #3/A ASN 307, 8oj7.cif #3/A PRO 308, 8oj7.cif
#3/A GLY 309, 8oj7.cif #3/A PHE 310, 8oj7.cif #3/A VAL 311, 8oj7.cif #3/A THR
312, 8oj7.cif #3/A PHE 313, 8oj7.cif #3/A GLY 314, 8oj7.cif #3/A TRP 315,
8oj7.cif #3/A TYR 316, 8oj7.cif #3/A ARG 317, 8oj7.cif #3/A LEU 318, 8oj7.cif
#3/A LYS 319, 8oj7.cif #3/A PRO 320, 8oj7.cif #3/A GLY 321, 8oj7.cif #3/A ARG
322, 8oj7.cif #3/A ASN 323, 8oj7.cif #3/A ASN 324, 8oj7.cif #3/A THR 325,
8oj7.cif #3/A LEU 326, 8oj7.cif #3/A ALA 327, 8oj7.cif #3/A GLN 328, 8oj7.cif
#3/A PRO 329, 8oj7.cif #3/A ARG 330, 8oj7.cif #3/A ALA 331, 8oj7.cif #3/A PRO
332, 8oj7.cif #3/A MET 333, 8oj7.cif #3/A ALA 334, 8oj7.cif #3/A PHE 335,
8oj7.cif #3/A GLY 336, 8oj7.cif #3/A THR 337, 8oj7.cif #3/A SER 338, 8oj7.cif
#3/A SER 339, 8oj7.cif #3/A ASP 340, 8oj7.cif #3/A VAL 341, 8oj7.cif #3/A GLU
342, 8oj7.cif #3/A PHE 343, 8oj7.cif #3/A ASN 344, 8oj7.cif #3/A CYS 345,
8oj7.cif #3/A THR 346, 8oj7.cif #3/A ALA 347, 8oj7.cif #3/A ASP 348, 8oj7.cif
#3/A ASN 349, 8oj7.cif #3/A LEU 350, 8oj7.cif #3/A ALA 351, 8oj7.cif #3/A ILE
352, 8oj7.cif #3/A GLU 353, 8oj7.cif #3/A GLY 354, 8oj7.cif #3/A GLY 355,
8oj7.cif #3/A MET 356, 8oj7.cif #3/A SER 357, 8oj7.cif #3/A ASP 358, 8oj7.cif
#3/A LEU 359, 8oj7.cif #3/A PRO 360, 8oj7.cif #3/A ALA 361, 8oj7.cif #3/A TYR
362, 8oj7.cif #3/A LYS 363, 8oj7.cif #3/A LEU 364, 8oj7.cif #3/A MET 365,
8oj7.cif #3/A CYS 366, 8oj7.cif #3/A PHE 367, 8oj7.cif #3/A ASP 368, 8oj7.cif
#3/A ILE 369, 8oj7.cif #3/A GLU 370, 8oj7.cif #3/A CYS 371, 8oj7.cif #3/A LYS
372, 8oj7.cif #3/A ALA 373, 8oj7.cif #3/A GLY 374, 8oj7.cif #3/A GLY 375,
8oj7.cif #3/A GLU 376, 8oj7.cif #3/A ASP 377, 8oj7.cif #3/A GLU 378, 8oj7.cif
#3/A LEU 379, 8oj7.cif #3/A ALA 380, 8oj7.cif #3/A PHE 381, 8oj7.cif #3/A PRO
382, 8oj7.cif #3/A VAL 383, 8oj7.cif #3/A ALA 384, 8oj7.cif #3/A GLY 385,
8oj7.cif #3/A HIS 386, 8oj7.cif #3/A PRO 387, 8oj7.cif #3/A GLU 388, 8oj7.cif
#3/A ASP 389, 8oj7.cif #3/A LEU 390, 8oj7.cif #3/A VAL 391, 8oj7.cif #3/A ILE
392, 8oj7.cif #3/A GLN 393, 8oj7.cif #3/A ILE 394, 8oj7.cif #3/A SER 395,
8oj7.cif #3/A CYS 396, 8oj7.cif #3/A LEU 397, 8oj7.cif #3/A LEU 398, 8oj7.cif
#3/A TYR 399, 8oj7.cif #3/A ASP 400, 8oj7.cif #3/A LEU 401, 8oj7.cif #3/A SER
402, 8oj7.cif #3/A THR 403, 8oj7.cif #3/A THR 404, 8oj7.cif #3/A ALA 405,
8oj7.cif #3/A LEU 406, 8oj7.cif #3/A GLU 407, 8oj7.cif #3/A HIS 408, 8oj7.cif
#3/A VAL 409, 8oj7.cif #3/A LEU 410, 8oj7.cif #3/A LEU 411, 8oj7.cif #3/A PHE
412, 8oj7.cif #3/A SER 413, 8oj7.cif #3/A LEU 414, 8oj7.cif #3/A GLY 415,
8oj7.cif #3/A SER 416, 8oj7.cif #3/A CYS 417, 8oj7.cif #3/A ASP 418, 8oj7.cif
#3/A LEU 419, 8oj7.cif #3/A PRO 420, 8oj7.cif #3/A GLU 421, 8oj7.cif #3/A SER
422, 8oj7.cif #3/A HIS 423, 8oj7.cif #3/A LEU 424, 8oj7.cif #3/A ASN 425,
8oj7.cif #3/A GLU 426, 8oj7.cif #3/A LEU 427, 8oj7.cif #3/A ALA 428, 8oj7.cif
#3/A ALA 429, 8oj7.cif #3/A ARG 430, 8oj7.cif #3/A GLY 431, 8oj7.cif #3/A LEU
432, 8oj7.cif #3/A PRO 433, 8oj7.cif #3/A THR 434, 8oj7.cif #3/A PRO 435,
8oj7.cif #3/A VAL 436, 8oj7.cif #3/A VAL 437, 8oj7.cif #3/A LEU 438, 8oj7.cif
#3/A GLU 439, 8oj7.cif #3/A PHE 440, 8oj7.cif #3/A ASP 441, 8oj7.cif #3/A SER
442, 8oj7.cif #3/A GLU 443, 8oj7.cif #3/A PHE 444, 8oj7.cif #3/A GLU 445,
8oj7.cif #3/A MET 446, 8oj7.cif #3/A LEU 447, 8oj7.cif #3/A LEU 448, 8oj7.cif
#3/A ALA 449, 8oj7.cif #3/A PHE 450, 8oj7.cif #3/A MET 451, 8oj7.cif #3/A THR
452, 8oj7.cif #3/A LEU 453, 8oj7.cif #3/A VAL 454, 8oj7.cif #3/A LYS 455,
8oj7.cif #3/A GLN 456, 8oj7.cif #3/A TYR 457, 8oj7.cif #3/A GLY 458, 8oj7.cif
#3/A PRO 459, 8oj7.cif #3/A GLU 460, 8oj7.cif #3/A PHE 461, 8oj7.cif #3/A VAL
462, 8oj7.cif #3/A THR 463, 8oj7.cif #3/A GLY 464, 8oj7.cif #3/A TYR 465,
8oj7.cif #3/A ASN 466, 8oj7.cif #3/A ILE 467, 8oj7.cif #3/A ILE 468, 8oj7.cif
#3/A ASN 469, 8oj7.cif #3/A PHE 470, 8oj7.cif #3/A ASP 471, 8oj7.cif #3/A TRP
472, 8oj7.cif #3/A PRO 473, 8oj7.cif #3/A PHE 474, 8oj7.cif #3/A LEU 475,
8oj7.cif #3/A LEU 476, 8oj7.cif #3/A ALA 477, 8oj7.cif #3/A LYS 478, 8oj7.cif
#3/A LEU 479, 8oj7.cif #3/A THR 480, 8oj7.cif #3/A ASP 481, 8oj7.cif #3/A ILE
482, 8oj7.cif #3/A TYR 483, 8oj7.cif #3/A LYS 484, 8oj7.cif #3/A VAL 485,
8oj7.cif #3/A PRO 486, 8oj7.cif #3/A LEU 487, 8oj7.cif #3/A ASP 488, 8oj7.cif
#3/A GLY 489, 8oj7.cif #3/A TYR 490, 8oj7.cif #3/A GLY 491, 8oj7.cif #3/A ARG
492, 8oj7.cif #3/A MET 493, 8oj7.cif #3/A ASN 494, 8oj7.cif #3/A GLY 495,
8oj7.cif #3/A ARG 496, 8oj7.cif #3/A GLY 497, 8oj7.cif #3/A VAL 498, 8oj7.cif
#3/A PHE 499, 8oj7.cif #3/A ARG 500, 8oj7.cif #3/A VAL 501, 8oj7.cif #3/A TRP
502, 8oj7.cif #3/A ASP 503, 8oj7.cif #3/A ILE 504, 8oj7.cif #3/A GLY 505,
8oj7.cif #3/A GLN 506, 8oj7.cif #3/A SER 507, 8oj7.cif #3/A HIS 508, 8oj7.cif
#3/A PHE 509, 8oj7.cif #3/A GLN 510, 8oj7.cif #3/A LYS 511, 8oj7.cif #3/A ARG
512, 8oj7.cif #3/A SER 513, 8oj7.cif #3/A LYS 514, 8oj7.cif #3/A ILE 515,
8oj7.cif #3/A LYS 516, 8oj7.cif #3/A VAL 517, 8oj7.cif #3/A ASN 518, 8oj7.cif
#3/A GLY 519, 8oj7.cif #3/A MET 520, 8oj7.cif #3/A VAL 521, 8oj7.cif #3/A ASN
522, 8oj7.cif #3/A ILE 523, 8oj7.cif #3/A ASP 524, 8oj7.cif #3/A MET 525,
8oj7.cif #3/A TYR 526, 8oj7.cif #3/A GLY 527, 8oj7.cif #3/A ILE 528, 8oj7.cif
#3/A ILE 529, 8oj7.cif #3/A THR 530, 8oj7.cif #3/A ASP 531, 8oj7.cif #3/A LYS
532, 8oj7.cif #3/A ILE 533, 8oj7.cif #3/A LYS 534, 8oj7.cif #3/A LEU 535,
8oj7.cif #3/A SER 536, 8oj7.cif #3/A SER 537, 8oj7.cif #3/A TYR 538, 8oj7.cif
#3/A LYS 539, 8oj7.cif #3/A LEU 540, 8oj7.cif #3/A ASN 541, 8oj7.cif #3/A ALA
542, 8oj7.cif #3/A VAL 543, 8oj7.cif #3/A ALA 544, 8oj7.cif #3/A GLU 545,
8oj7.cif #3/A ALA 546, 8oj7.cif #3/A VAL 547, 8oj7.cif #3/A LEU 548, 8oj7.cif
#3/A LYS 549, 8oj7.cif #3/A ASP 550, 8oj7.cif #3/A LYS 551, 8oj7.cif #3/A LYS
552, 8oj7.cif #3/A LYS 553, 8oj7.cif #3/A ASP 554, 8oj7.cif #3/A LEU 555,
8oj7.cif #3/A SER 556, 8oj7.cif #3/A TYR 557, 8oj7.cif #3/A ARG 558, 8oj7.cif
#3/A ASP 559, 8oj7.cif #3/A ILE 560, 8oj7.cif #3/A PRO 561, 8oj7.cif #3/A ALA
562, 8oj7.cif #3/A TYR 563, 8oj7.cif #3/A TYR 564, 8oj7.cif #3/A ALA 565,
8oj7.cif #3/A ALA 566, 8oj7.cif #3/A GLY 567, 8oj7.cif #3/A PRO 568, 8oj7.cif
#3/A ALA 569, 8oj7.cif #3/A GLN 570, 8oj7.cif #3/A ARG 571, 8oj7.cif #3/A GLY
572, 8oj7.cif #3/A VAL 573, 8oj7.cif #3/A ILE 574, 8oj7.cif #3/A GLY 575,
8oj7.cif #3/A GLU 576, 8oj7.cif #3/A TYR 577, 8oj7.cif #3/A CYS 578, 8oj7.cif
#3/A ILE 579, 8oj7.cif #3/A GLN 580, 8oj7.cif #3/A ASP 581, 8oj7.cif #3/A SER
582, 8oj7.cif #3/A LEU 583, 8oj7.cif #3/A LEU 584, 8oj7.cif #3/A VAL 585,
8oj7.cif #3/A GLY 586, 8oj7.cif #3/A GLN 587, 8oj7.cif #3/A LEU 588, 8oj7.cif
#3/A PHE 589, 8oj7.cif #3/A PHE 590, 8oj7.cif #3/A LYS 591, 8oj7.cif #3/A PHE
592, 8oj7.cif #3/A LEU 593, 8oj7.cif #3/A PRO 594, 8oj7.cif #3/A HIS 595,
8oj7.cif #3/A LEU 596, 8oj7.cif #3/A GLU 597, 8oj7.cif #3/A LEU 598, 8oj7.cif
#3/A SER 599, 8oj7.cif #3/A ALA 600, 8oj7.cif #3/A VAL 601, 8oj7.cif #3/A ALA
602, 8oj7.cif #3/A ARG 603, 8oj7.cif #3/A LEU 604, 8oj7.cif #3/A ALA 605,
8oj7.cif #3/A GLY 606, 8oj7.cif #3/A ILE 607, 8oj7.cif #3/A ASN 608, 8oj7.cif
#3/A ILE 609, 8oj7.cif #3/A THR 610, 8oj7.cif #3/A ARG 611, 8oj7.cif #3/A THR
612, 8oj7.cif #3/A ILE 613, 8oj7.cif #3/A TYR 614, 8oj7.cif #3/A ASP 615,
8oj7.cif #3/A GLY 616, 8oj7.cif #3/A GLN 617, 8oj7.cif #3/A GLN 618, 8oj7.cif
#3/A ILE 619, 8oj7.cif #3/A ARG 620, 8oj7.cif #3/A VAL 621, 8oj7.cif #3/A PHE
622, 8oj7.cif #3/A THR 623, 8oj7.cif #3/A CYS 624, 8oj7.cif #3/A LEU 625,
8oj7.cif #3/A LEU 626, 8oj7.cif #3/A ARG 627, 8oj7.cif #3/A LEU 628, 8oj7.cif
#3/A ALA 629, 8oj7.cif #3/A ASP 630, 8oj7.cif #3/A GLN 631, 8oj7.cif #3/A LYS
632, 8oj7.cif #3/A GLY 633, 8oj7.cif #3/A PHE 634, 8oj7.cif #3/A ILE 635,
8oj7.cif #3/A LEU 636, 8oj7.cif #3/A PRO 637, 8oj7.cif #3/A ASP 638, 8oj7.cif
#3/A THR 639, 8oj7.cif #3/A GLN 640, 8oj7.cif #3/A GLY 641, 8oj7.cif #3/A ARG
642, 8oj7.cif #3/A PHE 643, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
8oj7.cif #3/A GLY 691, 8oj7.cif #3/A ARG 692, 8oj7.cif #3/A HIS 693, 8oj7.cif
#3/A VAL 694, 8oj7.cif #3/A GLY 695, 8oj7.cif #3/A TYR 696, 8oj7.cif #3/A GLN
697, 8oj7.cif #3/A GLY 698, 8oj7.cif #3/A ALA 699, 8oj7.cif #3/A ARG 700,
8oj7.cif #3/A VAL 701, 8oj7.cif #3/A LEU 702, 8oj7.cif #3/A ASP 703, 8oj7.cif
#3/A PRO 704, 8oj7.cif #3/A THR 705, 8oj7.cif #3/A SER 706, 8oj7.cif #3/A GLY
707, 8oj7.cif #3/A PHE 708, 8oj7.cif #3/A HIS 709, 8oj7.cif #3/A VAL 710,
8oj7.cif #3/A ASN 711, 8oj7.cif #3/A PRO 712, 8oj7.cif #3/A VAL 713, 8oj7.cif
#3/A VAL 714, 8oj7.cif #3/A VAL 715, 8oj7.cif #3/A PHE 716, 8oj7.cif #3/A ASP
717, 8oj7.cif #3/A PHE 718, 8oj7.cif #3/A ALA 719, 8oj7.cif #3/A SER 720,
8oj7.cif #3/A LEU 721, 8oj7.cif #3/A TYR 722, 8oj7.cif #3/A PRO 723, 8oj7.cif
#3/A SER 724, 8oj7.cif #3/A ILE 725, 8oj7.cif #3/A ILE 726, 8oj7.cif #3/A GLN
727, 8oj7.cif #3/A ALA 728, 8oj7.cif #3/A HIS 729, 8oj7.cif #3/A ASN 730,
8oj7.cif #3/A LEU 731, 8oj7.cif #3/A CYS 732, 8oj7.cif #3/A PHE 733, 8oj7.cif
#3/A SER 734, 8oj7.cif #3/A THR 735, 8oj7.cif #3/A LEU 736, 8oj7.cif #3/A SER
737, 8oj7.cif #3/A LEU 738, 8oj7.cif #3/A ARG 739, 8oj7.cif #3/A ALA 740,
8oj7.cif #3/A ASP 741, 8oj7.cif #3/A ALA 742, 8oj7.cif #3/A VAL 743, 8oj7.cif
#3/A ALA 744, 8oj7.cif #3/A HIS 745, 8oj7.cif #3/A LEU 746, 8oj7.cif #3/A GLU
747, 8oj7.cif #3/A ALA 748, 8oj7.cif #3/A GLY 749, 8oj7.cif #3/A LYS 750,
8oj7.cif #3/A ASP 751, 8oj7.cif #3/A TYR 752, 8oj7.cif #3/A LEU 753, 8oj7.cif
#3/A GLU 754, 8oj7.cif #3/A ILE 755, 8oj7.cif #3/A GLU 756, 8oj7.cif #3/A VAL
757, 8oj7.cif #3/A GLY 758, 8oj7.cif #3/A GLY 759, 8oj7.cif #3/A ARG 760,
8oj7.cif #3/A ARG 761, 8oj7.cif #3/A LEU 762, 8oj7.cif #3/A PHE 763, 8oj7.cif
#3/A PHE 764, 8oj7.cif #3/A VAL 765, 8oj7.cif #3/A LYS 766, 8oj7.cif #3/A ALA
767, 8oj7.cif #3/A HIS 768, 8oj7.cif #3/A VAL 769, 8oj7.cif #3/A ARG 770,
8oj7.cif #3/A GLU 771, 8oj7.cif #3/A SER 772, 8oj7.cif #3/A LEU 773, 8oj7.cif
#3/A LEU 774, 8oj7.cif #3/A SER 775, 8oj7.cif #3/A ILE 776, 8oj7.cif #3/A LEU
777, 8oj7.cif #3/A LEU 778, 8oj7.cif #3/A ARG 779, 8oj7.cif #3/A ASP 780,
8oj7.cif #3/A TRP 781, 8oj7.cif #3/A LEU 782, 8oj7.cif #3/A ALA 783, 8oj7.cif
#3/A MET 784, 8oj7.cif #3/A ARG 785, 8oj7.cif #3/A LYS 786, 8oj7.cif #3/A GLN
787, 8oj7.cif #3/A ILE 788, 8oj7.cif #3/A ARG 789, 8oj7.cif #3/A SER 790,
8oj7.cif #3/A ARG 791, 8oj7.cif #3/A ILE 792, 8oj7.cif #3/A PRO 793, 8oj7.cif
#3/A GLN 794, 8oj7.cif #3/A SER 795, 8oj7.cif #3/A SER 796, 8oj7.cif #3/A PRO
797, 8oj7.cif #3/A GLU 798, 8oj7.cif #3/A GLU 799, 8oj7.cif #3/A ALA 800,
8oj7.cif #3/A VAL 801, 8oj7.cif #3/A LEU 802, 8oj7.cif #3/A LEU 803, 8oj7.cif
#3/A ASP 804, 8oj7.cif #3/A LYS 805, 8oj7.cif #3/A GLN 806, 8oj7.cif #3/A GLN
807, 8oj7.cif #3/A ALA 808, 8oj7.cif #3/A ALA 809, 8oj7.cif #3/A ILE 810,
8oj7.cif #3/A LYS 811, 8oj7.cif #3/A VAL 812, 8oj7.cif #3/A VAL 813, 8oj7.cif
#3/A CYS 814, 8oj7.cif #3/A ASN 815, 8oj7.cif #3/A SER 816, 8oj7.cif #3/A VAL
817, 8oj7.cif #3/A TYR 818, 8oj7.cif #3/A GLY 819, 8oj7.cif #3/A PHE 820,
8oj7.cif #3/A THR 821, 8oj7.cif #3/A GLY 822, 8oj7.cif #3/A VAL 823, 8oj7.cif
#3/A GLN 824, 8oj7.cif #3/A HIS 825, 8oj7.cif #3/A GLY 826, 8oj7.cif #3/A LEU
827, 8oj7.cif #3/A LEU 828, 8oj7.cif #3/A PRO 829, 8oj7.cif #3/A CYS 830,
8oj7.cif #3/A LEU 831, 8oj7.cif #3/A HIS 832, 8oj7.cif #3/A VAL 833, 8oj7.cif
#3/A ALA 834, 8oj7.cif #3/A ALA 835, 8oj7.cif #3/A THR 836, 8oj7.cif #3/A VAL
837, 8oj7.cif #3/A THR 838, 8oj7.cif #3/A THR 839, 8oj7.cif #3/A ILE 840,
8oj7.cif #3/A GLY 841, 8oj7.cif #3/A ARG 842, 8oj7.cif #3/A GLU 843, 8oj7.cif
#3/A MET 844, 8oj7.cif #3/A LEU 845, 8oj7.cif #3/A LEU 846, 8oj7.cif #3/A ALA
847, 8oj7.cif #3/A THR 848, 8oj7.cif #3/A ARG 849, 8oj7.cif #3/A GLU 850,
8oj7.cif #3/A TYR 851, 8oj7.cif #3/A VAL 852, 8oj7.cif #3/A HIS 853, 8oj7.cif
#3/A ALA 854, 8oj7.cif #3/A ARG 855, 8oj7.cif #3/A TRP 856, 8oj7.cif #3/A ALA
857, 8oj7.cif #3/A ALA 858, 8oj7.cif #3/A PHE 859, 8oj7.cif #3/A GLU 860,
8oj7.cif #3/A GLN 861, 8oj7.cif #3/A LEU 862, 8oj7.cif #3/A LEU 863, 8oj7.cif
#3/A ALA 864, 8oj7.cif #3/A ASP 865, 8oj7.cif #3/A PHE 866, 8oj7.cif #3/A PRO
867, 8oj7.cif #3/A GLU 868, 8oj7.cif #3/A ALA 869, 8oj7.cif #3/A ALA 870,
8oj7.cif #3/A ASP 871, 8oj7.cif #3/A MET 872, 8oj7.cif #3/A ARG 873, 8oj7.cif
#3/A ALA 874, 8oj7.cif #3/A PRO 875, 8oj7.cif #3/A GLY 876, 8oj7.cif #3/A PRO
877, 8oj7.cif #3/A TYR 878, 8oj7.cif #3/A SER 879, 8oj7.cif #3/A MET 880,
8oj7.cif #3/A ARG 881, 8oj7.cif #3/A ILE 882, 8oj7.cif #3/A ILE 883, 8oj7.cif
#3/A TYR 884, 8oj7.cif #3/A GLY 885, 8oj7.cif #3/A ASP 886, 8oj7.cif #3/A THR
887, 8oj7.cif #3/A ASP 888, 8oj7.cif #3/A SER 889, 8oj7.cif #3/A ILE 890,
8oj7.cif #3/A PHE 891, 8oj7.cif #3/A VAL 892, 8oj7.cif #3/A LEU 893, 8oj7.cif
#3/A CYS 894, 8oj7.cif #3/A ARG 895, 8oj7.cif #3/A GLY 896, 8oj7.cif #3/A LEU
897, 8oj7.cif #3/A THR 898, 8oj7.cif #3/A ALA 899, 8oj7.cif #3/A ALA 900,
8oj7.cif #3/A GLY 901, 8oj7.cif #3/A LEU 902, 8oj7.cif #3/A THR 903, 8oj7.cif
#3/A ALA 904, 8oj7.cif #3/A VAL 905, 8oj7.cif #3/A GLY 906, 8oj7.cif #3/A ASP
907, 8oj7.cif #3/A LYS 908, 8oj7.cif #3/A MET 909, 8oj7.cif #3/A ALA 910,
8oj7.cif #3/A SER 911, 8oj7.cif #3/A HIS 912, 8oj7.cif #3/A ILE 913, 8oj7.cif
#3/A SER 914, 8oj7.cif #3/A ARG 915, 8oj7.cif #3/A ALA 916, 8oj7.cif #3/A LEU
917, 8oj7.cif #3/A PHE 918, 8oj7.cif #3/A LEU 919, 8oj7.cif #3/A PRO 920,
8oj7.cif #3/A PRO 921, 8oj7.cif #3/A ILE 922, 8oj7.cif #3/A LYS 923, 8oj7.cif
#3/A LEU 924, 8oj7.cif #3/A GLU 925, 8oj7.cif #3/A CYS 926, 8oj7.cif #3/A GLU
927, 8oj7.cif #3/A LYS 928, 8oj7.cif #3/A THR 929, 8oj7.cif #3/A PHE 930,
8oj7.cif #3/A THR 931, 8oj7.cif #3/A LYS 932, 8oj7.cif #3/A LEU 933, 8oj7.cif
#3/A LEU 934, 8oj7.cif #3/A LEU 935, 8oj7.cif #3/A ILE 936, 8oj7.cif #3/A ALA
937, 8oj7.cif #3/A LYS 938, 8oj7.cif #3/A LYS 939, 8oj7.cif #3/A LYS 940,
8oj7.cif #3/A TYR 941, 8oj7.cif #3/A ILE 942, 8oj7.cif #3/A GLY 943, 8oj7.cif
#3/A VAL 944, 8oj7.cif #3/A ILE 945, 8oj7.cif #3/A TYR 946, 8oj7.cif #3/A GLY
947, 8oj7.cif #3/A GLY 948, 8oj7.cif #3/A LYS 949, 8oj7.cif #3/A MET 950,
8oj7.cif #3/A LEU 951, 8oj7.cif #3/A ILE 952, 8oj7.cif #3/A LYS 953, 8oj7.cif
#3/A GLY 954, 8oj7.cif #3/A VAL 955, 8oj7.cif #3/A ASP 956, 8oj7.cif #3/A LEU
957, 8oj7.cif #3/A VAL 958, 8oj7.cif #3/A ARG 959, 8oj7.cif #3/A LYS 960,
8oj7.cif #3/A ASN 961, 8oj7.cif #3/A ASN 962, 8oj7.cif #3/A CYS 963, 8oj7.cif
#3/A ALA 964, 8oj7.cif #3/A PHE 965, 8oj7.cif #3/A ILE 966, 8oj7.cif #3/A ASN
967, 8oj7.cif #3/A ARG 968, 8oj7.cif #3/A THR 969, 8oj7.cif #3/A SER 970,
8oj7.cif #3/A ARG 971, 8oj7.cif #3/A ALA 972, 8oj7.cif #3/A LEU 973, 8oj7.cif
#3/A VAL 974, 8oj7.cif #3/A ASP 975, 8oj7.cif #3/A LEU 976, 8oj7.cif #3/A LEU
977, 8oj7.cif #3/A PHE 978, 8oj7.cif #3/A TYR 979, 8oj7.cif #3/A ASP 980,
8oj7.cif #3/A ASP 981, 8oj7.cif #3/A THR 982, 8oj7.cif #3/A VAL 983, 8oj7.cif
#3/A SER 984, 8oj7.cif #3/A GLY 985, 8oj7.cif #3/A ALA 986, 8oj7.cif #3/A ALA
987, 8oj7.cif #3/A ALA 988, 8oj7.cif #3/A ALA 989, 8oj7.cif #3/A LEU 990,
8oj7.cif #3/A ALA 991, 8oj7.cif #3/A GLU 992, 8oj7.cif #3/A ARG 993, 8oj7.cif
#3/A PRO 994, 8oj7.cif #3/A ALA 995, 8oj7.cif #3/A GLU 996, 8oj7.cif #3/A GLU
997, 8oj7.cif #3/A TRP 998, 8oj7.cif #3/A LEU 999, 8oj7.cif #3/A ALA 1000,
8oj7.cif #3/A ARG 1001, 8oj7.cif #3/A PRO 1002, 8oj7.cif #3/A LEU 1003,
8oj7.cif #3/A PRO 1004, 8oj7.cif #3/A GLU 1005, 8oj7.cif #3/A GLY 1006,
8oj7.cif #3/A LEU 1007, 8oj7.cif #3/A GLN 1008, 8oj7.cif #3/A ALA 1009,
8oj7.cif #3/A PHE 1010, 8oj7.cif #3/A GLY 1011, 8oj7.cif #3/A ALA 1012,
8oj7.cif #3/A VAL 1013, 8oj7.cif #3/A LEU 1014, 8oj7.cif #3/A VAL 1015,
8oj7.cif #3/A ASP 1016, 8oj7.cif #3/A ALA 1017, 8oj7.cif #3/A HIS 1018,
8oj7.cif #3/A ARG 1019, 8oj7.cif #3/A ARG 1020, 8oj7.cif #3/A ILE 1021,
8oj7.cif #3/A THR 1022, 8oj7.cif #3/A ASP 1023, 8oj7.cif #3/A PRO 1024,
8oj7.cif #3/A GLU 1025, 8oj7.cif #3/A ARG 1026, 8oj7.cif #3/A ASP 1027,
8oj7.cif #3/A ILE 1028, 8oj7.cif #3/A GLN 1029, 8oj7.cif #3/A ASP 1030,
8oj7.cif #3/A PHE 1031, 8oj7.cif #3/A VAL 1032, 8oj7.cif #3/A LEU 1033,
8oj7.cif #3/A THR 1034, 8oj7.cif #3/A ALA 1035, 8oj7.cif #3/A GLU 1036,
8oj7.cif #3/A LEU 1037, 8oj7.cif #3/A SER 1038, 8oj7.cif #3/A ARG 1039,
8oj7.cif #3/A HIS 1040, 8oj7.cif #3/A PRO 1041, 8oj7.cif #3/A ARG 1042,
8oj7.cif #3/A ALA 1043, 8oj7.cif #3/A TYR 1044, 8oj7.cif #3/A THR 1045,
8oj7.cif #3/A ASN 1046, 8oj7.cif #3/A LYS 1047, 8oj7.cif #3/A ARG 1048,
8oj7.cif #3/A LEU 1049, 8oj7.cif #3/A ALA 1050, 8oj7.cif #3/A HIS 1051,
8oj7.cif #3/A LEU 1052, 8oj7.cif #3/A THR 1053, 8oj7.cif #3/A VAL 1054,
8oj7.cif #3/A TYR 1055, 8oj7.cif #3/A TYR 1056, 8oj7.cif #3/A LYS 1057,
8oj7.cif #3/A LEU 1058, 8oj7.cif #3/A MET 1059, 8oj7.cif #3/A ALA 1060,
8oj7.cif #3/A ARG 1061, 8oj7.cif #3/A ARG 1062, 8oj7.cif #3/A ALA 1063,
8oj7.cif #3/A GLN 1064, 8oj7.cif #3/A VAL 1065, 8oj7.cif #3/A PRO 1066,
8oj7.cif #3/A SER 1067, 8oj7.cif #3/A ILE 1068, 8oj7.cif #3/A LYS 1069,
8oj7.cif #3/A ASP 1070, 8oj7.cif #3/A ARG 1071, 8oj7.cif #3/A ILE 1072,
8oj7.cif #3/A PRO 1073, 8oj7.cif #3/A TYR 1074, 8oj7.cif #3/A VAL 1075,
8oj7.cif #3/A ILE 1076, 8oj7.cif #3/A VAL 1077, 8oj7.cif #3/A ALA 1078,
8oj7.cif #3/A GLN 1079, 8oj7.cif #3/A THR 1080, 8oj7.cif #3/A ARG 1081,
8oj7.cif #3/A GLU 1082, 8oj7.cif #3/A VAL 1083, 8oj7.cif #3/A GLU 1084,
8oj7.cif #3/A GLU 1085, 8oj7.cif #3/A THR 1086, 8oj7.cif #3/A VAL 1087,
8oj7.cif #3/A ALA 1088, 8oj7.cif #3/A ARG 1089, 8oj7.cif #3/A LEU 1090,
8oj7.cif #3/A ALA 1091, 8oj7.cif #3/A ALA 1092, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, None, None, None,
None, None, None, None, None, None, None, None, None, None, 8oj7.cif #3/A PRO
1134, 8oj7.cif #3/A ARG 1135, 8oj7.cif #3/A LYS 1136, 8oj7.cif #3/A LEU 1137,
8oj7.cif #3/A LEU 1138, 8oj7.cif #3/A VAL 1139, 8oj7.cif #3/A SER 1140,
8oj7.cif #3/A GLU 1141, 8oj7.cif #3/A LEU 1142, 8oj7.cif #3/A ALA 1143,
8oj7.cif #3/A GLU 1144, 8oj7.cif #3/A ASP 1145, 8oj7.cif #3/A PRO 1146,
8oj7.cif #3/A ALA 1147, 8oj7.cif #3/A TYR 1148, 8oj7.cif #3/A ALA 1149,
8oj7.cif #3/A ILE 1150, 8oj7.cif #3/A ALA 1151, 8oj7.cif #3/A HIS 1152,
8oj7.cif #3/A GLY 1153, 8oj7.cif #3/A VAL 1154, 8oj7.cif #3/A ALA 1155,
8oj7.cif #3/A LEU 1156, 8oj7.cif #3/A ASN 1157, 8oj7.cif #3/A THR 1158,
8oj7.cif #3/A ASP 1159, 8oj7.cif #3/A TYR 1160, 8oj7.cif #3/A TYR 1161,
8oj7.cif #3/A PHE 1162, 8oj7.cif #3/A SER 1163, 8oj7.cif #3/A HIS 1164,
8oj7.cif #3/A LEU 1165, 8oj7.cif #3/A LEU 1166, 8oj7.cif #3/A GLY 1167,
8oj7.cif #3/A ALA 1168, 8oj7.cif #3/A ALA 1169, 8oj7.cif #3/A CYS 1170,
8oj7.cif #3/A VAL 1171, 8oj7.cif #3/A THR 1172, 8oj7.cif #3/A PHE 1173,
8oj7.cif #3/A LYS 1174, 8oj7.cif #3/A ALA 1175, 8oj7.cif #3/A LEU 1176,
8oj7.cif #3/A PHE 1177, 8oj7.cif #3/A GLY 1178, 8oj7.cif #3/A ASN 1179,
8oj7.cif #3/A ASN 1180, 8oj7.cif #3/A ALA 1181, 8oj7.cif #3/A LYS 1182,
8oj7.cif #3/A ILE 1183, 8oj7.cif #3/A THR 1184, 8oj7.cif #3/A GLU 1185,
8oj7.cif #3/A SER 1186, 8oj7.cif #3/A LEU 1187, 8oj7.cif #3/A LEU 1188,
8oj7.cif #3/A LYS 1189, 8oj7.cif #3/A ARG 1190, 8oj7.cif #3/A PHE 1191,
8oj7.cif #3/A ILE 1192, 8oj7.cif #3/A PRO 1193, 8oj7.cif #3/A GLU 1194,
8oj7.cif #3/A VAL 1195, 8oj7.cif #3/A TRP 1196, 8oj7.cif #3/A HIS 1197,
8oj7.cif #3/A PRO 1198, 8oj7.cif #3/A PRO 1199, 8oj7.cif #3/A ASP 1200,
8oj7.cif #3/A ASP 1201, 8oj7.cif #3/A VAL 1202, 8oj7.cif #3/A ALA 1203,
8oj7.cif #3/A ALA 1204, 8oj7.cif #3/A ARG 1205, 8oj7.cif #3/A LEU 1206,
8oj7.cif #3/A ARG 1207, 8oj7.cif #3/A THR 1208, 8oj7.cif #3/A ALA 1209,
8oj7.cif #3/A GLY 1210, 8oj7.cif #3/A PHE 1211, 8oj7.cif #3/A GLY 1212,
8oj7.cif #3/A ALA 1213, 8oj7.cif #3/A VAL 1214, 8oj7.cif #3/A GLY 1215,
8oj7.cif #3/A ALA 1216, 8oj7.cif #3/A GLY 1217, 8oj7.cif #3/A ALA 1218,
8oj7.cif #3/A THR 1219, 8oj7.cif #3/A ALA 1220, 8oj7.cif #3/A GLU 1221,
8oj7.cif #3/A GLU 1222, 8oj7.cif #3/A THR 1223, 8oj7.cif #3/A ARG 1224,
8oj7.cif #3/A ARG 1225, 8oj7.cif #3/A MET 1226, 8oj7.cif #3/A LEU 1227,
8oj7.cif #3/A HIS 1228, 8oj7.cif #3/A ARG 1229, 8oj7.cif #3/A ALA 1230,
8oj7.cif #3/A PHE 1231, 8oj7.cif #3/A ASP 1232, 8oj7.cif #3/A THR 1233,
8oj7.cif #3/A LEU 1234, 8oj7.cif #3/A ALA 1235
Residue usage in match (1=used, 0=unused):
0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1,
1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0,
0, 0, 0, 0
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0,
1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0,
0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1,
0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
> hide #!3 models
> select #1/A:233
12 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select clear
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> select clear
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> select clear
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> hide #!1 models
> show #!3 models
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel restrict cross interModel false twoColors true intraRes false
> select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
11 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A LEU 721 N 8oj7.cif #3/A DTP 1303 O1B no hydrogen 3.253 N/A
8oj7.cif #3/A TYR 722 N 8oj7.cif #3/A DTP 1303 O3' no hydrogen 2.965 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.294 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O3G no hydrogen 3.297 N/A
8oj7.cif #3/A ARG 785 NH2 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.088 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O2A no hydrogen 3.141 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3A no hydrogen 3.047 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3G no hydrogen 2.739 N/A
8oj7.cif #3/A DTP 1303 N6 8oj7.cif #3/D DT 14 O4 no hydrogen 3.167 N/A
8oj7.cif #3/A DTP 1303 O3' 8oj7.cif #3/A ASN 815 OD1 no hydrogen 3.556 N/A
8oj7.cif #3/D DT 14 N3 8oj7.cif #3/A DTP 1303 N1 no hydrogen 3.025 N/A
11 hydrogen bonds found
4 strict hydrogen bonds found
> show #!1 models
> hide #!1 models
> size pseudobondRadius 0.15
Changed 37 pseudobond radii
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> view sel
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> nucleotides (#!3 & sel) atoms
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> nucleotides #3 atoms
> select /A
16038 atoms, 16318 bonds, 18 pseudobonds, 1564 residues, 5 models selected
> color (#!3 & sel) cornflower blue
> color (#!3 & sel) byhetero
> color (#!3 & sel) dim gray
> color (#!3 & sel) byhetero
> color (#!3 & sel) dark gray
> color (#!3 & sel) byhetero
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> color (#!3 & sel) magenta
> color (#!3 & sel) byhetero
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> color (#!3 & sel) cyan
> color (#!3 & sel) magenta
> color (#!3 & sel) byhetero
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> color (#!3 & sel) cyan
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> color (#!3 & sel) magenta
> color (#!3 & sel) byhetero
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> select #3/C:49
21 atoms, 23 bonds, 1 residue, 1 model selected
> select #3/C:50
22 atoms, 24 bonds, 1 residue, 1 model selected
> select #3/C:49
21 atoms, 23 bonds, 1 residue, 1 model selected
> select add #3/C:50
43 atoms, 47 bonds, 2 residues, 1 model selected
> select add #3/C:51
64 atoms, 70 bonds, 3 residues, 1 model selected
> select add #3/C:52
85 atoms, 93 bonds, 4 residues, 1 model selected
> select add #3/C:53
103 atoms, 112 bonds, 5 residues, 1 model selected
> color sel cyan
> color sel byhetero
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> view sel
> ~label sel residues
> ~label sel atoms
> view sel
> hide #!3 models
> show #!1 models
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> view sel
> ui tool show "Side View"
> select /D
1108 atoms, 1222 bonds, 48 residues, 2 models selected
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select #1/A:136
22 atoms, 21 bonds, 1 residue, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> color #3.2 #9070cdff models
> hide #!1 models
> select add #1
8064 atoms, 8185 bonds, 16 pseudobonds, 492 residues, 4 models selected
> select subtract #1
1 model selected
Cell requested for row 1 is out of bounds for table with 8 rows! Resizing
table model.
> ui tool show H-Bonds
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> hbonds sel restrict cross interModel false twoColors true intraRes false
> select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
11 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A LEU 721 N 8oj7.cif #3/A DTP 1303 O1B no hydrogen 3.253 N/A
8oj7.cif #3/A TYR 722 N 8oj7.cif #3/A DTP 1303 O3' no hydrogen 2.965 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.294 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O3G no hydrogen 3.297 N/A
8oj7.cif #3/A ARG 785 NH2 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.088 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O2A no hydrogen 3.141 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3A no hydrogen 3.047 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3G no hydrogen 2.739 N/A
8oj7.cif #3/A DTP 1303 N6 8oj7.cif #3/D DT 14 O4 no hydrogen 3.167 N/A
8oj7.cif #3/A DTP 1303 O3' 8oj7.cif #3/A ASN 815 OD1 no hydrogen 3.556 N/A
8oj7.cif #3/D DT 14 N3 8oj7.cif #3/A DTP 1303 N1 no hydrogen 3.025 N/A
11 hydrogen bonds found
4 strict hydrogen bonds found
> size pseudobondRadius 0.15
Changed 37 pseudobond radii
> ~label sel residues
> ~label sel atoms
> ~label sel residues
Drag select of 19 residues, 1 pseudobonds
> select clear
Drag select of 22 residues, 1 pseudobonds
> select clear
Drag select of 15 residues, 1 pseudobonds
> hide sel cartoons
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : select sel : view sel
> select sel : select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : view sel
> select clear
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : select sel : view sel
> select clear
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : select sel : select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : view sel
> select clear
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> color sel cornflower blue
> color sel byhetero
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select ::name="C_15"
40 atoms, 42 bonds, 1 residue, 1 model selected
> hbonds sel restrict cross interModel false twoColors true intraRes false
> select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 EBV_Uma15.pdb
10 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
EBV_Uma15.pdb #1/A SER 65 N EBV_Uma15.pdb #1/B C_15 1 O2G EBV_Uma15.pdb #1/A SER 65 H 2.948 2.164
EBV_Uma15.pdb #1/A SER 65 OG EBV_Uma15.pdb #1/B C_15 1 O2G EBV_Uma15.pdb #1/A SER 65 HG 3.371 2.525
EBV_Uma15.pdb #1/A LEU 66 N EBV_Uma15.pdb #1/B C_15 1 O1B EBV_Uma15.pdb #1/A LEU 66 H 3.049 2.038
EBV_Uma15.pdb #1/A ARG 132 NH1 EBV_Uma15.pdb #1/B C_15 1 O2G EBV_Uma15.pdb #1/A ARG 132 HH12 2.652 1.588
EBV_Uma15.pdb #1/A ARG 132 NH2 EBV_Uma15.pdb #1/B C_15 1 O1G EBV_Uma15.pdb #1/A ARG 132 HH22 2.739 1.690
EBV_Uma15.pdb #1/A LYS 159 NZ EBV_Uma15.pdb #1/B C_15 1 O1G EBV_Uma15.pdb #1/A LYS 159 HZ3 2.667 1.640
EBV_Uma15.pdb #1/A LYS 159 NZ EBV_Uma15.pdb #1/B C_15 1 O2A EBV_Uma15.pdb #1/A LYS 159 HZ2 2.741 1.765
EBV_Uma15.pdb #1/A ASN 163 ND2 EBV_Uma15.pdb #1/B C_15 1 O2B EBV_Uma15.pdb #1/A ASN 163 HD22 2.589 1.539
EBV_Uma15.pdb #1/B C_15 1 N2 EBV_Uma15.pdb #1/D DT 2 O1 EBV_Uma15.pdb #1/B C_15 1 H2_1 3.040 2.053
EBV_Uma15.pdb #1/D DT 2 N3 EBV_Uma15.pdb #1/B C_15 1 N1 EBV_Uma15.pdb #1/D DT 2 HN3 2.769 1.758
10 hydrogen bonds found
7 strict hydrogen bonds found
> size pseudobondRadius 0.15
Changed 37 pseudobond radii
> select clear
> hide #!1 models
> show #!3 models
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> hbonds sel restrict cross interModel false twoColors true intraRes false
> select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
11 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A LEU 721 N 8oj7.cif #3/A DTP 1303 O1B no hydrogen 3.253 N/A
8oj7.cif #3/A TYR 722 N 8oj7.cif #3/A DTP 1303 O3' no hydrogen 2.965 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.294 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O3G no hydrogen 3.297 N/A
8oj7.cif #3/A ARG 785 NH2 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.088 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O2A no hydrogen 3.141 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3A no hydrogen 3.047 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3G no hydrogen 2.739 N/A
8oj7.cif #3/A DTP 1303 N6 8oj7.cif #3/D DT 14 O4 no hydrogen 3.167 N/A
8oj7.cif #3/A DTP 1303 O3' 8oj7.cif #3/A ASN 815 OD1 no hydrogen 3.556 N/A
8oj7.cif #3/D DT 14 N3 8oj7.cif #3/A DTP 1303 N1 no hydrogen 3.025 N/A
11 hydrogen bonds found
4 strict hydrogen bonds found
> size pseudobondRadius 0.15
Changed 37 pseudobond radii
> hide #!3 models
> show #!1 models
> hide #3.1 models
> show #!3 models
> select clear
> show #3.1 models
> hide #3.1 models
> show #3.1 models
> hide #3.1 models
> show #3.1 models
> hide #3.1 models
> help help:user/tools/hbonds.html
> hide #!3.3 models
> show #!3.3 models
> hide #!3 models
> hide #!1 models
> show #!3 models
> show #3.1 models
> hide #!3 models
> show #!1 models
> hide #3.1 models
> hide #3.2 models
> hide #!3.3 models
> show #!3.3 models
> hide #!3.3 models
> hide #!3 models
> select #1/A:67
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/A:66
19 atoms, 18 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select #1/E:8
34 atoms, 35 bonds, 1 residue, 1 model selected
> select add #1/D:1
67 atoms, 69 bonds, 2 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> show #3.1 models
> hide #!1 models
> show #3.2 models
> hide #3.1 models
> show #3.1 models
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> hbonds sel color #fffb00 radius 0.15 restrict cross interModel false
> intraRes false select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
11 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A LEU 721 N 8oj7.cif #3/A DTP 1303 O1B no hydrogen 3.253 N/A
8oj7.cif #3/A TYR 722 N 8oj7.cif #3/A DTP 1303 O3' no hydrogen 2.965 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.294 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O3G no hydrogen 3.297 N/A
8oj7.cif #3/A ARG 785 NH2 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.088 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O2A no hydrogen 3.141 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3A no hydrogen 3.047 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3G no hydrogen 2.739 N/A
8oj7.cif #3/A DTP 1303 N6 8oj7.cif #3/D DT 14 O4 no hydrogen 3.167 N/A
8oj7.cif #3/A DTP 1303 O3' 8oj7.cif #3/A ASN 815 OD1 no hydrogen 3.556 N/A
8oj7.cif #3/D DT 14 N3 8oj7.cif #3/A DTP 1303 N1 no hydrogen 3.025 N/A
11 hydrogen bonds found
> hbonds sel color #fffb00 radius 0.15 dashes 8 restrict cross interModel
> false intraRes false select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
1 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A GLN 807 OE1 no hydrogen 2.761 N/A
1 hydrogen bonds found
> undo
> hide sel & #!3 atoms
> select #3/A:807
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #3/A:785
20 atoms, 18 bonds, 2 residues, 1 model selected
> hide sel atoms
> select ::name="DTP"
30 atoms, 32 bonds, 1 residue, 1 model selected
> hbonds sel color #fffb00 radius 0.15 dashes 8 restrict cross interModel
> false select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
3 8oj7.cif
11 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
8oj7.cif #3/A LEU 721 N 8oj7.cif #3/A DTP 1303 O1B no hydrogen 3.253 N/A
8oj7.cif #3/A TYR 722 N 8oj7.cif #3/A DTP 1303 O3' no hydrogen 2.965 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.294 N/A
8oj7.cif #3/A ARG 785 NH1 8oj7.cif #3/A DTP 1303 O3G no hydrogen 3.297 N/A
8oj7.cif #3/A ARG 785 NH2 8oj7.cif #3/A DTP 1303 O2G no hydrogen 3.088 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O2A no hydrogen 3.141 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3A no hydrogen 3.047 N/A
8oj7.cif #3/A LYS 811 NZ 8oj7.cif #3/A DTP 1303 O3G no hydrogen 2.739 N/A
8oj7.cif #3/A DTP 1303 N6 8oj7.cif #3/D DT 14 O4 no hydrogen 3.167 N/A
8oj7.cif #3/A DTP 1303 O3' 8oj7.cif #3/A ASN 815 OD1 no hydrogen 3.556 N/A
8oj7.cif #3/D DT 14 N3 8oj7.cif #3/A DTP 1303 N1 no hydrogen 3.025 N/A
11 hydrogen bonds found
> select clear
> show #3.2 models
> select #3/C:53
18 atoms, 19 bonds, 1 residue, 1 model selected
> hide sel cartoons
> show sel atoms
> select #3/C:52
21 atoms, 23 bonds, 1 residue, 1 model selected
> hide sel cartoons
> show sel cartoons
> select #3/C:53@C4'
1 atom, 1 residue, 1 model selected
> select #3/C:53@C4'
1 atom, 1 residue, 1 model selected
Drag select of 8 atoms, 4 residues, 9 bonds
> select clear
> select /E
268 atoms, 289 bonds, 8 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #3/C
Alignment identifier is 3/C
> select #3/C:53
18 atoms, 19 bonds, 1 residue, 1 model selected
> select #3/C:49-53
103 atoms, 116 bonds, 5 residues, 1 model selected
> select #3/C:53
18 atoms, 19 bonds, 1 residue, 1 model selected
> show sel cartoons
> select clear
> size pseudobondRadius 0.1
Changed 37 pseudobond radii
> show #!1 models
> hide #!1 models
> save /Users/rslack/Documents/Data/EBV_POL_Model/HSV_dATP_Hbonds.tif width
> 720 height 666 supersample 4
> hide #!3 models
> show #!1 models
> color #1.2 #fffb00ff models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> save /Users/rslack/Documents/Data/EBV_POL_Model/UMA_Figure.cxs
> select H
3973 atoms, 491 residues, 1 model selected
> delete atoms (#!1 & sel)
> delete bonds (#!1 & sel)
> select ::name="C_15"
30 atoms, 32 bonds, 1 residue, 1 model selected
> hbonds sel color #fffb00 radius 0.15 dashes 8 restrict cross interModel
> false select true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 EBV_Uma15.pdb
12 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
EBV_Uma15.pdb #1/A SER 65 N EBV_Uma15.pdb #1/B C_15 1 O2G no hydrogen 2.948 N/A
EBV_Uma15.pdb #1/A SER 65 OG EBV_Uma15.pdb #1/B C_15 1 O2G no hydrogen 3.371 N/A
EBV_Uma15.pdb #1/A LEU 66 N EBV_Uma15.pdb #1/B C_15 1 O1B no hydrogen 3.049 N/A
EBV_Uma15.pdb #1/A ARG 132 NH1 EBV_Uma15.pdb #1/B C_15 1 O2G no hydrogen 2.652 N/A
EBV_Uma15.pdb #1/A ARG 132 NH2 EBV_Uma15.pdb #1/B C_15 1 O1G no hydrogen 2.739 N/A
EBV_Uma15.pdb #1/A ARG 132 NH2 EBV_Uma15.pdb #1/B C_15 1 O2G no hydrogen 3.530 N/A
EBV_Uma15.pdb #1/A LYS 159 NZ EBV_Uma15.pdb #1/B C_15 1 O1G no hydrogen 2.667 N/A
EBV_Uma15.pdb #1/A LYS 159 NZ EBV_Uma15.pdb #1/B C_15 1 O2A no hydrogen 2.741 N/A
EBV_Uma15.pdb #1/A LYS 159 NZ EBV_Uma15.pdb #1/B C_15 1 O3A no hydrogen 3.229 N/A
EBV_Uma15.pdb #1/A ASN 163 ND2 EBV_Uma15.pdb #1/B C_15 1 O2B no hydrogen 2.589 N/A
EBV_Uma15.pdb #1/B C_15 1 N2 EBV_Uma15.pdb #1/D DT 2 O1 no hydrogen 3.040 N/A
EBV_Uma15.pdb #1/D DT 2 N3 EBV_Uma15.pdb #1/B C_15 1 N1 no hydrogen 2.769 N/A
12 hydrogen bonds found
> select clear
> size pseudobondRadius 0.1
Changed 39 pseudobond radii
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds.tif
> width 720 height 666 supersample 4
> hide #1.2 models
> show #1.2 models
> hide #!1 models
> show #!3 models
> save /Users/rslack/Documents/Data/EBV_POL_Model/HSV_dATP_Hbonds.tif width
> 720 height 666 supersample 4
> save /Users/rslack/Documents/Data/EBV_POL_Model/HSV_dATP_Hbonds.tif width
> 766 height 666 supersample 4
> hide #!3 models
> show #!1 models
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds.tif
> width 766 height 666 supersample 4
> hide #!1 models
> show #!3 models
> save /Users/rslack/Documents/Data/EBV_POL_Model/HSV_dATP_Hbonds2.tif width
> 1532 height 1332 supersample 4
> hide #!3 models
> show #!1 models
> save
> /Users/rslack/Documents/Data/EBV_POL_Model/EBV_Uma15_3D_withPseudobonds2.tif
> width 1532 height 1332 supersample 4
> select ::name="C_15"
30 atoms, 32 bonds, 1 residue, 1 model selected
> select sel : style sel & #!1 stick
Changed 224 atom styles
> show sel & #!1 atoms
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: MKGQ3LL/A
Chip: Apple M1 Pro
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 10151.140.19
OS Loader Version: 10151.140.19
Software:
System Software Overview:
System Version: macOS 14.6.1 (23G93)
Kernel Version: Darwin 23.6.0
Time since boot: 7 days, 7 hours, 35 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 4 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Reporter: | changed from to |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 4 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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The ChimeraX bug report panel that you used to submit this bug explained what we know about it:
"This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX."
The ChimeraX 1.10 prerelease or daily build uses a newer Qt that does not have these Mac multi-display bugs.