'ArrayGridData' object has no attribute 'dicom_data'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Opening segmentation tab


Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/kevinhuynh/Downloads/cryosparc_P27_J819_003_volume_map.mrc

Opened cryosparc_P27_J819_003_volume_map.mrc as #1, grid size 512,512,512,
pixel 1.16, shown at level 0.00412, step 2, values float32  

> open /Users/kevinhuynh/Downloads/cryosparc_P27_J818_004_volume_map.mrc

Opened cryosparc_P27_J818_004_volume_map.mrc as #2, grid size 512,512,512,
pixel 1.16, shown at level 0.00459, step 2, values float32  

> open /Users/kevinhuynh/Downloads/cryosparc_P27_J781_004_volume_map.mrc

Opened cryosparc_P27_J781_004_volume_map.mrc as #3, grid size 512,512,512,
pixel 1.16, shown at level 0.00469, step 2, values float32  

> volume #2 step 1

> volume #3 step 1

> volume #1 step 1

> volume #1 level 0.2

> volume #2 level 0.2

> volume #3 level 0.22

> volume #2 level 0.22

> volume #1 level 0.22

> lighting soft

> volume #2 color #ff8072

> volume #3 color #58fe99

> volume #3 color #58fe9993

> volume #3 color #58fe9994

> volume #2 level 0.2

> open /Users/kevinhuynh/Downloads/cryosparc_P27_J830_010_volume_map.mrc

Opened cryosparc_P27_J830_010_volume_map.mrc as #4, grid size 512,512,512,
pixel 1.16, shown at level 0.0105, step 2, values float32  

> volume #4 step 1

> volume #4 level 0.22

> volume #3 level 0.2

> open
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/mGluR4Gi.map

Opened mGluR4Gi.map as #5, grid size 360,360,360, pixel 1.04, shown at level
2.26, step 2, values float32  

> volume #5 step 1

> volume #5 level 8.344

> volume #5 level 5.811

> volume #1 level 0.2

> open
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/LR_PS_maps/bothLBDCRDresampled.mrc

Opened bothLBDCRDresampled.mrc as #6, grid size 512,512,512, pixel 1.16, shown
at level 1.92e-05, step 2, values float32  

> volume #6 level 0.2154

> close #6

> open /Users/kevinhuynh/Downloads/cryosparc_P27_J828_009_volume_map.mrc

Opened cryosparc_P27_J828_009_volume_map.mrc as #6, grid size 512,512,512,
pixel 1.16, shown at level 0.0142, step 2, values float32  

> volume #6 step 1

> volume #6 level 0.1647

> close #5

> volume #6 level 0.2878

> volume #6 level 0.22

> volume #6 level 0.24

> volume #4 level 0.24

> volume #6 level 0.2635

> open
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/Maskson3DVA/Comp2_frame0_9_bothLBDs.mrc

Opened Comp2_frame0_9_bothLBDs.mrc as #5, grid size 512,512,512, pixel 1.16,
shown at level 1.7e-05, step 2, values float32  

> volume #5 level 0.1797

> volume #5 step 1

> volume #5 level 0.1759

> volume #5 level 0.2

> ui tool show "Fit in Map"

> fitmap #5 inMap #1

Fit map Comp2_frame0_9_bothLBDs.mrc in map
cryosparc_P27_J819_003_volume_map.mrc using 47382 points  
correlation = 0.9965, correlation about mean = 0.7987, overlap = 2797  
steps = 60, shift = 1.82, angle = 5.3 degrees  
  
Position of Comp2_frame0_9_bothLBDs.mrc (#5) relative to
cryosparc_P27_J819_003_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99573975 0.04759967 0.07897228 -40.31754004  
-0.04715970 0.99885974 -0.00742801 16.72022726  
-0.07923580 0.00367206 0.99684914 23.62988384  
Axis 0.06008174 0.85633874 -0.51290755  
Axis point 275.88505276 0.00000000 525.24016089  
Rotation angle (degrees) 5.30023726  
Shift along axis -0.22411528  
  

> volume #5 level 0.1816

> volume #2 color #ff807280

> volume #5 level 0.1307

> volume #5 level 0.06091

> save
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/Maskson3DVA/Comp2_frame10_19_bothLBDs.mrc
> models #5

> open
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/Maskson3DVA/Comp2_frame0_9_Gproteinonly.mrc

Opened Comp2_frame0_9_Gproteinonly.mrc as #7, grid size 512,512,512, pixel
1.16, shown at level 1.77e-05, step 2, values float32  

> volume #1 level 0.1393

> volume #1 level 0.14

> volume #7 color #99bfe535

> volume #7 color #99bfe536

> volume #7 step 1

> volume #7 level 0.1129

> fitmap #7 inMap #1

Fit map Comp2_frame0_9_Gproteinonly.mrc in map
cryosparc_P27_J819_003_volume_map.mrc using 75191 points  
correlation = 0.9916, correlation about mean = 0.8761, overlap = 2988  
steps = 40, shift = 1.07, angle = 3.43 degrees  
  
Position of Comp2_frame0_9_Gproteinonly.mrc (#7) relative to
cryosparc_P27_J819_003_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99832233 -0.01697553 -0.05535669 17.87305603  
0.01612331 0.99974508 -0.01580547 -1.20391130  
0.05561088 0.01488642 0.99834154 -19.59500213  
Axis 0.25619908 -0.92629655 0.27629102  
Axis point 363.01388210 0.00000000 310.57169544  
Rotation angle (degrees) 3.43398751  
Shift along axis 0.28031615  
  

> select add #7

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.9907,0.034775,-0.13155,19.684,-0.04971,0.99246,-0.11201,38.596,0.12666,0.1175,0.98496,-67.589

> ui mousemode right "translate selected models"

> view matrix models
> #7,0.9907,0.034775,-0.13155,19.528,-0.04971,0.99246,-0.11201,38.812,0.12666,0.1175,0.98496,-68.937

> close #7

> close #5

> volume #2 level 0.14

> volume #1 level 0.15

> volume gaussian #1 sDev 2

Opened cryosparc_P27_J819_003_volume_map.mrc gaussian as #5, grid size
512,512,512, pixel 1.16, shown at step 1, values float32  

> volume #5 level 0.1505

> ui tool show "Segment Map"

Segmenting cryosparc_P27_J819_003_volume_map.mrc gaussian, density threshold
0.150460  
Showing 33 region surfaces  
153 watershed regions, grouped to 33 regions  
Showing cryosparc_P27_J819_003_volume_map gaussian.seg - 33 regions, 33
surfaces  
Drag select of 229, 220, 231, 219, 208, 230, 188, 7674 of 11192 triangles,
187, 5832 of 9700 triangles, 116, 5 cryosparc_P27_J819_003_volume_map.mrc
gaussian  
Deleted 9 regions  

> select clear

Segmenting cryosparc_P27_J819_003_volume_map.mrc gaussian, density threshold
0.150460  
Showing 21 region surfaces  
153 watershed regions, grouped to 21 regions  
Showing cryosparc_P27_J819_003_volume_map gaussian.seg - 21 regions, 21
surfaces  
Segmenting cryosparc_P27_J819_003_volume_map.mrc gaussian, density threshold
0.150460  
Showing 50 region surfaces  
153 watershed regions, grouped to 50 regions  
Showing cryosparc_P27_J819_003_volume_map gaussian.seg - 50 regions, 50
surfaces  

> volume #5 level 0.153

> volume #5 level 0.1388

> volume #5 level 0.1312

> volume #5 level 0.13

Segmenting cryosparc_P27_J819_003_volume_map.mrc gaussian, density threshold
0.130000  
Showing 50 region surfaces  
154 watershed regions, grouped to 50 regions  
Showing cryosparc_P27_J819_003_volume_map gaussian.seg - 50 regions, 50
surfaces  

> select add #7.1

1 model selected  

> select subtract #7.1

Nothing selected  

> select add #7.1

1 model selected  

> select add #7.24

2 models selected  

> select add #7.28

3 models selected  

> select add #7.39

4 models selected  

> select add #7.46

5 models selected  

> select add #7.50

6 models selected  
Saving 6 regions to mrc file...  
Opened Comp2_frame10_19_Gproteinonly.mrc as #8, grid size 70,61,70, pixel
1.16, shown at step 1, values float32  
Wrote Comp2_frame10_19_Gproteinonly.mrc  

> close #7

> volume #8 level 0.1577

> open
> /Users/kevinhuynh/Documents/Research/Levitz_Lab/mGluR_G_Protein_Project/Maskson3DVA/Comp2_frame0_9_Gproteinonly.mrc

Opened Comp2_frame0_9_Gproteinonly.mrc as #7, grid size 512,512,512, pixel
1.16, shown at level 1.77e-05, step 2, values float32  

> volume #8 level 0.04761

> volume #7 step 1

> volume #7 level 0.1229

> ui tool show Segmentations

> ui view fourup

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1580, in
_surfaceChosen  
self._update_position_label_text()  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
AttributeError: 'ArrayGridData' object has no attribute 'dicom_data'  
  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 764, in
_update_position_label_text  
dicom_data = self.view.drawing.parent.data.dicom_data  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: Z15G0022JLL/A
      Chip: Apple M1 Pro
      Total Number of Cores: 8 (6 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 11881.121.1
      OS Loader Version: 11881.121.1

Software:

    System Software Overview:

      System Version: macOS 15.5 (24F74)
      Kernel Version: Darwin 24.5.0
      Time since boot: 2 hours, 13 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        DELL U2724D:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 120.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
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    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
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    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
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    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13