Opened 4 months ago

Closed 4 months ago

#17996 closed defect (nonchimerax)

Disk quota exceeded

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-4.18.0-553.50.1.el8_10.x86_64-x86_64-with-glibc2.28
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Errors  
---  
errors | "/home/x_ayaal/.cache/ChimeraX/1.6/toolshed/bundle_info.cache":
[Errno 122] Disk quota exceeded:
'/home/x_ayaal/.cache/ChimeraX/1.6/toolshed/bundle_info.cache'  
Cannot write '/home/x_ayaal/.local/share/ChimeraX/preregistration': [Errno
122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/preregistration'  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 560, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/__init__.py", line 1269, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/model_panel/__init__.py", line 21, in start_tool  
return model_panel(session, tool_name)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/model_panel/tool.py", line 418, in model_panel  
_mp = ModelPanel(session, tool_name)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/model_panel/tool.py", line 31, in __init__  
now = self.settings.last_use = time()  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/settings.py", line 188, in __setattr__  
ConfigFile.__setattr__(self, name, value)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/configfile.py", line 375, in __setattr__  
ConfigFile.save(self)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/configfile.py", line 324, in save  
with SaveTextFile(self._filename) as f:  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.config/ChimeraX/ModelPanel-1.1301130.tmp'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/tools.py", line 394, in start_tools  
bi.start_tool(session, tool_name)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Model Panel
in bundle ChimeraX-ModelPanel:  
[Errno 122] Disk quota exceeded:
'/home/x_ayaal/.config/ChimeraX/ModelPanel-1.1301130.tmp'  
  
Tool "Model Panel" failed to start:  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Model Panel
in bundle ChimeraX-ModelPanel:  
[Errno 122] Disk quota exceeded:
'/home/x_ayaal/.config/ChimeraX/ModelPanel-1.1301130.tmp'  
  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 567, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /proj/berzelius-2023-199/users/AA_CCPEM/J266_ZnT3_model-
> coot-65_13_rsr46_Ligand_250616_nozincs.pdb

Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 351, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 456, in add  
self._history.enqueue((item, typed))  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Chain information for J266_ZnT3_model-
coot-65_13_rsr46_Ligand_250616_nozincs.pdb #1  
---  
Chain | Description  
B | No description available  
  

> open /proj/berzelius-2023-199/users/AA_CCPEM/P9_J266_sharp_map.mrc

Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 351, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 456, in add  
self._history.enqueue((item, typed))  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Opened P9_J266_sharp_map.mrc as #2, grid size 384,384,384, pixel 0.65, shown
at level 0.0247, step 2, values float32  

> volume #2 level 0.0706

Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 351, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 456, in add  
self._history.enqueue((item, typed))  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> volume #2 level 0.09781

Traceback (most recent call last):  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 351, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 456, in add  
self._history.enqueue((item, typed))  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 122] Disk quota exceeded:
'/home/x_ayaal/.local/share/ChimeraX/commands.1301130.tmp'  
  
File
"/software/presto/e/12.0/software/ChimeraX/1.6.1-foss-2021a/chimerax/lib/python3.9/site-
packages/chimerax/core/safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 535.247.01
OpenGL renderer: Quadro RTX 6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=xfce
XDG_SESSION_DESKTOP=xfce
XDG_CURRENT_DESKTOP=XFCE
DISPLAY=:6.0
Manufacturer: GIGABYTE
Model: MZ92-FS0-00
OS: Rocky Linux 8.10 Green Obsidian
Architecture: 64bit ELF
Virtual Machine: none
CPU: 128 AMD EPYC 7502 32-Core Processor
Cache Size: 512 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:          503Gi       105Gi        93Gi       679Mi       304Gi       393Gi
	Swap:          15Gi        13Gi       2.7Gi

Graphics:
	63:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)	
	DeviceName:  Onboard VGA	
	Subsystem: Gigabyte Technology Co., Ltd Device [1458:1000]

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 4 months ago

Component: Unassigned → Input/Output
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Disk quota exceeded

comment:2 by Eric Pettersen, 4 months ago

Resolution: → nonchimerax
Status: accepted → closed
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