Crash opening .gro file

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505310246 (2025-05-31 02:46:39 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8009002a

Thread 0x00008498 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 324 in wait
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 622 in wait
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1392 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00008b98 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000077fc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000002d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\connection.py", line 878 in wait
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000898c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000819c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00000b78 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001d3c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003460 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000084ac (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000010a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00007670 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002940 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00007c58 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000018fc (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003464 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x0000839c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00005b4c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001d2c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006560 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001838 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001fac (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00007868 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002dc0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00001940 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006d90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00003ed4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00007184 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002f30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00006d2c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002330 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00008b90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00007620 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x000022ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002f60 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Thread 0x00002a48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\threading.py", line 995 in _bootstrap

Current thread 0x0000248c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
  File "C:\Program Files\ChimeraX 1.10rc202505310246\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.10rc202505310246 (2025-05-31)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show AlphaFold

> alphafold match P38398

1 AlphaFold model found using UniProt identifier: P38398 (UniProt P38398)  
Sequence Similarity  
---  
AlphaFold Model| Query Sequence| Identity %| Coverage %  
P38398 | P38398 | 100.0 | 100.0    
Opened 1 AlphaFold model  
> alphafold search P38398> alphafold predict P38398Please cite ColabFold:
> Making protein folding accessible to all. Nature Methods (2022) if you use
> these predictions.  
Running AlphaFold prediction  
> open pdb:6gvw | Summary of feedback from opening 6gvw fetched from pdb  
---  
warning | Atom H is not in the residue template for PRO /A:273  
  
6gvw title:  
Crystal structure of the BRCA1-A complex [more info...]  
  
Chain information for 6gvw #2  
---  
Chain | Description | UniProt  
A F | BRCA1-A complex subunit Abraxas 1 | ABRX1_MOUSE 1-407  
B G | Lys-63-specific deubiquitinase BRCC36 | BRCC3_MOUSE 1-291  
C H | BRISC and BRCA1-A complex member 2 | BABA2_MOUSE 1-383  
D I | BRISC and BRCA1-A complex member 1 | BABA1_MOUSE 1-333  
E J | BRCA1-A complex subunit RAP80 | UIMC1_MOUSE 275-334  
  
Non-standard residues in 6gvw #2  
---  
ZN — zinc ion  
  
Running AlphaFold prediction  

> close #2

> alphafold predict P38398

Running AlphaFold prediction  

> close

> open C:/Users/User/Downloads/md_0_1_noPBC.xtc

No atomic models open to read the coordinates into!  

> open C:/Users/User/Downloads/6bcx_chainA.pdb

Chain information for 6bcx_chainA.pdb #1  
---  
Chain | Description  
A | No description available  
  

> open C:/Users/User/Downloads/md_0_1.xtc

Specified structure has 15759 atoms whereas the coordinates are for 769324
atoms  

> close

> open C:/Users/User/Downloads/md_0_1.gro


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.10rc202505310246 (2025-05-31)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\\\Users\\\User\\\AppData\\\Local\\\Microsoft\\\Windows\\\INetCache\\\IE\\\DXNTHAQI\\\1[1].dlg

Unrecognized file suffix '.dlg'  




OpenGL version: 3.3.0 NVIDIA 560.94
OpenGL renderer: NVIDIA GeForce RTX 4070 Ti SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_GB.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: Gigabyte Technology Co., Ltd.
Model: Z790 UD AX
OS: Microsoft Windows 11 Education (Build 26100)
Memory: 68,470,222,848
MaxProcessMemory: 137,438,953,344
CPU: 32 Intel(R) Core(TM) i9-14900K
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.4
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202505310246
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.2
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.1
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.3.5
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.13.2
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1