'pip install pyKVFinder' fails with empty error message

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.10rc202506042337 (2025-06-04 23:37:35 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10rc202506042337 (2025-06-04)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\ldfjo\Downloads\Docking\2rlf.cif format mmcif

2rlf.cif title:  
Proton Channel M2 from Influenza A in complex with inhibitor rimantadine [more
info...]  
  
Chain information for 2rlf.cif  
---  
Chain | Description | UniProt  
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.1/C 1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.12/C 1.13/C 1.14/C 1.15/C 1.1/D 1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.12/D 1.13/D 1.14/D 1.15/D | Matrix protein 2 | M2_IAUDO 18-60  
  

> select H

21300 atoms, 2340 residues, 15 models selected  

> select solvent

Nothing selected  

> delete atoms

> delete bonds

> undo

Undo failed, probably because structures have been modified.  

> close

> open C:\Users\ldfjo\Downloads\Docking\2rlf.cif format mmcif

2rlf.cif title:  
Proton Channel M2 from Influenza A in complex with inhibitor rimantadine [more
info...]  
  
Chain information for 2rlf.cif  
---  
Chain | Description | UniProt  
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.1/C 1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.12/C 1.13/C 1.14/C 1.15/C 1.1/D 1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.12/D 1.13/D 1.14/D 1.15/D | Matrix protein 2 | M2_IAUDO 18-60  
  

> ui tool show "Add Hydrogens"

> addh #1.1-15

Summary of feedback from adding hydrogens to multiple structures  
---  
notes | Termini for 2rlf.cif (#1.1) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.1) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.1) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.1) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.1/A SER 23,
2rlf.cif #1.1/B SER 23, 2rlf.cif #1.1/C SER 23, 2rlf.cif #1.1/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.1/A LYS 60,
2rlf.cif #1.1/B LYS 60, 2rlf.cif #1.1/C LYS 60, 2rlf.cif #1.1/D LYS 60  
Chain-final residues that are not actual C termini:  
113 hydrogen bonds  
Termini for 2rlf.cif (#1.2) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.2) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.2) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.2) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.2/A SER 23,
2rlf.cif #1.2/B SER 23, 2rlf.cif #1.2/C SER 23, 2rlf.cif #1.2/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.2/A LYS 60,
2rlf.cif #1.2/B LYS 60, 2rlf.cif #1.2/C LYS 60, 2rlf.cif #1.2/D LYS 60  
Chain-final residues that are not actual C termini:  
115 hydrogen bonds  
Termini for 2rlf.cif (#1.3) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.3) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.3) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.3) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.3/A SER 23,
2rlf.cif #1.3/B SER 23, 2rlf.cif #1.3/C SER 23, 2rlf.cif #1.3/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.3/A LYS 60,
2rlf.cif #1.3/B LYS 60, 2rlf.cif #1.3/C LYS 60, 2rlf.cif #1.3/D LYS 60  
Chain-final residues that are not actual C termini:  
102 hydrogen bonds  
Termini for 2rlf.cif (#1.4) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.4) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.4) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.4) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.4/A SER 23,
2rlf.cif #1.4/B SER 23, 2rlf.cif #1.4/C SER 23, 2rlf.cif #1.4/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.4/A LYS 60,
2rlf.cif #1.4/B LYS 60, 2rlf.cif #1.4/C LYS 60, 2rlf.cif #1.4/D LYS 60  
Chain-final residues that are not actual C termini:  
111 hydrogen bonds  
Termini for 2rlf.cif (#1.5) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.5) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.5) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.5) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.5/A SER 23,
2rlf.cif #1.5/B SER 23, 2rlf.cif #1.5/C SER 23, 2rlf.cif #1.5/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.5/A LYS 60,
2rlf.cif #1.5/B LYS 60, 2rlf.cif #1.5/C LYS 60, 2rlf.cif #1.5/D LYS 60  
Chain-final residues that are not actual C termini:  
112 hydrogen bonds  
Termini for 2rlf.cif (#1.6) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.6) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.6) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.6) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.6/A SER 23,
2rlf.cif #1.6/B SER 23, 2rlf.cif #1.6/C SER 23, 2rlf.cif #1.6/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.6/A LYS 60,
2rlf.cif #1.6/B LYS 60, 2rlf.cif #1.6/C LYS 60, 2rlf.cif #1.6/D LYS 60  
Chain-final residues that are not actual C termini:  
116 hydrogen bonds  
Termini for 2rlf.cif (#1.7) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.7) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.7) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.7) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.7/A SER 23,
2rlf.cif #1.7/B SER 23, 2rlf.cif #1.7/C SER 23, 2rlf.cif #1.7/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.7/A LYS 60,
2rlf.cif #1.7/B LYS 60, 2rlf.cif #1.7/C LYS 60, 2rlf.cif #1.7/D LYS 60  
Chain-final residues that are not actual C termini:  
116 hydrogen bonds  
Termini for 2rlf.cif (#1.8) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.8) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.8) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.8) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.8/A SER 23,
2rlf.cif #1.8/B SER 23, 2rlf.cif #1.8/C SER 23, 2rlf.cif #1.8/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.8/A LYS 60,
2rlf.cif #1.8/B LYS 60, 2rlf.cif #1.8/C LYS 60, 2rlf.cif #1.8/D LYS 60  
Chain-final residues that are not actual C termini:  
112 hydrogen bonds  
Termini for 2rlf.cif (#1.9) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.9) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.9) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.9) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.9/A SER 23,
2rlf.cif #1.9/B SER 23, 2rlf.cif #1.9/C SER 23, 2rlf.cif #1.9/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.9/A LYS 60,
2rlf.cif #1.9/B LYS 60, 2rlf.cif #1.9/C LYS 60, 2rlf.cif #1.9/D LYS 60  
Chain-final residues that are not actual C termini:  
112 hydrogen bonds  
Termini for 2rlf.cif (#1.10) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.10) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.10) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.10) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.10/A SER 23,
2rlf.cif #1.10/B SER 23, 2rlf.cif #1.10/C SER 23, 2rlf.cif #1.10/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.10/A LYS 60,
2rlf.cif #1.10/B LYS 60, 2rlf.cif #1.10/C LYS 60, 2rlf.cif #1.10/D LYS 60  
Chain-final residues that are not actual C termini:  
105 hydrogen bonds  
Termini for 2rlf.cif (#1.11) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.11) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.11) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.11) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.11/A SER 23,
2rlf.cif #1.11/B SER 23, 2rlf.cif #1.11/C SER 23, 2rlf.cif #1.11/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.11/A LYS 60,
2rlf.cif #1.11/B LYS 60, 2rlf.cif #1.11/C LYS 60, 2rlf.cif #1.11/D LYS 60  
Chain-final residues that are not actual C termini:  
116 hydrogen bonds  
Termini for 2rlf.cif (#1.12) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.12) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.12) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.12) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.12/A SER 23,
2rlf.cif #1.12/B SER 23, 2rlf.cif #1.12/C SER 23, 2rlf.cif #1.12/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.12/A LYS 60,
2rlf.cif #1.12/B LYS 60, 2rlf.cif #1.12/C LYS 60, 2rlf.cif #1.12/D LYS 60  
Chain-final residues that are not actual C termini:  
117 hydrogen bonds  
Termini for 2rlf.cif (#1.13) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.13) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.13) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.13) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.13/A SER 23,
2rlf.cif #1.13/B SER 23, 2rlf.cif #1.13/C SER 23, 2rlf.cif #1.13/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.13/A LYS 60,
2rlf.cif #1.13/B LYS 60, 2rlf.cif #1.13/C LYS 60, 2rlf.cif #1.13/D LYS 60  
Chain-final residues that are not actual C termini:  
113 hydrogen bonds  
Termini for 2rlf.cif (#1.14) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.14) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.14) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.14) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.14/A SER 23,
2rlf.cif #1.14/B SER 23, 2rlf.cif #1.14/C SER 23, 2rlf.cif #1.14/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.14/A LYS 60,
2rlf.cif #1.14/B LYS 60, 2rlf.cif #1.14/C LYS 60, 2rlf.cif #1.14/D LYS 60  
Chain-final residues that are not actual C termini:  
121 hydrogen bonds  
Termini for 2rlf.cif (#1.15) chain A determined from SEQRES records  
Termini for 2rlf.cif (#1.15) chain B determined from SEQRES records  
Termini for 2rlf.cif (#1.15) chain C determined from SEQRES records  
Termini for 2rlf.cif (#1.15) chain D determined from SEQRES records  
Chain-initial residues that are actual N termini:  
Chain-initial residues that are not actual N termini: 2rlf.cif #1.15/A SER 23,
2rlf.cif #1.15/B SER 23, 2rlf.cif #1.15/C SER 23, 2rlf.cif #1.15/D SER 23  
Chain-final residues that are actual C termini: 2rlf.cif #1.15/A LYS 60,
2rlf.cif #1.15/B LYS 60, 2rlf.cif #1.15/C LYS 60, 2rlf.cif #1.15/D LYS 60  
Chain-final residues that are not actual C termini:  
115 hydrogen bonds  
72 hydrogens added  
  

> ui tool show "Add Charges"

Closest equivalent command: addcharge standardizeResidues 5BU,CSL,MSE,UMS  
Using Amber 20 recommended default charges and atom types for standard
residues  
Assigning partial charges to residue RIM (net charge +1) with gasteiger method  
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.10rc202506042337/bin/amber20/bin/antechamber -i
C:\Users\ldfjo\AppData\Local\Temp\tmp34bqeike\ante.in.mol2 -fi mol2 -o
C:\Users\ldfjo\AppData\Local\Temp\tmp34bqeike\ante.out.mol2 -fo mol2 -c gas
-nc 1 -j 5 -s 2 -dr n  
(RIM) ``  
(RIM) `Welcome to antechamber 20.0: molecular input file processor.`  
(RIM) ``  
(RIM) `Info: Finished reading file
(C:\Users\ldfjo\AppData\Local\Temp\tmp34bqeike\ante.in.mol2); atoms read (35),
bonds read (37).`  
(RIM) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`  
(RIM) `Running: "C:/Program Files/ChimeraX
1.10rc202506042337/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`  
(RIM) `bash.exe: warning: could not find /tmp, please create!`  
(RIM) ``  
(RIM) ``  
(RIM) `Running: "C:/Program Files/ChimeraX
1.10rc202506042337/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff`  
(RIM) `bash.exe: warning: could not find /tmp, please create!`  
(RIM) `Running: "C:/Program Files/ChimeraX
1.10rc202506042337/bin/amber20/bin/atomtype" -i ANTECHAMBER_GAS.AC -o
ANTECHAMBER_GAS_AT.AC -d "C:/Program Files/ChimeraX
1.10rc202506042337/bin/amber20/dat/antechamber/ATOMTYPE_GAS.DEF"`  
(RIM) `bash.exe: warning: could not find /tmp, please create!`  
(RIM) ``  
Charges for residue RIM determined  

> lighting full

> lighting simple

> select ligand

2100 atoms, 2220 bonds, 60 residues, 15 models selected  

> delete atoms sel

> delete bonds sel

> save "C:/Users/Public/Desktop/M2 channel prepared.pdb"

Cannot save 'C:/Users/Public/Desktop/M2 channel prepared.pdb': Unable to open
file 'C:/Users/Public/Desktop/M2 channel prepared.pdb' for writing  

> save "C:/Users/ldfjo/Downloads/Docking/M2 channel updated.pdb"

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> ui tool show "Find Cavities"

pyKVFinder module not installed; fetching from PyPi repository...  
'pip install pyKVFinder' failed. Error from pip:  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\kvfinder\\__init__.py", line 48, in check_pyKVFinder  
import pyKVFinder  
ModuleNotFoundError: No module named 'pyKVFinder'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 571, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1399, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\kvfinder\\__init__.py", line 42, in start_tool  
check_pyKVFinder(session.logger)  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\kvfinder\\__init__.py", line 54, in check_pyKVFinder  
run(logger.session, pip_cmd, log=False)  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3219, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\commands\pip.py", line 88, in pip  
run_logged_pip(pip_cmd, session.logger)  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\python_utils.py", line 143, in run_logged_pip  
raise RuntimeError(s)  
RuntimeError  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1891, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3219, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\ui\cmd.py", line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Find
Cavities in bundle ChimeraX-KVFinder:  
  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Find
Cavities in bundle ChimeraX-KVFinder:  
  
  
File "C:\Program Files\ChimeraX 1.10rc202506042337\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.5333
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: fr_FR.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: Inspiron 15 3511
OS: Microsoft Windows 11 Home (Build 22631)
Memory: 16,901,771,264
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.3.4
    build: 1.2.2.post1
    certifi: 2025.4.26
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10rc202506042337
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.8.2
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.1
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.0
    pytest-cov: 6.1.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 26.4.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.4.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

[Eric Pettersen]

Duplicate of #17229