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Opened 4 months ago
Closed 4 months ago
#17953 closed defect (can't reproduce)
Crash using open/save dialog
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505090204 (2025-05-09 02:04:01 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00003938Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.pycode 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
", line Windows fatal exception: 193code 0x in _from_kwarg_name_to_kwarg_name_
8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line
268 in
Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py
", line Windows fatal exception: 368code 0x in 8001010eevent_loop
File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py8001010e"
, line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268Windows fatal exception: in code 0x8001010e
File "Windows fatal exception: C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.pycode 0x"8001010e, line
368Windows fatal exception: in code 0xevent_loop8001010e
File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py8001010e"
Windows fatal exception: code 0x, line 1057 in init8001010e
File "Windows fatal exception: C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e, line
1220 in Windows fatal exception: code 0x
8001010e File
"", line 88 in _run_code
Windows fatal exception: File code 0x"8001010e
", line Windows fatal exception: 198code 0x in 8001010e_run_module_as_main
Windows fatal exception: code 0x8001010eWindows fatal exception:
code 0xThread 0x8001010e00003938
(most recent call first):
File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py8001010e"
, line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312Windows fatal exception: in code 0xshow_open_file_dialog8001010e
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e"
C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e
368Windows fatal exception: in code 0xevent_loop8001010e
File "Windows fatal exception: C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e
, line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File Windows fatal exception: code 0xWindows fatal exception: 8001010e
code 0x"8001010eWindows fatal exception:
Windows fatal exception: C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.pyWindows fatal exception: "code 0x8001010ecode 0x, line 8001010e
1057
in Windows fatal exception: initcode 0x
File code 0x8001010eWindows fatal exception:
code 0x8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eWindows fatal exception: code 0x
8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Windows fatal exception: code 0x8001010e
8001010e"
C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line Windows fatal exception: 1220code 0x in 8001010e
Windows fatal exception: File code 0x"8001010e
"Windows fatal exception: , line Windows fatal exception: code 0x888001010e in
_run_codeWindows fatal exception:
code 0x File 8001010e"
", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_code 0x8001010e
File Windows fatal exception: "code 0x8001010eC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py
"Windows fatal exception: , line code 0x3128001010e in
show_open_file_dialogWindows fatal exception:
code 0x File 8001010e
"Windows fatal exception: C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x8001010e"
, line 268 in Windows fatal exception:
code 0x File 8001010e"
C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368
in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x10578001010e in
init
Windows fatal exception: File code 0x8001010e
Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py8001010e"
, line Windows fatal exception: 1220code 0x in 8001010e
Windows fatal exception: code 0x File 8001010e"
Windows fatal exception: "code 0x, line 8001010e88
in Windows fatal exception: code 0x_run_code8001010e
File "
", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 312 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 268 in
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1057 in init
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\core\__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003938 (most recent call first):
File "C:\Program Files\ChimeraX 1.10rc202505090204\bin\Lib\site-packages\chimerax\ui\graphics.py"Windows fatal exception: access violation
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 8qer fromDatabase pdb format mmcif
Summary of feedback from opening 8qer fetched from pdb
---
notes | Fetching compressed mmCIF 8qer from http://files.rcsb.org/download/8qer.cif
Fetching CCD CL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/CL/CL.cif
Fetching CCD UGL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/UGL/UGL.cif
8qer title:
Pseudomonas aeruginosa FabF C164A in complex with
4-(1H-pyrazole-3-carbonylamino)pentanoic acid [more info...]
Chain information for 8qer #1
---
Chain | Description | UniProt
A B | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | G3XDA2_PSEAE 1-414
Non-standard residues in 8qer #1
---
CL — chloride ion
DMS — dimethyl sulfoxide
EDO — 1,2-ethanediol (ethylene glycol)
FMT — formic acid
UGL — (4~{R})-4-(1~{H}-pyrazol-3-ylcarbonylamino)pentanoic acid
8qer mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
26 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select /B
3189 atoms, 3129 bonds, 529 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> ui tool show "Dock Prep"
Starting dock prep
Deleting solvent
Deleting non-metal-complex ions
Deleting non-current alt locs
Summary of feedback from adding hydrogens to 8qer #1
---
notes | Termini for 8qer (#1) chain A determined from SEQRES records
Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini: /A SER 0
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A PHE 412
448 hydrogen bonds
Adding 'H' to /A SER 0
/A PHE 412 is not terminus, removing H atom from 'C'
3023 hydrogens added
Closest equivalent command: addcharge standardizeResidues none
Using Amber 20 recommended default charges and atom types for standard
residues
Assigning partial charges to residue UGL (net charge -1) with am1-bcc method
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
C:\Users\Alberto\AppData\Local\Temp\tmpmltd07fx\ante.in.mol2 -fi mol2 -o
C:\Users\Alberto\AppData\Local\Temp\tmpmltd07fx\ante.out.mol2 -fo mol2 -c bcc
-nc -1 -j 5 -s 2 -dr n
(UGL) ``
(UGL) `Welcome to antechamber 20.0: molecular input file processor.`
(UGL) ``
(UGL) `Info: Finished reading file
(C:\Users\Alberto\AppData\Local\Temp\tmpmltd07fx\ante.in.mol2); atoms read
(27), bonds read (27).`
(UGL) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(UGL) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(UGL) `bash.exe: warning: could not find /tmp, please create!`
(UGL) ``
(UGL) ``
(UGL) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff`
(UGL) `bash.exe: warning: could not find /tmp, please create!`
(UGL) `Info: Total number of electrons: 112; net charge: -1`
(UGL) ``
(UGL) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`
(UGL) `bash.exe: warning: could not find /tmp, please create!`
(UGL) ``
(UGL) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/am1bcc" -i ANTECHAMBER_AM1BCC_PRE.AC -o
ANTECHAMBER_AM1BCC.AC -f ac -p "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/dat/antechamber/BCCPARM.DAT" -s 2 -j 1`
(UGL) `bash.exe: warning: could not find /tmp, please create!`
(UGL) ``
(UGL) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -f ac -p bcc -o
ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`
(UGL) `bash.exe: warning: could not find /tmp, please create!`
(UGL) ``
Charges for residue UGL determined
Assigning partial charges to residue FMT (net charge +0) with am1-bcc method
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
C:\Users\Alberto\AppData\Local\Temp\tmpfdfs1wi6\ante.in.mol2 -fi mol2 -o
C:\Users\Alberto\AppData\Local\Temp\tmpfdfs1wi6\ante.out.mol2 -fo mol2 -c bcc
-nc 0 -j 5 -s 2 -dr n
(FMT) ``
(FMT) `Welcome to antechamber 20.0: molecular input file processor.`
(FMT) ``
(FMT) `Info: Finished reading file
(C:\Users\Alberto\AppData\Local\Temp\tmpfdfs1wi6\ante.in.mol2); atoms read
(5), bonds read (4).`
(FMT) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(FMT) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(FMT) `bash.exe: warning: could not find /tmp, please create!`
(FMT) ``
(FMT) ``
(FMT) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff`
(FMT) `bash.exe: warning: could not find /tmp, please create!`
(FMT) `Info: Total number of electrons: 24; net charge: 0`
(FMT) ``
(FMT) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`
(FMT) `bash.exe: warning: could not find /tmp, please create!`
(FMT) ``
(FMT) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/am1bcc" -i ANTECHAMBER_AM1BCC_PRE.AC -o
ANTECHAMBER_AM1BCC.AC -f ac -p "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/dat/antechamber/BCCPARM.DAT" -s 2 -j 1`
(FMT) `bash.exe: warning: could not find /tmp, please create!`
(FMT) ``
(FMT) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -f ac -p bcc -o
ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`
(FMT) `bash.exe: warning: could not find /tmp, please create!`
(FMT) ``
Charges for residue FMT determined
Assigning partial charges to residue DMS (net charge +0) with am1-bcc method
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
C:\Users\Alberto\AppData\Local\Temp\tmpoo9fax2n\ante.in.mol2 -fi mol2 -o
C:\Users\Alberto\AppData\Local\Temp\tmpoo9fax2n\ante.out.mol2 -fo mol2 -c bcc
-nc 0 -j 5 -s 2 -dr n
(DMS) ``
(DMS) `Welcome to antechamber 20.0: molecular input file processor.`
(DMS) ``
(DMS) `Info: Finished reading file
(C:\Users\Alberto\AppData\Local\Temp\tmpoo9fax2n\ante.in.mol2); atoms read
(10), bonds read (9).`
(DMS) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(DMS) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(DMS) `bash.exe: warning: could not find /tmp, please create!`
(DMS) ``
(DMS) ``
(DMS) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff`
(DMS) `bash.exe: warning: could not find /tmp, please create!`
(DMS) `Info: Total number of electrons: 42; net charge: 0`
(DMS) ``
(DMS) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`
(DMS) `bash.exe: warning: could not find /tmp, please create!`
(DMS) ``
(DMS) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/am1bcc" -i ANTECHAMBER_AM1BCC_PRE.AC -o
ANTECHAMBER_AM1BCC.AC -f ac -p "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/dat/antechamber/BCCPARM.DAT" -s 2 -j 1`
(DMS) `bash.exe: warning: could not find /tmp, please create!`
(DMS) ``
(DMS) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -f ac -p bcc -o
ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`
(DMS) `bash.exe: warning: could not find /tmp, please create!`
(DMS) ``
Charges for residue DMS determined
Assigning partial charges to residue EDO (net charge +0) with am1-bcc method
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
C:\Users\Alberto\AppData\Local\Temp\tmpdygzzgjg\ante.in.mol2 -fi mol2 -o
C:\Users\Alberto\AppData\Local\Temp\tmpdygzzgjg\ante.out.mol2 -fo mol2 -c bcc
-nc 0 -j 5 -s 2 -dr n
(EDO) ``
(EDO) `Welcome to antechamber 20.0: molecular input file processor.`
(EDO) ``
(EDO) `Info: Finished reading file
(C:\Users\Alberto\AppData\Local\Temp\tmpdygzzgjg\ante.in.mol2); atoms read
(10), bonds read (9).`
(EDO) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(EDO) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(EDO) `bash.exe: warning: could not find /tmp, please create!`
(EDO) ``
(EDO) ``
(EDO) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff`
(EDO) `bash.exe: warning: could not find /tmp, please create!`
(EDO) `Info: Total number of electrons: 34; net charge: 0`
(EDO) ``
(EDO) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`
(EDO) `bash.exe: warning: could not find /tmp, please create!`
(EDO) ``
(EDO) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/am1bcc" -i ANTECHAMBER_AM1BCC_PRE.AC -o
ANTECHAMBER_AM1BCC.AC -f ac -p "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/dat/antechamber/BCCPARM.DAT" -s 2 -j 1`
(EDO) `bash.exe: warning: could not find /tmp, please create!`
(EDO) ``
(EDO) `Running: "C:/Program Files/ChimeraX
1.10rc202505090204/bin/amber20/bin/atomtype" -f ac -p bcc -o
ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`
(EDO) `bash.exe: warning: could not find /tmp, please create!`
(EDO) ``
Charges for residue EDO determined
Dock prep finished
> save C:/Users/Alberto/Desktop/8qer_dockprep.mol2
> select ::name="DMS"
10 atoms, 9 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="EDO"
10 atoms, 9 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="FMT"
35 atoms, 28 bonds, 7 residues, 1 model selected
> select ::name="FMT"
35 atoms, 28 bonds, 7 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="UGL"
27 atoms, 27 bonds, 1 residue, 1 model selected
> label sel atoms attribute charge
> select ::name="UGL"
27 atoms, 27 bonds, 1 residue, 1 model selected
> close session
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 30.0.101.2079
OpenGL renderer: Intel(R) Iris(R) Plus Graphics
OpenGL vendor: Intel
Python: 3.11.4
Locale: it_IT.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: HP
Model: HP 250 G8 Notebook PC
OS: Microsoft Windows 11 Enterprise (Build 26100)
Memory: 16,951,066,624
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-1065G7 CPU @ 1.30GHz
OSLanguage: it-IT
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.3.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.3.2
build: 1.2.2.post1
certifi: 2025.4.26
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.3
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.5
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.6
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10rc202505090204
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.1
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.8.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.57.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.13.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.5.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.3.5
pytest-cov: 6.1.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 26.4.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.13.2
tzdata: 2025.2
urllib3: 2.4.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
Change History (2)
comment:1 by , 4 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → UI |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using open/save dialog |
comment:2 by , 4 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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