Opened 5 months ago

Last modified 4 months ago

#17913 assigned defect

Problem installing XMAS

Reported by: pascal.albanese@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc: Zach Pearson, pett
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
not able to install XMAS from the tool shed on versione 1.8 - 1.9 and 1.10 release candidate on win 11 

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> devel install C:\Users\pa273168\ChimeraX_XMAS_bundle-
> main\ChimeraX_XMAS_bundle-main

running build  
running build_py  
running bdist_wheel  
installing to build\bdist.win-amd64\wheel  
running install  
running install_lib  
warning: install_lib: 'build\lib' does not exist -- no Python modules to
install  
  
running install_egg_info  
running egg_info  
creating ChimeraX_XMAS.egg-info  
writing ChimeraX_XMAS.egg-info\PKG-INFO  
writing dependency_links to ChimeraX_XMAS.egg-info\dependency_links.txt  
writing top-level names to ChimeraX_XMAS.egg-info\top_level.txt  
writing manifest file 'ChimeraX_XMAS.egg-info\SOURCES.txt'  
reading manifest file 'ChimeraX_XMAS.egg-info\SOURCES.txt'  
writing manifest file 'ChimeraX_XMAS.egg-info\SOURCES.txt'  
Copying ChimeraX_XMAS.egg-info to build\bdist.win-
amd64\wheel\\.\ChimeraX_XMAS-1.1.3-py3.11.egg-info  
running install_scripts  
creating build\bdist.win-amd64\wheel\ChimeraX_XMAS-1.1.3.dist-info\WHEEL  
creating 'dist\ChimeraX_XMAS-1.1.3-py3-none-any.whl' and adding
'build\bdist.win-amd64\wheel' to it  
adding 'ChimeraX_XMAS-1.1.3.dist-info/METADATA'  
adding 'ChimeraX_XMAS-1.1.3.dist-info/WHEEL'  
adding 'ChimeraX_XMAS-1.1.3.dist-info/top_level.txt'  
adding 'ChimeraX_XMAS-1.1.3.dist-info/RECORD'  
removing build\bdist.win-amd64\wheel  
Distribution is in C:\Users\AL-
PA273168\Desktop\dist\ChimeraX_XMAS-1.1.3-py3-none-any.whl  
[toolshed install](help:user/commands/toolshed.html#install) C:\Users\AL-  
PA273168\Desktop\dist\ChimeraX_XMAS-1.1.3-py3-none-any.whl  
  
[toolshed install C:\Users\AL-  
PA273168\Desktop\dist\ChimeraX_XMAS-1.1.3-py3-none-any.whl](cxcmd:toolshed  
install C:\\\Users\\\AL-
PA273168\\\Desktop\\\dist\\\ChimeraX_XMAS-1.1.3-py3-none-  
any.whl)  
  
tried to get metadata for package installed in editable mode ('ChimeraX-XMAS')
but could not find the package's finder.py or path file  
Installed ChimeraX-XMAS (1.1.3)  
  

> ui tool show XMAS

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 501, in get_module  
m = importlib.import_module(self.package_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\importlib\\__init__.py", line 126,
in import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "<frozen importlib._bootstrap>", line 1204, in _gcd_import  
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load  
File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked  
ModuleNotFoundError: No module named 'chimerax.XMAS'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 570, in start_tool  
api = self._get_api(session.logger)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 520, in _get_api  
m = self.get_module()  
^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 503, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-XMAS's
module: No module named 'chimerax.XMAS'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 1819, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\cmd.py",
line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool XMAS in
bundle ChimeraX-XMAS:  
Error importing bundle ChimeraX-XMAS's module: No module named 'chimerax.XMAS'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool XMAS in
bundle ChimeraX-XMAS:  
Error importing bundle ChimeraX-XMAS's module: No module named 'chimerax.XMAS'  
  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  

> ui tool show XMAS

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 501, in get_module  
m = importlib.import_module(self.package_name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\importlib\\__init__.py", line 126,
in import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "<frozen importlib._bootstrap>", line 1204, in _gcd_import  
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load  
File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked  
ModuleNotFoundError: No module named 'chimerax.XMAS'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 570, in start_tool  
api = self._get_api(session.logger)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 520, in _get_api  
m = self.get_module()  
^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 503, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-XMAS's
module: No module named 'chimerax.XMAS'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py",
line 1819, in <lambda>  
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\cmd.py",
line 219, in ui_tool_show  
return bi.start_tool(session, name)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool XMAS in
bundle ChimeraX-XMAS:  
Error importing bundle ChimeraX-XMAS's module: No module named 'chimerax.XMAS'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool XMAS in
bundle ChimeraX-XMAS:  
Error importing bundle ChimeraX-XMAS's module: No module named 'chimerax.XMAS'  
  
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 578, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 553.05
OpenGL renderer: NVIDIA RTX 2000 Ada Generation Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: fr_FR.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: Dell Inc.
Model: Precision 5490
OS: Microsoft Windows 11 Entreprise (Build 22631)
Memory: 68,129,243,136
MaxProcessMemory: 137,438,953,344
CPU: 22 Intel(R) Core(TM) Ultra 7 165H
OSLanguage: fr-FR

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-XMAS: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.1
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pywin32: 306
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
    WMI: 1.5.1

Change History (9)

comment:1 by pett, 5 months ago

Cc: Zach Pearson added
Component: Unassigned → Tool Shed
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Problem installing XMAS

Used "devel install"

comment:2 by pascal.albanese@…, 5 months ago

Hi,
Yes i did try that too, running either as admin or not, will try some different approches …
No one else reported this?

Thx
Pascal

MSCA fellow @
Light, Photosynthesis & Metabolism (LPM) &
Exploring the Dynamics of Proteomes (EDyP)
IRIG, CEA-Grenoble
17 rue des Martyrs, 38000 Grenoble, France
Tél. +33 (0)4.38.78.28.77
Bat. 42 - P. B112

Last edited 4 months ago by Greg Couch (previous) (diff)

comment:3 by pascal.albanese@…, 5 months ago

With the devel install I get this error: 

running build
running build_py
running bdist_wheel
installing to build\bdist.win-amd64\wheel
running install
running install_lib
warning: install_lib: 'build\lib' does not exist -- no Python modules to install

running install_egg_info
running egg_info
writing ChimeraX_XMAS.egg-info\PKG-INFO
writing dependency_links to ChimeraX_XMAS.egg-info\dependency_links.txt
writing top-level names to ChimeraX_XMAS.egg-info\top_level.txt
reading manifest file 'ChimeraX_XMAS.egg-info\SOURCES.txt'
writing manifest file 'ChimeraX_XMAS.egg-info\SOURCES.txt'
Copying ChimeraX_XMAS.egg-info to build\bdist.win-amd64\wheel\.\ChimeraX_XMAS-1.1.3-py3.11.egg-info
running install_scripts
creating build\bdist.win-amd64\wheel\chimerax_xmas-1.1.3.dist-info\WHEEL
creating 'dist\chimerax_xmas-1.1.3-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
adding 'chimerax_xmas-1.1.3.dist-info/METADATA'
adding 'chimerax_xmas-1.1.3.dist-info/WHEEL'
adding 'chimerax_xmas-1.1.3.dist-info/top_level.txt'
adding 'chimerax_xmas-1.1.3.dist-info/RECORD'
removing build\bdist.win-amd64\wheel
Distribution is in C:\Users\pa273168\Desktop\dist\chimerax_xmas-1.1.3-py3-none-any.whl
[toolshed install](help:user/commands/toolshed.html#install)
C:\Users\pa273168\Desktop\dist\chimerax_xmas-1.1.3-py3-none-any.whl

[toolshed install C:\Users\pa273168\Desktop\dist\chimerax_xmas-1.1.3-py3-none-
any.whl](cxcmd:toolshed install
C:\\Users\\pa273168\\Desktop\\dist\\chimerax_xmas-1.1.3-py3-none-any.whl)

tried to get metadata for package installed in editable mode ('ChimeraX-XMAS') but could not find the package's http://finder.py or path file
tried to get metadata for package installed in editable mode ('ChimeraX-XMAS') but could not find the package's http://finder.py or path file
No change in list of installed bundles
Last edited 4 months ago by Greg Couch (previous) (diff)

comment:4 by pascal.albanese@…, 5 months ago

P.S. as an additional info, the previous version of the bundle can be installed >> Installed ChimeraX-XMAS (1.1.2)

Last edited 4 months ago by Greg Couch (previous) (diff)

comment:5 by pascal.albanese@…, 5 months ago

The latest version is stuck in the downloading >>> Downloading bundle ChimeraX_XMAS-1.1.3-py3-none-any.whl

Last edited 4 months ago by Greg Couch (previous) (diff)

comment:6 by pett, 4 months ago

Try going to cxtoolshed.rbvi.ucsf.edu in a regular web browser and downloading the XMAS wheel. Then in ChimeraX run the command "toolshed install /path/to/where/you/downloaded/ChimeraX_XMAS-1.1.3-py3-none-any.whl" (note; *toolshed* install, not *devel* install).

comment:7 by pett, 4 months ago

Cc: pett added

comment:8 by pascal.albanese@…, 4 months ago

Still some issues with this version apparently:

toolshed installl C:\Users\pa273168\Downloads\ChimeraX_XMAS-1.1.3-py3-none-any.whl
ERROR: Directory 'C:\\Users\\pa273168\\Downloads\\ChimeraX_XMAS-1.1.3-py3-none-any.whl' is not installable. Neither 'setup.py' nor 'pyproject.toml' found.

1.1.2 works with toolshed install 

toolshed installl C:\Users\pa273168\Downloads\ChimeraX_XMAS-1.1.2-py3-none-any.whl
tried to get metadata for package installed in editable mode ('ChimeraX-XMAS') but could not find the package's http://finder.py or path file
[Repeated 1 time(s)]Installed ChimeraX-XMAS (1.1.2)
Last edited 4 months ago by Greg Couch (previous) (diff)

comment:9 by Greg Couch, 4 months ago

I was able to install XMAS on a Linux and a Windows system in daily builds. The Windows system took a long time to install, but it worked.

I've modified the daily build to do a better job of capturing the subprocess output from installing bundles. Please try again with a daily build from 13 June 2025 or later to see if you get any more info.

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