Opened 7 years ago
Closed 7 years ago
#1791 closed enhancement (fixed)
single-color space-filling preset lighting
Reported by: | Owned by: | pett | |
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Priority: | normal | Milestone: | |
Component: | Depiction | Version: | |
Keywords: | Cc: | Elaine Meng | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.2.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-03-13) Description Hi, The default lighting mode for the "single color space filling" preset gives a mottled appearance which doesn't seem to correspond to any of the lighting modes exposed in the GUI (e.g. here see a comparison with soft lighting). Cheers Oli Log: > camera ortho > lighting soft > set bgColor white > lighting depthCueColor white > cofr centerOfView UCSF ChimeraX version: 0.9 (2019-03-13) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 1bl8 format mmCIF fromDatabase pdb 1bl8 title: Potassium channel (KCSA) from streptomyces lividans [more info...] Chain information for 1bl8 #1 --- Chain | Description A B C D | protein (potassium channel protein) > preset cartoon > preset '"original look"' > preset sticks > preset '"space-filling (chain colors)"' > preset '"space-filling (single color)"' > lighting soft > lighting full > lighting soft > preset '"space-filling (single color)"' > lighting soft > lighting full > lighting soft > lighting simple > set bgColor black > lighting simple > lighting shadows true > lighting soft > lighting gentle > lighting soft > preset '"space-filling (chain colors)"' > preset '"space-filling (single color)"' > lighting soft OpenGL version: 4.1 ATI-2.4.10 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc. File attachment: Screen Shot 2019-03-19 at 2.04.49 PM.png
Attachments (1)
Change History (4)
by , 7 years ago
Attachment: | Screen Shot 2019-03-19 at 2.04.49 PM.png added |
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comment:1 by , 7 years ago
Cc: | added |
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Component: | Unassigned → Depiction |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → single-color space-filling preset lighting |
Type: | defect → enhancement |
comment:2 by , 7 years ago
Hi Oliver,
The "Initial Styles" presets correspond exactly to what ChimeraX shows for various structure types when they are opened. The "Space-Filling (single color)" preset is only used when huge structures (>256 chains) are opened and therefore uses the less computationally demanding "soft multiShadow 16" as its lighting. Since that preset may now be applied in situations with far fewer atoms, I inserted a cutoff in the code such that for non-huge systems it will instead just use "soft".
Thanks for pointing this out.
--Eric
comment:3 by , 7 years ago
Resolution: | → fixed |
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Status: | accepted → closed |
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