ChimeraX bug report submission

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-14.7.1-arm64-arm-64bit
ChimeraX Version: 1.9.dev202410250340 (2024-10-25 03:40:02 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.9.dev202410250340 (2024-10-25)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "/Users/mansoore.esmaili/Desktop/MST1R/LocalResolution_1/session of
> local resolutionmapchanged_Nov152024.cxs" format session

Opened cryosparc_P1083_J180_004_volume_map_sharp_full.ccp4 as #1, grid size
340,340,340, pixel 0.839, shown at level 0.0452, step 1, values float32  
Opened cryosparc_P1083_J180_004_volume_map_sharp_local_resolution.ccp4 as #2,
grid size 340,340,340, pixel 0.839, shown at level 13.7, step 2, values
float32  
Map values for surface "surface": minimum 3.579, mean 4.685, maximum 11.29  
Log from Fri Nov 15 15:56:37 2024UCSF ChimeraX version: 1.9.dev202410250340
(2024-10-25)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open /Users/mansoore.esmaili/Downloads/lowres1078_fit_to2qe3assambly1cif.cxs
> format session

Opened cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc as #1, grid size
128,128,128, pixel 1.97, shown at level 0.0373, step 1, values float32  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  
Log from Thu Oct 31 14:41:43 2024 Startup Messages  
---  
warning | QCoreApplication::postEvent: Unexpected null receiver  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.9.dev202410250340 (2024-10-25)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Unable to load numpy_formathandler accelerator from OpenGL_accelerate  

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb

2qe3.pdb title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
Chain information for 2qe3.pdb #1  
---  
Chain | Description | UniProt  
A | TNF superfamily ligand TL1A | Q8NFE9_HUMAN 5-184  
  
Non-standard residues in 2qe3.pdb #1  
---  
CL — chloride ion  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Alignment identifier is 1/A  
Destroying pre-existing alignment with identifier 1/A  
Alignment identifier is 1/A  

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1050_J339_004_volume_map_sharp.mrc

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc as #2, grid size
300,300,300, pixel 0.839, shown at level 0.0623, step 2, values float32  

> volume #2 step 1

> view clip false

> show target m

Cell requested for row 1 is out of bounds for table with 3 rows! Resizing
table model.  

Cell requested for row 0 is out of bounds for table with 3 rows! Resizing
table model.  

> select add #1

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 3 models selected  

> select subtract #1

Nothing selected  

> ui mousemode right zoom

[Repeated 1 time(s)]

> ui mousemode right "translate selected models"

[Repeated 2 time(s)]

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models #2,1,0,0,11.732,0,1,0,-33.639,0,0,1,13.931

> view matrix models #2,1,0,0,8.9379,0,1,0,-29.9,0,0,1,13.97

> ui mousemode right "rotate selected models"

> select add #2

2 models selected  

> view matrix models
> #2,0.28477,0.70398,0.65063,-50.41,-0.60284,0.65924,-0.44944,123.96,-0.74531,-0.26424,0.61211,169.92

> view matrix models
> #2,0.28182,0.78753,0.54807,-48.673,-0.65027,0.57679,-0.49443,143.12,-0.70549,-0.21705,0.67466,153.7

> view matrix models
> #2,0.22163,0.29252,0.93022,-26.777,-0.42074,0.88926,-0.1794,49.898,-0.87969,-0.35163,0.32016,225.08

> view matrix models
> #2,0.058323,0.9553,-0.28983,45.014,-0.8898,-0.081884,-0.44894,238.34,-0.45261,0.28408,0.84525,51.966

> view matrix models
> #2,-0.68173,0.71473,-0.15626,144.4,-0.057012,-0.26483,-0.96261,213.11,-0.72938,-0.64733,0.22129,249.78

> select add #1

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 5 models selected  

> select subtract #2

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 3 models selected  

> view matrix models
> #1,0.99869,-0.039329,0.032735,0.17289,0.039648,0.99917,-0.009163,0.29429,-0.032347,0.010449,0.99942,-0.28544

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,99.279,-0.057012,-0.26483,-0.96261,217.16,-0.72938,-0.64733,0.22129,257.64

> view matrix models
> #2,-0.68173,0.71473,-0.15626,24.527,-0.057012,-0.26483,-0.96261,242.12,-0.72938,-0.64733,0.22129,255.64

> select subtract #1

Nothing selected  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,23.775,-0.057012,-0.26483,-0.96261,242.43,-0.72938,-0.64733,0.22129,255.86

> view matrix models
> #1,0.99869,-0.039329,0.032735,-17.908,0.039648,0.99917,-0.009163,26.798,-0.032347,0.010449,0.99942,-3.4116

> ui mousemode right "rotate selected models"

> ui tool show "Fit in Map"

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.000665, steps = 92  
shifted from previous position = 2.4  
rotated from previous position = 4.43 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67017445 -0.10542350 -0.73467822 229.16921311  
0.72059361 -0.32954207 -0.61003843 195.39485902  
-0.17779499 -0.93823660 0.29681817 158.54148193  
Axis -0.31290516 -0.53093421 0.78752729  
Axis point 115.77205515 189.50676524 -0.00000000  
Rotation angle (degrees) 148.36964092  
Shift along axis -50.59430068  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,0.99968,-0.017053,0.018459,-44.613,0.018517,0.99644,-0.082274,54.8,-0.01699,0.08259,0.99644,17.819

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.001195, steps = 92  
shifted from previous position = 4.73  
rotated from previous position = 12.1 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.68727935 -0.18333628 -0.70287617 234.02415421  
0.68010746 -0.50229368 -0.53399897 157.76465508  
-0.25514887 -0.84503779 0.46990444 132.74693043  
Axis -0.30459767 -0.43845554 0.84556313  
Axis point 117.31924324 149.89444440 0.00000000  
Rotation angle (degrees) 149.29798215  
Shift along axis -28.21008993  
  

> view matrix models
> #1,0.9945,-0.10197,0.024079,-13.627,0.10468,0.95692,-0.27084,30.136,0.0045761,0.27187,0.96232,15.382

> view matrix models
> #1,0.9945,-0.10197,0.024079,32.884,0.10468,0.95692,-0.27084,22.266,0.0045761,0.27187,0.96232,33.181

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.002207, steps = 64  
shifted from previous position = 2.53  
rotated from previous position = 6.37 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.73784733 -0.22424913 -0.63662678 166.46417869  
0.63157446 -0.56210982 -0.53399088 209.22042826  
-0.23810718 -0.79608095 0.55638124 161.97284474  
Axis -0.26750249 -0.40674942 0.87349718  
Axis point 75.96776947 167.73527020 0.00000000  
Rotation angle (degrees) 150.66708000  
Shift along axis 11.85295233  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,7.3143,-0.057012,-0.26483,-0.96261,236.88,-0.72938,-0.64733,0.22129,248.12

> view matrix models
> #1,0.99162,-0.12448,-0.034592,60.319,0.10401,0.92796,-0.35786,35.389,0.076647,0.35126,0.93313,41.963

> view matrix models
> #2,-0.68173,0.71473,-0.15626,89.513,-0.057012,-0.26483,-0.96261,262.99,-0.72938,-0.64733,0.22129,288.39

> view matrix models
> #1,0.99162,-0.12448,-0.034592,114.28,0.10401,0.92796,-0.35786,47.142,0.076647,0.35126,0.93313,73.753

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.002425, steps = 88  
shifted from previous position = 4.88  
rotated from previous position = 2.87 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.76272710 -0.23377187 -0.60299095 150.13450565  
0.61566506 -0.54792382 -0.56633561 215.06497810  
-0.19799977 -0.80319998 0.56184152 152.39688960  
Axis -0.24409077 -0.41734690 0.87535208  
Axis point 64.08438226 166.31309182 0.00000000  
Rotation angle (degrees) 150.97460024  
Shift along axis 6.99778560  
  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.002425, steps = 40  
shifted from previous position = 0.00383  
rotated from previous position = 0.03 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.76283900 -0.23355037 -0.60293523 150.13083669  
0.61558635 -0.54760845 -0.56672607 215.06379381  
-0.19781334 -0.80347944 0.56150749 152.40611694  
Axis -0.24403556 -0.41758285 0.87525494  
Axis point 64.08962899 166.33321642 0.00000000  
Rotation angle (degrees) 150.98230900  
Shift along axis 6.94999070  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,97.63,-0.057012,-0.26483,-0.96261,267.74,-0.72938,-0.64733,0.22129,290.22

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,146.37,-0.057012,-0.26483,-0.96261,243.07,-0.72938,-0.64733,0.22129,288.14

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.07114, steps = 256  
shifted from previous position = 32.8  
rotated from previous position = 17.2 degrees  
atoms outside contour = 667, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.61786486 -0.42771302 -0.65977616 170.84483335  
0.74291751 -0.59238125 -0.31170184 147.43480786  
-0.25752009 -0.68274888 0.68376705 126.46138422  
Axis -0.28713671 -0.31128798 0.90589862  
Axis point 74.41083400 131.13724478 0.00000000  
Rotation angle (degrees) 139.75062606  
Shift along axis 19.61068624  
  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.07114, steps = 44  
shifted from previous position = 0.00819  
rotated from previous position = 0.0299 degrees  
atoms outside contour = 668, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.61757834 -0.42814601 -0.65976358 170.84349480  
0.74319171 -0.59221736 -0.31135941 147.43320981  
-0.25741616 -0.68261965 0.68393518 126.46145767  
Axis -0.28713942 -0.31118281 0.90593389  
Axis point 74.38724752 131.15424631 0.00000000  
Rotation angle (degrees) 139.72320850  
Shift along axis 19.63113708  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,135.54,-0.057012,-0.26483,-0.96261,249.2,-0.72938,-0.64733,0.22129,288.08

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09051, steps = 116  
shifted from previous position = 3.83  
rotated from previous position = 21.2 degrees  
atoms outside contour = 564, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.40991226 -0.52660519 -0.74475426 163.80520265  
0.91157870 -0.26477063 -0.31451676 152.20219134  
-0.03156290 -0.80782640 0.58857480 133.84436346  
Axis -0.29374238 -0.42467147 0.85636998  
Axis point 56.24713709 161.50683288 0.00000000  
Rotation angle (degrees) 122.89178408  
Shift along axis 1.86783552  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,130.96,-0.057012,-0.26483,-0.96261,248.28,-0.72938,-0.64733,0.22129,290.92

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09352, steps = 144  
shifted from previous position = 6.76  
rotated from previous position = 12.3 degrees  
atoms outside contour = 559, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.58748772 -0.50771050 -0.63014937 154.42227727  
0.80870649 -0.39643595 -0.43454845 157.39716013  
-0.02918906 -0.76489776 0.64349003 128.55096743  
Axis -0.22255776 -0.40486955 0.88687580  
Axis point 52.29608107 147.61368795 0.00000000  
Rotation angle (degrees) 132.08380123  
Shift along axis 15.91554911  
  

> select add #2

2 models selected  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09353, steps = 28  
shifted from previous position = 0.0157  
rotated from previous position = 0.0287 degrees  
atoms outside contour = 559, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.58740844 -0.50794726 -0.63003247 154.43591159  
0.80875721 -0.39670182 -0.43421128 157.40142430  
-0.02937860 -0.76460267 0.64383200 128.53409043  
Axis -0.22256507 -0.40462485 0.88698564  
Axis point 52.29529346 147.59650247 0.00000000  
Rotation angle (degrees) 132.07780349  
Shift along axis 15.94732467  
  

> select subtract #2

Nothing selected  

> vop gaussian #2 sdev 2.52

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc gaussian as #3, grid size
300,300,300, pixel 0.839, shown at step 1, values float32  

> undo

> fitmap #1 inMap #3

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc gaussian (#3) using 1181 atoms  
average map value = 0.09849, steps = 184  
shifted from previous position = 24.9  
rotated from previous position = 31 degrees  
atoms outside contour = 158, contour level = 0.059631  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc gaussian (#3) coordinates:  
Matrix rotation and translation  
-0.66926527 -0.72246083 -0.17359249 131.45171190  
0.72450851 -0.58269810 -0.36817163 149.02241979  
0.16483757 -0.37217372 0.91340862 127.48865917  
Axis -0.00269315 -0.22774179 0.97371784  
Axis point 27.16452203 119.52050911 0.00000000  
Rotation angle (degrees) 132.01131701  
Shift along axis 89.84533015  
  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1136, steps = 88  
shifted from previous position = 1.13  
rotated from previous position = 3.16 degrees  
atoms outside contour = 392, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67026005 -0.72368288 -0.16442187 132.19052098  
0.71189623 -0.56438792 -0.41793545 148.86468144  
0.20965501 -0.39717675 0.89347379 128.99628300  
Axis 0.01399153 -0.25213086 0.96759199  
Axis point 25.84689495 121.28571068 0.00000000  
Rotation angle (degrees) 132.11239292  
Shift along axis 89.13193893  
  

> surface dust #3 size 8.39

> volume #!3 style surface

> hide #!3 models

> show #!2 models

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1136, steps = 40  
shifted from previous position = 0.0112  
rotated from previous position = 0.0437 degrees  
atoms outside contour = 392, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67000254 -0.72376972 -0.16508782 132.20263965  
0.71218538 -0.56391759 -0.41807767 148.86962327  
0.20949603 -0.39768623 0.89328443 128.99562472  
Axis 0.01373949 -0.25238979 0.96752810  
Axis point 25.84617588 121.33134926 0.00000000  
Rotation angle (degrees) 132.09160122  
Shift along axis 89.05011603  
  

> surface dust #2 size 8.39

> volume #2 color #b2b2b274

> volume #2 color #b2b2b277

> volume #2 color #b2b2b291

> volume #2 color #fcfcfc91

> volume #2 color #e3fc1691

> volume #2 color #84fcd391

> volume #2 color #43f2fc91

> volume #2 color #f9ecfc91

> volume #2 color #f9ecfc60

> volume #2 color #f9ecfc61

> select subtract #2

Nothing selected  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1137, steps = 28  
shifted from previous position = 0.0244  
rotated from previous position = 0.061 degrees  
atoms outside contour = 394, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67027982 -0.72374679 -0.16405960 132.19088463  
0.71175774 -0.56438372 -0.41817694 148.85782868  
0.21006165 -0.39706625 0.89342739 129.01250348  
Axis 0.01422931 -0.25217028 0.96757825  
Axis point 25.83113038 121.28108573 0.00000000  
Rotation angle (degrees) 132.11478588  
Shift along axis 89.17315714  
  

> ui mousemode right "rotate selected models"

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1136, steps = 28  
shifted from previous position = 0.0211  
rotated from previous position = 0.0439 degrees  
atoms outside contour = 391, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67020693 -0.72366642 -0.16471062 132.19748221  
0.71186280 -0.56402700 -0.41847927 148.86869645  
0.20993816 -0.39771907 0.89316600 129.00301011  
Axis 0.01399164 -0.25249998 0.96749573  
Axis point 25.83762560 121.32256000 0.00000000  
Rotation angle (degrees) 132.10828932  
Shift along axis 89.07017937  
  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1137, steps = 28  
shifted from previous position = 0.0233  
rotated from previous position = 0.0644 degrees  
atoms outside contour = 393, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67039900 -0.72370060 -0.16377616 132.18712031  
0.71164641 -0.56462996 -0.41803396 148.85951478  
0.21005850 -0.39680027 0.89354629 129.01198454  
Axis 0.01431437 -0.25201498 0.96761746  
Axis point 25.83458743 121.26015063 0.00000000  
Rotation angle (degrees) 132.12430699  
Shift along axis 89.21159713  
  

> hide #!1 models

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
4.1/A | No description available  
4.2/A 4.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1136, steps = 40  
shifted from previous position = 0.0257  
rotated from previous position = 0.0815 degrees  
atoms outside contour = 391, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67011339 -0.72371099 -0.16489527 132.20230126  
0.71192571 -0.56380928 -0.41866560 148.86953214  
0.21002341 -0.39794661 0.89304461 129.00593754  
Axis 0.01396225 -0.25265266 0.96745630  
Axis point 25.83191820 121.34243509 0.00000000  
Rotation angle (degrees) 132.10095856  
Shift along axis 89.04116444  
  

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,114.29,-0.057012,-0.26483,-0.96261,272.88,-0.72938,-0.64733,0.22129,284.92

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,75.044,-0.057012,-0.26483,-0.96261,222.88,-0.72938,-0.64733,0.22129,303.54

> view matrix models
> #2,-0.68173,0.71473,-0.15626,59.667,-0.057012,-0.26483,-0.96261,207.51,-0.72938,-0.64733,0.22129,309.99

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.002615, steps = 72  
shifted from previous position = 1.7  
rotated from previous position = 4.8 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.64446501 -0.72579555 -0.24059442 94.67560782  
0.74107060 -0.51536781 -0.43036077 202.30835440  
0.18835931 -0.45564991 0.87000226 75.61231564  
Axis -0.01654498 -0.28063556 0.95967179  
Axis point -1.94938048 135.18489285 0.00000000  
Rotation angle (degrees) 130.15932384  
Shift along axis 14.22168262  
  

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,10.546,-0.057012,-0.26483,-0.96261,151.47,-0.72938,-0.64733,0.22129,302.74

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,-32.659,-0.057012,-0.26483,-0.96261,108.75,-0.72938,-0.64733,0.22129,245.32

> fitmap #1 inMap #2

Fit molecule 2qe3.pdb (#1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb (#1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.64446501 -0.72579555 -0.24059442 -21.07084872  
0.74107060 -0.51536781 -0.43036077 200.27317162  
0.18835931 -0.45564991 0.87000226 -19.56961912  
Axis -0.01654498 -0.28063556 0.95967179  
Axis point -54.11404488 91.87568121 0.00000000  
Rotation angle (degrees) 130.15932384  
Shift along axis -74.63556746  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.0003961, steps = 96  
shifted from previous position = 2.51  
rotated from previous position = 10.9 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.61759421 0.10433074 -0.77954634 163.74502896  
0.72063624 -0.32197730 -0.61401468 209.92020957  
-0.31505684 -0.94098125 0.12366680 43.57492745  
Axis -0.39010655 -0.55418632 0.73531925  
Axis point 74.34307474 137.20352175 0.00000000  
Rotation angle (degrees) 155.22389819  
Shift along axis -148.17143335  
  

> view matrix models #4.2,1,0,0,1.4158,0,1,0,1.3122,0,0,1,1.8238

> view matrix models #4.3,1,0,0,0.67167,0,1,0,2.5586,0,0,1,2.1424

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.0003961, steps = 48  
shifted from previous position = 0.0164  
rotated from previous position = 0.0738 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.61773092 0.10392111 -0.77949273 163.74525375  
0.72025463 -0.32311715 -0.61386365 209.91246049  
-0.31566086 -0.94063580 0.12474979 43.56153472  
Axis -0.39006983 -0.55367882 0.73572093  
Axis point 74.33283794 137.16134235 0.00000000  
Rotation angle (degrees) 155.23713389  
Shift along axis -148.04703373  
  

> view matrix models #4.3,1,0,0,-4.0071,0,1,0,10.32,0,0,1,4.0961

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.0003958, steps = 40  
shifted from previous position = 0.0172  
rotated from previous position = 0.0436 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.61736146 0.10431037 -0.77973340 163.75663339  
0.72058487 -0.32269337 -0.61369898 209.92227941  
-0.31562997 -0.94073819 0.12405398 43.56246036  
Axis -0.39029024 -0.55386337 0.73546509  
Axis point 74.34785909 137.17894299 0.00000000  
Rotation angle (degrees) 155.23047149  
Shift along axis -148.14220726  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,-28.802,-0.057012,-0.26483,-0.96261,112.85,-0.72938,-0.64733,0.22129,250.64

Cell requested for row 3 is out of bounds for table with 7 rows! Resizing
table model.  

> close #4

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
4.1/A | No description available  
4.2/A 4.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,-33.818,-0.057012,-0.26483,-0.96261,105.37,-0.72938,-0.64733,0.22129,242.31

> view matrix models #4.2,1,0,0,-0.0042073,0,1,0,2.2735,0,0,1,1.4969

Cell requested for row 3 is out of bounds for table with 7 rows! Resizing
table model.  

> close #4

> hide #!2 models

> show #!2 models

> color #2 #e6fce961 models

> color #2 #e6fce9ff models

> color #2 #e6fce9e6 models

> color #2 #e6fce9d9 models

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
4.1/A | No description available  
4.2/A 4.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

Cell requested for row 3 is out of bounds for table with 7 rows! Resizing
table model.  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,-20.005,-0.057012,-0.26483,-0.96261,113.8,-0.72938,-0.64733,0.22129,248.83

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,5.6962,-0.057012,-0.26483,-0.96261,146.08,-0.72938,-0.64733,0.22129,256.38

> ui mousemode right "rotate selected models"

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> view matrix models
> #4,0.9558,0.28283,-0.08032,-0.51751,-0.26874,0.95121,0.15156,0.50672,0.11927,-0.12328,0.98518,0.074502

> ui mousemode right "move picked models"

> view matrix models
> #4.1,1,5.0132e-16,1.6121e-18,-3.7514,-1.3309e-17,1,-1.8858e-16,-12.912,-1.4197e-17,4.5529e-16,1,6.5415

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.6168,0.72999,0.29441,-0.82088,-0.53875,0.11884,0.83404,-1.6003,0.57385,-0.67305,0.46658,1.9923

> ui mousemode right "move picked models"

> view matrix models
> #4.1,1,7.1725e-16,2.7782e-15,15.573,8.0968e-16,1,-6.5898e-16,-54.345,-3.5836e-16,5.7636e-16,1,-20.008

Cell requested for row 3 is out of bounds for table with 7 rows! Resizing
table model.  

> close #4

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
4.1/A | No description available  
4.2/A 4.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,24.605,-0.057012,-0.26483,-0.96261,143.98,-0.72938,-0.64733,0.22129,247.72

> view matrix models
> #2,-0.68173,0.71473,-0.15626,26.311,-0.057012,-0.26483,-0.96261,145.91,-0.72938,-0.64733,0.22129,246.17

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.0007653, steps = 156  
shifted from previous position = 4.44  
rotated from previous position = 9.04 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67857973 0.03222811 -0.73381939 206.19721057  
0.66819032 -0.38780750 -0.63492286 181.09044911  
-0.30504302 -0.92117680 0.24162380 84.28784576  
Axis -0.34965263 -0.52374052 0.77681330  
Axis point 104.44022928 142.47984915 0.00000000  
Rotation angle (degrees) 155.83659015  
Shift along axis -101.46588492  
  

> ui mousemode right rotate

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,58.07,-0.057012,-0.26483,-0.96261,181.91,-0.72938,-0.64733,0.22129,218.31

> ui mousemode right select

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = -0.00165, steps = 56  
shifted from previous position = 1.95  
rotated from previous position = 4.72 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.70193645 -0.03544274 -0.71135717 210.66923262  
0.67395300 -0.35610296 -0.64728512 149.15102468  
-0.23037484 -0.93377433 0.27384839 132.42976349  
Axis -0.31702024 -0.53224041 0.78499574  
Axis point 112.80600430 149.47911620 0.00000000  
Rotation angle (degrees) 153.13776081  
Shift along axis -42.21381226  
  

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,57.836,-0.057012,-0.26483,-0.96261,181.76,-0.72938,-0.64733,0.22129,218.27

> view matrix models
> #2,-0.68173,0.71473,-0.15626,35.797,-0.057012,-0.26483,-0.96261,159.38,-0.72938,-0.64733,0.22129,179.73

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08197, steps = 296  
shifted from previous position = 12.2  
rotated from previous position = 34.4 degrees  
atoms outside contour = 531, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.94424420 0.17366912 -0.27971759 154.61945585  
0.14475641 -0.54407387 -0.82645581 138.50078865  
-0.29571689 -0.82086702 0.48859888 122.35376812  
Axis 0.16676229 0.47739809 -0.86271745  
Axis point 89.83937999 102.34166156 0.00000000  
Rotation angle (degrees) 179.03986279  
Shift along axis -13.65202332  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08197, steps = 48  
shifted from previous position = 0.0202  
rotated from previous position = 0.0293 degrees  
atoms outside contour = 531, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.94427426 0.17375129 -0.27956503 154.60301980  
0.14473302 -0.54364919 -0.82673933 138.51092365  
-0.29563233 -0.82113096 0.48820638 122.36043566  
Axis 0.16671566 0.47762002 -0.86260362  
Axis point 89.83280329 102.36590861 0.00000000  
Rotation angle (degrees) 179.03622989  
Shift along axis -13.61821888  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,34.788,-0.057012,-0.26483,-0.96261,157.77,-0.72938,-0.64733,0.22129,175.51

> view matrix models
> #2,-0.68173,0.71473,-0.15626,35.178,-0.057012,-0.26483,-0.96261,156.41,-0.72938,-0.64733,0.22129,168.98

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08326, steps = 136  
shifted from previous position = 3.04  
rotated from previous position = 19.1 degrees  
atoms outside contour = 559, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99689003 0.05733090 -0.05406875 147.33044713  
-0.00080065 -0.69343913 -0.72051477 133.29744739  
-0.07880115 -0.71823070 0.69132846 123.54404422  
Axis 0.03613152 0.39124019 -0.91957905  
Axis point 77.42680438 91.64622894 0.00000000  
Rotation angle (degrees) 178.18871071  
Shift along axis -56.13392252  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08326, steps = 28  
shifted from previous position = 0.0239  
rotated from previous position = 0.102 degrees  
atoms outside contour = 562, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99684633 0.05855630 -0.05355884 147.33494002  
-0.00210885 -0.69422676 -0.71975326 133.28917187  
-0.07932807 -0.71737045 0.69216089 123.54201902  
Axis 0.03612813 0.39071245 -0.91980353  
Axis point 77.48571320 91.54440732 0.00000000  
Rotation angle (degrees) 178.11020097  
Shift along axis -56.23371077  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08325, steps = 28  
shifted from previous position = 0.0174  
rotated from previous position = 0.0498 degrees  
atoms outside contour = 560, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99686076 0.05805390 -0.05383659 147.33063025  
-0.00151013 -0.69378983 -0.72017595 133.30367473  
-0.07916030 -0.71783384 0.69169952 123.54457370  
Axis 0.03616257 0.39100253 -0.91967891  
Axis point 77.46139891 91.59924470 0.00000000  
Rotation angle (degrees) 178.14426333  
Shift along axis -56.17140980  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08326, steps = 40  
shifted from previous position = 0.0117  
rotated from previous position = 0.0326 degrees  
atoms outside contour = 560, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99687759 0.05760107 -0.05401093 147.33284555  
-0.00104839 -0.69360276 -0.72035694 133.29583135  
-0.07895547 -0.71805107 0.69149743 123.54422768  
Axis 0.03615613 0.39113078 -0.91962462  
Axis point 77.44129304 91.62545521 0.00000000  
Rotation angle (degrees) 178.17265853  
Shift along axis -56.15122599  
  

> view matrix models
> #2,-0.68173,0.71473,-0.15626,32.162,-0.057012,-0.26483,-0.96261,155.2,-0.72938,-0.64733,0.22129,171.33

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08892, steps = 80  
shifted from previous position = 2.67  
rotated from previous position = 4.06 degrees  
atoms outside contour = 504, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99393207 0.07065879 -0.08429937 144.90815060  
0.00477895 -0.73792451 -0.67486635 137.52977967  
-0.10989181 -0.67117416 0.73310916 122.17829305  
Axis 0.05216968 0.36161524 -0.93086666  
Axis point 77.37922488 91.09071676 0.00000000  
Rotation angle (degrees) 177.97209142  
Shift along axis -56.43902472  
  

> ui mousemode right "translate selected models"

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08892, steps = 44  
shifted from previous position = 0.0126  
rotated from previous position = 0.102 degrees  
atoms outside contour = 502, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99377759 0.07220840 -0.08480591 144.89645907  
0.00390611 -0.73833046 -0.67442782 137.51416495  
-0.11131414 -0.67056251 0.73345421 122.16471938  
Axis 0.05268395 0.36130623 -0.93095768  
Axis point 77.46092569 91.00608865 0.00000000  
Rotation angle (degrees) 177.89769646  
Shift along axis -56.41174156  
  

> ui mousemode right select

Drag select of 2 cryosparc_P1050_J339_004_volume_map_sharp.mrc  
Drag select of 2 cryosparc_P1050_J339_004_volume_map_sharp.mrc , 1 residues  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08892, steps = 40  
shifted from previous position = 0.000604  
rotated from previous position = 0.00427 degrees  
atoms outside contour = 502, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99378541 0.07216101 -0.08475469 144.89648671  
0.00390372 -0.73834737 -0.67440932 137.51424321  
-0.11124446 -0.67054900 0.73347714 122.16560047  
Axis 0.05265110 0.36129507 -0.93096387  
Axis point 77.45776196 91.00640277 0.00000000  
Rotation angle (degrees) 177.89909629  
Shift along axis -56.41958319  
  

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.68173,0.71473,-0.15626,28.422,-0.057012,-0.26483,-0.96261,165.48,-0.72938,-0.64733,0.22129,171.14

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08985, steps = 80  
shifted from previous position = 2.92  
rotated from previous position = 0.278 degrees  
atoms outside contour = 512, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99418872 0.06990082 -0.08186976 140.28683479  
0.00396543 -0.73621377 -0.67673745 142.75122108  
-0.10757815 -0.67312939 0.73165824 130.10611330  
Axis 0.05091676 0.36279544 -0.93047673  
Axis point 75.27719061 95.37396260 0.00000000  
Rotation angle (degrees) 177.96952977  
Shift along axis -62.12826809  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.58768,0.80293,-0.09969,2.0379,-0.099509,-0.194,-0.97594,164.16,-0.80295,-0.56362,0.19391,173.5,#4.1,0.59817,-0.5651,-0.5682,21.243,0.20315,0.79281,-0.57462,-4.47,0.77519,0.22829,0.58904,5.6278

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08985, steps = 48  
shifted from previous position = 0.00522  
rotated from previous position = 0.00721 degrees  
atoms outside contour = 513, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99419202 0.06992030 -0.08181308 140.28742568  
0.00390112 -0.73628455 -0.67666080 142.74787706  
-0.10755004 -0.67304993 0.73173546 130.10130183  
Axis 0.05089288 0.36274570 -0.93049743  
Axis point 75.27750984 95.36563880 0.00000000  
Rotation angle (degrees) 177.96699365  
Shift along axis -62.13811724  
  

> ui mousemode right select

Drag select of 2 cryosparc_P1050_J339_004_volume_map_sharp.mrc  

> ui mousemode right "contour level"

> select subtract #2

Nothing selected  

> volume #2 level 0.02263

> volume #2 level 0.03141

> volume #2 level -0.00853

> volume #2 level 0.02258

> volume #2 level -0.03093

> volume #2 level -0.1206

> volume #2 level 0.02917

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08985, steps = 48  
shifted from previous position = 0.000787  
rotated from previous position = 0.00123 degrees  
atoms outside contour = 371, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.99418980 0.06992963 -0.08183214 140.28782645  
0.00390731 -0.73628386 -0.67666152 142.74726215  
-0.10757038 -0.67304972 0.73173267 130.10102085  
Axis 0.05090351 0.36274614 -0.93049668  
Axis point 75.27851473 95.36525127 0.00000000  
Rotation angle (degrees) 177.96689538  
Shift along axis -62.13640612  
  

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08877, steps = 76  
shifted from previous position = 2.52  
rotated from previous position = 4.18 degrees  
atoms outside contour = 341, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.57951746 -0.13007557 -0.80451219 156.11606151  
0.81442357 -0.12824184 -0.56592250 125.29225348  
-0.02955943 -0.98317566 0.18025499 126.56814061  
Axis -0.32319671 -0.60026431 0.73159186  
Axis point 79.64080336 150.94617807 0.00000000  
Rotation angle (degrees) 139.79610551  
Shift along axis -33.06844444  
  

> fitmap #4.2 inMap #2

Fit molecule 2qe3.pdb1 (#4.2) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09354, steps = 64  
shifted from previous position = 2.36  
rotated from previous position = 8.31 degrees  
atoms outside contour = 291, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.2) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.58810759 0.04148338 -0.80771814 159.02069151  
0.79371151 -0.16229441 -0.58624446 128.60375617  
-0.15540755 -0.98587000 0.06252074 126.14814265  
Axis -0.37248162 -0.60800345 0.70113425  
Axis point 92.51618257 148.20402574 0.00000000  
Rotation angle (degrees) 147.55861057  
Shift along axis -48.97702895  
  

> ui mousemode right "contour level"

> select add #4.2

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 2 models selected  

> select add #4.1

2362 atoms, 2298 bonds, 4 pseudobonds, 400 residues, 5 models selected  

> select add #4.3

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 7 models selected  

> ui mousemode right distance

[Repeated 2 time(s)]

> ui mousemode right label

[Repeated 1 time(s)]

> ui mousemode right "move label"

[Repeated 1 time(s)]

> ui mousemode right "color key"

> ui mousemode right "move label"

> ui mousemode right "color key"

> key delete

> ui mousemode right "move label"

> ui mousemode right "translate selected atoms"

> fitmap #4.2 inMap #2

Fit molecule 2qe3.pdb1 (#4.2) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09182, steps = 156  
shifted from previous position = 4.42  
rotated from previous position = 11.8 degrees  
atoms outside contour = 307, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.2) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.48604271 0.14803431 -0.86130617 156.28941470  
0.80838877 -0.29832447 -0.50745454 123.66752917  
-0.33206939 -0.94291482 0.02532916 127.33476305  
Axis -0.45754723 -0.55608016 0.69384825  
Axis point 102.83454416 137.03952988 0.00000000  
Rotation angle (degrees) 151.58439629  
Shift along axis -51.92784552  
  

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09289, steps = 144  
shifted from previous position = 2.43  
rotated from previous position = 25.1 degrees  
atoms outside contour = 339, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.41718379 -0.42876798 -0.80132123 157.01401321  
0.83496202 0.16735203 -0.52424396 124.24024653  
0.35888176 -0.88777887 0.28818842 119.98650333  
Axis -0.20730342 -0.66159821 0.72063382  
Axis point 52.41024371 179.29616805 0.00000000  
Rotation angle (degrees) 118.73908025  
Shift along axis -28.28033496  
  

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.58768,0.80293,-0.09969,4.5397,-0.099509,-0.194,-0.97594,163.38,-0.80295,-0.56362,0.19391,174.71

> view matrix models
> #2,-0.58768,0.80293,-0.09969,3.1562,-0.099509,-0.194,-0.97594,163.18,-0.80295,-0.56362,0.19391,174.54

> ui mousemode right "rotate selected models"

> view matrix models
> #4.1,0.55744,-0.50814,-0.65655,20.846,0.13498,0.83577,-0.53223,-4.3637,0.81917,0.20807,0.53448,5.4551,#4.2,0.98974,-0.13709,0.04024,-2.8385,0.1307,0.98253,0.1325,2.654,-0.057701,-0.12588,0.99037,1.2677,#4.3,0.83757,0.54327,-0.057836,-1.2992,-0.54608,0.82921,-0.11921,9.5868,-0.016802,0.13143,0.99118,-0.83394

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.08367, steps = 72  
shifted from previous position = 3.65  
rotated from previous position = 13.1 degrees  
atoms outside contour = 327, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.39690183 -0.55158737 -0.73363500 159.73072206  
0.87325802 0.01920650 -0.48687940 126.54602430  
0.28264709 -0.83389597 0.47405500 123.82602637  
Axis -0.19449224 -0.56959522 0.79858253  
Axis point 47.19188582 168.56720337 0.00000000  
Rotation angle (degrees) 116.86052397  
Shift along axis -4.26109439  
  

> view matrix models
> #4.1,0.72068,-0.31857,-0.61574,20.032,0.094574,0.92504,-0.36791,-4.1094,0.68679,0.20691,0.69678,6.1563,#4.2,0.96745,-0.0012547,0.25307,-2.5936,-0.049895,0.97941,0.1956,6.6362,-0.24811,-0.20186,0.94747,5.58,#4.3,0.78957,0.59916,0.13259,-1.8201,-0.56634,0.79468,-0.21852,5.4689,-0.2363,0.097442,0.96678,3.1653

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09289, steps = 116  
shifted from previous position = 3.98  
rotated from previous position = 12.6 degrees  
atoms outside contour = 336, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.41692349 -0.42841410 -0.80164591 160.70533095  
0.83522828 0.16734562 -0.52382169 120.74202991  
0.35856452 -0.88795090 0.28805325 120.75658019  
Axis -0.20763461 -0.66157790 0.72055711  
Axis point 55.26982373 179.60349317 0.00000000  
Rotation angle (degrees) 118.73520168  
Shift along axis -26.23623502  
  

> view matrix models
> #4.1,0.80488,-0.19509,-0.56045,18.968,0.036895,0.95904,-0.28086,-4.2759,0.59229,0.20538,0.77911,6.3351,#4.2,0.91983,0.073902,0.38528,-2.3469,-0.15911,0.96797,0.19419,8.7871,-0.35859,-0.23993,0.90213,8.0036,#4.3,0.81271,0.56737,0.13264,-6.7316,-0.56279,0.82333,-0.073507,8.3336,-0.15091,-0.014909,0.98843,3.8026

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09513, steps = 96  
shifted from previous position = 2.8  
rotated from previous position = 16.2 degrees  
atoms outside contour = 315, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.35783256 -0.13992673 -0.92324231 159.65979439  
0.88387374 0.26816406 -0.38321697 119.26960714  
0.30120270 -0.95315715 0.02771972 122.42930855  
Axis -0.33629239 -0.72248203 0.60409200  
Axis point -10.07501688 0.00000000 163.74572518  
Rotation angle (degrees) 122.07131397  
Shift along axis -65.90395504  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4.1,0.80488,-0.19509,-0.56045,17.533,0.036895,0.95904,-0.28086,-4.4152,0.59229,0.20538,0.77911,6.1025,#4.2,0.91983,0.073902,0.38528,-3.782,-0.15911,0.96797,0.19419,8.6478,-0.35859,-0.23993,0.90213,7.771,#4.3,0.88995,0.39257,0.23211,-8.5471,-0.42982,0.89212,0.13916,4.5275,-0.15244,-0.22361,0.96268,2.6259

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09515, steps = 52  
shifted from previous position = 1.47  
rotated from previous position = 0.0299 degrees  
atoms outside contour = 316, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.35794934 -0.14035189 -0.92313251 159.66884724  
0.88370390 0.26837129 -0.38346352 119.27921807  
0.30156209 -0.95303631 0.02796618 122.41040184  
Axis -0.33603376 -0.72253931 0.60416741  
Axis point -10.04833343 0.00000000 163.76360772  
Rotation angle (degrees) 122.05992443  
Shift along axis -65.88167117  
  

> select subtract #4.1

2362 atoms, 2298 bonds, 4 pseudobonds, 400 residues, 4 models selected  

> select subtract #4.2

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 2 models selected  

> select subtract #4.3

Nothing selected  

> select add #2

2 models selected  

> color #2 white models

> color #2 #ffffff58 models

> color #2 #ffffff9e models

> view matrix models
> #2,-0.58768,0.80293,-0.09969,2.3463,-0.099509,-0.194,-0.97594,163.62,-0.80295,-0.56362,0.19391,174

> fitmap #4.3 inMap #2

Fit molecule 2qe3.pdb1 (#4.3) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09514, steps = 68  
shifted from previous position = 1.06  
rotated from previous position = 0.0392 degrees  
atoms outside contour = 315, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.3) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.35805705 -0.14085122 -0.92301467 159.66673092  
0.88373819 0.26791387 -0.38370428 119.27099386  
0.30133365 -0.95309134 0.02854715 122.43058240  
Axis -0.33592222 -0.72233079 0.60447870  
Axis point -10.05741404 0.00000000 163.84097781  
Rotation angle (degrees) 122.05938902  
Shift along axis -65.78203390  
  

> fitmap #4.2 inMap #2

Fit molecule 2qe3.pdb1 (#4.2) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09043, steps = 88  
shifted from previous position = 2.78  
rotated from previous position = 11 degrees  
atoms outside contour = 280, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.2) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.06385786 0.06600748 -0.99577366 147.73394560  
0.99545264 0.07488654 -0.05887322 117.75852903  
0.07068397 -0.99500504 -0.07048941 118.13033467  
Axis -0.55185642 -0.62868442 0.54791459  
Axis point -51.85507635 0.00000000 153.42060436  
Rotation angle (degrees) 121.98723845  
Shift along axis -90.83554530  
  

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1026, steps = 132  
shifted from previous position = 4.41  
rotated from previous position = 7.33 degrees  
atoms outside contour = 280, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.91953430 -0.24806218 -0.30483081 139.47710359  
0.38280129 -0.38968629 -0.83762031 136.30023626  
0.08899353 -0.88691023 0.45328843 129.37401203  
Axis -0.06613173 -0.52838970 0.84642243  
Axis point 57.52431776 124.67111294 -0.00000000  
Rotation angle (degrees) 158.11995137  
Shift along axis 28.26156176  
  

> select subtract #2

Nothing selected  

> ui mousemode right "rotate selected models"

> select add #4.1

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 3 models selected  

> view matrix models
> #4.1,0.70276,-0.25431,-0.66442,17.821,0.041356,0.94695,-0.31871,-3.3119,0.71022,0.1965,0.676,9.7816

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1057, steps = 164  
shifted from previous position = 1.14  
rotated from previous position = 20.2 degrees  
atoms outside contour = 281, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.92540612 -0.32223562 -0.19946860 140.76980931  
0.28197196 -0.23377960 -0.93050466 136.59391372  
0.25321005 -0.91733926 0.30720248 128.55448360  
Axis 0.01743559 -0.59950439 0.80018153  
Axis point 50.53245695 133.64675573 0.00000000  
Rotation angle (degrees) 157.81836101  
Shift along axis 23.43267647  
  

> view matrix models
> #4.1,0.72472,0.053785,-0.68694,16.648,-0.15614,0.98383,-0.0877,-2.5478,0.67112,0.17082,0.7214,8.8976

> ui mousemode right "translate selected models"

> view matrix models
> #4.1,0.72472,0.053785,-0.68694,24.449,-0.15614,0.98383,-0.0877,-3.603,0.67112,0.17082,0.7214,8.1172

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1018, steps = 112  
shifted from previous position = 5.96  
rotated from previous position = 14.1 degrees  
atoms outside contour = 260, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.93721466 -0.26428994 -0.22755110 135.82607427  
0.32752964 -0.44287559 -0.83461701 139.94009666  
0.11980405 -0.85674503 0.50163229 125.59931742  
Axis -0.03222922 -0.50591895 0.86197871  
Axis point 54.17241695 120.88569975 0.00000000  
Rotation angle (degrees) 159.92247479  
Shift along axis 33.08802303  
  

> view matrix models
> #4.1,0.80182,-0.11487,-0.58642,32.197,-0.087202,0.94835,-0.305,-4.5326,0.59117,0.29569,0.75039,11.52

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1099, steps = 228  
shifted from previous position = 11.2  
rotated from previous position = 27.2 degrees  
atoms outside contour = 259, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.83132931 -0.55499186 -0.02959094 131.80526161  
0.44457126 -0.63208912 -0.63468081 138.59302866  
0.33353857 -0.54078404 0.77220764 131.74618052  
Axis 0.08794986 -0.34013088 0.93625627  
Axis point 33.69447565 112.39358311 0.00000000  
Rotation angle (degrees) 147.73685679  
Shift along axis 87.80067430  
  

> view matrix models
> #4.1,0.81226,-0.12746,-0.5692,36.871,-0.32904,0.70563,-0.62755,-2.3324,0.48163,0.69703,0.53122,11.592

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1026, steps = 152  
shifted from previous position = 11.1  
rotated from previous position = 12.9 degrees  
atoms outside contour = 239, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.85806988 -0.51322934 0.01765584 130.58787010  
0.44989594 -0.76787083 -0.45603512 142.11276076  
0.24760801 -0.38336671 0.88978663 127.04570501  
Axis 0.07319107 -0.23160606 0.97005242  
Axis point 37.86662773 103.10860820 0.00000000  
Rotation angle (degrees) 150.23594228  
Shift along axis 99.88468262  
  

> view matrix models
> #4.1,0.84082,-0.27672,-0.46524,37.238,-0.24355,0.57418,-0.78166,-2.0399,0.48343,0.77055,0.41539,12.501

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1026, steps = 124  
shifted from previous position = 10.3  
rotated from previous position = 0.134 degrees  
atoms outside contour = 237, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.85798343 -0.51335058 0.01831966 130.60034113  
0.44919080 -0.76709607 -0.45802974 142.11543806  
0.24918277 -0.38475291 0.88874808 127.05450350  
Axis 0.07382693 -0.23259622 0.96976728  
Axis point 37.81975816 103.17307592 0.00000000  
Rotation angle (degrees) 150.24617809  
Shift along axis 99.79960877  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4.1,0.84574,-0.38807,-0.36623,27.44,0.23106,0.88501,-0.4042,-3.1864,0.48097,0.25722,0.83815,15.574

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1089, steps = 236  
shifted from previous position = 6.55  
rotated from previous position = 17.6 degrees  
atoms outside contour = 233, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.85713544 -0.32665380 -0.39826641 136.70201527  
0.50260137 -0.69962191 -0.50785928 141.35079860  
-0.11274174 -0.63547343 0.76384738 128.66787701  
Axis -0.14399021 -0.32216456 0.93566918  
Axis point 58.38231091 110.88771771 0.00000000  
Rotation angle (degrees) 153.69593398  
Shift along axis 55.16859679  
  

> view matrix models
> #4.1,0.9679,-0.22397,-0.11402,22.356,0.19191,0.95159,-0.24011,-3.5303,0.16227,0.21053,0.96403,11.384

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09959, steps = 120  
shifted from previous position = 3.86  
rotated from previous position = 12.9 degrees  
atoms outside contour = 278, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.75724682 -0.14388187 -0.63708340 132.27553927  
0.64749471 -0.29322569 -0.70339840 137.31059777  
-0.08560295 -0.94515433 0.31520697 130.22554933  
Axis -0.24311467 -0.55457993 0.79582433  
Axis point 63.49538382 135.96465708 0.00000000  
Rotation angle (degrees) 150.18470658  
Shift along axis -4.67116439  
  

> view matrix models
> #4.1,0.99916,0.036697,0.018371,21.675,-0.038827,0.99028,0.13356,-2.8571,-0.013291,-0.13416,0.99087,17.162

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.106, steps = 96  
shifted from previous position = 4.58  
rotated from previous position = 18.6 degrees  
atoms outside contour = 258, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.79481729 -0.08466558 -0.60091365 131.66352216  
0.60586195 -0.05426084 -0.79371725 131.34616130  
0.03459445 -0.99493090 0.09442311 130.40983324  
Axis -0.20964468 -0.66213643 0.71946122  
Axis point 63.93862692 148.30003299 0.00000000  
Rotation angle (degrees) 151.32164428  
Shift along axis -20.74681737  
  

> view matrix models
> #4.1,0.99103,0.13306,-0.012798,17.411,-0.11599,0.90356,0.41247,-1.6173,0.066446,-0.40728,0.91088,21.253

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1004, steps = 92  
shifted from previous position = 2.05  
rotated from previous position = 8.27 degrees  
atoms outside contour = 259, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.55757825 0.07469319 -0.82675717 131.40408103  
0.82977231 0.07915223 -0.55246072 129.00366265  
0.02417462 -0.99406029 -0.10611190 131.14133677  
Axis -0.36186482 -0.69728844 0.61874283  
Axis point -8.29947465 0.00000000 149.90650127  
Rotation angle (degrees) 142.39805805  
Shift along axis -56.36051451  
  

> view matrix models
> #4.1,0.98948,0.10837,-0.095812,15.564,-0.10843,0.99409,0.004592,-2.8839,0.095744,0.0058451,0.99539,19.931

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09824, steps = 80  
shifted from previous position = 2.32  
rotated from previous position = 4.6 degrees  
atoms outside contour = 280, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.64832637 -0.08854684 -0.75619599 130.71406926  
0.76111965 -0.10046258 -0.64078401 127.90701389  
-0.01923000 -0.99099280 0.13252728 131.71885742  
Axis -0.29728947 -0.62560459 0.72127516  
Axis point 66.99154304 148.99203975 0.00000000  
Rotation angle (degrees) 143.91370902  
Shift along axis -23.87359125  
  

> view matrix models
> #4.1,0.86794,-0.0143,-0.49645,15.478,0.22994,0.89757,0.37615,-3.1843,0.44022,-0.44064,0.78233,22.368

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.0977, steps = 184  
shifted from previous position = 3.71  
rotated from previous position = 16.4 degrees  
atoms outside contour = 248, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.81766463 0.08748719 -0.56900839 131.46214047  
0.56787551 -0.03977818 -0.82215273 131.42529729  
-0.09456195 -0.99537113 -0.01715663 134.95048903  
Axis -0.24850257 -0.68065028 0.68917463  
Axis point 75.49453964 148.56727834 0.00000000  
Rotation angle (degrees) 159.60291377  
Shift along axis -29.11889232  
  

> view matrix models
> #4.1,0.96327,-0.042289,-0.26517,17.327,0.19531,0.78803,0.58383,-6.2727,0.18428,-0.61418,0.76735,22.025

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1002, steps = 164  
shifted from previous position = 3.68  
rotated from previous position = 25.3 degrees  
atoms outside contour = 222, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.77144643 0.02028238 -0.63597093 133.19315285  
0.62988503 0.16584800 -0.75877487 127.24206942  
0.09008475 -0.98594273 -0.14071842 136.02931584  
Axis -0.23302302 -0.74476946 0.62531490  
Axis point 18.47587229 0.00000000 143.04164671  
Rotation angle (degrees) 150.82776920  
Shift along axis -40.74192025  
  

> view matrix models
> #4.1,0.99031,0.083697,0.11079,13.205,-0.13833,0.52566,0.83937,-5.458,0.012013,-0.84657,0.53215,24.018

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09517, steps = 116  
shifted from previous position = 3.54  
rotated from previous position = 23.8 degrees  
atoms outside contour = 269, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.50704973 0.26083515 -0.82150204 129.17534997  
0.80241348 0.49084254 -0.33942040 123.97241447  
0.31469537 -0.83128733 -0.45817922 134.16756042  
Axis -0.36397812 -0.84077820 0.40076421  
Axis point -2.31630736 0.00000000 118.30193569  
Rotation angle (degrees) 137.49286526  
Shift along axis -97.48074815  
  

> view matrix models
> #4.1,0.91601,0.27323,-0.29373,12.351,-0.31398,0.94404,-0.10102,-5.8246,0.24969,0.18476,0.95054,23.202

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1009, steps = 68  
shifted from previous position = 2.64  
rotated from previous position = 8.76 degrees  
atoms outside contour = 246, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.67790555 -0.44504377 -0.58513256 133.85294402  
0.62429112 0.07180279 -0.77788493 125.36439461  
0.38820699 -0.89262557 0.22916136 136.73177318  
Axis -0.07910266 -0.67102416 0.73720373  
Axis point 36.54955065 164.04648901 0.00000000  
Rotation angle (degrees) 133.50917292  
Shift along axis 6.08851219  
  

> view matrix models
> #4.1,0.75649,-0.045264,-0.65244,12.217,-0.45881,0.67419,-0.57876,-7.0666,0.46606,0.73717,0.48925,19.556

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1053, steps = 172  
shifted from previous position = 6.5  
rotated from previous position = 17.7 degrees  
atoms outside contour = 266, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.72184277 -0.67273766 -0.16237936 130.18567951  
0.48285926 -0.32149655 -0.81454706 129.89048121  
0.49577207 -0.66638128 0.55690757 132.91902911  
Axis 0.11072820 -0.49185395 0.86360810  
Axis point 20.56994105 130.11747789 0.00000000  
Rotation angle (degrees) 138.00608439  
Shift along axis 65.31803020  
  

> view matrix models
> #4.1,0.34488,-0.27358,-0.89789,19.522,-0.66152,0.6078,-0.43928,-3.2617,0.66592,0.74547,0.028645,20.228

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09787, steps = 132  
shifted from previous position = 4.44  
rotated from previous position = 23.5 degrees  
atoms outside contour = 286, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.82970299 -0.49847569 0.25122687 131.61007653  
0.29293023 -0.77192725 -0.56419873 136.38634711  
0.47516822 -0.39452543 0.78648894 133.59039714  
Axis 0.20204041 -0.26666070 0.94237558  
Axis point 31.93953734 99.72499996 0.00000000  
Rotation angle (degrees) 155.17176235  
Shift along axis 116.11400415  
  

> view matrix models
> #4.1,0.41474,-0.6161,-0.66964,23.069,-0.0072681,0.73365,-0.67949,-8.1709,0.90991,0.28668,0.2998,17.819

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1099, steps = 196  
shifted from previous position = 3.89  
rotated from previous position = 39.6 degrees  
atoms outside contour = 259, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.83140769 -0.55487382 -0.02960239 131.79881923  
0.44446867 -0.63211723 -0.63472468 138.58494800  
0.33347992 -0.54087232 0.77217115 131.73622240  
Axis 0.08792693 -0.34015884 0.93624827  
Axis point 33.70125100 112.38478197 0.00000000  
Rotation angle (degrees) 147.74453124  
Shift along axis 87.78557925  
  

> view matrix models
> #4.1,0.37432,-0.67007,-0.64101,26.092,0.23709,0.73745,-0.63243,-6.8861,0.89648,0.08475,0.43491,16.096

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.09555, steps = 116  
shifted from previous position = 7.1  
rotated from previous position = 17.5 degrees  
atoms outside contour = 295, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.98231024 0.08906084 -0.16472634 135.33288064  
0.03334282 -0.78242134 -0.62185619 136.73251008  
-0.18426844 -0.61634814 0.76561095 131.46013609  
Axis 0.09288131 0.32953512 -0.93956355  
Axis point 75.41457363 90.30365634 0.00000000  
Rotation angle (degrees) 178.30087310  
Shift along axis -65.88709292  
  

> view matrix models
> #4.1,0.1753,-0.94512,-0.27571,22.106,0.23401,0.31202,-0.92081,-3.4216,0.9563,0.0969,0.27586,13.262

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1011, steps = 116  
shifted from previous position = 4.89  
rotated from previous position = 16.1 degrees  
atoms outside contour = 283, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.98186956 0.18168298 0.05406909 140.13504128  
-0.18907007 -0.95910715 -0.21063237 140.21690799  
0.01358973 -0.21703636 0.97606892 130.56393541  
Axis -0.01716835 0.10852047 -0.99394595  
Axis point 76.17645751 70.69909264 0.00000000  
Rotation angle (degrees) 169.25107289  
Shift along axis -116.96297738  
  

> view matrix models
> #4.1,0.037501,-0.92795,-0.37081,20.99,0.74378,0.27373,-0.60981,-6.4223,0.66737,-0.25293,0.70046,10.705

> fitmap #4.1 inMap #2

Fit molecule 2qe3.pdb1 (#4.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) using 1181 atoms  
average map value = 0.1044, steps = 80  
shifted from previous position = 3.83  
rotated from previous position = 15.3 degrees  
atoms outside contour = 280, contour level = 0.029167  
  
Position of 2qe3.pdb1 (#4.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
-0.53056206 0.67098345 -0.51796247 137.17314597  
-0.45957811 -0.74115789 -0.48935973 136.78403041  
-0.71224425 -0.02159149 0.70159956 130.90012902  
Axis 0.37758599 0.15682570 -0.91259768  
Axis point 123.04937855 50.24280363 0.00000000  
Rotation angle (degrees) 141.72624572  
Shift along axis -46.21324477  
  

> close #4

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
4.1/A | No description available  
4.2/A 4.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> color sel bychain

[Repeated 3 time(s)]

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
[Repeated 2 time(s)]Coulombic values for 2qe3.pdb1_A SES surface #4.1.2:
minimum, -16.63, mean -2.02, maximum 9.84  
Coulombic values for 2qe3.pdb1_A SES surface #4.2.2: minimum, -16.16, mean
-1.81, maximum 10.35  
Coulombic values for 2qe3.pdb1_A SES surface #4.3.2: minimum, -16.13, mean
-1.81, maximum 10.35  
To also show corresponding color key, enter the above coulombic command and
add key true  

> style sel sphere

Changed 3543 atom styles  

> select subtract #4.1

2362 atoms, 2298 bonds, 4 pseudobonds, 400 residues, 8 models selected  

> select subtract #4.2

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 5 models selected  

> select subtract #4.3

2 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> close

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1050_J339_004_volume_map_sharp.mrc
> format mrc

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 0.839, shown at level 0.0623, step 2, values float32  

> volume #1 step 1

> close #1

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1050_J339_004_volume_map_sharp.mrc

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 0.839, shown at level 0.0623, step 2, values float32  

> volume #1 step 1

> open /Users/mansoore.esmaili/Downloads/2qe3.pdb1

2qe3.pdb1 title:  
Crystal structure of human TL1A extracellular domain [more info...]  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Chain information for 2qe3.pdb1  
---  
Chain | Description  
2.1/A | No description available  
2.2/A 2.3/A | No description available  
  
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> style sphere

Changed 3543 atom styles  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> style sel sphere

Changed 3543 atom styles  

> style sel sphere

Changed 3543 atom styles  

> select subtract #2

Nothing selected  

> style sphere

Changed 3543 atom styles  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> show sel surfaces

> fitmap #2.1 inMap #1

Fit molecule 2qe3.pdb1 (#2.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 1181 atoms  
average map value = 2.496e-06, steps = 136  
shifted from previous position = 3.15  
rotated from previous position = 6.72 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#2.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99451158 -0.04424902 0.09480900 -1.40688699  
0.03919638 0.99774367 0.05450877 -2.28161575  
-0.09700704 -0.05049344 0.99400204 1.18786187  
Axis -0.44862092 0.81953219 0.35651964  
Axis point 14.03488824 0.00000000 19.50904683  
Rotation angle (degrees) 6.72059751  
Shift along axis -0.81520252  
  

> view matrix models
> #2,0.78518,-0.54745,-0.28948,1.7494,0.61274,0.75451,0.2351,0.80379,0.089709,-0.36197,0.92786,1.7114

> select subtract #2

3 models selected  

> select add #2.1

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 3 models selected  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select subtract #2

3 models selected  

> ui mousemode right "move picked models"

> view matrix models
> #2.2,1,1.9096e-15,-5.6356e-16,-0.20301,-1.8292e-15,1,-1.5549e-16,1.7694,-1.3028e-15,-6.6921e-16,1,3.9065

> view matrix models #1,1,0,0,0.63745,0,1,0,26.092,0,0,1,-16.868

> volume #1 step 2

> volume #1 step 4

> view matrix models #1,1,0,0,5.3937,0,1,0,9.4529,0,0,1,-15.813

> view matrix models
> #2.3,1,9.9837e-17,2.157e-16,-0.078547,-2.4466e-16,1,3.1357e-16,-0.044546,1.4288e-16,-1.9495e-16,1,0.20963

> ~label #1-2 atoms

> volume hide

> volume show

> volume #1 step 2

> view matrix models #1,1,0,0,26.867,0,1,0,-43.463,0,0,1,-24.382

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 3 atomic models, 1 maps.  

> fitmap #2.1 inMap #1

Fit molecule 2qe3.pdb1 (#2.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 1181 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#2.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 -0.00000000 -26.86658758  
0.00000000 1.00000000 0.00000000 43.46265577  
0.00000000 -0.00000000 1.00000000 24.38183881  
Axis -0.47505588 -0.77237886 -0.42160741  
Axis point -327586752646398080.00000000 64.00000000
-1209573609137115648.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -31.08607005  
  

> fitmap #2.1 inMap #1

Fit molecule 2qe3.pdb1 (#2.1) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 1181 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 1181, contour level = 0.062298  
  
Position of 2qe3.pdb1 (#2.1) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 -26.86658758  
-0.00000000 1.00000000 0.00000000 43.46265577  
0.00000000 0.00000000 1.00000000 24.38183881  
Axis 0.04226697 -0.16686546 -0.98507331  
Axis point 681783228351536000.00000000 456792662516916608.00000000 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis -32.40588396  
  

> vop gaussian #1 sdev 2.52

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc gaussian as #3, grid size
300,300,300, pixel 0.839, shown at step 1, values float32  

> view matrix models #3,1,0,0,8.0965,0,1,0,10.972,0,0,1,-21.804

> view matrix models
> #2.2,1,2.679e-15,-4.4033e-16,0.11082,-2.1595e-15,1,4.8988e-16,-17.255,-1.7469e-15,-3.7933e-16,1,-31.215

> open /Users/mansoore.esmaili/Downloads/2qe3-assembly1.cif

Summary of feedback from opening
/Users/mansoore.esmaili/Downloads/2qe3-assembly1.cif  
---  
warning | Unable to fetch template for 'CL': will connect using distance criteria  
  
2qe3-assembly1.cif title:  
Crystal structure of human tl1a extracellular domain [more info...]  
  
Chain information for 2qe3-assembly1.cif #4  
---  
Chain | Description  
A A-2 A-3 | TNF superfamily ligand TL1A  
  
Non-standard residues in 2qe3-assembly1.cif #4  
---  
CL — chloride ion  
  
60 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> hide #!2 models

> hide #!2.1 models

> hide #!2.2 models

> hide #!2.3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!1 models

> view matrix models #4,1,0,0,4.9405,0,1,0,181.49,0,0,1,112.95

> surface #1,4

> view matrix models #4,1,0,0,6.5483,0,1,0,115.45,0,0,1,60.685

> view matrix models #1,1,0,0,24.982,0,1,0,-48.39,0,0,1,-21.713

> view matrix models #4,1,0,0,8.1448,0,1,0,110.74,0,0,1,60.273

> ui mousemode right "rotate selected models"

> volume #1 step 1

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,5.9591,0,1,0,-30.055,0,0,1,36.203

> view matrix models #4,1,0,0,22.817,0,1,0,39.052,0,0,1,150.16

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 2.721e-05, steps = 104  
shifted from previous position = 1.97  
rotated from previous position = 3.38 degrees  
atoms outside contour = 3543, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99827897 0.05837770 -0.00557985 15.84093806  
-0.05840658 0.99827954 -0.00516093 68.33081935  
0.00526897 0.00547795 0.99997111 115.43245499  
Axis 0.09033715 -0.09211974 -0.99164164  
Axis point 994.27459519 -426.70073342 0.00000000  
Rotation angle (degrees) 3.37577565  
Shift along axis -119.33122176  
  

> view matrix models
> #4,0.99828,0.058378,-0.0055798,58.006,-0.058407,0.99828,-0.0051609,58.143,0.005269,0.005478,0.99997,89.208

> view matrix models
> #4,0.99828,0.058378,-0.0055798,162.95,-0.058407,0.99828,-0.0051609,135.04,0.005269,0.005478,0.99997,112.56

> view matrix models
> #4,0.99828,0.058378,-0.0055798,163.26,-0.058407,0.99828,-0.0051609,104.97,0.005269,0.005478,0.99997,166.69

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06924, steps = 176  
shifted from previous position = 4.31  
rotated from previous position = 12.8 degrees  
atoms outside contour = 1934, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98732973 -0.13676051 -0.08047712 153.64400598  
0.14202680 0.98780445 0.06380251 134.18409652  
0.07076999 -0.07442402 0.99471236 129.93607538  
Axis -0.39951762 -0.43715115 0.80578195  
Axis point -798.58490404 1152.61974618 0.00000000  
Rotation angle (degrees) 9.96181325  
Shift along axis -15.34207583  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06924, steps = 44  
shifted from previous position = 0.015  
rotated from previous position = 0.0322 degrees  
atoms outside contour = 1933, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98724489 -0.13726080 -0.08066593 153.63344968  
0.14254899 0.98772241 0.06390801 134.19107804  
0.07090348 -0.07459170 0.99469029 129.93923357  
Axis -0.39906837 -0.43672695 0.80623446  
Axis point -795.96349908 1149.18983896 0.00000000  
Rotation angle (degrees) 9.99305462  
Shift along axis -15.15362270  
  

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #4,0.98724,-0.13726,-0.080666,162.17,0.14255,0.98772,0.063908,101.68,0.070903,-0.074592,0.99469,160.94

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07105, steps = 72  
shifted from previous position = 3.43  
rotated from previous position = 4.59 degrees  
atoms outside contour = 1894, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.97292784 -0.20773347 -0.10128286 154.78285844  
0.21157895 0.97693906 0.02871275 131.84723164  
0.09298258 -0.04936475 0.99444324 121.63412646  
Axis -0.16659130 -0.41449755 0.89467263  
Axis point -586.74274373 844.33317200 0.00000000  
Rotation angle (degrees) 13.55263057  
Shift along axis 28.38689220  
  

> view matrix models
> #4,0.97293,-0.20773,-0.10128,161.82,0.21158,0.97694,0.028713,98.712,0.092983,-0.049365,0.99444,161.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07906, steps = 196  
shifted from previous position = 6.38  
rotated from previous position = 26.1 degrees  
atoms outside contour = 1693, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98445192 0.14728975 0.09570871 149.33314797  
-0.16585851 0.95886248 0.23037731 126.61805035  
-0.05783927 -0.24266949 0.96838326 123.68274515  
Axis -0.80488779 0.26126146 -0.53282088  
Axis point 0.00000000 261.82695776 -676.38831603  
Rotation angle (degrees) 17.08912142  
Shift along axis -153.01676026  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07906, steps = 44  
shifted from previous position = 0.00863  
rotated from previous position = 0.0196 degrees  
atoms outside contour = 1695, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98439695 0.14754636 0.09587865 149.33403644  
-0.16615638 0.95878502 0.23048502 126.61018633  
-0.05791979 -0.24281960 0.96834082 123.68256882  
Axis -0.80454825 0.26143473 -0.53324853  
Axis point 0.00000000 261.51325548 -676.10187176  
Rotation angle (degrees) 17.10616062  
Shift along axis -152.99968526  
  

> view matrix models
> #4,0.9844,0.14755,0.095879,152.2,-0.16616,0.95879,0.23049,103.21,-0.05792,-0.24282,0.96834,160.62

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07738, steps = 76  
shifted from previous position = 3.53  
rotated from previous position = 7 degrees  
atoms outside contour = 1724, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98964511 0.14348095 -0.00397238 143.49166401  
-0.13572774 0.94445460 0.29930501 131.44646280  
0.04669630 -0.29566658 0.95414922 123.33142809  
Axis -0.90259587 -0.07686642 -0.42357083  
Axis point 0.00000000 197.06714928 -353.32793087  
Rotation angle (degrees) 19.24383982  
Shift along axis -191.85839756  
  

> view matrix models
> #4,0.98965,0.14348,-0.0039724,160.37,-0.13573,0.94445,0.29931,104.43,0.046696,-0.29567,0.95415,153.08

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07505, steps = 100  
shifted from previous position = 4.87  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1807, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.95877718 0.25632563 -0.12265192 150.02102271  
-0.22308326 0.94633351 0.23385199 133.24680026  
0.17601187 -0.19685036 0.96450493 117.53798199  
Axis -0.60635999 -0.42047083 -0.67493100  
Axis point 175.91450044 -21.59760413 0.00000000  
Rotation angle (degrees) 20.80288284  
Shift along axis -226.32316499  
  

> view matrix models
> #4,0.95878,0.25633,-0.12265,156.46,-0.22308,0.94633,0.23385,103.23,0.17601,-0.19685,0.9645,163.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07593, steps = 108  
shifted from previous position = 3.23  
rotated from previous position = 6.02 degrees  
atoms outside contour = 1735, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.95426423 0.29764097 -0.02810051 148.99322619  
-0.28086066 0.92472108 0.25692064 130.50707237  
0.10245524 -0.23727785 0.96602388 126.96112188  
Axis -0.64017653 -0.16911975 -0.74938143  
Axis point 334.48982957 8.07562294 0.00000000  
Rotation angle (degrees) 22.70497247  
Shift along axis -212.59559620  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07592, steps = 76  
shifted from previous position = 0.0152  
rotated from previous position = 0.023 degrees  
atoms outside contour = 1736, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.95428387 0.29760925 -0.02776735 148.99951573  
-0.28088648 0.92465342 0.25713584 130.50737013  
0.10220118 -0.23758111 0.96597626 126.94896643  
Axis -0.64065848 -0.16830924 -0.74915200  
Axis point 335.04783031 8.31660958 0.00000000  
Rotation angle (degrees) 22.71206964  
Shift along axis -212.52747123  
  

> view matrix models
> #4,0.95428,0.29761,-0.027767,154.69,-0.28089,0.92465,0.25714,104.41,0.1022,-0.23758,0.96598,159.95

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07642, steps = 92  
shifted from previous position = 2.33  
rotated from previous position = 9.96 degrees  
atoms outside contour = 1747, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.90179670 0.42854633 0.05577413 146.26122002  
-0.43063631 0.88027117 0.19918593 134.79927537  
0.03626404 -0.20364358 0.97837325 122.84361831  
Axis -0.42441992 0.02055577 -0.90523212  
Axis point 346.99537560 -92.91516367 0.00000000  
Rotation angle (degrees) 28.33101913  
Shift along axis -170.50726129  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07643, steps = 28  
shifted from previous position = 0.0193  
rotated from previous position = 0.00974 degrees  
atoms outside contour = 1748, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.90179012 0.42857917 0.05562798 146.27209467  
-0.43063576 0.88025370 0.19926431 134.78305507  
0.03643380 -0.20364998 0.97836561 122.84342720  
Axis -0.42448294 0.02022168 -0.90521009  
Axis point 346.82429446 -92.88643564 0.00000000  
Rotation angle (degrees) 28.33293210  
Shift along axis -170.56358046  
  

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #4,0.90179,0.42858,0.055628,155.89,-0.43064,0.88025,0.19926,104.59,0.036434,-0.20365,0.97837,161.2

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07879, steps = 76  
shifted from previous position = 3.75  
rotated from previous position = 9.44 degrees  
atoms outside contour = 1702, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.84618648 0.53258390 -0.01796715 150.21399282  
-0.52775451 0.84222839 0.11012051 132.20796140  
0.07378085 -0.08370024 0.99375583 122.27410148  
Axis -0.17916424 -0.08481012 -0.98015683  
Axis point 270.22407400 -150.86205696 0.00000000  
Rotation angle (degrees) 32.74509178  
Shift along axis -157.97334572  
  

> view matrix models #1,1,0,0,6.4938,0,1,0,-30.179,0,0,1,36.286

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0788, steps = 44  
shifted from previous position = 0.559  
rotated from previous position = 0.0135 degrees  
atoms outside contour = 1701, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.84608923 0.53273933 -0.01793943 150.21657140  
-0.52790063 0.84211760 0.11026727 132.20330404  
0.07385083 -0.08382571 0.99374006 122.27478653  
Axis -0.17935821 -0.08482190 -0.98012034  
Axis point 270.12631241 -150.73519596 0.00000000  
Rotation angle (degrees) 32.75694402  
Shift along axis -158.00031654  
  

> view matrix models
> #4,0.84609,0.53274,-0.017939,152.84,-0.5279,0.84212,0.11027,101.09,0.073851,-0.083826,0.99374,162.69

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07829, steps = 100  
shifted from previous position = 1.56  
rotated from previous position = 10.3 degrees  
atoms outside contour = 1699, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.87997067 0.46446945 -0.09959797 146.06433831  
-0.43132430 0.86909695 0.24213600 129.55019929  
0.19902506 -0.17011355 0.96511678 125.50919055  
Axis -0.40011561 -0.28983351 -0.86942742  
Axis point 189.48220817 -88.81640327 0.00000000  
Rotation angle (degrees) 31.00835356  
Shift along axis -205.11174237  
  

> view matrix models
> #4,0.87997,0.46447,-0.099598,152.3,-0.43132,0.8691,0.24214,99.058,0.19903,-0.17011,0.96512,161.82

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0783, steps = 64  
shifted from previous position = 0.399  
rotated from previous position = 0.0213 degrees  
atoms outside contour = 1704, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.88013671 0.46415972 -0.09957472 146.06516601  
-0.43105268 0.86927255 0.24198930 129.53513770  
0.19887926 -0.17006172 0.96515597 125.51213410  
Axis -0.40016911 -0.28984776 -0.86939804  
Axis point 189.54638103 -88.90114159 0.00000000  
Rotation angle (degrees) 30.98716911  
Shift along axis -205.11624098  
  

> view matrix models
> #4,0.88014,0.46416,-0.099575,155.43,-0.43105,0.86927,0.24199,102.94,0.19888,-0.17006,0.96516,161.54

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07774, steps = 96  
shifted from previous position = 3.63  
rotated from previous position = 12.1 degrees  
atoms outside contour = 1681, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76541435 0.63293280 -0.11634836 146.18069040  
-0.57661551 0.75479578 0.31272653 132.79112844  
0.28575413 -0.17227711 0.94269039 122.78821030  
Axis -0.35562937 -0.29484203 -0.88690243  
Axis point 154.13194640 -61.43392897 0.00000000  
Rotation angle (degrees) 42.99188738  
Shift along axis -200.03971577  
  

> view matrix models
> #4,0.76541,0.63293,-0.11635,151.83,-0.57662,0.7548,0.31273,104.11,0.28575,-0.17228,0.94269,160.05

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07774, steps = 60  
shifted from previous position = 1.98  
rotated from previous position = 0.00803 degrees  
atoms outside contour = 1681, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76542259 0.63289882 -0.11647889 146.18844717  
-0.57655033 0.75483443 0.31275341 132.79302482  
0.28586354 -0.17223258 0.94266536 122.78647666  
Axis -0.35562255 -0.29502304 -0.88684497  
Axis point 154.08775385 -61.46004614 0.00000000  
Rotation angle (degrees) 42.99096907  
Shift along axis -200.05747975  
  

> view matrix models #1,1,0,0,6.6002,0,1,0,-29.466,0,0,1,36.67

> ui mousemode right "rotate selected models"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07774, steps = 48  
shifted from previous position = 0.815  
rotated from previous position = 0.00748 degrees  
atoms outside contour = 1679, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76539657 0.63294734 -0.11638624 146.18811825  
-0.57663312 0.75479612 0.31269323 132.79248199  
0.28576623 -0.17222216 0.94269676 122.78759959  
Axis -0.35556157 -0.29487610 -0.88691829  
Axis point 154.13034816 -61.46247229 0.00000000  
Rotation angle (degrees) 42.99235239  
Shift along axis -200.03877434  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.76223,0.58726,-0.27229,153.22,-0.56605,0.80875,0.15971,103.54,0.314,0.032396,0.94887,158.64

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0787, steps = 164  
shifted from previous position = 3.2  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1714, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.70200365 0.69776669 -0.14252203 145.24245168  
-0.66954964 0.71483167 0.20178941 132.65961687  
0.24268119 -0.04623133 0.96900387 119.28254424  
Axis -0.17199419 -0.26712572 -0.94818872  
Axis point 168.66349436 -93.35055971 0.00000000  
Rotation angle (degrees) 46.13833332  
Shift along axis -173.52001596  
  

> view matrix models
> #4,0.93179,-0.25795,0.25539,152.46,-0.33975,-0.37204,0.8638,102.02,-0.12781,-0.89165,-0.43431,163.34

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08476, steps = 100  
shifted from previous position = 2.41  
rotated from previous position = 16.8 degrees  
atoms outside contour = 1601, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98612408 -0.06923771 0.15088217 143.89050989  
-0.16266567 -0.22148637 0.96150074 132.16447573  
-0.03315376 -0.97270238 -0.22967564 125.50021856  
Axis -0.99435498 0.09461108 -0.04803040  
Axis point 0.00000000 120.12210269 1.70461325  
Rotation angle (degrees) 103.44541925  
Shift along axis -136.60184660  
  

> view matrix models
> #4,0.95884,-0.15189,0.2399,150.61,-0.27728,-0.31888,0.90633,103.27,-0.061166,-0.93555,-0.34787,162.33

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08476, steps = 104  
shifted from previous position = 0.1  
rotated from previous position = 9.71 degrees  
atoms outside contour = 1601, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98615203 -0.06926865 0.15068520 143.89242182  
-0.16248690 -0.22166695 0.96148935 132.15614642  
-0.03319915 -0.97265905 -0.22985256 125.50474247  
Axis -0.99436713 0.09453698 -0.04792453  
Axis point 0.00000000 120.11129642 1.73253936  
Rotation angle (degrees) 103.45512621  
Shift along axis -136.60300839  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08476, steps = 40  
shifted from previous position = 0.00609  
rotated from previous position = 0.0068 degrees  
atoms outside contour = 1598, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98616117 -0.06921388 0.15065052 143.89282941  
-0.16243730 -0.22157388 0.96151918 132.15946617  
-0.03317026 -0.97268415 -0.22975048 125.49968664  
Axis -0.99437040 0.09450193 -0.04792599  
Axis point 0.00000000 120.11317631 1.72427163  
Rotation angle (degrees) 103.44910866  
Shift along axis -136.60814211  
  

> view matrix models
> #4,0.242,0.969,-0.04982,148.28,0.046084,0.03981,0.99814,101.29,0.96918,-0.24385,-0.035021,157.25

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07934, steps = 80  
shifted from previous position = 2.37  
rotated from previous position = 11.8 degrees  
atoms outside contour = 1729, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.27930593 0.92756010 -0.24823467 140.78915781  
0.09766165 0.22974035 0.96833960 129.17046774  
0.95522270 -0.29470600 -0.02641921 119.08321123  
Axis -0.65377647 -0.62293247 -0.42957126  
Axis point 0.00000000 11.01317352 19.24944986  
Rotation angle (degrees) 104.99213597  
Shift along axis -223.66384192  
  

> view matrix models
> #4,0.3752,0.88856,-0.26397,147.44,0.11313,0.23875,0.96447,99.703,0.92002,-0.39173,-0.010943,155.98

> view matrix models
> #4,0.27229,-0.78247,0.56,152.48,-0.72781,0.21321,0.6518,102.75,-0.62941,-0.58505,-0.51143,162.69

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07789, steps = 100  
shifted from previous position = 2.08  
rotated from previous position = 5.31 degrees  
atoms outside contour = 1739, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.30437212 -0.74961472 0.58773751 143.74660940  
-0.67988268 0.26119597 0.68522712 131.63604651  
-0.66717101 -0.60815659 -0.43014929 125.29214554  
Axis -0.71716449 0.69583049 0.03866551  
Axis point -0.00000000 190.66102504 6.71082249  
Rotation angle (degrees) 115.61301535  
Shift along axis -6.64910328  
  

> view matrix models
> #4,0.91679,0.27708,0.28761,145.62,-0.23907,-0.19611,0.95099,101.36,0.3199,-0.94062,-0.11355,158.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08187, steps = 64  
shifted from previous position = 2  
rotated from previous position = 2.66 degrees  
atoms outside contour = 1668, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.92222706 0.26175062 0.28457664 140.22539662  
-0.25099420 -0.15456956 0.95556798 132.01293837  
0.29410739 -0.95267773 -0.07685035 123.02787988  
Axis -0.96573319 -0.00482337 -0.25949210  
Axis point 0.00000000 100.84940182 -15.45159649  
Rotation angle (degrees) 98.89339084  
Shift along axis -167.98182856  
  

> volume #3 step 2

> volume #1 step 2

> volume #1 step 4

> view matrix models
> #4,0.78265,0.50988,-0.35705,147.62,0.47228,-0.11276,0.8742,101.02,0.40548,-0.85282,-0.32906,159.71

> view matrix models
> #4,-0.22844,0.85991,-0.45648,148.45,-0.40693,0.34162,0.84717,100.89,0.88443,0.37929,0.27188,154.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07806, steps = 152  
shifted from previous position = 5.08  
rotated from previous position = 12.7 degrees  
atoms outside contour = 1579, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.14846528 0.79275681 -0.59118077 140.33562398  
-0.55988049 0.42538934 0.71103990 130.77141663  
0.81516372 0.43655532 0.38069352 112.88386302  
Axis -0.13929864 -0.71370813 -0.68645218  
Axis point 67.89416005 0.00000000 60.62981065  
Rotation angle (degrees) 99.85708566  
Shift along axis -190.37055867  
  

> view matrix models
> #4,-0.13826,0.35314,-0.9253,149.14,-0.58667,0.72352,0.36379,102.22,0.79794,0.59314,0.10715,150.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07701, steps = 152  
shifted from previous position = 1.63  
rotated from previous position = 0.676 degrees  
atoms outside contour = 1616, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.13509063 0.35053516 -0.92675543 143.89775547  
-0.57846245 0.73148036 0.36099540 132.55115081  
0.80444498 0.58486031 0.10395528 113.53045597  
Axis 0.11321036 -0.87548251 -0.46980186  
Axis point 60.08618835 0.00000000 100.37828655  
Rotation angle (degrees) 98.61692973  
Shift along axis -153.09231734  
  

> view matrix models
> #4,-0.93014,-0.34204,-0.13361,152.56,-0.14893,0.0188,0.98867,101.44,-0.33566,0.9395,-0.068428,153.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07785, steps = 64  
shifted from previous position = 3.03  
rotated from previous position = 5.55 degrees  
atoms outside contour = 1604, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.92597956 -0.30483581 -0.22279358 145.31174101  
-0.22941053 -0.01442853 0.97322280 131.10192289  
-0.29988775 0.95229562 -0.05657202 119.57886509  
Axis -0.19048002 0.70171398 0.68652374  
Axis point 90.82304603 0.00000000 -7.73477130  
Rotation angle (degrees) 176.85099970  
Shift along axis 146.41079870  
  

> view matrix models
> #4,-0.17251,-0.86664,-0.46816,153.42,0.25175,-0.49829,0.82965,102.98,-0.95229,0.025267,0.30414,158.92

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08078, steps = 68  
shifted from previous position = 2.37  
rotated from previous position = 6.47 degrees  
atoms outside contour = 1642, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.14778702 -0.83152714 -0.53546393 147.55432990  
0.16359213 -0.55450375 0.81594314 135.02013221  
-0.97539562 0.03298812 0.21797975 122.75263106  
Axis -0.58409627 0.32819568 0.74237400  
Axis point 91.27141280 86.06347261 0.00000000  
Rotation angle (degrees) 137.91535681  
Shift along axis 49.25545217  
  

> view matrix models
> #4,-0.81135,0.58048,-0.068867,150.21,-0.10652,-0.030973,0.99383,103.82,0.57477,0.81368,0.08696,154.57

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07621, steps = 92  
shifted from previous position = 3.37  
rotated from previous position = 6.74 degrees  
atoms outside contour = 1669, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.85163923 0.51869901 -0.07524604 146.44645141  
-0.15303799 -0.10878252 0.98221471 134.73871587  
0.50128834 0.84800808 0.17202411 119.59437823  
Axis -0.14989458 -0.64392780 -0.75025902  
Axis point 62.37215109 -2.33392538 0.00000000  
Rotation angle (degrees) 153.40570506  
Shift along axis -198.44029580  
  

> view matrix models
> #4,-0.73378,0.40961,-0.54202,153.76,-0.46731,0.27478,0.8403,105.07,0.49313,0.8699,-0.010215,156.42

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07595, steps = 88  
shifted from previous position = 3.77  
rotated from previous position = 8.85 degrees  
atoms outside contour = 1602, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.70005316 0.32657570 -0.63503850 147.66688852  
-0.51095715 0.39215894 0.76494063 130.93482447  
0.49884705 0.85997656 -0.10766592 121.06743995  
Axis 0.06726466 -0.80254304 -0.59279013  
Axis point 73.61950414 0.00000000 53.12645277  
Rotation angle (degrees) 135.05458113  
Shift along axis -166.91565236  
  

> view matrix models
> #4,-0.52467,0.31321,-0.79159,154.01,-0.8285,0.025923,0.55939,103.92,0.19572,0.94933,0.24589,157.87

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08063, steps = 164  
shifted from previous position = 3.38  
rotated from previous position = 17.2 degrees  
atoms outside contour = 1582, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.48878925 0.06049146 -0.87030216 146.28840102  
-0.85298605 0.17615689 0.49130799 130.61408752  
0.18302966 0.98250167 -0.03450523 122.91878603  
Axis 0.33228073 -0.71255368 -0.61794560  
Axis point 88.56590822 -0.00000000 62.55868833  
Rotation angle (degrees) 132.34310728  
Shift along axis -120.41785532  
  

> surface dust #1 size 8.39

> view matrix models
> #4,-0.70726,0.067927,-0.70369,153.49,-0.70694,-0.075131,0.70327,100.59,-0.0050977,0.99486,0.10116,159.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08236, steps = 140  
shifted from previous position = 3.55  
rotated from previous position = 18.4 degrees  
atoms outside contour = 1520, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.55890845 0.27521770 -0.78222540 143.47449700  
-0.78568056 0.12592141 0.60568131 128.74632038  
0.26519314 0.95309969 0.14585466 120.97286512  
Axis 0.22695500 -0.68423804 -0.69304382  
Axis point 102.76116308 -54.17549280 0.00000000  
Rotation angle (degrees) 130.05825816  
Shift along axis -139.37037241  
  

> view matrix models
> #4,-0.8624,0.27438,-0.42542,150.76,-0.48195,-0.18788,0.85582,98.614,0.15489,0.94309,0.29427,157.89

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08217, steps = 64  
shifted from previous position = 3.22  
rotated from previous position = 2.03 degrees  
atoms outside contour = 1426, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.85345042 0.30277037 -0.42420808 141.98550121  
-0.48578760 -0.16733154 0.85791058 125.90293906  
0.18876651 0.93825916 0.28989127 119.98039665  
Axis 0.08018767 -0.61174700 -0.78697875  
Axis point 81.88109923 -10.09862584 0.00000000  
Rotation angle (degrees) 149.93359694  
Shift along axis -160.05728027  
  

> view matrix models
> #4,-0.96906,0.21685,-0.11791,148.64,-0.19466,-0.37768,0.90524,96.409,0.15177,0.90019,0.40821,156.68

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08109, steps = 100  
shifted from previous position = 7.72  
rotated from previous position = 7.44 degrees  
atoms outside contour = 1540, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.98351796 0.10390829 -0.14797126 134.73857898  
-0.17857923 -0.43006387 0.88496018 124.95626108  
0.02831760 0.89679883 0.44153141 120.61716401  
Axis 0.03553096 -0.52909044 -0.84782124  
Axis point 71.79658072 17.88889706 0.00000000  
Rotation angle (degrees) 170.41002913  
Shift along axis -163.58756572  
  

> view matrix models
> #4,-0.76745,0.25959,-0.58621,141.06,-0.6367,-0.20153,0.74431,96.226,0.075071,0.94446,0.31994,157.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08637, steps = 84  
shifted from previous position = 1.56  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1401, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.69666839 0.27642788 -0.66199757 133.09526407  
-0.71663513 -0.31057207 0.62448306 127.07315816  
-0.03297343 0.90946832 0.41446367 120.31024023  
Axis 0.23560854 -0.52003902 -0.82100428  
Axis point 95.63051041 -8.30488689 0.00000000  
Rotation angle (degrees) 142.78659035  
Shift along axis -133.49984330  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.69667,0.27643,-0.662,139.53,-0.71664,-0.31057,0.62448,97.592,-0.032973,0.90947,0.41446,157.16

> view matrix models
> #4,-0.69667,0.27643,-0.662,142.55,-0.71664,-0.31057,0.62448,96.66,-0.032973,0.90947,0.41446,155.31

> view matrix models
> #4,-0.69667,0.27643,-0.662,145.04,-0.71664,-0.31057,0.62448,97.027,-0.032973,0.90947,0.41446,153.24

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08459, steps = 200  
shifted from previous position = 3.29  
rotated from previous position = 8.62 degrees  
atoms outside contour = 1448, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67668746 0.40692240 -0.61360267 136.79035997  
-0.72926674 -0.25575835 0.63463193 127.41341969  
0.10131194 0.87692749 0.46982344 119.10910540  
Axis 0.17762459 -0.52409717 -0.83292956  
Axis point 93.66547020 -12.06648487 0.00000000  
Rotation angle (degrees) 136.99642810  
Shift along axis -141.68917640  
  

> view matrix models
> #4,-0.67669,0.40692,-0.6136,140.68,-0.72927,-0.25576,0.63463,98.851,0.10131,0.87693,0.46982,157.41

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08506, steps = 164  
shifted from previous position = 3.43  
rotated from previous position = 9.75 degrees  
atoms outside contour = 1411, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56717855 0.43756088 -0.69774563 131.57208421  
-0.80433317 -0.11213194 0.58350200 128.71596644  
0.17707808 0.89216977 0.41554356 118.23377211  
Axis 0.19912421 -0.56435622 -0.80115642  
Axis point 95.01787043 -24.61766303 0.00000000  
Rotation angle (degrees) 129.18921812  
Shift along axis -141.16621465  
  

> view matrix models
> #4,-0.56718,0.43756,-0.69775,139.26,-0.80433,-0.11213,0.5835,97.432,0.17708,0.89217,0.41554,157.02

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08506, steps = 144  
shifted from previous position = 2.98  
rotated from previous position = 0.0281 degrees  
atoms outside contour = 1411, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56746979 0.43716989 -0.69775392 131.57715685  
-0.80417006 -0.11221067 0.58371165 128.70588546  
0.17688572 0.89235153 0.41523510 118.23293113  
Axis 0.19917732 -0.56443896 -0.80108492  
Axis point 95.01420641 -24.61272881 0.00000000  
Rotation angle (degrees) 129.21429879  
Shift along axis -141.15404977  
  

> view matrix models
> #4,-0.56747,0.43717,-0.69775,141.87,-0.80417,-0.11221,0.58371,95.095,0.17689,0.89235,0.41524,152.81

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.085, steps = 72  
shifted from previous position = 2.33  
rotated from previous position = 9.56 degrees  
atoms outside contour = 1402, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67121105 0.47120855 -0.57222219 135.48403356  
-0.70655522 -0.17323850 0.68612546 124.94993405  
0.22417727 0.86484156 0.44921445 118.22521924  
Axis 0.12471982 -0.55577977 -0.82192080  
Axis point 87.42812207 -17.07545515 0.00000000  
Rotation angle (degrees) 134.23617060  
Shift along axis -149.71886915  
  

> view matrix models
> #4,-0.67121,0.47121,-0.57222,146.23,-0.70656,-0.17324,0.68613,90.479,0.22418,0.86484,0.44921,157.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08514, steps = 116  
shifted from previous position = 5.41  
rotated from previous position = 11.2 degrees  
atoms outside contour = 1431, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.78409908 0.36549430 -0.50159999 136.80159577  
-0.58091464 -0.14771675 0.80044859 123.65490060  
0.21846467 0.91901778 0.32814555 119.93388792  
Axis 0.09921355 -0.60251887 -0.79191394  
Axis point 82.13591357 -15.68092659 -0.00000000  
Rotation angle (degrees) 143.30570432  
Shift along axis -155.90915566  
  

> view matrix models
> #4,-0.7841,0.36549,-0.5016,142.16,-0.58091,-0.14772,0.80045,95.959,0.21846,0.91902,0.32815,158.16

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08514, steps = 100  
shifted from previous position = 2.66  
rotated from previous position = 0.00997 degrees  
atoms outside contour = 1429, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.78417344 0.36554037 -0.50145016 136.80220276  
-0.58079478 -0.14778532 0.80052291 123.65509570  
0.21851646 0.91898843 0.32819326 119.93714600  
Axis 0.09913741 -0.60250126 -0.79193687  
Axis point 82.12832507 -15.67216311 -0.00000000  
Rotation angle (degrees) 143.31026960  
Shift along axis -155.92278206  
  

> view matrix models
> #4,-0.78417,0.36554,-0.50145,141.98,-0.58079,-0.14779,0.80052,98.046,0.21852,0.91899,0.32819,154.79

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08344, steps = 80  
shifted from previous position = 1.37  
rotated from previous position = 5.54 degrees  
atoms outside contour = 1423, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.75668316 0.45136649 -0.47296817 134.83143031  
-0.57932854 -0.12763548 0.80503890 126.64141038  
0.30300006 0.88316334 0.35806911 116.87735046  
Axis 0.06044433 -0.60036117 -0.79744150  
Axis point 78.72447881 -13.90013860 0.00000000  
Rotation angle (degrees) 139.74045003  
Shift along axis -161.08363980  
  

> view matrix models
> #4,-0.75668,0.45137,-0.47297,142.53,-0.57933,-0.12764,0.80504,92.057,0.303,0.88316,0.35807,159.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08291, steps = 100  
shifted from previous position = 3.54  
rotated from previous position = 4.04 degrees  
atoms outside contour = 1444, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74674419 0.44784904 -0.49173606 133.18012559  
-0.57335245 -0.05872551 0.81720149 122.01685466  
0.33710545 0.89217854 0.30062828 120.43744789  
Axis 0.05691438 -0.62916587 -0.77518453  
Axis point 75.79850398 -22.39811510 0.00000000  
Rotation angle (degrees) 138.80050471  
Shift along axis -162.55022325  
  

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> view matrix models #1,1,0,0,7.5618,0,1,0,-32.381,0,0,1,38.511

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08674, steps = 120  
shifted from previous position = 4.03  
rotated from previous position = 12.5 degrees  
atoms outside contour = 1420, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72349927 0.59464760 -0.35063235 129.08636919  
-0.53699130 -0.16560986 0.82717212 124.50085183  
0.43380774 0.78674494 0.43913920 121.45355171  
Axis -0.02934760 -0.56945434 -0.82149892  
Axis point 68.48674962 -9.97149829 0.00000000  
Rotation angle (degrees) 136.46759700  
Shift along axis -174.45988696  
  

> view matrix models #1,1,0,0,5.7191,0,1,0,-30.84,0,0,1,42.951

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08474, steps = 84  
shifted from previous position = 3.15  
rotated from previous position = 4.33 degrees  
atoms outside contour = 1403, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.69693997 0.64869065 -0.30573701 131.71296130  
-0.53125059 -0.18064285 0.82773243 125.17869580  
0.48171308 0.73930278 0.47051451 118.94536291  
Axis -0.06221644 -0.55402618 -0.83017113  
Axis point 68.31094867 -7.43824846 0.00000000  
Rotation angle (degrees) 134.71124199  
Shift along axis -176.29199245  
  

> view matrix models #1,1,0,0,4.7706,0,1,0,-30.876,0,0,1,46.872

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08407, steps = 104  
shifted from previous position = 2.96  
rotated from previous position = 15.8 degrees  
atoms outside contour = 1498, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.50102028 0.83088818 -0.24208165 130.76506325  
-0.58132429 -0.11588588 0.80537726 127.22296653  
0.64112460 0.54423828 0.54107665 116.92669592  
Axis -0.15488684 -0.52384759 -0.83761194  
Axis point 64.51750035 -6.37143065 0.00000000  
Rotation angle (degrees) 122.54179934  
Shift along axis -184.83842924  
  

> view matrix models #1,1,0,0,4.5837,0,1,0,-29.474,0,0,1,44.867

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08407, steps = 52  
shifted from previous position = 2.45  
rotated from previous position = 0.0294 degrees  
atoms outside contour = 1495, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.50083780 0.83111605 -0.24167667 130.75717624  
-0.58114986 -0.11598118 0.80548942 127.22744983  
0.64142524 0.54386992 0.54109073 116.93993940  
Axis -0.15516590 -0.52376564 -0.83761154  
Axis point 64.49343096 -6.34862245 0.00000000  
Rotation angle (degrees) 122.53835860  
Shift along axis -184.87666518  
  

> view matrix models #1,1,0,0,3.4641,0,1,0,-26.711,0,0,1,43.967

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0845, steps = 92  
shifted from previous position = 3.29  
rotated from previous position = 9.43 degrees  
atoms outside contour = 1460, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53372829 0.84003032 -0.09738160 129.54194205  
-0.55791776 -0.26324453 0.78703881 125.28460100  
0.63550129 0.47439581 0.60916888 120.35636169  
Axis -0.19429986 -0.45546850 -0.86878997  
Axis point 62.99161734 4.00559883 0.00000000  
Rotation angle (degrees) 126.43439540  
Shift along axis -186.79756973  
  

> view matrix models #1,1,0,0,1.8023,0,1,0,-25.054,0,0,1,47.446

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08449, steps = 76  
shifted from previous position = 4.2  
rotated from previous position = 0.0188 degrees  
atoms outside contour = 1459, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53384060 0.83998647 -0.09714388 129.53476569  
-0.55790049 -0.26355525 0.78694706 125.30079983  
0.63542211 0.47430091 0.60932535 120.34645058  
Axis -0.19432558 -0.45532724 -0.86885826  
Axis point 62.99861929 4.03924893 0.00000000  
Rotation angle (degrees) 126.44388767  
Shift along axis -186.78879288  
  

> view matrix models #1,1,0,0,-0.49018,0,1,0,-25.047,0,0,1,56.737

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08449, steps = 116  
shifted from previous position = 9.57  
rotated from previous position = 0.0221 degrees  
atoms outside contour = 1462, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53415309 0.83979912 -0.09704599 129.53960332  
-0.55768967 -0.26377034 0.78702442 125.29692212  
0.63534456 0.47451307 0.60924103 120.34568624  
Axis -0.19429638 -0.45534613 -0.86885489  
Axis point 62.99589944 4.04560296 0.00000000  
Rotation angle (degrees) 126.46568164  
Shift along axis -186.78548270  
  

> view matrix models #1,1,0,0,-1.0799,0,1,0,-22.45,0,0,1,54.014

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08449, steps = 84  
shifted from previous position = 3.8  
rotated from previous position = 0.0144 degrees  
atoms outside contour = 1458, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53401453 0.83986441 -0.09724330 129.53443817  
-0.55784519 -0.26357707 0.78697895 125.29201085  
0.63532451 0.47450490 0.60926830 120.34710462  
Axis -0.19424115 -0.45538122 -0.86884885  
Axis point 62.99761128 4.03061855 0.00000000  
Rotation angle (degrees) 126.45289085  
Shift along axis -186.77999023  
  

> select subtract #1

Nothing selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,-0.53401,0.83986,-0.097243,129.44,-0.55785,-0.26358,0.78698,103.49,0.63532,0.4745,0.60927,169.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0845, steps = 92  
shifted from previous position = 5.4  
rotated from previous position = 0.0175 degrees  
atoms outside contour = 1460, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53385325 0.83994394 -0.09744174 129.54431210  
-0.55789444 -0.26328301 0.78704247 125.28111582  
0.63541680 0.47452738 0.60915454 120.35015168  
Axis -0.19423620 -0.45549052 -0.86879266  
Axis point 62.99564651 4.00305909 0.00000000  
Rotation angle (degrees) 126.44072596  
Shift along axis -186.78588370  
  

> view matrix models
> #4,-0.53385,0.83994,-0.097442,136.55,-0.55789,-0.26328,0.78704,106.38,0.63542,0.47453,0.60915,171.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08353, steps = 116  
shifted from previous position = 6.78  
rotated from previous position = 8.67 degrees  
atoms outside contour = 1441, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.41951835 0.89069495 -0.17511954 130.89352065  
-0.64644330 -0.15770925 0.74648433 127.41017906  
0.63727185 0.42636873 0.64194571 118.46678356  
Axis -0.18107755 -0.45953975 -0.86950223  
Axis point 67.75275174 -1.31469371 0.00000000  
Rotation angle (degrees) 117.88127376  
Shift along axis -185.25905321  
  

> view matrix models
> #4,-0.41952,0.89069,-0.17512,134.09,-0.64644,-0.15771,0.74648,108.15,0.63727,0.42637,0.64195,170.11

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08051, steps = 116  
shifted from previous position = 2.46  
rotated from previous position = 3.79 degrees  
atoms outside contour = 1551, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.38893396 0.89183925 -0.23098296 136.63241130  
-0.68260867 -0.11059762 0.72236665 128.64101178  
0.61868876 0.43862389 0.65179237 115.76527285  
Axis -0.15663878 -0.46905705 -0.86916614  
Axis point 73.65731499 -6.46129467 0.00000000  
Rotation angle (degrees) 115.07913392  
Shift along axis -182.36116227  
  

> view matrix models
> #4,-0.38893,0.89184,-0.23098,142.73,-0.68261,-0.1106,0.72237,102.01,0.61869,0.43862,0.65179,172.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0795, steps = 148  
shifted from previous position = 5.87  
rotated from previous position = 19.3 degrees  
atoms outside contour = 1584, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.58389004 0.81100332 -0.03668844 138.15149370  
-0.63939790 -0.43155392 0.63634231 125.03245013  
0.50024268 0.39501245 0.77053386 118.77215015  
Axis -0.15417374 -0.34301879 -0.92658975  
Axis point 76.18320836 11.56308119 0.00000000  
Rotation angle (degrees) 128.49563793  
Shift along axis -174.24086897  
  

> view matrix models
> #4,-0.58389,0.811,-0.036688,146.46,-0.6394,-0.43155,0.63634,107.94,0.50024,0.39501,0.77053,168.66

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07632, steps = 156  
shifted from previous position = 5.09  
rotated from previous position = 4.65 degrees  
atoms outside contour = 1615, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56761795 0.82299628 -0.02206790 143.04771956  
-0.68078857 -0.45412732 0.57471323 132.79034870  
0.46296521 0.34124112 0.81805728 113.34469173  
Axis -0.14617337 -0.30367193 -0.94149706  
Axis point 84.38038740 16.74131449 0.00000000  
Rotation angle (degrees) 127.00207860  
Shift along axis -167.94816239  
  

> view matrix models
> #4,-0.56762,0.823,-0.022068,143.03,-0.68079,-0.45413,0.57471,105.6,0.46297,0.34124,0.81806,175.48

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07811, steps = 104  
shifted from previous position = 4.17  
rotated from previous position = 7.45 degrees  
atoms outside contour = 1554, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.66142758 0.74978383 0.01837843 141.53026059  
-0.59178074 -0.53678474 0.60137983 125.11414387  
0.46077013 0.38689320 0.79875186 120.39624867  
Axis -0.15011511 -0.30962154 -0.93893554  
Axis point 77.15310040 16.84241860 0.00000000  
Rotation angle (degrees) 134.40536411  
Shift along axis -173.02818248  
  

> view matrix models
> #4,-0.66143,0.74978,0.018378,140.66,-0.59178,-0.53678,0.60138,102.47,0.46077,0.38689,0.79875,174.26

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07809, steps = 72  
shifted from previous position = 0.441  
rotated from previous position = 0.549 degrees  
atoms outside contour = 1564, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.65859258 0.75203444 0.02645788 141.52859672  
-0.58877509 -0.53687680 0.60424100 125.17153697  
0.46861467 0.38237090 0.79636222 120.54433144  
Axis -0.15524508 -0.30938222 -0.93817994  
Axis point 76.79088805 17.04204226 0.00000000  
Rotation angle (degrees) 134.39119865  
Shift along axis -173.78974038  
  

> view matrix models
> #4,-0.65859,0.75203,0.026458,139.86,-0.58878,-0.53688,0.60424,102.37,0.46861,0.38237,0.79636,177.02

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07812, steps = 128  
shifted from previous position = 2.52  
rotated from previous position = 0.196 degrees  
atoms outside contour = 1567, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.65728571 0.75307178 0.02929815 141.53066384  
-0.58808231 -0.53681805 0.60496742 125.19545759  
0.47131167 0.38040672 0.79571103 120.58889412  
Axis -0.15705090 -0.30913077 -0.93796225  
Axis point 76.68275863 17.11292756 0.00000000  
Rotation angle (degrees) 134.36256390  
Shift along axis -174.03711715  
  

> ui mousemode right "rotate selected models"

> volume #1 step 2

> view matrix models
> #4,-0.58591,-0.044136,-0.80917,144.31,-0.57875,-0.67614,0.45594,103.46,-0.56724,0.73545,0.37061,178.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07926, steps = 100  
shifted from previous position = 4.15  
rotated from previous position = 8.59 degrees  
atoms outside contour = 1670, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53427260 -0.17319949 -0.82737822 144.68456328  
-0.51637777 -0.70806023 0.48166867 127.07722427  
-0.66925838 0.68458209 0.28886082 121.09185483  
Axis 0.47311241 -0.36867180 -0.80015358  
Axis point 114.87458008 23.41914846 0.00000000  
Rotation angle (degrees) 167.61701609  
Shift along axis -75.28980718  
  

> view matrix models
> #4,-0.32105,0.55162,-0.76983,140.38,0.49785,-0.59319,-0.63267,104.68,-0.80565,-0.58638,-0.084182,177.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07731, steps = 60  
shifted from previous position = 2.59  
rotated from previous position = 3.37 degrees  
atoms outside contour = 1717, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.29925909 0.51732377 -0.80176063 140.12068325  
0.49116272 -0.63687631 -0.59426236 128.16460471  
-0.81804840 -0.57163334 -0.06349912 125.07478676  
Axis 0.59187084 0.42601298 -0.68425277  
Axis point 124.89512391 102.25384969 0.00000000  
Rotation angle (degrees) 178.90463760  
Shift along axis 51.95036251  
  

> show sel cartoons

> hide sel surfaces

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07731, steps = 28  
shifted from previous position = 0.0203  
rotated from previous position = 0.0701 degrees  
atoms outside contour = 1723, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.29872960 0.51673671 -0.80233646 140.11147402  
0.49205622 -0.63696037 -0.59343253 128.17631261  
-0.81770490 -0.57207051 -0.06398460 125.06761915  
Axis 0.59209996 0.42597326 -0.68407925  
Axis point 124.88045662 102.30694238 0.00000000  
Rotation angle (degrees) 178.96637366  
Shift along axis 52.00351706  
  

> view matrix models
> #4,0.31221,0.49939,-0.80817,137.4,0.89419,-0.44178,0.072446,102.22,-0.32086,-0.74527,-0.58448,179.63

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07878, steps = 64  
shifted from previous position = 2.48  
rotated from previous position = 11.7 degrees  
atoms outside contour = 1664, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.44144760 0.34579979 -0.82797737 140.42013051  
0.83551568 -0.49486732 0.23878838 126.21958790  
-0.32716597 -0.79720063 -0.50737913 125.54918848  
Axis -0.82841832 -0.40046886 0.39159644  
Axis point 0.00000000 65.55290444 79.20024760  
Rotation angle (degrees) 141.29716103  
Shift along axis -117.70900775  
  

> view matrix models
> #4,0.19326,0.38454,-0.90265,140.13,0.82848,-0.55681,-0.059825,104.79,-0.52561,-0.73627,-0.42619,179.72

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08091, steps = 80  
shifted from previous position = 3.26  
rotated from previous position = 6.14 degrees  
atoms outside contour = 1670, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.25231447 0.33293239 -0.90856669 138.87332412  
0.84728240 -0.52953820 0.04125310 129.13706952  
-0.46738628 -0.78022132 -0.41569791 125.08782050  
Axis -0.77140845 -0.41429202 0.48300219  
Axis point 0.00000000 59.70337626 89.64343257  
Rotation angle (degrees) 147.82879026  
Shift along axis -100.21082201  
  

> view matrix models
> #4,0.39056,0.51293,-0.76444,136.51,0.89668,-0.39996,0.18975,105.78,-0.20842,-0.75957,-0.61613,178.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07998, steps = 68  
shifted from previous position = 2.72  
rotated from previous position = 8.58 degrees  
atoms outside contour = 1642, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.27148053 0.54130248 -0.79579517 137.98394982  
0.95219604 -0.27140201 0.14022718 126.86996373  
-0.14007509 -0.79582195 -0.58910644 122.24947560  
Axis -0.77073319 -0.53991314 0.33832551  
Axis point 0.00000000 51.85582703 79.38025956  
Rotation angle (degrees) 142.60937150  
Shift along axis -133.48745389  
  

> view matrix models
> #4,-0.30383,0.85718,-0.41584,136.57,0.52532,-0.2134,-0.82371,108.11,-0.79481,-0.46872,-0.38546,176.61

> view matrix models
> #4,0.90695,-0.19809,-0.37175,136.02,-0.2982,-0.92525,-0.23451,110.74,-0.2975,0.32355,-0.89823,174.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08065, steps = 124  
shifted from previous position = 2.02  
rotated from previous position = 8.29 degrees  
atoms outside contour = 1637, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93274838 -0.25598225 -0.25387702 135.36057119  
-0.30494178 -0.93581993 -0.17678111 131.89341220  
-0.19233035 0.24231001 -0.95094421 120.04775943  
Axis 0.98284441 -0.14433807 -0.11481895  
Axis point 0.00000000 68.66873231 75.96000667  
Rotation angle (degrees) 167.68986638  
Shift along axis 100.21738272  
  

> view matrix models
> #4,0.8769,-0.46312,-0.12868,134.66,-0.46681,-0.88436,0.0017245,109.25,-0.1146,0.058556,-0.99168,174.47

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0821, steps = 88  
shifted from previous position = 2.13  
rotated from previous position = 9.61 degrees  
atoms outside contour = 1618, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.92057364 -0.39053232 0.00535586 133.75352804  
-0.38959762 -0.91916420 -0.05788669 130.26854913  
0.02752954 0.05120233 -0.99830879 120.65762759  
Axis 0.97992653 -0.19918206 0.00839627  
Axis point 0.00000000 77.02573034 61.90754404  
Rotation angle (degrees) 176.80916285  
Shift along axis 106.13454745  
  

> volume #1 color #b2b2b280

> view matrix models
> #4,0.61755,-0.43373,0.65614,131.83,-0.13544,-0.88039,-0.45449,108.11,0.77479,0.1918,-0.60243,171.11

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08198, steps = 116  
shifted from previous position = 6.71  
rotated from previous position = 18.8 degrees  
atoms outside contour = 1577, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.75997081 -0.22268414 0.61061947 133.29493932  
0.12451102 -0.87219693 -0.47304284 129.18943803  
0.63791956 0.43552760 -0.63511758 123.51286119  
Axis 0.93375248 -0.02805674 0.35681806  
Axis point 0.00000000 57.60561543 54.89409985  
Rotation angle (degrees) 150.88817667  
Shift along axis 164.91146460  
  

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-0.087121,0,1,0,-24.764,0,0,1,55.11

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08189, steps = 104  
shifted from previous position = 3.09  
rotated from previous position = 2.68 degrees  
atoms outside contour = 1568, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.78390892 -0.20582880 0.58576557 132.98225117  
0.14075459 -0.85997178 -0.49054734 128.93170950  
0.60471063 0.46699363 -0.64516820 124.03500136  
Axis 0.94013852 -0.01860075 0.34028455  
Axis point 0.00000000 55.89087802 57.16518357  
Rotation angle (degrees) 149.38576465  
Shift along axis 164.83070531  
  

> view matrix models #1,1,0,0,-0.99106,0,1,0,-24.456,0,0,1,56.033

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08197, steps = 68  
shifted from previous position = 0.972  
rotated from previous position = 2.31 degrees  
atoms outside contour = 1574, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76301403 -0.22059455 0.60757521 133.26673530  
0.12750662 -0.87012696 -0.47604741 129.15741826  
0.63368103 0.44070072 -0.63579181 123.59548171  
Axis 0.93454154 -0.02661252 0.35485756  
Axis point 0.00000000 57.35389720 55.22239904  
Rotation angle (degrees) 150.62785531  
Shift along axis 164.96488658  
  

> view matrix models #1,1,0,0,-1.8841,0,1,0,-24.37,0,0,1,57.177

> view matrix models #1,1,0,0,-0.91262,0,1,0,-23.836,0,0,1,55.262

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08198, steps = 52  
shifted from previous position = 1.06  
rotated from previous position = 0.316 degrees  
atoms outside contour = 1578, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76046052 -0.22230986 0.61014598 133.28948432  
0.12514040 -0.87179704 -0.47361355 129.18372463  
0.63721242 0.43651832 -0.63514729 123.52677024  
Axis 0.93387671 -0.02777259 0.35651504  
Axis point 0.00000000 57.55889957 54.95114227  
Rotation angle (degrees) 150.83758361  
Shift along axis 164.92732965  
  

> volume #1 color white

> volume #1 color #ffffffa8

[Repeated 1 time(s)]

> volume #1 color white

> volume #1 color #dfdfdf

> volume #1 color #dfdfdfad

> view matrix models #1,1,0,0,-0.98163,0,1,0,-23.698,0,0,1,55.21

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.76046,-0.22231,0.61015,132.75,0.12514,-0.8718,-0.47361,107.27,0.63721,0.43652,-0.63515,176.22

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08197, steps = 92  
shifted from previous position = 3.2  
rotated from previous position = 0.384 degrees  
atoms outside contour = 1572, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76360972 -0.22046753 0.60687253 133.25217655  
0.12777538 -0.86971386 -0.47672974 129.16449722  
0.63290888 0.44157883 -0.63595164 123.60941511  
Axis 0.93469649 -0.02650099 0.35445756  
Axis point 0.00000000 57.32201330 55.29306988  
Rotation angle (degrees) 150.57830769  
Shift along axis 164.94164728  
  

> view matrix models
> #4,0.76361,-0.22047,0.60687,132.68,0.12778,-0.86971,-0.47673,105.37,0.63291,0.44158,-0.63595,178.38

> view matrix models
> #4,0.76361,-0.22047,0.60687,135.84,0.12778,-0.86971,-0.47673,103.82,0.63291,0.44158,-0.63595,175.86

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08004, steps = 124  
shifted from previous position = 2.56  
rotated from previous position = 5.12 degrees  
atoms outside contour = 1589, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.79415876 -0.27094206 0.54396899 137.67929232  
0.08098387 -0.83994542 -0.53659417 127.54216482  
0.60229019 0.47019368 -0.64510808 123.13204142  
Axis 0.94258155 -0.05460186 0.32948241  
Axis point 0.00000000 57.12034144 58.45142246  
Rotation angle (degrees) 147.71989912  
Shift along axis 163.37976335  
  

> view matrix models
> #4,0.79416,-0.27094,0.54397,131.25,0.080984,-0.83995,-0.53659,108.62,0.60229,0.47019,-0.64511,180.4

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08205, steps = 88  
shifted from previous position = 3.7  
rotated from previous position = 1.69 degrees  
atoms outside contour = 1604, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.80605320 -0.28289207 0.51985605 132.73587020  
0.06065527 -0.83425730 -0.54802892 128.92211366  
0.58872674 0.47327248 -0.65529687 123.97645781  
Axis 0.94588282 -0.06378490 0.31817789  
Axis point 0.00000000 57.45576992 61.18907120  
Rotation angle (degrees) 147.32543044  
Shift along axis 156.77586406  
  

> view matrix models
> #4,0.80605,-0.28289,0.51986,133.6,0.060655,-0.83426,-0.54803,105.15,0.58873,0.47327,-0.6553,176.8

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08205, steps = 84  
shifted from previous position = 3.02  
rotated from previous position = 0.0231 degrees  
atoms outside contour = 1609, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.80613565 -0.28290936 0.51971877 132.73649227  
0.06036177 -0.83440511 -0.54783625 128.93617914  
0.58864400 0.47300148 -0.65556680 123.98486582  
Axis 0.94591155 -0.06386634 0.31807613  
Axis point 0.00000000 57.47074907 61.19193845  
Rotation angle (degrees) 147.34322742  
Shift along axis 156.75892602  
  

> view matrix models
> #4,0.80614,-0.28291,0.51972,131.83,0.060362,-0.83441,-0.54784,107.14,0.58864,0.473,-0.65557,177.01

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08205, steps = 80  
shifted from previous position = 2.9  
rotated from previous position = 0.0173 degrees  
atoms outside contour = 1607, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.80595709 -0.28303160 0.51992911 132.73811376  
0.06036986 -0.83442095 -0.54781125 128.93701378  
0.58888763 0.47290041 -0.65542090 123.97870324  
Axis 0.94586104 -0.06390167 0.31821922  
Axis point 0.00000000 57.47900549 61.17775654  
Rotation angle (degrees) 147.34580186  
Shift along axis 156.76492505  
  

> view matrix models
> #4,0.80596,-0.28303,0.51993,134.03,0.06037,-0.83442,-0.54781,105.72,0.58889,0.4729,-0.65542,176.07

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08188, steps = 112  
shifted from previous position = 3.69  
rotated from previous position = 5.98 degrees  
atoms outside contour = 1565, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.78420281 -0.20507417 0.58563687 132.97724485  
0.14152124 -0.85982082 -0.49059138 128.91174161  
0.60415039 0.46760319 -0.64525155 124.03619118  
Axis 0.94021653 -0.01816617 0.34009245  
Axis point 0.00000000 55.84106137 57.18081928  
Rotation angle (degrees) 149.36543485  
Shift along axis 164.86934316  
  

> view matrix models
> #4,0.7842,-0.20507,0.58564,130.98,0.14152,-0.85982,-0.49059,106.4,0.60415,0.4676,-0.64525,180.25

> view matrix models
> #4,0.7842,-0.20507,0.58564,129.61,0.14152,-0.85982,-0.49059,103.04,0.60415,0.4676,-0.64525,182.99

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08353, steps = 136  
shifted from previous position = 3.26  
rotated from previous position = 17 degrees  
atoms outside contour = 1560, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.61272448 -0.26984598 0.74280001 130.26409313  
0.03970360 -0.92820275 -0.36995038 127.40072253  
0.78929864 0.25616949 -0.55801869 124.46919827  
Axis 0.89444860 -0.06642598 0.44220955  
Axis point 0.00000000 63.24912688 43.99837168  
Rotation angle (degrees) 159.51248492  
Shift along axis 163.09328610  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.19863,0.41786,0.88653,129.23,0.94269,-0.16598,0.28944,97.258,0.2681,0.89322,-0.36094,178.81

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07928, steps = 112  
shifted from previous position = 2.71  
rotated from previous position = 9 degrees  
atoms outside contour = 1666, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.22214844 0.48811014 0.84403706 129.84876010  
0.96210270 -0.03066633 0.27095749 120.32086610  
0.15814062 0.87224312 -0.46279961 126.76528086  
Axis 0.58494051 0.66725128 0.46110772  
Axis point 17.94216561 0.00000000 20.92372576  
Rotation angle (degrees) 149.07125895  
Shift along axis 214.69050147  
  

> view matrix models
> #4,-0.74573,0.66609,0.01436,132.13,0.6641,0.74143,0.096216,95.793,0.053442,0.081288,-0.99526,185.93

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08301, steps = 220  
shifted from previous position = 5.89  
rotated from previous position = 16.3 degrees  
atoms outside contour = 1558, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.81403154 0.55395083 0.17461710 127.92134088  
0.57999965 0.75929606 0.29507608 120.08197800  
0.03087156 0.34147910 -0.93938223 127.52888958  
Axis 0.30273492 0.93780104 0.16994347  
Axis point 46.58637018 0.00000000 51.33842540  
Rotation angle (degrees) 175.60455968  
Shift along axis 173.01196286  
  

> view matrix models
> #4,-0.96982,0.082214,-0.22955,129.8,0.1345,0.96564,-0.22239,98.481,0.20338,-0.24655,-0.94755,183.91

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0826, steps = 120  
shifted from previous position = 2.87  
rotated from previous position = 9.2 degrees  
atoms outside contour = 1605, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93375408 0.19379695 -0.30090873 129.86104251  
0.27716758 0.92345689 -0.26534036 124.72969617  
0.22645409 -0.33116479 -0.91599587 128.04969593  
Axis -0.12236058 -0.98031117 0.15497710  
Axis point 46.91639790 0.00000000 81.94738149  
Rotation angle (degrees) 164.39658310  
Shift along axis -118.31901657  
  

> view matrix models
> #4,-0.75431,0.65208,0.076219,126.07,0.64974,0.72484,0.22901,99.179,0.094083,0.22226,-0.97044,182.24

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08344, steps = 204  
shifted from previous position = 1.46  
rotated from previous position = 10.1 degrees  
atoms outside contour = 1572, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.77642979 0.58590091 0.23211396 126.96634252  
0.63017002 0.72561950 0.27633689 121.35484834  
-0.00652038 0.36082746 -0.93260979 126.92573813  
Axis 0.32876762 0.92856811 0.17225887  
Axis point 45.35413622 0.00000000 49.80934191  
Rotation angle (degrees) 172.61731667  
Shift along axis 176.29274872  
  

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-2.6434,0,1,0,-23.276,0,0,1,58.685

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08491, steps = 120  
shifted from previous position = 4.23  
rotated from previous position = 8.87 degrees  
atoms outside contour = 1564, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72789195 0.57813546 0.36869052 131.06216164  
0.68223238 0.66456337 0.30481881 123.28662538  
-0.06879165 0.47340777 -0.87815306 121.16572218  
Axis 0.35103732 0.91092898 0.21675146  
Axis point 47.20405511 0.00000000 41.48297582  
Rotation angle (degrees) 166.10580578  
Shift along axis 184.57591670  
  

> view matrix models #1,1,0,0,-4.2852,0,1,0,-21.733,0,0,1,61.008

> view matrix models #1,1,0,0,2.6703,0,1,0,-20.076,0,0,1,62.339

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08176, steps = 152  
shifted from previous position = 4.92  
rotated from previous position = 9.19 degrees  
atoms outside contour = 1580, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63452151 0.62077504 0.46045718 127.33291024  
0.77119855 0.54807235 0.32383561 120.81345476  
-0.05133478 0.56058457 -0.82650450 121.58358229  
Axis 0.40565838 0.87693184 0.25774372  
Axis point 41.92133056 0.00000000 38.72666725  
Rotation angle (degrees) 163.03375334  
Shift along axis 188.93623240  
  

> view matrix models #1,1,0,0,-20.849,0,1,0,-24.903,0,0,1,60.169

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07841, steps = 116  
shifted from previous position = 2.39  
rotated from previous position = 12.6 degrees  
atoms outside contour = 1717, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.58450994 0.52327035 0.62010989 148.50655797  
0.77248244 0.59269541 0.22799787 126.19581250  
-0.24823176 0.61229102 -0.75065352 124.93824464  
Axis 0.39144255 0.88449630 0.25384844  
Axis point 57.27188115 0.00000000 34.03271257  
Rotation angle (degrees) 150.60235913  
Shift along axis 201.46689323  
  

> view matrix models #1,1,0,0,-9.7298,0,1,0,-21.152,0,0,1,65.604

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08089, steps = 80  
shifted from previous position = 3.5  
rotated from previous position = 3.67 degrees  
atoms outside contour = 1611, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53596834 0.55683418 0.63456571 136.77326940  
0.80134443 0.57208694 0.17482458 124.68527718  
-0.26567845 0.60220614 -0.75283646 122.30330757  
Axis 0.41651091 0.87734603 0.23829102  
Axis point 50.70308139 0.00000000 35.51151015  
Rotation angle (degrees) 149.13281972  
Shift along axis 195.50347134  
  

> view matrix models #1,1,0,0,-10.503,0,1,0,-18.106,0,0,1,75.153

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08562, steps = 176  
shifted from previous position = 8.95  
rotated from previous position = 25 degrees  
atoms outside contour = 1538, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.71951256 0.64253543 0.26353348 133.78322705  
0.68989405 0.70483513 0.16508675 121.27500758  
-0.07967357 0.30059217 -0.95041910 120.99098749  
Axis 0.36424657 0.92256081 0.12730276  
Axis point 47.96352149 0.00000000 48.58556962  
Rotation angle (degrees) 169.28010392  
Shift along axis 176.01613661  
  

> view matrix models #1,1,0,0,-16.503,0,1,0,-16.303,0,0,1,83.706

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07854, steps = 92  
shifted from previous position = 9.65  
rotated from previous position = 4.35 degrees  
atoms outside contour = 1696, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67482817 0.69602084 0.24527931 143.26270411  
0.73683027 0.65398132 0.17143392 125.95957579  
-0.04108651 0.29641766 -0.95417423 118.51716810  
Axis 0.39664043 0.90879232 0.12951021  
Axis point 48.25868425 0.00000000 47.26399207  
Rotation angle (degrees) 170.93511096  
Shift along axis 186.64405893  
  

> view matrix models #1,1,0,0,-19.817,0,1,0,-16.46,0,0,1,84.972

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07854, steps = 64  
shifted from previous position = 3.56  
rotated from previous position = 0.0338 degrees  
atoms outside contour = 1693, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67466231 0.69624038 0.24511244 143.25519178  
0.73696996 0.65396272 0.17090361 125.95969460  
-0.04130440 0.29594273 -0.95431224 118.52469293  
Axis 0.39674314 0.90878694 0.12923301  
Axis point 48.25111501 0.00000000 47.28712830  
Rotation angle (degrees) 170.93342821  
Shift along axis 186.62334331  
  

> view matrix models #1,1,0,0,-17.784,0,1,0,-17.477,0,0,1,80.856

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08031, steps = 232  
shifted from previous position = 2.69  
rotated from previous position = 8.59 degrees  
atoms outside contour = 1602, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72689193 0.66813109 0.15883631 139.55789771  
0.68400043 0.72503227 0.08044631 125.84678154  
-0.06141277 0.16711988 -0.98402206 121.79067230  
Axis 0.36537056 0.92845525 0.06689689  
Axis point 48.54316636 0.00000000 53.94946499  
Rotation angle (degrees) 173.18808267  
Shift along axis 175.98087033  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.44219,0.51077,0.73728,117.37,0.80826,0.12942,-0.57443,111.49,-0.38882,0.84992,-0.35561,199.92

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07821, steps = 104  
shifted from previous position = 1.37  
rotated from previous position = 1.39 degrees  
atoms outside contour = 1662, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.45312260 0.49621810 0.74057242 134.40383349  
0.79988824 0.14040591 -0.58349377 127.83909875  
-0.39352091 0.85676939 -0.33329793 118.91716119  
Axis 0.77510375 0.61033290 0.16342560  
Axis point 0.00000000 -26.60624182 47.37827585  
Rotation angle (degrees) 111.70850721  
Shift along axis 201.63543143  
  

> view matrix models
> #4,0.16924,-0.62961,0.75825,120.48,-0.35159,-0.7573,-0.55035,115.95,0.92073,-0.17346,-0.34953,199.03

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07999, steps = 124  
shifted from previous position = 1.26  
rotated from previous position = 7.33 degrees  
atoms outside contour = 1641, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.08696515 -0.68140554 0.72672110 138.82153367  
-0.29031255 -0.71515706 -0.63582152 134.47095419  
0.95297203 -0.15568194 -0.26001432 118.49544340  
Axis 0.72825598 -0.34316812 0.59319378  
Axis point 0.00000000 94.79718527 23.36824392  
Rotation angle (degrees) 160.75244976  
Shift along axis 125.24222873  
  

> view matrix models
> #4,-0.42865,-0.88063,-0.20188,125.59,0.50995,-0.051372,-0.85867,113.55,0.7458,-0.47102,0.4711,198.77

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07913, steps = 152  
shifted from previous position = 2.01  
rotated from previous position = 25.5 degrees  
atoms outside contour = 1678, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.23711708 -0.77660499 -0.58366101 145.46851126  
0.62697539 0.33659048 -0.70257292 129.10639930  
0.74207638 -0.53253313 0.40710087 117.85498002  
Axis 0.08773181 -0.68401246 0.72417545  
Axis point -7.29214284 197.82259700 0.00000000  
Rotation angle (degrees) 104.28308140  
Shift along axis 9.79951295  
  

> view matrix models
> #4,0.10299,-0.98667,-0.12602,126.06,-0.67299,0.024168,-0.73925,116.2,0.73244,0.16095,-0.66153,199.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08313, steps = 100  
shifted from previous position = 4.38  
rotated from previous position = 7.29 degrees  
atoms outside contour = 1578, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.21423234 -0.96613610 -0.14382470 142.97748314  
-0.62256222 -0.02159414 -0.78227231 133.37616336  
0.75267575 0.25712785 -0.60610600 122.87148048  
Axis 0.73457974 -0.63358761 0.24281544  
Axis point 0.00000000 97.13027132 84.43943665  
Rotation angle (degrees) 134.96979416  
Shift along axis 50.35797059  
  

> view matrix models
> #4,0.53009,-0.57935,-0.61916,124.56,-0.62861,0.22156,-0.7455,115.14,0.56908,0.78439,-0.24674,201.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07802, steps = 104  
shifted from previous position = 3.98  
rotated from previous position = 17.9 degrees  
atoms outside contour = 1664, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.41005560 -0.77178476 -0.48600689 145.75457079  
-0.70317381 0.07184716 -0.70737867 135.52977459  
0.58086229 0.63181190 -0.51323750 122.38005186  
Axis 0.78151725 -0.62259748 0.04003959  
Axis point 0.00000000 82.06124357 114.22449458  
Rotation angle (degrees) 121.04207327  
Shift along axis 34.42926286  
  

> view matrix models
> #4,-0.05488,-0.41767,-0.90694,129.44,0.97275,0.18255,-0.14293,111.54,0.22526,-0.89007,0.39627,205.92

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07809, steps = 80  
shifted from previous position = 1.28  
rotated from previous position = 4.43 degrees  
atoms outside contour = 1675, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.01152083 -0.44914782 -0.89338318 148.15912847  
0.96021129 0.24435057 -0.13522972 128.09804463  
0.27903682 -0.85939457 0.42846169 125.02495229  
Axis -0.36738928 -0.59480177 0.71500767  
Axis point 45.15601745 194.44593494 0.00000000  
Rotation angle (degrees) 99.75027825  
Shift along axis -41.23121836  
  

> view matrix models
> #4,-0.20344,-0.34698,-0.91554,130.69,0.96438,0.090488,-0.24858,111.35,0.1691,-0.9335,0.31621,206.7

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08059, steps = 124  
shifted from previous position = 0.978  
rotated from previous position = 14.4 degrees  
atoms outside contour = 1616, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36670221 -0.44018219 -0.81961523 149.14561745  
0.92776241 -0.10750804 -0.35734987 128.80247952  
0.06918382 -0.89144919 0.44780792 125.16453124  
Axis -0.31114937 -0.51778622 0.79692126  
Axis point 55.63186156 156.65973911 0.00000000  
Rotation angle (degrees) 120.87729384  
Shift along axis -13.35243841  
  

> view matrix models
> #4,-0.41065,-0.40261,-0.81809,131.37,0.91148,-0.15785,-0.37984,111.57,0.023794,-0.90166,0.4318,206.22

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08059, steps = 60  
shifted from previous position = 0.0822  
rotated from previous position = 3.85 degrees  
atoms outside contour = 1611, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36684788 -0.43980622 -0.81975186 149.15089910  
0.92769379 -0.10727851 -0.35759692 128.80379218  
0.06933159 -0.89166238 0.44736039 125.15266571  
Axis -0.31116908 -0.51801755 0.79676322  
Axis point 55.65316873 156.67493546 0.00000000  
Rotation angle (degrees) 120.88943344  
Shift along axis -13.41673124  
  

> ui mousemode right "translate selected models"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08059, steps = 40  
shifted from previous position = 0.0163  
rotated from previous position = 0.0411 degrees  
atoms outside contour = 1617, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36663105 -0.44032154 -0.81957221 149.14443277  
0.92779283 -0.10756103 -0.35725494 128.80134527  
0.06915301 -0.89137398 0.44796238 125.16582122  
Axis -0.31114215 -0.51771208 0.79697225  
Axis point 55.62363602 156.65562806 0.00000000  
Rotation angle (degrees) 120.87153211  
Shift along axis -13.33344689  
  

> view matrix models
> #4,-0.36663,-0.44032,-0.81957,131.01,0.92779,-0.10756,-0.35725,116.42,0.069153,-0.89137,0.44796,211.77

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07766, steps = 80  
shifted from previous position = 1.79  
rotated from previous position = 8.02 degrees  
atoms outside contour = 1734, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.38002912 -0.47738227 -0.79226513 150.11524455  
0.90178247 -0.00061736 -0.43218976 133.43116672  
0.20583061 -0.87869551 0.43072958 129.45844249  
Axis -0.25369408 -0.56709456 0.78360901  
Axis point 47.87402498 169.51944286 0.00000000  
Rotation angle (degrees) 118.35664484  
Shift along axis -12.30663503  
  

> view matrix models
> #4,-0.38003,-0.47738,-0.79227,132.72,0.90178,-0.00061736,-0.43219,114.08,0.20583,-0.8787,0.43073,206.24

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08839, steps = 84  
shifted from previous position = 1.94  
rotated from previous position = 8.33 degrees  
atoms outside contour = 1548, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.38008233 -0.41451661 -0.82686964 149.98228682  
0.87761582 0.12070498 -0.46391894 132.85770868  
0.29210939 -0.90200127 0.31790850 126.70118259  
Axis -0.24826860 -0.63414416 0.73227309  
Axis point 49.50668198 179.80450089 0.00000000  
Rotation angle (degrees) 118.08197991  
Shift along axis -28.70696561  
  

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-17.998,0,1,0,-17.417,0,0,1,82.516

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08839, steps = 56  
shifted from previous position = 1.68  
rotated from previous position = 0.00886 degrees  
atoms outside contour = 1546, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.38019266 -0.41458376 -0.82678525 149.98607251  
0.87756403 0.12063605 -0.46403483 132.85691875  
0.29212141 -0.90197963 0.31795886 126.70216565  
Axis -0.24820033 -0.63412787 0.73231035  
Axis point 49.50363233 179.79663127 0.00000000  
Rotation angle (degrees) 118.08616586  
Shift along axis -28.68956005  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.45421,-0.69234,-0.56068,132.23,0.78504,-0.01349,-0.6193,116.5,0.4212,-0.72145,0.54964,207.72

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08644, steps = 204  
shifted from previous position = 1.58  
rotated from previous position = 18.8 degrees  
atoms outside contour = 1592, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.68583351 -0.46224676 -0.56210349 150.96068214  
0.67165269 -0.10464959 -0.73343788 133.31449808  
0.28020538 -0.88055460 0.38224148 126.77833123  
Axis -0.10359162 -0.59310827 0.79843056  
Axis point 47.90931269 153.31315511 0.00000000  
Rotation angle (degrees) 134.75855964  
Shift along axis 6.51550057  
  

> view matrix models
> #4,-0.57443,-0.38324,-0.7233,132.88,0.78663,-0.014077,-0.61727,115.01,0.22638,-0.92354,0.30955,209.76

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08811, steps = 68  
shifted from previous position = 1.16  
rotated from previous position = 7.64 degrees  
atoms outside contour = 1532, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.47204953 -0.36762716 -0.80126120 151.57618068  
0.84696847 0.06302576 -0.52789409 132.76566428  
0.24456830 -0.92783513 0.28161733 127.04499149  
Axis -0.24210168 -0.63308602 0.73524749  
Axis point 55.23107263 173.14930065 0.00000000  
Rotation angle (degrees) 124.31228890  
Shift along axis -27.33942364  
  

> view matrix models
> #4,-0.16813,-0.29633,-0.94017,132.92,0.94592,0.21993,-0.23848,113.84,0.27744,-0.92942,0.24333,209.58

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08615, steps = 88  
shifted from previous position = 1.4  
rotated from previous position = 8.69 degrees  
atoms outside contour = 1571, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.17610116 -0.43289418 -0.88407636 152.38297277  
0.92661443 0.23021366 -0.29730015 131.97219652  
0.33222596 -0.87155281 0.36058510 126.48551187  
Axis -0.30027248 -0.63599551 0.71087702  
Axis point 47.40191095 195.63752085 0.00000000  
Rotation angle (degrees) 107.01674646  
Shift along axis -39.77449400  
  

> view matrix models
> #4,-0.38041,-0.50945,-0.77185,134.85,0.87002,0.085887,-0.48548,115.63,0.31362,-0.8562,0.41056,208.87

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08811, steps = 76  
shifted from previous position = 1.32  
rotated from previous position = 9.81 degrees  
atoms outside contour = 1536, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.47239565 -0.36818003 -0.80080323 151.58220356  
0.84677347 0.06253541 -0.52826509 132.76206364  
0.24457522 -0.92764906 0.28222363 127.05263443  
Axis -0.24178746 -0.63287317 0.73553408  
Axis point 55.19543045 173.09757911 0.00000000  
Rotation angle (degrees) 124.32027245  
Shift along axis -27.22068078  
  

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08811, steps = 44  
shifted from previous position = 0.00291  
rotated from previous position = 0.00884 degrees  
atoms outside contour = 1535, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.47244743 -0.36809159 -0.80081334 151.58486007  
0.84672978 0.06262991 -0.52832393 132.76264404  
0.24462646 -0.92767779 0.28208477 127.05198730  
Axis -0.24177884 -0.63293546 0.73548331  
Axis point 55.20119508 173.10641432 0.00000000  
Rotation angle (degrees) 124.32360726  
Shift along axis -27.23558049  
  

> view matrix models
> #4,-0.48867,-0.23005,-0.84159,133.36,0.78241,0.31127,-0.53939,114.87,0.38605,-0.92206,0.02789,209.87

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08135, steps = 64  
shifted from previous position = 1.78  
rotated from previous position = 8.78 degrees  
atoms outside contour = 1614, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.58991801 -0.22830991 -0.77451361 152.99195175  
0.68302497 0.37049946 -0.62944979 132.58308492  
0.43066650 -0.90033590 -0.06262293 128.25448632  
Axis -0.17646762 -0.78510952 0.59368529  
Axis point 13.67663284 0.00000000 156.93818645  
Rotation angle (degrees) 129.86797582  
Shift along axis -54.94756639  
  

> view matrix models
> #4,-0.58676,-0.40679,-0.70017,135.27,0.80651,-0.21615,-0.55029,116.23,0.072515,-0.88758,0.45491,210.29

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07999, steps = 64  
shifted from previous position = 1.34  
rotated from previous position = 6.95 degrees  
atoms outside contour = 1658, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.54281216 -0.32989888 -0.77234817 153.94439034  
0.83967919 -0.23194441 -0.49106075 133.88656518  
-0.01714145 -0.91507842 0.40291147 127.12344959  
Axis -0.29135118 -0.51891791 0.80364090  
Axis point 65.75740777 148.37383972 0.00000000  
Rotation angle (degrees) 133.30820358  
Shift along axis -12.16641274  
  

> view matrix models
> #4,-0.56463,-0.2648,-0.78172,135.85,0.11456,-0.96311,0.2435,118.47,-0.81736,0.047931,0.57413,208.71

> view matrix models
> #4,-0.18576,-0.5249,-0.83064,135.66,-0.73096,-0.49112,0.47382,118.87,-0.65665,0.69518,-0.29245,208.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07389, steps = 124  
shifted from previous position = 2.83  
rotated from previous position = 7.94 degrees  
atoms outside contour = 1798, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.16959417 -0.54924216 -0.81827310 152.59893707  
-0.63424927 -0.57467146 0.51718525 138.73910164  
-0.75429814 0.60670071 -0.25089551 127.19740783  
Axis 0.64381257 -0.46012027 -0.61138753  
Axis point 0.00000000 121.17787391 139.26605519  
Rotation angle (degrees) 176.01359231  
Shift along axis -43.35846875  
  

> view matrix models
> #4,-0.7803,-0.53522,-0.32354,134.88,0.59866,-0.78889,-0.13879,120.32,-0.18095,-0.30199,0.93598,207.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07461, steps = 112  
shifted from previous position = 4.98  
rotated from previous position = 6.62 degrees  
atoms outside contour = 1778, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.70665306 -0.59999736 -0.37502616 152.43284211  
0.66763814 -0.74093730 -0.07260324 136.11965129  
-0.23430911 -0.30168707 0.92416673 120.18232427  
Axis -0.17678514 -0.10859205 0.97824066  
Axis point 59.94030134 105.90471682 0.00000000  
Rotation angle (degrees) 139.61534095  
Shift along axis 75.83786340  
  

> view matrix models
> #4,-0.55752,-0.37251,-0.74189,134.41,0.37271,-0.91086,0.17727,119.3,-0.74179,-0.17768,0.64666,204.53

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08186, steps = 104  
shifted from previous position = 5  
rotated from previous position = 11.4 degrees  
atoms outside contour = 1597, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67685327 -0.36325408 -0.64024692 150.20058390  
0.26891768 -0.93166517 0.24430163 132.89172198  
-0.68523932 -0.00681736 0.72828606 119.23853663  
Axis -0.36836722 0.06599949 0.92733471  
Axis point 86.59475929 78.66454919 0.00000000  
Rotation angle (degrees) 160.07107809  
Shift along axis 64.01584824  
  

> select subtract #4

3 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,-0.84051,-0.1087,-0.53078,131.65,-0.16297,-0.88357,0.43902,116,-0.5167,0.4555,0.72494,200.02

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07662, steps = 96  
shifted from previous position = 2.21  
rotated from previous position = 11.3 degrees  
atoms outside contour = 1801, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.87971247 0.04607954 -0.47326804 149.71217451  
-0.21275704 -0.92825192 0.30509477 135.22876296  
-0.42525334 0.36908679 0.82639853 118.98331291  
Axis 0.23620404 -0.17722940 -0.95540431  
Axis point 93.73411607 50.38706670 0.00000000  
Rotation angle (degrees) 172.21482673  
Shift along axis -102.28106243  
  

> view matrix models
> #4,-0.54308,-0.38008,-0.74873,132.73,0.40213,-0.90051,0.16545,116.42,-0.73713,-0.21123,0.64189,204.48

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08163, steps = 100  
shifted from previous position = 5.42  
rotated from previous position = 13.7 degrees  
atoms outside contour = 1595, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.42833202 -0.52875217 -0.73277065 146.05327318  
0.37497042 -0.84181726 0.38825364 131.86066451  
-0.82214893 -0.10846585 0.55884371 119.84457523  
Axis -0.47987557 0.08634744 0.87307706  
Axis point 85.53417498 86.85299280 0.00000000  
Rotation angle (degrees) 148.83192641  
Shift along axis 45.93198277  
  

> view matrix models
> #4,-0.057106,-0.55058,-0.83282,127.36,0.76724,-0.55796,0.31626,112.77,-0.63881,-0.62092,0.4543,203.56

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07805, steps = 80  
shifted from previous position = 3.64  
rotated from previous position = 4.65 degrees  
atoms outside contour = 1631, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.11429484 -0.51810133 -0.84764834 143.57534459  
0.73185868 -0.62090188 0.28082686 128.02888338  
-0.67180322 -0.58826173 0.45014284 123.01016231  
Axis -0.56709543 -0.11474200 0.81562065  
Axis point 77.79863296 114.41193309 0.00000000  
Rotation angle (degrees) 129.98050643  
Shift along axis 4.21841774  
  

> view matrix models
> #4,-0.8891,-0.10298,-0.44598,125.46,-0.024035,-0.96252,0.27016,113.68,-0.45709,0.25092,0.85329,201.49

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07939, steps = 72  
shifted from previous position = 2.24  
rotated from previous position = 9.54 degrees  
atoms outside contour = 1668, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.86700704 -0.26175222 -0.42401010 141.81514986  
0.09718026 -0.92340232 0.37132757 129.52357829  
-0.48872772 0.28073821 0.82603346 118.39502820  
Axis -0.24105594 0.17221191 0.95510999  
Axis point 80.28541527 62.33632000 0.00000000  
Rotation angle (degrees) 169.16967880  
Shift along axis 101.20039307  
  

> view matrix models
> #4,-0.40892,-0.3367,-0.84819,123.93,0.2046,-0.93961,0.27436,112.12,-0.88934,-0.061346,0.45311,204

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08342, steps = 76  
shifted from previous position = 1.33  
rotated from previous position = 8.09 degrees  
atoms outside contour = 1526, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36616664 -0.39151101 -0.84418074 142.68292479  
0.11621750 -0.91932300 0.37595042 128.43639721  
-0.92326349 0.03955193 0.38212585 121.90255697  
Axis -0.54772755 0.12876337 0.82668889  
Axis point 99.98229173 70.34431160 0.00000000  
Rotation angle (degrees) 162.11631722  
Shift along axis 39.16202373  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.36617,-0.39151,-0.84418,124.62,0.11622,-0.91932,0.37595,83.146,-0.92326,0.039552,0.38213,195.74

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06775, steps = 188  
shifted from previous position = 18.1  
rotated from previous position = 24.9 degrees  
atoms outside contour = 1856, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.30764692 -0.73367126 -0.60587115 138.90686586  
0.16965734 -0.66884642 0.72378233 112.91141995  
-0.93625304 0.11987892 0.33024126 124.43463284  
Axis -0.53173738 0.29090148 0.79538147  
Axis point 92.24051376 66.93299313 0.00000000  
Rotation angle (degrees) 145.39895797  
Shift along axis 57.95712828  
  

> view matrix models
> #4,-0.30765,-0.73367,-0.60587,124.81,0.16966,-0.66885,0.72378,52.954,-0.93625,0.11988,0.33024,196.59

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05195, steps = 220  
shifted from previous position = 19.4  
rotated from previous position = 33.6 degrees  
atoms outside contour = 2117, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.12743349 -0.67608781 -0.72571756 130.54716315  
0.50636231 -0.58480075 0.63372336 80.76933181  
-0.85285281 -0.44823360 0.26782219 126.18237862  
Axis -0.67294749 0.07907463 0.73545148  
Axis point 95.63025807 80.95431923 0.00000000  
Rotation angle (degrees) 126.49641847  
Shift along axis 11.33643563  
  

> view matrix models
> #4,0.12743,-0.67609,-0.72572,115.67,0.50636,-0.5848,0.63372,49.422,-0.85285,-0.44823,0.26782,206.64

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05031, steps = 152  
shifted from previous position = 9.27  
rotated from previous position = 8.89 degrees  
atoms outside contour = 2205, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.21446370 -0.70041904 -0.68074848 129.31626110  
0.38882939 -0.57813433 0.71733702 74.72407831  
-0.89600057 -0.41853777 0.14835468 127.16013177  
Axis -0.71510731 0.13551524 0.68575298  
Axis point 0.00000000 92.38810121 100.00074155  
Rotation angle (degrees) 127.42035131  
Shift along axis 4.85168670  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.21446,-0.70042,-0.68075,109.5,0.38883,-0.57813,0.71734,52.535,-0.896,-0.41854,0.14835,206.89

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.69216,-0.54149,-0.47717,111.01,0.030805,-0.68271,0.73004,53.782,-0.72108,0.49061,0.48922,202.94

> view matrix models
> #4,-0.9626,-0.1638,-0.21582,109.99,-0.05656,-0.65754,0.7513,53.896,-0.26497,0.7354,0.62368,200.63

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05019, steps = 124  
shifted from previous position = 9.01  
rotated from previous position = 11.3 degrees  
atoms outside contour = 2190, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93094925 -0.33551759 -0.14408833 129.37661847  
0.12040066 -0.65458693 0.74633748 78.29705152  
-0.34472769 0.67745398 0.64978375 123.39467521  
Axis -0.13698497 0.39900090 0.90666057  
Axis point 72.01850762 22.32303235 0.00000000  
Rotation angle (degrees) 165.43801771  
Shift along axis 125.39502884  
  

> view matrix models
> #4,-0.77273,0.62593,0.10536,107.58,-0.63131,-0.77511,-0.025298,65.437,0.065834,-0.086066,0.99411,205.94

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05262, steps = 128  
shifted from previous position = 8.04  
rotated from previous position = 15.4 degrees  
atoms outside contour = 2049, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.64153320 0.76648487 -0.03059559 127.90300440  
-0.76422524 -0.63517742 0.11184556 89.81977924  
0.06629430 0.09513456 0.99325449 125.26596186  
Axis -0.01089470 -0.06316718 -0.99794349  
Axis point 82.33789840 11.34570714 0.00000000  
Rotation angle (degrees) 129.92079810  
Shift along axis -132.07547863  
  

> ui mousemode right "move picked models"

> view matrix models
> #4,-0.64153,0.76648,-0.030596,111.16,-0.76423,-0.63518,0.11185,59.428,0.066294,0.095135,0.99325,204.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05111, steps = 148  
shifted from previous position = 7.43  
rotated from previous position = 13.9 degrees  
atoms outside contour = 2141, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56742203 0.78770176 -0.23991284 129.44951177  
-0.81256627 -0.58280994 0.00828463 83.84783013  
-0.13329777 0.19964596 0.97075908 125.41221468  
Axis 0.11847594 -0.06600770 -0.99076053  
Axis point 91.78261393 1.08269426 0.00000000  
Rotation angle (degrees) 126.13830774  
Shift along axis -114.45142287  
  

> view matrix models #1,1,0,0,-18.423,0,1,0,-23.474,0,0,1,80.335

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05515, steps = 108  
shifted from previous position = 5.73  
rotated from previous position = 10.7 degrees  
atoms outside contour = 2001, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.61165950 0.72456021 -0.31762424 128.19365619  
-0.73382275 -0.66963617 -0.11441842 93.66566503  
-0.29559571 0.16309478 0.94128809 124.03562903  
Axis 0.18691340 -0.01483687 -0.98226435  
Axis point 96.75907700 12.69071741 0.00000000  
Rotation angle (degrees) 132.06735742  
Shift along axis -99.26436883  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.45974,0.58617,0.66712,107,-0.67736,-0.71727,0.16344,69.397,0.57431,-0.37674,0.7268,204.05

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05488, steps = 96  
shifted from previous position = 4.16  
rotated from previous position = 11 degrees  
atoms outside contour = 2012, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.32387668 0.70069588 0.63571156 127.00553967  
-0.70932137 -0.62447991 0.32693735 91.88009848  
0.62607275 -0.34503641 0.69927304 127.18622736  
Axis -0.43020561 0.00617088 -0.90270984  
Axis point 57.93937912 31.90228433 0.00000000  
Rotation angle (degrees) 128.64856290  
Shift along axis -168.88377313  
  

> view matrix models
> #4,-0.64618,0.50995,-0.56781,113.34,-0.62682,-0.77904,0.013676,69.475,-0.43537,0.36475,0.82305,208.15

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0543, steps = 84  
shifted from previous position = 3.8  
rotated from previous position = 12.5 degrees  
atoms outside contour = 2024, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72059480 0.56028340 -0.40844295 131.15273291  
-0.57958685 -0.81007064 -0.08868281 91.49635500  
-0.38055514 0.17282379 0.90846558 124.51281622  
Axis 0.22354522 -0.02383949 -0.97440198  
Axis point 94.64982755 19.00100466 0.00000000  
Rotation angle (degrees) 144.20353699  
Shift along axis -94.18819473  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.72059,0.56028,-0.40844,112.64,-0.57959,-0.81007,-0.088683,73.067,-0.38056,0.17282,0.90847,206.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05844, steps = 136  
shifted from previous position = 7.12  
rotated from previous position = 18.4 degrees  
atoms outside contour = 1978, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.58609421 0.69389806 -0.41832890 130.53384903  
-0.57424511 -0.71997632 -0.38971355 102.68903501  
-0.57160838 0.01181447 0.82044152 122.68575161  
Axis 0.29987278 0.11447356 -0.94708612  
Axis point 107.03142596 28.31512325 0.00000000  
Rotation angle (degrees) 137.97172327  
Shift along axis -65.29524481  
  

> view matrix models
> #4,-0.58609,0.6939,-0.41833,113.93,-0.57425,-0.71998,-0.38971,79.084,-0.57161,0.011814,0.82044,202.6

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05839, steps = 108  
shifted from previous position = 1.53  
rotated from previous position = 4.48 degrees  
atoms outside contour = 1975, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.54876901 0.68350195 -0.48132906 131.23611777  
-0.58341537 -0.72549909 -0.36507202 102.28477510  
-0.59873123 0.08047456 0.79689696 123.14460624  
Axis 0.33049957 0.08708712 -0.93977969  
Axis point 109.50861216 25.45422325 0.00000000  
Rotation angle (degrees) 137.61956636  
Shift along axis -63.44763399  
  

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-20.876,0,1,0,-23.227,0,0,1,82.175

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05839, steps = 132  
shifted from previous position = 3.08  
rotated from previous position = 0.00225 degrees  
atoms outside contour = 1974, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.54876756 0.68350764 -0.48132262 131.23534380  
-0.58339649 -0.72549716 -0.36510602 102.28493362  
-0.59875095 0.08044359 0.79688527 123.14425687  
Axis 0.33050405 0.08710711 -0.93977626  
Axis point 109.50865181 25.45610495 0.00000000  
Rotation angle (degrees) 137.61991968  
Shift along axis -63.44449253  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.73167,0.36006,-0.57881,112.03,-0.39278,-0.91667,-0.073726,78.252,-0.55712,0.1734,0.81212,204.9

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.05941, steps = 92  
shifted from previous position = 2.24  
rotated from previous position = 5.55 degrees  
atoms outside contour = 1964, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.71454367 0.33702569 -0.61305875 134.50640940  
-0.42954016 -0.90303796 0.00420549 102.99755817  
-0.55219797 0.26633836 0.79002612 122.75992768  
Axis 0.32265327 -0.07491213 -0.94354811  
Axis point 99.15224133 28.58783032 0.00000000  
Rotation angle (degrees) 156.03274377  
Shift along axis -80.14673145  
  

> view matrix models
> #4,-0.79066,-0.0789,-0.60715,114.98,0.19445,-0.97268,-0.12682,78.597,-0.58056,-0.21833,0.7844,206.37

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06814, steps = 148  
shifted from previous position = 8.33  
rotated from previous position = 19.8 degrees  
atoms outside contour = 1796, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.88702550 -0.25712521 -0.38350017 137.20515090  
0.35602215 -0.90976089 -0.21350256 109.71421877  
-0.29399657 -0.32591677 0.89852339 122.64215618  
Axis -0.17850329 -0.14212338 0.97362083  
Axis point 69.80765924 76.36603324 0.00000000  
Rotation angle (degrees) 161.64643309  
Shift along axis 79.32243269  
  

> view matrix models
> #4,-0.92946,-0.13943,-0.34156,116,0.029931,-0.95128,0.30688,86.064,-0.3677,0.27501,0.88835,203.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07985, steps = 216  
shifted from previous position = 15.4  
rotated from previous position = 30 degrees  
atoms outside contour = 1640, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.78300256 -0.59998242 -0.16409778 136.29375818  
0.50688350 -0.76837209 0.39073451 123.09779864  
-0.36052199 0.22276766 0.90575850 121.70235277  
Axis -0.14777506 0.17281148 0.97380631  
Axis point 60.98495723 75.39917350 0.00000000  
Rotation angle (degrees) 145.36688874  
Shift along axis 119.64641344  
  

> view matrix models
> #4,-0.86233,-0.43622,-0.25709,115.44,0.085083,-0.62536,0.77569,99.577,-0.49914,0.64703,0.57638,204

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07738, steps = 160  
shifted from previous position = 2.81  
rotated from previous position = 15.9 degrees  
atoms outside contour = 1646, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.76941398 -0.38694279 -0.50821000 139.34638506  
-0.06390792 -0.74500566 0.66398971 123.88464134  
-0.63554536 0.54336161 0.54848907 122.35273046  
Axis -0.32816598 0.34641292 0.87880895  
Axis point 87.89771111 46.98780096 0.00000000  
Rotation angle (degrees) 169.40932960  
Shift along axis 104.71117209  
  

> view matrix models
> #4,-0.24652,0.28989,-0.92477,116.3,-0.90984,-0.39789,0.11781,103.55,-0.3338,0.87043,0.36184,203.3

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08421, steps = 80  
shifted from previous position = 3.48  
rotated from previous position = 13.1 degrees  
atoms outside contour = 1629, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.32287446 0.29822630 -0.89822779 138.60247692  
-0.80197722 -0.59017626 0.09232834 128.63538030  
-0.50257798 0.75016868 0.42972354 124.36819790  
Axis 0.49036060 -0.29492122 -0.82010241  
Axis point 131.70364145 1.12411036 0.00000000  
Rotation angle (degrees) 137.87332159  
Shift along axis -71.96676837  
  

> view matrix models
> #4,-0.6444,0.24018,-0.72599,118.3,-0.74441,0.020181,0.66742,101.96,0.17495,0.97052,0.16579,204.79

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08473, steps = 100  
shifted from previous position = 3.87  
rotated from previous position = 15.6 degrees  
atoms outside contour = 1527, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.65519802 -0.01730140 -0.75525904 139.33911969  
-0.75352320 -0.05652296 0.65498698 126.86810130  
-0.05402167 0.99825138 0.02399672 119.78801021  
Axis 0.31987509 -0.65345654 -0.68605720  
Axis point 107.80008814 -31.34038933 0.00000000  
Rotation angle (degrees) 147.55022659  
Shift along axis -120.51310315  
  

> view matrix models
> #4,-0.87124,0.19133,-0.45204,117.64,-0.16184,0.75745,0.63252,99.807,0.46341,0.62423,-0.62895,203.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08166, steps = 124  
shifted from previous position = 6.68  
rotated from previous position = 13 degrees  
atoms outside contour = 1621, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95888267 0.11162750 -0.26092783 132.44910591  
-0.10086386 0.72533299 0.68096882 125.69433193  
0.26527441 0.67928739 -0.68425005 122.26327218  
Axis -0.00296293 -0.92724596 -0.37444112  
Axis point 61.23316229 0.00000000 46.06020748  
Rotation angle (degrees) 163.51617280  
Shift along axis -162.72239593  
  

> view matrix models
> #4,-0.89072,-0.038431,-0.45293,112.33,-0.42259,0.43706,0.79398,103.85,0.16744,0.89861,-0.40554,203.33

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08323, steps = 224  
shifted from previous position = 7.33  
rotated from previous position = 24.5 degrees  
atoms outside contour = 1563, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72259578 -0.40245193 -0.56203895 139.76401488  
-0.68266144 0.28752964 0.67178871 123.88005897  
-0.10875981 0.86911400 -0.48250612 122.30124139  
Axis 0.34724625 -0.79766500 -0.49310303  
Axis point 90.68442090 0.00000000 39.05985133  
Rotation angle (degrees) 163.49322243  
Shift along axis -110.58936895  
  

> view matrix models
> #4,-0.86423,-0.30285,-0.40173,118.56,-0.49343,0.66599,0.55945,99.391,0.098117,0.68172,-0.72501,205.09

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.078, steps = 136  
shifted from previous position = 4.75  
rotated from previous position = 12.4 degrees  
atoms outside contour = 1663, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.90652613 -0.09289267 -0.41180253 135.80579758  
-0.36047986 0.67799457 0.64060724 125.56184840  
0.21969216 0.72917372 -0.64810573 122.35105165  
Axis 0.12807072 -0.91316693 -0.38694192  
Axis point 70.22263820 0.00000000 49.64678887  
Rotation angle (degrees) 159.77108543  
Shift along axis -144.60893149  
  

> view matrix models
> #4,-0.60244,-0.63326,-0.48584,115.79,-0.79733,0.50521,0.33018,104.89,0.036362,0.5863,-0.80928,205.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08261, steps = 104  
shifted from previous position = 1.92  
rotated from previous position = 6.6 degrees  
atoms outside contour = 1606, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.55557410 -0.66857103 -0.49431791 135.41396998  
-0.82978871 0.40807283 0.38069314 127.14012209  
-0.05280270 0.62168267 -0.78148739 122.84937406  
Axis 0.45624058 -0.83587514 -0.30521677  
Axis point 94.53813969 0.00000000 52.11011474  
Rotation angle (degrees) 164.68630659  
Shift along axis -81.98760891  
  

> view matrix models
> #4,-0.15843,-0.98734,-0.0074431,112.97,-0.85546,0.1335,0.50037,104.41,-0.49305,0.085643,-0.86578,207.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08152, steps = 100  
shifted from previous position = 1.63  
rotated from previous position = 4.42 degrees  
atoms outside contour = 1619, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.13379071 -0.99005367 -0.04351763 134.58712560  
-0.89062137 0.10086356 0.44341867 128.03022664  
-0.43461894 0.09808303 -0.89525756 127.16444837  
Axis -0.65018507 0.73635097 0.18720742  
Axis point 134.96745261 0.00000000 33.12542591  
Rotation angle (degrees) 164.59934241  
Shift along axis 30.57476975  
  

> view matrix models
> #4,0.39695,-0.87756,0.26891,111.06,-0.76432,-0.15384,0.62621,104.65,-0.50817,-0.45411,-0.73181,210.62

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08083, steps = 84  
shifted from previous position = 2.8  
rotated from previous position = 2.46 degrees  
atoms outside contour = 1600, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40155854 -0.88070824 0.25120455 129.68159299  
-0.77795390 -0.18328610 0.60099412 128.65372074  
-0.48325818 -0.43675988 -0.75875051 126.92750673  
Axis -0.81359888 0.57581859 0.08055938  
Axis point 0.00000000 138.69764395 38.69678559  
Rotation angle (degrees) 140.37535866  
Shift along axis -21.20239307  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.40156,-0.88071,0.2512,111.31,-0.77795,-0.18329,0.60099,104.55,-0.48326,-0.43676,-0.75875,204.73

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08314, steps = 144  
shifted from previous position = 3.22  
rotated from previous position = 13.4 degrees  
atoms outside contour = 1539, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.19709647 -0.96417949 0.17751308 131.33656413  
-0.81890803 -0.06236177 0.57052664 127.57866396  
-0.53902006 -0.25781567 -0.80186561 125.16673430  
Axis -0.74973866 0.64853936 0.13148626  
Axis point 0.00000000 145.72358277 48.56133853  
Rotation angle (degrees) 146.46675764  
Shift along axis 0.72939109  
  

> view matrix models
> #4,0.1971,-0.96418,0.17751,113.54,-0.81891,-0.062362,0.57053,102.9,-0.53902,-0.25782,-0.80187,202.44

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08131, steps = 76  
shifted from previous position = 3.68  
rotated from previous position = 9.23 degrees  
atoms outside contour = 1608, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.10167459 -0.99334567 0.05409855 134.33954956  
-0.80520446 -0.05023818 0.59086538 128.42990113  
-0.58421576 -0.10363639 -0.80495431 122.76018104  
Axis -0.72204027 0.66362485 0.19560142  
Axis point 0.00000000 147.30962147 58.22797811  
Rotation angle (degrees) 151.25383519  
Shift along axis 12.24277501  
  

> view matrix models
> #4,0.10167,-0.99335,0.054099,112.18,-0.8052,-0.050238,0.59087,107.37,-0.58422,-0.10364,-0.80495,204.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08131, steps = 52  
shifted from previous position = 2.54  
rotated from previous position = 0.0182 degrees  
atoms outside contour = 1607, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.10195702 -0.99332447 0.05395621 134.34904604  
-0.80517880 -0.05054977 0.59087378 128.41624068  
-0.58420191 -0.10368812 -0.80495770 122.75397649  
Axis -0.72214734 0.66350340 0.19561812  
Axis point 0.00000000 147.28246094 58.22653988  
Rotation angle (degrees) 151.25577450  
Shift along axis 12.19770812  
  

> view matrix models
> #4,0.10196,-0.99332,0.053956,111.26,-0.80518,-0.05055,0.59087,107.17,-0.5842,-0.10369,-0.80496,207.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08336, steps = 68  
shifted from previous position = 1.48  
rotated from previous position = 8.22 degrees  
atoms outside contour = 1574, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.18789959 -0.98167802 0.03165470 132.04596865  
-0.72330095 -0.11649711 0.68063512 129.54143262  
-0.66447685 -0.15078693 -0.73193840 126.50920598  
Axis -0.74585136 0.62448508 0.23178467  
Axis point 0.00000000 145.32157515 58.82258898  
Rotation angle (degrees) 146.12627360  
Shift along axis 11.73292154  
  

> view matrix models
> #4,0.1879,-0.98168,0.031655,109.97,-0.7233,-0.1165,0.68064,108.34,-0.66448,-0.15079,-0.73194,208.71

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08336, steps = 48  
shifted from previous position = 2.36  
rotated from previous position = 0.00536 degrees  
atoms outside contour = 1575, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.18786079 -0.98168786 0.03157949 132.04734411  
-0.72327107 -0.11651285 0.68066417 129.53486944  
-0.66452034 -0.15071064 -0.73191463 126.51731987  
Axis -0.74583965 0.62448230 0.23182984  
Axis point 0.00000000 145.32001157 58.83382322  
Rotation angle (degrees) 146.12785506  
Shift along axis 11.73657819  
  

> view matrix models
> #4,0.18786,-0.98169,0.031579,109,-0.72327,-0.11651,0.68066,107.6,-0.66452,-0.15071,-0.73191,211.81

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08336, steps = 124  
shifted from previous position = 2.64  
rotated from previous position = 7.75 degrees  
atoms outside contour = 1590, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15139786 -0.98535211 -0.07848503 131.27557402  
-0.76065102 -0.16684276 0.62735438 128.81541088  
-0.63125962 -0.03528039 -0.77476873 128.71266287  
Axis -0.74311108 0.61990850 0.25199081  
Axis point 0.00000000 138.95025113 67.66918160  
Rotation angle (degrees) 153.52215331  
Shift along axis 14.73584223  
  

> view matrix models
> #4,0.1514,-0.98535,-0.078485,111.24,-0.76065,-0.16684,0.62735,105.63,-0.63126,-0.03528,-0.77477,208.99

> view matrix models
> #4,0.1514,-0.98535,-0.078485,111.86,-0.76065,-0.16684,0.62735,105.68,-0.63126,-0.03528,-0.77477,207.55

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08293, steps = 60  
shifted from previous position = 2.67  
rotated from previous position = 2.59 degrees  
atoms outside contour = 1600, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13978570 -0.98596294 -0.09130738 134.56125173  
-0.73361924 -0.16505721 0.65921084 128.76045637  
-0.66502840 -0.02516340 -0.74639402 123.36562900  
Axis -0.73746485 0.61822767 0.27191937  
Axis point 0.00000000 140.73122261 66.44589162  
Rotation angle (degrees) 152.35417673  
Shift along axis 13.91458681  
  

> view matrix models
> #4,0.13979,-0.98596,-0.091307,111.81,-0.73362,-0.16506,0.65921,104.3,-0.66503,-0.025163,-0.74639,211.27

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08336, steps = 80  
shifted from previous position = 1.83  
rotated from previous position = 2.59 degrees  
atoms outside contour = 1593, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15135929 -0.98538435 -0.07815403 131.28133938  
-0.76057921 -0.16659783 0.62750652 128.81956500  
-0.63135539 -0.03553661 -0.77467898 128.70532116  
Axis -0.74307385 0.61997395 0.25193960  
Axis point 0.00000000 138.97781419 67.64782890  
Rotation angle (degrees) 153.50313266  
Shift along axis 14.73901103  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.51852,-0.85435,0.034965,108.71,-0.75489,-0.43818,0.48799,106.72,-0.40159,-0.27942,-0.87215,211.19

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08062, steps = 104  
shifted from previous position = 2.86  
rotated from previous position = 8.48 degrees  
atoms outside contour = 1595, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40631411 -0.91371967 -0.00501996 129.00945223  
-0.82444778 -0.36897414 0.42911997 128.40767725  
-0.39394759 -0.17021880 -0.90323356 126.73890299  
Axis -0.83238193 0.54015584 0.12398383  
Axis point -0.00000000 120.55161440 57.26307472  
Rotation angle (degrees) 158.89892691  
Shift along axis -22.31140680  
  

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> view matrix models
> #1,0.99646,0.031622,-0.077901,-16.07,-0.035033,0.99847,-0.042823,-14.711,0.076428,0.0454,0.99604,68.817

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08403, steps = 96  
shifted from previous position = 1.26  
rotated from previous position = 10.3 degrees  
atoms outside contour = 1574, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.28955641 -0.94788142 -0.13295825 130.27092489  
-0.90679446 -0.31612686 0.27890432 130.01453999  
-0.30639990 0.03980727 -0.95107018 125.54698842  
Axis -0.80173649 0.58158183 0.13777217  
Axis point -0.00000000 118.20131844 67.57370767  
Rotation angle (degrees) 171.42453112  
Shift along axis -11.53197997  
  

> view matrix models
> #1,0.97856,0.15642,-0.13402,-21.853,-0.1331,0.97673,0.16821,-22.169,0.15721,-0.14676,0.9766,82.173

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08298, steps = 80  
shifted from previous position = 2.58  
rotated from previous position = 3.23 degrees  
atoms outside contour = 1603, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.38874714 -0.88999941 -0.23827865 131.71342333  
-0.79132357 -0.45498750 0.40840346 125.33886991  
-0.47189264 0.02978983 -0.88115260 126.68582309  
Axis -0.83084323 0.51265087 0.21653777  
Axis point 0.00000000 112.37289788 71.16702933  
Rotation angle (degrees) 166.82953273  
Shift along axis -17.74585932  
  

> view matrix models
> #1,0.99317,0.065671,-0.096394,-17.514,-0.064413,0.99779,0.016111,-17.146,0.097239,-0.0097924,0.99521,72.453

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08153, steps = 68  
shifted from previous position = 0.597  
rotated from previous position = 5.05 degrees  
atoms outside contour = 1542, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42008453 -0.88630751 -0.19490509 130.95854915  
-0.84029865 -0.46100721 0.28525521 128.10895757  
-0.34267649 0.04394718 -0.93842499 124.89633509  
Axis -0.84174665 0.51546598 0.16049115  
Axis point 0.00000000 109.66295693 68.91786518  
Rotation angle (degrees) 171.75896984  
Shift along axis -24.15335356  
  

> view matrix models
> #1,0.99865,-0.011217,-0.050767,-14.417,0.0051225,0.99293,-0.11862,-11.161,0.051738,0.1182,0.99164,64.252

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08351, steps = 84  
shifted from previous position = 2.71  
rotated from previous position = 0.769 degrees  
atoms outside contour = 1577, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.37974695 -0.91382099 -0.14395642 133.64793060  
-0.90141481 -0.40050082 0.16447012 131.45406343  
-0.20795092 0.06730742 -0.97582075 122.75493964  
Axis -0.83042620 0.54694554 0.10603258  
Axis point 0.00000000 111.95198971 67.34136324  
Rotation angle (degrees) 176.64618414  
Shift along axis -26.07050529  
  

> view matrix models
> #1,0.99603,0.036925,-0.080952,-16.288,-0.03975,0.99865,-0.033571,-15.111,0.079603,0.036656,0.99615,69.383

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08393, steps = 60  
shifted from previous position = 1.51  
rotated from previous position = 4.26 degrees  
atoms outside contour = 1537, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.35789307 -0.92016669 -0.15876337 134.49890441  
-0.89795195 -0.38579139 0.21177180 130.43320348  
-0.25611490 0.06677022 -0.96433754 122.92372695  
Axis -0.82360315 0.55295277 0.12617883  
Axis point 0.00000000 113.73586688 67.93011093  
Rotation angle (degrees) 174.94978492  
Shift along axis -23.13994841  
  

> view matrix models
> #1,0.99525,0.067034,-0.070653,-20.483,-0.070365,0.99647,-0.045747,-10.111,0.067337,0.050501,0.99645,69.278

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08393, steps = 64  
shifted from previous position = 1.15  
rotated from previous position = 2 degrees  
atoms outside contour = 1536, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.35792386 -0.92016112 -0.15872627 134.49924705  
-0.89793175 -0.38581479 0.21181481 130.43298187  
-0.25614270 0.06671178 -0.96433420 122.92301196  
Axis -0.82361198 0.55294048 0.12617499  
Axis point 0.00000000 113.73666832 67.92670249  
Rotation angle (degrees) 174.94629681  
Shift along axis -23.14370713  
  

> view matrix models
> #1,0.98796,0.15462,-0.0044895,-35.736,-0.15455,0.98544,-0.070935,3.3547,-0.0065438,0.070775,0.99747,75.54

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0818, steps = 132  
shifted from previous position = 2.63  
rotated from previous position = 8.04 degrees  
atoms outside contour = 1593, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.38103516 -0.91436898 -0.13689988 128.57268177  
-0.91581310 -0.39358976 0.07983404 132.17259226  
-0.12688016 0.09495513 -0.98736262 123.92284374  
Axis 0.83097005 -0.55062751 -0.07936072  
Axis point 0.00000000 108.34001157 68.49932653  
Rotation angle (degrees) 179.47868964  
Shift along axis 24.22757579  
  

> view matrix models
> #1,0.99368,-0.024224,-0.10957,-6.5405,0.023196,0.99967,-0.010648,-24.81,0.10979,0.0080388,0.99392,69.203

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08447, steps = 88  
shifted from previous position = 3.3  
rotated from previous position = 3.74 degrees  
atoms outside contour = 1530, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15560475 -0.96882505 -0.19278274 131.97625658  
-0.97475122 -0.18223349 0.12903880 128.11077297  
-0.16014749 0.16783616 -0.97271980 122.68783195  
Axis 0.76008790 -0.63936449 -0.11610096  
Axis point 0.00000000 118.52863601 72.52129394  
Rotation angle (degrees) 178.53755949  
Shift along axis 4.15990225  
  

> view matrix models
> #1,0.99648,-0.0049688,-0.083632,-11.546,0.0039374,0.99991,-0.012493,-22.421,0.083687,0.01212,0.99642,71.534

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08447, steps = 88  
shifted from previous position = 0.992  
rotated from previous position = 1.88 degrees  
atoms outside contour = 1528, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15535013 -0.96887584 -0.19273282 131.97717895  
-0.97474578 -0.18202648 0.12937167 128.11150726  
-0.16042757 0.16776760 -0.97268547 122.68575531  
Axis 0.76000506 -0.63944698 -0.11618895  
Axis point 0.00000000 118.55312889 72.51777774  
Rotation angle (degrees) 178.55253700  
Shift along axis 4.12807866  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.99648,-0.0049688,-0.083632,-11.895,0.0039374,0.99991,-0.012493,-24.56,0.083687,0.01212,0.99642,73.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08447, steps = 80  
shifted from previous position = 2.76  
rotated from previous position = 0.0216 degrees  
atoms outside contour = 1526, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15568734 -0.96883339 -0.19267411 131.98984808  
-0.97471884 -0.18231975 0.12916151 128.10138931  
-0.16026428 0.16769427 -0.97272503 122.68689181  
Axis 0.76011569 -0.63933178 -0.11609914  
Axis point 0.00000000 118.53190591 72.51381662  
Rotation angle (degrees) 178.54758907  
Shift along axis 4.18442233  
  

> view matrix models
> #1,0.99648,-0.0049688,-0.083632,-12.616,0.0039374,0.99991,-0.012493,-26.912,0.083687,0.01212,0.99642,75.672

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08447, steps = 68  
shifted from previous position = 3.47  
rotated from previous position = 0.0114 degrees  
atoms outside contour = 1527, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15563693 -0.96881747 -0.19279483 131.97670490  
-0.97474746 -0.18226508 0.12902262 128.10821217  
-0.16013913 0.16784559 -0.97271955 122.68775147  
Axis 0.76009843 -0.63935204 -0.11610061  
Axis point 0.00000000 118.52503613 72.52181712  
Rotation angle (degrees) 178.53661422  
Shift along axis 4.16491743  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.99302,0.045586,-0.10876,-15.157,-0.037714,0.99659,0.073369,-30.341,0.11173,-0.068756,0.99136,81.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08447, steps = 60  
shifted from previous position = 1.63  
rotated from previous position = 5.68 degrees  
atoms outside contour = 1526, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15568992 -0.96884080 -0.19263478 131.99315362  
-0.97473036 -0.18230454 0.12909600 128.10256668  
-0.16019167 0.16766803 -0.97274152 122.69034061  
Axis 0.76011645 -0.63933758 -0.11606224  
Axis point 0.00000000 118.53325551 72.51372716  
Rotation angle (degrees) 178.54610991  
Shift along axis 4.18966585  
  

> view matrix models
> #1,0.96774,0.18363,-0.17251,-20.75,-0.18989,0.98159,-0.020384,-1.6989,0.1656,0.052485,0.9848,62.992

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08361, steps = 92  
shifted from previous position = 2.84  
rotated from previous position = 9.22 degrees  
atoms outside contour = 1558, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31710937 -0.92096355 -0.22642391 130.61795704  
-0.92392657 -0.35387149 0.14537762 131.54121737  
-0.21401246 0.16309846 -0.96311866 122.62373135  
Axis 0.81150758 -0.56836963 -0.13568867  
Axis point -0.00000000 111.09305501 72.70227035  
Rotation angle (degrees) 179.37440524  
Shift along axis 14.59477746  
  

> view matrix models
> #1,0.95813,0.19502,-0.20966,-17.143,-0.20759,0.97742,-0.039497,2.7182,0.19722,0.081366,0.97698,56.994

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08361, steps = 72  
shifted from previous position = 1.28  
rotated from previous position = 2.63 degrees  
atoms outside contour = 1557, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31738536 -0.92092546 -0.22619202 130.62386633  
-0.92388411 -0.35406332 0.14518033 131.53184448  
-0.21378656 0.16289710 -0.96320291 122.61723528  
Axis 0.81159260 -0.56828526 -0.13553343  
Axis point -0.00000000 111.07904570 72.68573743  
Rotation angle (degrees) 179.37461445  
Shift along axis 14.64702014  
  

> view matrix models
> #1,0.94336,0.18125,-0.27788,-7.1041,-0.20503,0.97699,-0.058782,4.4023,0.26083,0.11243,0.95881,48.094

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08361, steps = 56  
shifted from previous position = 2.2  
rotated from previous position = 4.21 degrees  
atoms outside contour = 1559, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31743467 -0.92091270 -0.22617476 130.62500831  
-0.92387001 -0.35410636 0.14516506 131.53249154  
-0.21377427 0.16287566 -0.96320926 122.61485202  
Axis 0.81160779 -0.56826634 -0.13552179  
Axis point 0.00000000 111.07755764 72.68333260  
Rotation angle (degrees) 179.37484442  
Shift along axis 14.65380315  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-13.713,-0.29339,0.95225,-0.084463,19.881,0.24108,0.15919,0.95736,45.475

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08361, steps = 80  
shifted from previous position = 2.73  
rotated from previous position = 5.48 degrees  
atoms outside contour = 1557, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31738198 -0.92090635 -0.22627457 130.62470597  
-0.92388029 -0.35407684 0.14517166 131.53161685  
-0.21380809 0.16297575 -0.96318482 122.61625739  
Axis 0.81159150 -0.56827914 -0.13556572  
Axis point 0.00000000 111.07673207 72.69024488  
Rotation angle (degrees) 179.37153136  
Shift along axis 14.64466599  
  

> select subtract #1

Nothing selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.27792,-0.75256,0.597,105.01,-0.92184,-0.034169,0.38607,95.954,-0.27014,-0.65764,-0.70324,216.07

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08066, steps = 72  
shifted from previous position = 4.84  
rotated from previous position = 7.05 degrees  
atoms outside contour = 1638, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.43224852 -0.88524174 0.17177972 126.12851172  
-0.86360050 -0.35155399 0.36139170 132.16380930  
-0.25952917 -0.30456008 -0.91645391 127.57065023  
Axis -0.83902872 0.54340353 0.02726567  
Axis point -0.00000000 122.75968922 47.49153577  
Rotation angle (degrees) 156.61804985  
Shift along axis -30.52886338  
  

> view matrix models
> #4,0.37238,-0.063753,0.92589,101.92,-0.92397,-0.11925,0.36339,96.258,0.087244,-0.99082,-0.10331,214.34

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08276, steps = 100  
shifted from previous position = 4.13  
rotated from previous position = 12.7 degrees  
atoms outside contour = 1550, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.62319755 -0.05052738 0.78043052 128.65975647  
-0.75050318 -0.31926986 0.57862918 129.12090518  
0.21993133 -0.94631588 -0.23688916 121.51539047  
Axis -0.86200735 0.31683399 -0.39567608  
Axis point 0.00000000 114.37313401 -27.03376210  
Rotation angle (degrees) 117.80609477  
Shift along axis -118.07649730  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,0.92509,0.26052,-0.27628,-13.329,-0.29339,0.95225,-0.084463,22.313,0.24108,0.15919,0.95736,40.891

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08377, steps = 80  
shifted from previous position = 2.04  
rotated from previous position = 10.5 degrees  
atoms outside contour = 1581, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.62639156 0.02352655 0.77915346 130.91005108  
-0.76746018 -0.15644676 0.62171480 127.05741315  
0.13652284 -0.98740615 -0.07994124 124.34396133  
Axis -0.84481336 0.33739100 -0.41528026  
Axis point 0.00000000 121.96542171 -42.27545822  
Rotation angle (degrees) 107.75805679  
Shift along axis -119.36412453  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-12.424,-0.29339,0.95225,-0.084463,19.002,0.24108,0.15919,0.95736,41.263

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08253, steps = 112  
shifted from previous position = 0.893  
rotated from previous position = 4.7 degrees  
atoms outside contour = 1596, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.65489139 0.08255030 0.75120085 128.83142793  
-0.72887278 -0.19361411 0.65670241 130.64955142  
0.19965406 -0.97759860 -0.06662754 123.40462485  
Axis -0.85736631 0.28934550 -0.42567851  
Axis point 0.00000000 116.98134268 -41.48038811  
Rotation angle (degrees) 107.61834885  
Shift along axis -125.18356347  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-13.351,-0.29339,0.95225,-0.084463,22.661,0.24108,0.15919,0.95736,40.552

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08377, steps = 52  
shifted from previous position = 0.576  
rotated from previous position = 4.68 degrees  
atoms outside contour = 1587, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.62686055 0.02338327 0.77878051 130.91268205  
-0.76706753 -0.15669287 0.62213725 127.04054319  
0.13657695 -0.98737053 -0.08028803 124.35542201  
Axis -0.84503406 0.33717381 -0.41500753  
Axis point 0.00000000 121.93590990 -42.20368792  
Rotation angle (degrees) 107.76178422  
Shift along axis -119.39936761  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-14.785,-0.29339,0.95225,-0.084463,25.636,0.24108,0.15919,0.95736,42.765

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08143, steps = 100  
shifted from previous position = 2.79  
rotated from previous position = 11.7 degrees  
atoms outside contour = 1585, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49546443 -0.09376043 0.86355312 130.28037576  
-0.86791284 -0.09377672 0.48778400 124.89926450  
0.03524634 -0.99116846 -0.12783891 123.26556285  
Axis -0.79363407 0.44448520 -0.41542493  
Axis point 0.00000000 134.29044162 -45.22095707  
Rotation angle (degrees) 111.28919984  
Shift along axis -99.08665790  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.029694,0.030628,0.99909,105.02,-0.99953,0.0090252,0.02943,96.576,-0.0081156,-0.99949,0.030881,212.53

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08054, steps = 92  
shifted from previous position = 2.23  
rotated from previous position = 8.28 degrees  
atoms outside contour = 1566, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.27533447 -0.33711336 0.90030301 133.52652262  
-0.96101308 -0.07178053 0.26702326 125.39400674  
-0.02539288 -0.93872368 -0.34373400 124.09165548  
Axis -0.73379566 0.56336168 -0.37969402  
Axis point 0.00000000 148.11871720 -32.16509907  
Rotation angle (degrees) 124.75650427  
Shift along axis -74.45586311  
  

> view matrix models
> #4,0.010811,-0.26618,0.96386,107.76,-0.8587,0.49143,0.14535,93.604,-0.51236,-0.82924,-0.22326,214.81

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08013, steps = 88  
shifted from previous position = 5.05  
rotated from previous position = 9.77 degrees  
atoms outside contour = 1625, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.20027356 -0.68204302 0.70335469 132.86926673  
-0.91352865 0.12943516 0.38563187 126.35320731  
-0.35405636 -0.71976653 -0.59714340 129.10868929  
Axis -0.71448349 0.68346646 -0.14962267  
Axis point 0.00000000 168.12552902 2.45703695  
Rotation angle (degrees) 129.32491694  
Shift along axis -27.89230438  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08013, steps = 28  
shifted from previous position = 0.0258  
rotated from previous position = 0.0461 degrees  
atoms outside contour = 1624, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.20015177 -0.68200145 0.70342966 132.88633881  
-0.91327774 0.13010317 0.38600122 126.35555611  
-0.35477182 -0.71968548 -0.59681636 129.09073218  
Axis -0.71433971 0.68366143 -0.14941831  
Axis point 0.00000000 168.20335619 2.42914253  
Rotation angle (degrees) 129.29258408  
Shift along axis -27.83008816  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.045249,-0.39819,0.91619,111.42,-0.89843,0.38477,0.2116,93.967,-0.43678,-0.83271,-0.34033,212.08

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07916, steps = 80  
shifted from previous position = 3.4  
rotated from previous position = 3.32 degrees  
atoms outside contour = 1657, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.23776913 -0.65569643 0.71660870 140.34285803  
-0.91844067 0.08834050 0.38556801 126.29668017  
-0.31612114 -0.74983875 -0.58121363 122.38880227  
Axis -0.72915728 0.66321825 -0.16873414  
Axis point 0.00000000 164.95041807 -5.00585185  
Rotation angle (degrees) 128.86974341  
Shift along axis -39.22092207  
  

> view matrix models
> #4,0.068025,-0.3764,0.92396,109.65,-0.91765,0.33983,0.206,96.728,-0.39153,-0.86188,-0.32229,218.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07979, steps = 128  
shifted from previous position = 0.481  
rotated from previous position = 12.2 degrees  
atoms outside contour = 1620, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06016798 -0.74386703 0.66561375 137.03011789  
-0.95722066 0.14607806 0.24977952 128.18168969  
-0.28303431 -0.65216796 -0.70325567 127.41045309  
Axis -0.68006903 0.71528130 -0.16086879  
Axis point 162.29020208 0.00000000 45.75800995  
Rotation angle (degrees) 138.46102596  
Shift along axis -22.00033900  
  

> ui mousemode right translate

> ui mousemode right rotate

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.25938,0.24815,0.93335,106.98,-0.90892,-0.26397,0.32277,98.006,0.32647,-0.93206,0.15708,214.82

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08396, steps = 176  
shifted from previous position = 3.83  
rotated from previous position = 12.9 degrees  
atoms outside contour = 1588, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.54075347 0.10402817 0.83472380 130.81934117  
-0.82492007 -0.12859123 0.55042818 128.28312955  
0.16459819 -0.98622636 0.01627877 121.87169502  
Axis -0.80176454 0.34964459 -0.48468783  
Axis point 0.00000000 122.47983029 -57.58612171  
Rotation angle (degrees) 106.60544824  
Shift along axis -119.10253310  
  

> view matrix models
> #4,-0.042037,0.83051,0.55541,106.38,-0.019523,-0.55648,0.83063,96.335,0.99893,0.024074,0.039607,207.13

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08105, steps = 96  
shifted from previous position = 4.89  
rotated from previous position = 8.35 degrees  
atoms outside contour = 1586, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.21672100 0.88709516 0.40754655 134.39117952  
0.14599105 -0.44222411 0.88494319 127.00963918  
0.96525573 -0.13228763 -0.22534720 120.84823917  
Axis -0.73894323 -0.40513463 -0.53835753  
Axis point 0.00000000 27.92140370 0.78723612  
Rotation angle (degrees) 136.50422725  
Shift along axis -215.82301525  
  

> ui mousemode right rotate

> volume #1 step 1

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.020421,0.57426,0.81842,109.16,-0.61121,-0.64064,0.46476,99.31,0.79121,-0.50972,0.33791,212.24

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08271, steps = 84  
shifted from previous position = 1.64  
rotated from previous position = 6.07 degrees  
atoms outside contour = 1612, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39044265 0.60525523 0.69370068 133.36394779  
-0.52829021 -0.46980126 0.70724552 130.59335503  
0.75396551 -0.64261410 0.13631996 122.87610623  
Axis -0.76535173 -0.03416932 -0.64270459  
Axis point 0.00000000 63.74895020 -43.20488984  
Rotation angle (degrees) 118.13296434  
Shift along axis -185.50565192  
  

> view matrix models
> #4,-0.26163,0.96401,-0.047309,111.26,-0.10584,0.020064,0.99418,94.61,0.95935,0.26512,0.096784,210.3

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07711, steps = 72  
shifted from previous position = 2.14  
rotated from previous position = 2.37 degrees  
atoms outside contour = 1695, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.04032098 0.93759281 -0.34538956 136.86737308  
-0.02195247 0.34641848 0.93782318 125.73745761  
0.99894560 -0.03023180 0.03455041 117.68676537  
Axis -0.50565864 -0.70220669 -0.50121364  
Axis point 18.30920440 0.00000000 28.45295574  
Rotation angle (degrees) 106.81934853  
Shift along axis -216.48806474  
  

> view matrix models
> #4,-0.082332,0.99642,0.019394,111.25,-0.13179,-0.030174,0.99082,95.56,0.98785,0.079021,0.1338,208.76

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08152, steps = 136  
shifted from previous position = 4.19  
rotated from previous position = 17.7 degrees  
atoms outside contour = 1673, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.35006582 0.91264520 -0.21102763 136.02946890  
0.25169859 0.12535244 0.95965337 124.42595493  
0.90227587 -0.38905720 -0.18582991 123.25663372  
Axis -0.72139908 -0.59548441 -0.35352750  
Axis point 0.00000000 28.52302601 30.24747561  
Rotation angle (degrees) 110.80605947  
Shift along axis -215.79985868  
  

> view matrix models
> #4,-0.47735,0.8481,-0.22991,112.44,0.21299,0.36552,0.90611,92.282,0.85251,0.38356,-0.35512,213.09

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08178, steps = 120  
shifted from previous position = 4.24  
rotated from previous position = 12.8 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.17227440 0.72715567 -0.66450445 135.42675505  
0.33648203 0.67745369 0.65409200 122.72746058  
0.92579770 -0.11091050 -0.36138274 121.09445598  
Axis -0.42324701 -0.87985415 -0.21614498  
Axis point 9.53053085 0.00000000 65.03049858  
Rotation angle (degrees) 115.34715112  
Shift along axis -191.47519231  
  

> view matrix models
> #4,-0.519,0.69188,-0.50194,110.5,0.38568,0.7136,0.58483,92.261,0.76281,0.10994,-0.63721,212.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08046, steps = 124  
shifted from previous position = 2.98  
rotated from previous position = 13 degrees  
atoms outside contour = 1670, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.24353671 0.46477865 -0.85127591 135.20101371  
0.23872514 0.87942498 0.41185192 124.41093581  
0.94005329 -0.10291990 -0.32512661 123.18228140  
Axis -0.27418157 -0.95411098 -0.12040229  
Axis point 12.17196560 0.00000000 86.09260256  
Rotation angle (degrees) 110.15855009  
Shift along axis -170.60289401  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.42282,0.68751,-0.59039,111.7,0.21938,0.70977,0.66941,95.229,0.87926,0.15352,-0.45093,210.07

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08248, steps = 132  
shifted from previous position = 1.81  
rotated from previous position = 13 degrees  
atoms outside contour = 1612, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.15885716 0.64476894 -0.74768805 134.37097814  
0.30785985 0.75189571 0.58298813 125.74075471  
0.93807607 -0.13757129 -0.31794249 119.06567383  
Axis -0.38656520 -0.90437751 -0.18074474  
Axis point 8.07731203 0.00000000 70.42103215  
Rotation angle (degrees) 111.25085665  
Shift along axis -187.18074936  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,0.92509,0.26052,-0.27628,-16.29,-0.29339,0.95225,-0.084463,21.451,0.24108,0.15919,0.95736,31.267

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07411, steps = 112  
shifted from previous position = 2.8  
rotated from previous position = 10 degrees  
atoms outside contour = 1802, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.22725269 0.59266680 -0.77272394 136.28135733  
0.15102069 0.80533328 0.57326351 129.79164369  
0.96205455 0.01357837 -0.27251910 128.30317367  
Axis -0.29840835 -0.92493502 -0.23547326  
Axis point 15.84177146 0.00000000 77.47255995  
Rotation angle (degrees) 110.31732639  
Shift along axis -190.92829920  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-16.604,-0.29339,0.95225,-0.084463,21.801,0.24108,0.15919,0.95736,38.662

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07909, steps = 80  
shifted from previous position = 1.57  
rotated from previous position = 4.44 degrees  
atoms outside contour = 1672, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.25575601 0.64337281 -0.72156794 135.02788378  
0.16511091 0.76449527 0.62312548 127.01020362  
0.95253727 0.04022935 -0.30175212 120.36649992  
Axis -0.31747051 -0.91179028 -0.26048217  
Axis point 19.85557803 0.00000000 68.96930330  
Rotation angle (degrees) 113.35995929  
Shift along axis -190.02736700  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-14.618,-0.29339,0.95225,-0.084463,25.221,0.24108,0.15919,0.95736,37.009

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08325, steps = 112  
shifted from previous position = 2.78  
rotated from previous position = 9.99 degrees  
atoms outside contour = 1642, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.23462993 0.73064565 -0.64117528 133.75307207  
0.31282773 0.68125309 0.66184064 124.22984721  
0.92037362 -0.04528978 -0.38840858 125.79167529  
Axis -0.40078103 -0.88504066 -0.23680709  
Axis point 11.63937264 0.00000000 65.34054126  
Rotation angle (degrees) 118.09225980  
Shift along axis -193.34252005  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-17.548,-0.29339,0.95225,-0.084463,26.995,0.24108,0.15919,0.95736,40.131

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08178, steps = 60  
shifted from previous position = 1.33  
rotated from previous position = 4.1 degrees  
atoms outside contour = 1650, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.17204984 0.72707437 -0.66465157 135.41927141  
0.33663658 0.67748864 0.65397627 122.72019047  
0.92578327 -0.11122952 -0.36132164 121.11026514  
Axis -0.42332391 -0.87985365 -0.21599635  
Axis point 9.50052054 0.00000000 65.04761469  
Rotation angle (degrees) 115.33698821  
Shift along axis -191.46139823  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-15.419,-0.29339,0.95225,-0.084463,26.954,0.24108,0.15919,0.95736,37.626

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08152, steps = 80  
shifted from previous position = 3.45  
rotated from previous position = 4.05 degrees  
atoms outside contour = 1628, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.10937029 0.72741080 -0.67743019 130.63569502  
0.31033600 0.67244017 0.67194925 121.81007029  
0.94431441 -0.13673969 -0.29928673 123.41741040  
Axis -0.43488053 -0.87210931 -0.22428613  
Axis point 3.52669781 0.00000000 64.62861445  
Rotation angle (degrees) 111.59900627  
Shift along axis -190.72343081  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-12.053,-0.29339,0.95225,-0.084463,26.307,0.24108,0.15919,0.95736,33.775

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07954, steps = 72  
shifted from previous position = 3.41  
rotated from previous position = 4.99 degrees  
atoms outside contour = 1678, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.14401462 0.67833759 -0.72049837 125.87619366  
0.34428859 0.71694772 0.60617764 120.78896284  
0.92775275 -0.16076093 -0.33679484 126.47464561  
Axis -0.41492432 -0.89172655 -0.18072511  
Axis point -0.20179601 0.00000000 69.75747123  
Rotation angle (degrees) 112.45333633  
Shift along axis -182.79696378  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-15.995,-0.29339,0.95225,-0.084463,28.245,0.24108,0.15919,0.95736,38.06

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08152, steps = 84  
shifted from previous position = 3.77  
rotated from previous position = 4.98 degrees  
atoms outside contour = 1628, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.10955876 0.72730877 -0.67750929 130.63703947  
0.31036464 0.67256427 0.67181179 121.80787368  
0.94428315 -0.13667206 -0.29941623 123.41588644  
Axis -0.43478819 -0.87217104 -0.22422511  
Axis point 3.53712052 0.00000000 64.63981854  
Rotation angle (degrees) 111.60497941  
Shift along axis -190.70968364  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-20.094,-0.29339,0.95225,-0.084463,29.507,0.24108,0.15919,0.95736,42.659

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08319, steps = 144  
shifted from previous position = 3.91  
rotated from previous position = 13.4 degrees  
atoms outside contour = 1579, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.05753091 0.82983729 -0.55503177 132.13178403  
0.34290779 0.50570386 0.79162987 121.91674061  
0.93760569 -0.23586791 -0.25546407 121.84150964  
Axis -0.54759448 -0.79548595 -0.25950412  
Axis point -6.42696153 0.00000000 50.71162804  
Rotation angle (degrees) 110.24985290  
Shift along axis -200.95606392  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-21.831,-0.29339,0.95225,-0.084463,34.273,0.24108,0.15919,0.95736,43.805

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08261, steps = 108  
shifted from previous position = 5.07  
rotated from previous position = 14 degrees  
atoms outside contour = 1601, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.15939021 0.89769774 -0.41077187 133.32041980  
0.46169442 0.30000045 0.83476822 121.83616368  
0.87260130 -0.32270497 -0.36664490 124.08794047  
Axis -0.64939639 -0.72003214 -0.24461817  
Axis point -19.79651550 0.00000000 41.52536546  
Rotation angle (degrees) 116.97663530  
Shift along axis -204.65791797  
  

> view matrix models
> #1,0.92509,0.26052,-0.27628,-19.094,-0.29339,0.95225,-0.084463,34.047,0.24108,0.15919,0.95736,40.616

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08598, steps = 92  
shifted from previous position = 4.12  
rotated from previous position = 5.13 degrees  
atoms outside contour = 1509, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.19178589 0.85987098 -0.47311739 128.33662516  
0.50488778 0.32694407 0.79887165 120.62733825  
0.84160947 -0.39208350 -0.37143509 125.91572283  
Axis -0.65830846 -0.72672411 -0.19621935  
Axis point -28.55358202 0.00000000 46.12540620  
Rotation angle (degrees) 115.23630627  
Shift along axis -196.85498311  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.12564,0.91087,0.39309,95.603,-0.24794,-0.41249,0.87657,103.84,0.96059,0.012669,0.27767,209.15

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08029, steps = 124  
shifted from previous position = 2.29  
rotated from previous position = 16.5 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.25471169 0.96168194 -0.10143868 126.27749151  
-0.00980271 0.10746094 0.99416098 120.74329515  
0.96696735 -0.25223005 0.03679865 122.43341995  
Axis -0.65339731 -0.56009199 -0.50928275  
Axis point 0.00000000 14.22725028 11.03342646  
Rotation angle (degrees) 107.48849946  
Shift along axis -212.48995437  
  

> view matrix models
> #4,0.54118,0.83069,0.13066,94.704,0.54876,-0.46661,0.69365,102.29,0.63717,-0.30369,-0.70837,213.66

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08443, steps = 120  
shifted from previous position = 2.39  
rotated from previous position = 14.5 degrees  
atoms outside contour = 1567, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.34449018 0.91662269 -0.20280373 127.03414821  
0.88204281 -0.24205579 0.40423938 124.04124450  
0.32144517 -0.31813807 -0.89188630 127.00402944  
Axis -0.80872399 -0.58691293 -0.03871325  
Axis point 0.00000000 33.41512246 57.81925517  
Rotation angle (degrees) 153.47325150  
Shift along axis -180.45371292  
  

> view matrix models
> #4,0.41931,0.86985,-0.25987,96.947,0.90282,-0.42961,0.018717,104.91,-0.09536,-0.24246,-0.96546,215

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08315, steps = 108  
shifted from previous position = 3.09  
rotated from previous position = 13.6 degrees  
atoms outside contour = 1607, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.24372432 0.76933815 -0.59052287 128.53426642  
0.95007558 -0.31170683 -0.01397310 128.02239478  
-0.19482005 -0.55763578 -0.80689992 127.49589789  
Axis -0.78080236 -0.56830404 0.25957310  
Axis point 0.00000000 36.08771318 79.53831898  
Rotation angle (degrees) 159.62618905  
Shift along axis -140.02099657  
  

> view matrix models
> #4,-0.12106,0.63777,0.76065,96.259,0.9588,-0.12326,0.25594,103.25,0.25699,0.7603,-0.59657,210.22

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08039, steps = 88  
shifted from previous position = 1.39  
rotated from previous position = 7.64 degrees  
atoms outside contour = 1684, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36904189 0.76224582 0.53177945 128.40492107  
0.92656031 0.25694309 0.27471120 123.03218751  
0.07276041 0.59410568 -0.80108949 123.92720403  
Axis 0.54799030 0.78754645 0.28191704  
Axis point 27.72691710 0.00000000 38.27810705  
Rotation angle (degrees) 163.05680329  
Shift along axis 202.19540447  
  

> view matrix models
> #4,0.046228,0.6857,0.72642,95.757,0.89201,-0.35567,0.27897,104.01,0.44965,0.63507,-0.62809,210.12

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07823, steps = 112  
shifted from previous position = 3.33  
rotated from previous position = 13.1 degrees  
atoms outside contour = 1693, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.24878049 0.82640032 0.50514432 129.86767491  
0.95305147 0.11591081 0.27974557 122.51966660  
0.17263013 0.55102378 -0.81643838 126.01280364  
Axis 0.60629638 0.74315643 0.28306046  
Axis point 20.12794798 0.00000000 39.26927868  
Rotation angle (degrees) 167.07252641  
Shift along axis 205.45882123  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.046228,0.6857,0.72642,98.138,0.89201,-0.35567,0.27897,101.13,0.44965,0.63507,-0.62809,206.32

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07744, steps = 100  
shifted from previous position = 1.26  
rotated from previous position = 10.7 degrees  
atoms outside contour = 1704, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06974009 0.90963562 0.40951112 129.36711751  
0.92618832 -0.21153110 0.31213745 121.94673322  
0.37055568 0.35751593 -0.85724609 121.02722010  
Axis 0.73127153 0.62776476 0.26674588  
Axis point 0.00000000 4.73703341 36.85781943  
Rotation angle (degrees) 178.22199255  
Shift along axis 203.43986291  
  

> view matrix models
> #4,0.046228,0.6857,0.72642,92.336,0.89201,-0.35567,0.27897,97.802,0.44965,0.63507,-0.62809,215.83

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07932, steps = 180  
shifted from previous position = 6.84  
rotated from previous position = 14.8 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.26580340 0.77850619 0.56857424 125.69734085  
0.94388696 0.09023863 0.31770174 117.80686132  
0.19602541 0.62111601 -0.75880758 124.65239143  
Axis 0.59711065 0.73316549 0.32546465  
Axis point 20.06475962 0.00000000 35.73027687  
Rotation angle (degrees) 165.28159072  
Shift along axis 201.99709265  
  

> view matrix models
> #4,0.046228,0.6857,0.72642,94.317,0.89201,-0.35567,0.27897,106.91,0.44965,0.63507,-0.62809,212.4

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07823, steps = 128  
shifted from previous position = 5.9  
rotated from previous position = 13.1 degrees  
atoms outside contour = 1694, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.24883251 0.82628267 0.50531112 129.86525198  
0.95305496 0.11594880 0.27971793 122.52053025  
0.17253586 0.55119218 -0.81634463 126.00928064  
Axis 0.60626412 0.74316329 0.28311153  
Axis point 20.13247814 0.00000000 39.26277880  
Rotation angle (degrees) 167.06232189  
Shift along axis 205.46008330  
  

> view matrix models
> #4,0.046228,0.6857,0.72642,102.44,0.89201,-0.35567,0.27897,111.24,0.44965,0.63507,-0.62809,205.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07691, steps = 180  
shifted from previous position = 6.02  
rotated from previous position = 15.6 degrees  
atoms outside contour = 1767, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.04522434 0.97026486 0.23778322 133.19375006  
0.95397776 -0.11258068 0.27794250 134.01186225  
0.29644764 0.21427014 -0.93070248 122.24860452  
Axis -0.72275887 -0.66591258 -0.18487848  
Axis point 0.00000000 6.92402789 44.15878429  
Rotation angle (degrees) 177.47541090  
Shift along axis -208.10828494  
  

> view matrix models
> #4,0.20846,0.80906,0.54952,102.98,0.87012,-0.40997,0.27352,107.09,0.44658,0.42113,-0.78944,214.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07629, steps = 80  
shifted from previous position = 2.23  
rotated from previous position = 2.35 degrees  
atoms outside contour = 1755, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.08443442 0.96572285 0.24545917 131.39487561  
0.95366251 -0.14971494 0.26098518 130.07593576  
0.28878825 0.21204907 -0.93361477 126.75141647  
Axis -0.73626812 -0.65190776 -0.18145393  
Axis point 0.00000000 7.87978580 47.22136424  
Rotation angle (degrees) 178.09556568  
Shift along axis -204.53891275  
  

> view matrix models
> #4,0.24677,0.7958,0.553,102.6,0.85896,-0.44381,0.25536,103.39,0.44865,0.41199,-0.79308,213.69

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08139, steps = 176  
shifted from previous position = 3.85  
rotated from previous position = 17.7 degrees  
atoms outside contour = 1670, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.02341180 0.98621936 0.16377807 135.19480376  
0.83615358 -0.10911555 0.53753232 123.03334406  
0.54799552 0.12435902 -0.82718544 122.38245337  
Axis -0.70769714 -0.65810057 -0.25703773  
Axis point 0.00000000 5.91901549 38.10692555  
Rotation angle (degrees) 163.02742516  
Shift along axis -208.10219820  
  

> view matrix models
> #4,0.088092,0.84956,0.52008,101.24,0.74308,-0.40376,0.53368,102.33,0.66338,0.33945,-0.66686,213.55

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08273, steps = 104  
shifted from previous position = 3.54  
rotated from previous position = 11.8 degrees  
atoms outside contour = 1593, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.06841742 0.99707087 0.03418684 134.51249866  
0.75418520 0.02925821 0.65600963 121.01142678  
0.65308785 0.07066569 -0.75397787 124.04892136  
Axis -0.66080075 -0.69868367 -0.27419611  
Axis point -1.19391016 0.00000000 37.84976482  
Rotation angle (degrees) 153.71061963  
Shift along axis -207.44839849  
  

> view matrix models
> #4,-0.047248,0.91048,0.41084,102.83,0.68309,-0.27064,0.67834,95.988,0.72881,0.31269,-0.60915,211.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08414, steps = 180  
shifted from previous position = 3.5  
rotated from previous position = 12.9 degrees  
atoms outside contour = 1616, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.03638150 0.99552897 -0.08716917 136.60837332  
0.64183338 0.04358112 0.76560473 121.17108566  
0.76598061 -0.08380193 -0.63737817 125.39524286  
Axis -0.67694017 -0.67992328 -0.28188000  
Axis point -9.17149384 0.00000000 36.10424365  
Rotation angle (degrees) 141.14241265  
Shift along axis -210.20914930  
  

> view matrix models
> #4,-0.010759,0.95546,0.29491,105.51,0.53582,-0.2435,0.80846,103.42,0.84427,0.16672,-0.50933,210.36

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0844, steps = 80  
shifted from previous position = 2.66  
rotated from previous position = 5.25 degrees  
atoms outside contour = 1593, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.04622979 0.99324162 -0.10646071 135.84555236  
0.61460816 0.11229651 0.78079850 123.30380643  
0.78747674 -0.02933547 -0.61564586 120.43501093  
Axis -0.64070655 -0.70698378 -0.29944793  
Axis point -2.42759700 0.00000000 34.38683062  
Rotation angle (degrees) 140.78595800  
Shift along axis -210.27493965  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.021438,0.98028,0.19646,105.36,0.63445,-0.13853,0.76045,101.22,0.77267,0.14095,-0.61897,209.08

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0844, steps = 92  
shifted from previous position = 0.176  
rotated from previous position = 9.8 degrees  
atoms outside contour = 1592, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.04634382 0.99317285 -0.10705111 135.85036237  
0.61457876 0.11283181 0.78074447 123.29355054  
0.78749298 -0.02960866 -0.61561200 120.45072468  
Axis -0.64059740 -0.70715173 -0.29928482  
Axis point -2.41616343 0.00000000 34.42650589  
Rotation angle (degrees) 140.76533918  
Shift along axis -210.26170948  
  

> ui mousemode right rotate

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.10033,0.95635,0.27445,105.53,0.53232,-0.18144,0.82687,102.77,0.84058,0.22905,-0.49088,207.6

Drag select of 1 cryosparc_P1050_J339_004_volume_map_sharp.mrc , 3 residues  

> view matrix models
> #1,0.94023,0.23824,-0.24334,-21.826,-0.25809,0.96468,-0.052749,25.312,0.22218,0.1124,0.96851,46.765,#4,-0.088782,0.96789,0.23516,106.01,0.56329,-0.14592,0.81327,104.15,0.82147,0.20466,-0.53225,206.7

> select subtract #1

26 atoms, 3 residues, 2 models selected  

> view matrix models
> #4,-0.28711,0.95457,0.079763,107.03,0.67781,0.14361,0.72107,103.29,0.67686,0.26109,-0.68825,207.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08201, steps = 96  
shifted from previous position = 3.3  
rotated from previous position = 5.96 degrees  
atoms outside contour = 1611, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.21790528 0.95238070 -0.21327983 138.02287308  
0.66166211 0.30480231 0.68505386 126.68022440  
0.71744027 0.00815767 -0.69657226 121.12247246  
Axis -0.57026268 -0.78410093 -0.24492081  
Axis point 8.21433741 0.00000000 44.88140359  
Rotation angle (degrees) 143.59457581  
Shift along axis -207.70478938  
  

> view matrix models
> #4,-0.84318,0.27568,0.46157,109.39,0.24542,-0.5665,0.78667,106.28,0.47835,0.77658,0.41,203.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07994, steps = 100  
shifted from previous position = 1.94  
rotated from previous position = 5.81 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74372916 0.53281263 0.40370489 138.06192108  
0.13359138 -0.47326665 0.87073074 128.85462385  
0.65499640 0.70151933 0.28080303 115.17091962  
Axis -0.33764205 -0.50142354 -0.79660045  
Axis point 46.78723432 22.62341917 0.00000000  
Rotation angle (degrees) 165.48827638  
Shift along axis -202.97145840  
  

> view matrix models
> #4,-0.84032,0.29691,0.45354,109.35,0.23148,-0.56,0.7955,106.27,0.49018,0.77346,0.40186,203.45

> ui mousemode right pivot

[Repeated 1 time(s)]

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.84032,0.29691,0.45354,112.19,0.23148,-0.56,0.7955,110.21,0.49018,0.77346,0.40186,206.42

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07993, steps = 76  
shifted from previous position = 4.12  
rotated from previous position = 6.84 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74356558 0.53298663 0.40377653 138.06204345  
0.13384245 -0.47300034 0.87083688 128.84546644  
0.65513085 0.70156677 0.28037054 115.18329193  
Axis -0.33776598 -0.50155894 -0.79646266  
Axis point 46.76792849 22.60068617 0.00000000  
Rotation angle (degrees) 165.48857405  
Shift along axis -202.99544847  
  

> view matrix models
> #4,-0.84032,0.29691,0.45354,106.01,0.23148,-0.56,0.7955,107.46,0.49018,0.77346,0.40186,206.42

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08443, steps = 84  
shifted from previous position = 2.79  
rotated from previous position = 6.29 degrees  
atoms outside contour = 1619, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.80886279 0.52072469 0.27310582 137.56760199  
0.05754983 -0.39212830 0.91810861 127.92262199  
0.58517434 0.75834108 0.28721037 118.56117655  
Axis -0.27503506 -0.53721671 -0.79734179  
Axis point 50.18705498 16.36413113 0.00000000  
Rotation angle (degrees) 163.11513830  
Shift along axis -201.09186378  
  

> view matrix models
> #4,-0.84032,0.29691,0.45354,111.14,0.23148,-0.56,0.7955,105.41,0.49018,0.77346,0.40186,203.37

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07993, steps = 68  
shifted from previous position = 2.35  
rotated from previous position = 6.84 degrees  
atoms outside contour = 1661, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74370422 0.53287508 0.40366842 138.06396835  
0.13358508 -0.47319633 0.87076992 128.84795765  
0.65502600 0.70151934 0.28073395 115.17825537  
Axis -0.33765209 -0.50145420 -0.79657690  
Axis point 46.78450718 22.61332234 0.00000000  
Rotation angle (degrees) 165.48528389  
Shift along axis -202.97727443  
  

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.36371,0.8509,-0.37905,108.57,0.026805,0.39719,0.91734,102.99,0.93113,-0.34381,0.12165,206.02

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07995, steps = 264  
shifted from previous position = 2.27  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49023828 0.55068246 -0.67558512 138.48163449  
0.19117552 0.68830502 0.69977719 126.02354749  
0.85036365 -0.47221291 0.23215647 118.74840251  
Axis -0.59875535 -0.77958849 -0.18366768  
Axis point -43.50708934 0.00000000 57.91792975  
Rotation angle (degrees) 78.15001824  
Shift along axis -202.97336993  
  

> view matrix models
> #4,0.8285,0.36204,-0.4272,108.97,0.12008,0.63028,0.76702,104.55,0.54696,-0.68678,0.47872,208.12

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0814, steps = 68  
shifted from previous position = 3.17  
rotated from previous position = 7.09 degrees  
atoms outside contour = 1664, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83934781 0.01369316 -0.54342227 139.39700683  
0.45494515 0.52945690 0.71603094 123.79328512  
0.29752339 -0.84822632 0.43816885 123.03013794  
Axis -0.85479895 -0.45954044 0.24112513  
Axis point 0.00000000 166.48009783 30.45922158  
Rotation angle (degrees) 66.20366465  
Shift along axis -146.37877795  
  

> view matrix models
> #4,0.96803,0.20591,0.14327,107.15,-0.173,0.13443,0.9757,104.01,0.18164,-0.96929,0.16576,212.95

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08069, steps = 88  
shifted from previous position = 0.938  
rotated from previous position = 6.51 degrees  
atoms outside contour = 1657, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99015363 -0.00355883 -0.13993974 137.75492023  
0.13891589 0.14829400 0.97913802 124.51136192  
0.01726764 -0.98893692 0.14732822 124.36330569  
Axis -0.99423948 -0.07941861 0.07197591  
Axis point 0.00000000 134.73710811 1.22226746  
Rotation angle (degrees) 81.78500770  
Shift along axis -137.89873798  
  

> view matrix models
> #4,0.64637,0.60946,0.45909,105.94,-0.6428,0.11076,0.75799,105.59,0.41111,-0.78504,0.46335,210.27

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.078, steps = 84  
shifted from previous position = 2.12  
rotated from previous position = 7.1 degrees  
atoms outside contour = 1701, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.85683740 0.30473744 0.41589032 134.57914956  
-0.48633946 0.20989002 0.84818636 124.82449075  
0.17118291 -0.92902168 0.32804746 122.37697497  
Axis -0.90643768 0.12480925 -0.40347663  
Axis point 0.00000000 111.77989553 -65.96361672  
Rotation angle (degrees) 78.61577502  
Shift along axis -155.78460918  
  

> view matrix models
> #4,0.50594,0.86058,-0.058527,107.07,0.3388,-0.13586,0.931,103.07,0.79325,-0.49086,-0.3603,210.68

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07999, steps = 80  
shifted from previous position = 2.13  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.50879637 0.74596474 -0.42972417 137.84016461  
0.67388366 -0.03447766 0.73803259 122.18277623  
0.53573040 -0.66509240 -0.52023556 123.02440997  
Axis -0.82308412 -0.56634322 -0.04228333  
Axis point -0.00000000 52.79517673 52.60216134  
Rotation angle (degrees) 121.53090683  
Shift along axis -187.85331954  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07999, steps = 40  
shifted from previous position = 0.00455  
rotated from previous position = 0.0116 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.50881481 0.74586993 -0.42986687 137.84303755  
0.67398602 -0.03448130 0.73793895 122.18085492  
0.53558410 -0.66519853 -0.52025050 123.02832664  
Axis -0.82309149 -0.56634114 -0.04216767  
Axis point 0.00000000 52.80236292 52.61201526  
Rotation angle (degrees) 121.53091158  
Shift along axis -187.84129383  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.50865,0.85494,-0.10177,109.38,0.49061,-0.19068,0.85026,97.899,0.70752,-0.48241,-0.51643,210.79

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07752, steps = 80  
shifted from previous position = 2.88  
rotated from previous position = 12.4 degrees  
atoms outside contour = 1697, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.64783118 0.69910799 -0.30259343 137.74189361  
0.51206407 -0.10554737 0.85243776 119.78411048  
0.56400811 -0.70718298 -0.42636496 122.76360187  
Axis -0.86935861 -0.48305815 -0.10426140  
Axis point 0.00000000 58.44083075 43.17471542  
Rotation angle (degrees) 116.23415051  
Shift along axis -190.40929611  
  

> view matrix models
> #4,0.50865,0.85494,-0.10177,116.31,0.49061,-0.19068,0.85026,100.94,0.70752,-0.48241,-0.51643,206.05

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07584, steps = 104  
shifted from previous position = 2.77  
rotated from previous position = 5.83 degrees  
atoms outside contour = 1761, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.48559029 0.79633897 -0.36061935 143.19250126  
0.68500286 -0.09032858 0.72291897 124.25086662  
0.54311431 -0.59806772 -0.58935715 118.06468361  
Axis -0.82334659 -0.56328049 -0.06939374  
Axis point 0.00000000 45.00768663 48.78730164  
Rotation angle (degrees) 126.65874737  
Shift along axis -196.07809580  
  

> view matrix models
> #4,0.50865,0.85494,-0.10177,113.03,0.49061,-0.19068,0.85026,99.225,0.70752,-0.48241,-0.51643,208.43

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07667, steps = 88  
shifted from previous position = 4.35  
rotated from previous position = 8.69 degrees  
atoms outside contour = 1733, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.60581275 0.64579619 -0.46469149 143.47674714  
0.62693096 -0.02788068 0.77857577 123.54940062  
0.48984536 -0.76300062 -0.42176010 123.84430944  
Axis -0.85016294 -0.52641689 -0.01040397  
Axis point -0.00000000 63.06117273 51.88601745  
Rotation angle (degrees) 114.95548618  
Shift along axis -188.30557652  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.22563,0.97413,-0.012666,114.49,0.48353,0.12326,0.8666,98.329,0.84575,0.1894,-0.49883,206.14

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07485, steps = 68  
shifted from previous position = 3.38  
rotated from previous position = 4.41 degrees  
atoms outside contour = 1745, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.07417279 0.93100210 -0.35739822 142.03046255  
0.49969558 0.34484534 0.79459802 123.07391469  
0.86301954 -0.11965276 -0.49079578 117.24873021  
Axis -0.57692067 -0.77012156 -0.27216783  
Axis point 5.59665559 0.00000000 43.79903907  
Rotation angle (degrees) 127.59395838  
Shift along axis -208.63351681  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.22563,0.97413,-0.012666,113.06,0.48353,0.12326,0.8666,104.75,0.84575,0.1894,-0.49883,215.57

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08272, steps = 108  
shifted from previous position = 6.67  
rotated from previous position = 8.44 degrees  
atoms outside contour = 1568, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.24683665 0.93291865 -0.26217257 138.92414876  
0.56800482 0.35848279 0.74085127 124.20029595  
0.78513833 0.03395397 -0.61838898 123.80334903  
Axis -0.53748663 -0.79631879 -0.27746082  
Axis point 11.97798228 0.00000000 46.66189810  
Rotation angle (degrees) 138.88327080  
Shift along axis -207.92348114  
  

> view matrix models
> #4,-0.28781,0.9543,0.080477,107.85,0.57023,0.10325,0.81497,105.21,0.76941,0.28045,-0.57389,214.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08272, steps = 100  
shifted from previous position = 4.14  
rotated from previous position = 0.0328 degrees  
atoms outside contour = 1565, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.24706845 0.93272116 -0.26265648 138.93496345  
0.56787025 0.35900625 0.74070094 124.18597542  
0.78516276 0.03384903 -0.61836372 123.79954229  
Axis -0.53730382 -0.79648547 -0.27733643  
Axis point 12.00185790 -0.00000000 46.69260401  
Rotation angle (degrees) 138.86946612  
Shift along axis -207.89673508  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.37927,-0.035748,-0.9246,114.05,0.39821,0.89567,-0.19798,103.81,0.83522,-0.44327,-0.32546,212.63

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07817, steps = 92  
shifted from previous position = 4.47  
rotated from previous position = 13.2 degrees  
atoms outside contour = 1637, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.38711854 -0.34391833 -0.85548782 142.56709396  
0.53025552 0.67600415 -0.51171034 124.24837588  
0.75429989 -0.65171970 -0.07932915 120.99873107  
Axis -0.07620920 -0.87623161 0.47582594  
Axis point 9.31054990 0.00000000 146.01613114  
Rotation angle (degrees) 113.27980601  
Shift along axis -62.16094232  
  

> view matrix models
> #4,-0.63704,0.75489,0.15597,109.57,0.69762,0.47853,0.53323,102.11,0.32789,0.4485,-0.83146,212.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08242, steps = 132  
shifted from previous position = 7.89  
rotated from previous position = 13.8 degrees  
atoms outside contour = 1610, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.80492058 0.59138987 -0.04858877 133.51408750  
0.55061130 0.77491827 0.31036892 121.22956198  
0.22120136 0.22306881 -0.94937361 124.95435726  
Axis -0.30473347 -0.94174087 -0.14234340  
Axis point 43.30621598 0.00000000 56.40768914  
Rotation angle (degrees) 171.76461883  
Shift along axis -172.63947344  
  

> ui mousemode right translate

> select add #1

26 atoms, 3 residues, 4 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.94023,0.23824,-0.24334,-22.263,-0.25809,0.96468,-0.052749,24.87,0.22218,0.1124,0.96851,46.418,#4,-0.63704,0.75489,0.15597,109.14,0.69762,0.47853,0.53323,101.67,0.32789,0.4485,-0.83146,212.62

> select subtract #4

5 models selected  

> view matrix models
> #1,0.94023,0.23824,-0.24334,-24.685,-0.25809,0.96468,-0.052749,24.447,0.22218,0.1124,0.96851,46.14

> view matrix models
> #1,0.94023,0.23824,-0.24334,-26.509,-0.25809,0.96468,-0.052749,24.042,0.22218,0.1124,0.96851,45.86

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07619, steps = 76  
shifted from previous position = 2.43  
rotated from previous position = 6.13 degrees  
atoms outside contour = 1675, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74700975 0.65097173 -0.13495272 142.50133586  
0.50316179 0.68627603 0.52521750 124.87708918  
0.43451656 0.32443954 -0.84019899 124.63337753  
Axis -0.32297333 -0.91605370 -0.23776847  
Axis point 42.32639960 0.00000000 53.16625710  
Rotation angle (degrees) 161.89089613  
Shift along axis -190.05213816  
  

> view matrix models
> #1,0.94023,0.23824,-0.24334,-30.613,-0.25809,0.96468,-0.052749,24.476,0.22218,0.1124,0.96851,46.321

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07815, steps = 92  
shifted from previous position = 2.7  
rotated from previous position = 9.54 degrees  
atoms outside contour = 1704, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63727758 0.76889203 -0.05179127 146.02459231  
0.67143521 0.58697359 0.45236795 124.71195358  
0.37822221 0.25350947 -0.89032629 124.07084691  
Axis -0.41112961 -0.88903063 -0.20148693  
Axis point 38.33593651 0.00000000 52.42362888  
Rotation angle (degrees) 166.00459856  
Shift along axis -195.90643459  
  

> volume #1 color #dfdfdfe0

> view matrix models
> #1,0.94023,0.23824,-0.24334,-30.446,-0.25809,0.96468,-0.052749,24.693,0.22218,0.1124,0.96851,47.193

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07815, steps = 100  
shifted from previous position = 2.72  
rotated from previous position = 9.54 degrees  
atoms outside contour = 1705, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63730512 0.76886657 -0.05183030 146.02656605  
0.67138823 0.58700321 0.45239925 124.71063263  
0.37825921 0.25351811 -0.89030811 124.07161473  
Axis -0.41110742 -0.88903848 -0.20149758  
Axis point 38.33815569 0.00000000 52.42475154  
Rotation angle (degrees) 166.00219979  
Shift along axis -195.90528635  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,-0.63704,0.75489,0.15597,109.48,0.69762,0.47853,0.53323,101.57,0.32789,0.4485,-0.83146,213.61

> view matrix models
> #4,-0.63704,0.75489,0.15597,108.13,0.69762,0.47853,0.53323,106.05,0.32789,0.4485,-0.83146,215.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07874, steps = 112  
shifted from previous position = 3.34  
rotated from previous position = 16 degrees  
atoms outside contour = 1714, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63363531 0.68964011 -0.35057498 144.39435052  
0.63624813 0.72232923 0.27097749 128.44346256  
0.44010750 -0.05135177 -0.89647553 125.58496785  
Axis -0.37676127 -0.92420569 -0.06240833  
Axis point 32.12409203 -0.00000000 67.72054923  
Rotation angle (degrees) 154.67430502  
Shift along axis -180.94792438  
  

> view matrix models
> #4,-0.63704,0.75489,0.15597,108.33,0.69762,0.47853,0.53323,103.3,0.32789,0.4485,-0.83146,212.31

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07522, steps = 116  
shifted from previous position = 2.82  
rotated from previous position = 7.04 degrees  
atoms outside contour = 1753, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.61617915 0.76284196 -0.19594743 144.43881579  
0.60808946 0.61889077 0.49719354 127.01247318  
0.50055016 0.18720673 -0.84522375 123.70505825  
Axis -0.39848506 -0.89534093 -0.19893284  
Axis point 34.37487475 0.00000000 55.24718221  
Rotation angle (degrees) 157.11040627  
Shift along axis -195.88517512  
  

> ui mousemode right translate

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07522, steps = 116  
shifted from previous position = 2.82  
rotated from previous position = 7.04 degrees  
atoms outside contour = 1753, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.61617915 0.76284196 -0.19594743 144.43881579  
0.60808946 0.61889077 0.49719354 127.01247318  
0.50055016 0.18720673 -0.84522375 123.70505825  
Axis -0.39848506 -0.89534093 -0.19893284  
Axis point 34.37487475 0.00000000 55.24718221  
Rotation angle (degrees) 157.11040627  
Shift along axis -195.88517512  
  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.94023,0.23824,-0.24334,-33.106,-0.25809,0.96468,-0.052749,29.003,0.22218,0.1124,0.96851,44.659

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07815, steps = 128  
shifted from previous position = 4.48  
rotated from previous position = 9.54 degrees  
atoms outside contour = 1703, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63726856 0.76888520 -0.05200328 146.02072935  
0.67148720 0.58712062 0.45209989 124.71038770  
0.37814511 0.25318951 -0.89045008 124.08870297  
Axis -0.41112691 -0.88907163 -0.20131144  
Axis point 38.33071030 0.00000000 52.44696838  
Rotation angle (degrees) 166.00077703  
Shift along axis -195.88999511  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.20401,0.74731,-0.63238,85.812,-0.31775,0.56045,0.76481,-3.846,0.92597,0.35696,0.12312,22.068

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07278, steps = 188  
shifted from previous position = 23.5  
rotated from previous position = 27.3 degrees  
atoms outside contour = 1787, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.50475599 -0.00395896 -0.86325298 137.60557385  
0.35006041 0.91502019 0.20048880 130.85195779  
0.78910018 -0.40338862 0.46324780 111.14964220  
Axis -0.33651370 -0.92078201 0.19727905  
Axis point -77.00713179 0.00000000 147.11088191  
Rotation angle (degrees) 63.79960817  
Shift along axis -144.86479231  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,-0.8982,0.41794,0.13623,110.04,0.32708,0.42838,0.84233,103.61,0.29368,0.80114,-0.52147,210.57

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06602, steps = 164  
shifted from previous position = 18.5  
rotated from previous position = 21.5 degrees  
atoms outside contour = 1875, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.65646254 0.33751741 -0.67463985 137.75057783  
-0.29019209 0.93849061 0.18714680 131.98699941  
0.69630847 0.07292028 0.71402881 102.30230863  
Axis -0.07553966 -0.90662814 -0.41511346  
Axis point 26.35100397 0.00000000 171.44662118  
Rotation angle (degrees) 49.11893518  
Shift along axis -172.53582428  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.8982,0.41794,0.13623,78.181,0.32708,0.42838,0.84233,99.003,0.29368,0.80114,-0.52147,215.65

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07644, steps = 176  
shifted from previous position = 8.55  
rotated from previous position = 15.6 degrees  
atoms outside contour = 1738, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55863107 0.37062938 -0.74200081 144.22225472  
-0.22873939 0.92875617 0.29170236 127.39580241  
0.79725129 0.00677081 0.60360959 111.39308122  
Axis -0.16998420 -0.91828560 -0.35757087  
Axis point 13.57708311 0.00000000 144.75206626  
Rotation angle (degrees) 56.94127012  
Shift along axis -181.33215681  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07645, steps = 48  
shifted from previous position = 0.014  
rotated from previous position = 0.0298 degrees  
atoms outside contour = 1739, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55884643 0.37043010 -0.74193814 144.22720697  
-0.22827925 0.92883899 0.29179909 127.38212909  
0.79723224 0.00629821 0.60363986 111.39825426  
Axis -0.17034558 -0.91835400 -0.35722304  
Axis point 13.48504290 0.00000000 144.73850585  
Rotation angle (degrees) 56.93004185  
Shift along axis -181.34437966  
  

> view matrix models
> #4,-0.78876,0.61458,-0.012303,80.66,0.30422,0.40768,0.86096,114.02,0.53414,0.67534,-0.50853,212.55

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07688, steps = 116  
shifted from previous position = 2.27  
rotated from previous position = 5.49 degrees  
atoms outside contour = 1762, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.62528504 0.38988892 -0.67602163 138.16152314  
-0.24536590 0.92054408 0.30396410 130.38187799  
0.74081994 -0.02419155 0.67126789 115.19655167  
Axis -0.20677300 -0.89276106 -0.40027818  
Axis point 10.03193306 0.00000000 140.36904725  
Rotation angle (degrees) 52.51537558  
Shift along axis -191.07860178  
  

> view matrix models
> #4,-0.77941,0.62369,-0.059426,80.841,0.23039,0.37353,0.89855,118.85,0.58262,0.68665,-0.43482,208.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07851, steps = 108  
shifted from previous position = 5.08  
rotated from previous position = 9.88 degrees  
atoms outside contour = 1712, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53530919 0.35200089 -0.76781472 139.94666875  
-0.30848455 0.92770680 0.21023171 130.75258422  
0.78630869 0.12432001 0.60519681 119.64065722  
Axis -0.05081023 -0.91914577 -0.39062689  
Axis point 15.36342003 0.00000000 161.45185901  
Rotation angle (degrees) 57.71666976  
Shift along axis -174.02626581  
  

> view matrix models
> #4,-0.83699,0.54286,-0.068965,76.655,0.2584,0.50316,0.82466,117.44,0.48237,0.67241,-0.56142,211.07

> view matrix models
> #4,-0.83699,0.54286,-0.068965,74.748,0.2584,0.50316,0.82466,118.57,0.48237,0.67241,-0.56142,209.53

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08473, steps = 72  
shifted from previous position = 4.28  
rotated from previous position = 5.02 degrees  
atoms outside contour = 1584, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53988666 0.26974318 -0.79734623 137.37912652  
-0.26144085 0.95414917 0.14576705 125.51626591  
0.80010692 0.12976119 0.58565430 119.78031541  
Axis -0.00950733 -0.94887188 -0.31551824  
Axis point 0.71427822 0.00000000 169.99696474  
Rotation angle (degrees) 57.32690758  
Shift along axis -158.19783790  
  

> view matrix models
> #4,-0.81149,0.57596,-0.098757,75.709,0.29386,0.54828,0.78296,122.16,0.5051,0.60635,-0.61418,206.64

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08473, steps = 124  
shifted from previous position = 8.01  
rotated from previous position = 0.0162 degrees  
atoms outside contour = 1588, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53991792 0.26988732 -0.79727628 137.37922497  
-0.26133093 0.95414154 0.14601393 125.51665682  
0.80012173 0.12951742 0.58568802 119.78273565  
Axis -0.00979899 -0.94885987 -0.31554545  
Axis point 0.70633190 0.00000000 169.95821649  
Rotation angle (degrees) 57.32495554  
Shift along axis -158.24079295  
  

> view matrix models
> #4,-0.81142,0.57608,-0.098608,80.205,0.29392,0.54805,0.78311,115.56,0.50517,0.60645,-0.61402,211.36

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08158, steps = 156  
shifted from previous position = 3.65  
rotated from previous position = 14.4 degrees  
atoms outside contour = 1647, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31556326 0.28245299 -0.90589190 142.66054840  
-0.26560304 0.94280271 0.20144002 129.25072035  
0.91097467 0.17704057 0.37253427 117.91090537  
Axis -0.01285613 -0.95731155 -0.28877210  
Axis point 18.46457954 0.00000000 141.26482347  
Rotation angle (degrees) 71.61201075  
Shift along axis -159.61664885  
  

> view matrix models
> #4,-0.83895,0.53499,0.099765,81.388,0.4476,0.57404,0.68566,111.45,0.30955,0.61989,-0.72105,217.09

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08226, steps = 96  
shifted from previous position = 4.69  
rotated from previous position = 5.19 degrees  
atoms outside contour = 1600, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.32687714 0.31971743 -0.88934363 141.75355964  
-0.34833487 0.91554310 0.20110605 127.91092534  
0.87852954 0.24405243 0.41063884 116.47376477  
Axis 0.02271846 -0.93519758 -0.35339690  
Axis point 26.81534097 0.00000000 143.12030174  
Rotation angle (degrees) 70.94173261  
Shift along axis -157.56303220  
  

> view matrix models
> #4,-0.88256,0.46464,0.072043,82.792,0.37282,0.59818,0.70936,109.62,0.2865,0.65291,-0.70116,216.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08225, steps = 108  
shifted from previous position = 5.58  
rotated from previous position = 0.022 degrees  
atoms outside contour = 1599, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.32707060 0.31959363 -0.88931700 141.74929753  
-0.34800826 0.91567391 0.20107597 127.91067646  
0.87858697 0.24372362 0.41071124 116.49174831  
Axis 0.02256207 -0.93528169 -0.35318424  
Axis point 26.76151666 0.00000000 143.13901362  
Rotation angle (degrees) 70.92970917  
Shift along axis -157.57740633  
  

> view matrix models
> #4,-0.8824,0.46497,0.071969,83.497,0.37299,0.59804,0.70939,116.23,0.2868,0.6528,-0.70114,215.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08204, steps = 128  
shifted from previous position = 4.1  
rotated from previous position = 14.2 degrees  
atoms outside contour = 1665, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.18910999 0.51654081 -0.83511856 140.20806433  
-0.41609733 0.81248875 0.40831979 130.46892564  
0.88943826 0.27027325 0.36858099 116.20642976  
Axis -0.07023685 -0.87743916 -0.47451798  
Axis point 43.54818892 0.00000000 110.51123233  
Rotation angle (degrees) 79.33362847  
Shift along axis -179.46835686  
  

> view matrix models
> #4,-0.912,0.33089,0.24243,79.903,0.38696,0.49794,0.77609,110.11,0.13609,0.80161,-0.58216,212.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08171, steps = 84  
shifted from previous position = 3.33  
rotated from previous position = 9.26 degrees  
atoms outside contour = 1631, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.29520537 0.39935230 -0.86796977 143.63982858  
-0.38223816 0.88195136 0.27578213 127.24780423  
0.87564135 0.25035880 0.41300447 117.09211213  
Axis -0.01330406 -0.91243410 -0.40900736  
Axis point 34.32283368 0.00000000 135.07616999  
Rotation angle (degrees) 72.83762915  
Shift along axis -165.90776432  
  

> view matrix models
> #4,-0.89961,0.4193,0.12199,73.723,0.36168,0.55887,0.74623,115.53,0.24472,0.71544,-0.65442,211.3

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07943, steps = 92  
shifted from previous position = 1.71  
rotated from previous position = 2.96 degrees  
atoms outside contour = 1667, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.29059643 0.35339419 -0.88919416 140.80742802  
-0.37765853 0.89621216 0.23276125 126.21793529  
0.87916309 0.26817217 0.39389839 121.00055089  
Axis 0.01850256 -0.92398438 -0.38198237  
Axis point 28.03751532 0.00000000 139.31977576  
Rotation angle (degrees) 73.12087985  
Shift along axis -160.23817889  
  

> view matrix models
> #4,-0.89748,0.42807,0.10626,81.719,0.3684,0.59509,0.71425,110.3,0.24252,0.68016,-0.69178,218.03

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07795, steps = 112  
shifted from previous position = 1.63  
rotated from previous position = 8.54 degrees  
atoms outside contour = 1669, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40927952 0.28652560 -0.86625247 146.32308422  
-0.29514688 0.93994295 0.17145134 130.29333602  
0.86335311 0.18550020 0.46926654 115.56222068  
Axis 0.00769864 -0.94780724 -0.31875094  
Axis point 20.87971081 0.00000000 156.09150235  
Rotation angle (degrees) 65.84261528  
Shift along axis -159.20204519  
  

> view matrix models
> #4,-0.85003,0.52667,0.0080959,75.792,0.36484,0.57762,0.73024,120.11,0.37992,0.62368,-0.68314,212.94

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08473, steps = 84  
shifted from previous position = 6.85  
rotated from previous position = 8.57 degrees  
atoms outside contour = 1584, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53981204 0.26978647 -0.79738210 137.37805762  
-0.26154148 0.95412272 0.14575967 125.51919363  
0.80012437 0.12986567 0.58560729 119.77868455  
Axis -0.00944035 -0.94885004 -0.31558592  
Axis point 0.73504199 0.00000000 169.98923180  
Rotation angle (degrees) 57.33194695  
Shift along axis -158.19625637  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.81156,0.57587,-0.098725,72.723,0.29384,0.54833,0.78294,122.7,0.505,0.60639,-0.61422,206.06

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07927, steps = 96  
shifted from previous position = 6.05  
rotated from previous position = 7.55 degrees  
atoms outside contour = 1665, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.60849554 0.22807131 -0.76007674 129.97835162  
-0.30426319 0.95166276 0.04197494 123.81168171  
0.73291002 0.20572181 0.64847625 123.29911898  
Axis 0.10276005 -0.93693030 -0.33406882  
Axis point -9.08005743 -0.00000000 195.13016984  
Rotation angle (degrees) 52.82027045  
Shift along axis -143.83672517  
  

> view matrix models
> #4,-0.81499,0.53457,-0.22365,74.832,0.19667,0.61823,0.761,117.22,0.54507,0.57622,-0.60898,202.32

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.012963,0.88929,-0.45716,71.219,0.44308,0.40476,0.79991,118.35,0.89639,-0.21293,-0.38878,202.4

> view matrix models
> #4,-0.77393,-0.06515,-0.62991,76.525,0.62661,-0.22262,-0.74686,123.86,-0.091574,-0.97273,0.21312,205.58

> view matrix models
> #4,0.60978,-0.75195,0.25049,72.153,-0.56317,-0.63345,-0.53064,127.7,0.55769,0.1825,-0.80974,203.41

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08226, steps = 144  
shifted from previous position = 5.41  
rotated from previous position = 15.4 degrees  
atoms outside contour = 1646, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76031460 0.46736613 -0.45109933 123.65097429  
0.31257001 -0.87202992 -0.37664811 126.50209410  
-0.56940468 0.14537094 -0.80910172 129.00767600  
Axis 0.93687620 0.21232458 -0.27781516  
Axis point 0.00000000 37.20351145 90.71057993  
Rotation angle (degrees) 163.82360021  
Shift along axis 106.86487078  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.60978,-0.75195,0.25049,68.897,-0.56317,-0.63345,-0.53064,116.43,0.55769,0.1825,-0.80974,206.6

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07831, steps = 104  
shifted from previous position = 4.23  
rotated from previous position = 10.3 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.64018178 0.44068714 -0.62925521 134.12726347  
0.38184806 -0.89328950 -0.23712006 123.97896914  
-0.66660284 -0.08847994 -0.74014319 125.03952127  
Axis 0.90542080 0.22749792 -0.35841021  
Axis point 0.00000000 41.44719489 91.34008249  
Rotation angle (degrees) 175.29166776  
Shift along axis 104.83113105  
  

> view matrix models
> #4,0.5763,-0.70152,0.41922,71.724,-0.49924,-0.70834,-0.49902,110.58,0.64702,0.078297,-0.75844,204.11

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07831, steps = 132  
shifted from previous position = 8.28  
rotated from previous position = 0.0257 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.64039228 0.44049125 -0.62917818 134.13105101  
0.38192035 -0.89336419 -0.23672191 123.98758550  
-0.66635919 -0.08870107 -0.74033610 125.03465769  
Axis 0.90548044 0.22744550 -0.35829279  
Axis point 0.00000000 41.47213676 91.31835254  
Rotation angle (degrees) 175.31163752  
Shift along axis 104.85444550  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.57616,-0.70139,0.41962,75.774,-0.49908,-0.70849,-0.49897,112.11,0.64727,0.078062,-0.75825,212.97

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0791, steps = 192  
shifted from previous position = 6.56  
rotated from previous position = 28.5 degrees  
atoms outside contour = 1667, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.69882828 -0.01486950 -0.71513490 137.75694205  
0.17498632 -0.96585127 0.19107880 125.90101641  
-0.69355520 -0.25867009 -0.67236223 122.70370441  
Axis -0.92037878 -0.04416131 0.38852629  
Axis point 0.00000000 70.13122166 82.19587773  
Rotation angle (degrees) 165.85786698  
Shift along axis -84.67490434  
  

> view matrix models
> #4,0.42679,-0.55518,0.71388,73.941,-0.65442,-0.73442,-0.17991,113.19,0.62417,-0.39039,-0.67677,212.86

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07803, steps = 140  
shifted from previous position = 3.12  
rotated from previous position = 14.8 degrees  
atoms outside contour = 1690, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.61022791 -0.24096181 -0.75469152 143.00449080  
-0.01338327 -0.95562115 0.29429423 127.01107639  
-0.79211286 -0.16948631 -0.58637156 122.69095913  
Axis -0.89539474 0.07224724 0.43937296  
Axis point 0.00000000 80.40024431 86.74313536  
Rotation angle (degrees) 164.99039007  
Shift along axis -64.96217868  
  

> view matrix models
> #4,0.36642,-0.55781,0.7447,69.803,-0.80722,-0.58863,-0.043728,119.05,0.46275,-0.58511,-0.66596,210.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08138, steps = 96  
shifted from previous position = 4.09  
rotated from previous position = 9.94 degrees  
atoms outside contour = 1668, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.54731308 -0.39983259 -0.73524301 136.85122598  
-0.12318353 -0.90741925 0.40176625 127.38222987  
-0.82781290 -0.12932210 -0.54589521 127.78539614  
Axis -0.87647564 0.15277167 0.45656464  
Axis point 0.00000000 88.62917623 87.69364102  
Rotation angle (degrees) 162.36403718  
Shift along axis -42.14407574  
  

> view matrix models
> #4,0.31978,-0.51478,0.79545,70.116,-0.87607,-0.48042,0.041281,120.22,0.3609,-0.71007,-0.60461,210.77

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08138, steps = 76  
shifted from previous position = 2.8  
rotated from previous position = 0.0332 degrees  
atoms outside contour = 1664, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.54750387 -0.40007358 -0.73496981 136.85360489  
-0.12301184 -0.90724426 0.40221379 127.39459167  
-0.82771226 -0.12980362 -0.54593354 127.77335475  
Axis -0.87652029 0.15279694 0.45647046  
Axis point 0.00000000 88.65887103 87.65709939  
Rotation angle (degrees) 162.33309955  
Shift along axis -42.16469476  
  

> volume #1 step 2

> volume #1 color #c7c7c7e0

> view matrix models
> #4,0.3198,-0.51429,0.79576,75.918,-0.87595,-0.48061,0.041416,126.07,0.36115,-0.71029,-0.6042,216.08

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07882, steps = 60  
shifted from previous position = 2.54  
rotated from previous position = 3.68 degrees  
atoms outside contour = 1723, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53155230 -0.37780903 -0.75809793 139.59447662  
-0.15266997 -0.92308819 0.35298735 133.42441157  
-0.83315306 -0.07189245 -0.54834975 127.48814868  
Axis -0.87304203 0.15422310 0.46261522  
Axis point 0.00000000 89.44566049 90.82835369  
Rotation angle (degrees) 165.91666184  
Shift along axis -42.31676049  
  

> view matrix models
> #4,0.3198,-0.51429,0.79576,75.258,-0.87595,-0.48061,0.041416,123,0.36115,-0.71029,-0.6042,226.43

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08397, steps = 128  
shifted from previous position = 2.72  
rotated from previous position = 10.8 degrees  
atoms outside contour = 1578, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55322226 -0.23645172 -0.79877137 150.28862411  
-0.08145413 -0.96962987 0.23061469 133.95066867  
-0.82904183 -0.06251795 -0.55568080 128.23097608  
Axis -0.88036435 0.09091116 0.46550378  
Axis point 0.00000000 82.17957331 97.21012353  
Rotation angle (degrees) 170.41656333  
Shift along axis -60.43913297  
  

> view matrix models
> #4,0.35054,-0.63684,0.6867,79.442,-0.8555,-0.51611,-0.041938,123.19,0.38112,-0.57277,-0.72573,230.32

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07737, steps = 108  
shifted from previous position = 2.7  
rotated from previous position = 9.8 degrees  
atoms outside contour = 1744, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.50363631 -0.11698051 -0.85595912 152.28976664  
-0.09793559 -0.99213396 0.07796682 140.26219409  
-0.85834671 0.04456194 -0.51113124 128.65249293  
Axis -0.86706120 0.06197258 0.49433215  
Axis point 0.00000000 76.45220405 106.93856480  
Rotation angle (degrees) 178.89622724  
Shift along axis -59.75507509  
  

> view matrix models
> #4,0.35054,-0.63684,0.6867,76.332,-0.8555,-0.51611,-0.041938,122.73,0.38112,-0.57277,-0.72573,224.46

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08397, steps = 76  
shifted from previous position = 2.5  
rotated from previous position = 0.0175 degrees  
atoms outside contour = 1578, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55321313 -0.23618741 -0.79885589 150.28965987  
-0.08119688 -0.96968693 0.23046542 133.95007386  
-0.82907315 -0.06263189 -0.55562123 128.23094130  
Axis -0.88036195 0.09076210 0.46553740  
Axis point 0.00000000 82.16621467 97.21451951  
Rotation angle (degrees) 170.41770259  
Shift along axis -60.45540948  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08397, steps = 40  
shifted from previous position = 0.00567  
rotated from previous position = 0.00843 degrees  
atoms outside contour = 1576, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55318837 -0.23630287 -0.79883889 150.29066904  
-0.08133354 -0.96966447 0.23051172 133.95488398  
-0.82907628 -0.06254401 -0.55562646 128.22763268  
Axis -0.88035512 0.09083473 0.46553616  
Axis point 0.00000000 82.17362533 97.21378572  
Rotation angle (degrees) 170.41899980  
Shift along axis -60.44680284  
  

> view matrix models
> #4,0.35065,-0.63688,0.6866,73.461,-0.85544,-0.51619,-0.041933,120.87,0.38113,-0.57264,-0.72582,226.39

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08397, steps = 52  
shifted from previous position = 1.84  
rotated from previous position = 0.00922 degrees  
atoms outside contour = 1579, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55322305 -0.23644363 -0.79877322 150.28822063  
-0.08143515 -0.96963075 0.23061767 133.94851358  
-0.82904316 -0.06253479 -0.55567691 128.23239827  
Axis -0.88036446 0.09090349 0.46550508  
Axis point 0.00000000 82.17840119 97.21050504  
Rotation angle (degrees) 170.41591035  
Shift along axis -60.43918709  
  

> view matrix models
> #4,0.35055,-0.63684,0.6867,75.103,-0.85549,-0.51612,-0.041933,120.32,0.38113,-0.57276,-0.72573,225.89

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08397, steps = 60  
shifted from previous position = 1.86  
rotated from previous position = 0.0192 degrees  
atoms outside contour = 1576, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55319555 -0.23612884 -0.79888537 150.29061050  
-0.08124213 -0.96970762 0.23036240 133.95657531  
-0.82908045 -0.06253231 -0.55562156 128.23073298  
Axis -0.88035817 0.09075780 0.46554540  
Axis point 0.00000000 82.16402443 97.21982183  
Rotation angle (degrees) 170.42434731  
Shift along axis -60.45473572  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.022057,-0.97384,0.22615,77.413,-0.59148,-0.16966,-0.78827,121.92,0.80602,-0.15115,-0.57227,222.07

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07669, steps = 96  
shifted from previous position = 3.48  
rotated from previous position = 13.1 degrees  
atoms outside contour = 1715, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98308697 0.13128904 -0.12768392 144.00650379  
0.03127810 -0.80731665 -0.58928898 137.45050636  
-0.18044854 0.57532861 -0.79776896 123.89272183  
Axis 0.99531952 0.04509433 -0.08547255  
Axis point 0.00000000 43.42978949 89.41904803  
Rotation angle (degrees) 144.19368280  
Shift along axis 138.94129611  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.022057,-0.97384,0.22615,75.709,-0.59148,-0.16966,-0.78827,121.16,0.80602,-0.15115,-0.57227,216.43

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07966, steps = 96  
shifted from previous position = 7.66  
rotated from previous position = 8.07 degrees  
atoms outside contour = 1599, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.94790806 0.02636207 -0.31745131 137.81785709  
-0.09457036 -0.92834854 -0.35947938 129.59705529  
-0.30418208 0.37077490 -0.87749600 120.50455315  
Axis 0.98640505 -0.01792366 -0.16335182  
Axis point 0.00000000 52.51881949 84.46834851  
Rotation angle (degrees) 158.27454930  
Shift along axis 113.93673806  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07966, steps = 40  
shifted from previous position = 0.000851  
rotated from previous position = 0.00608 degrees  
atoms outside contour = 1601, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.94789944 0.02640149 -0.31747379 137.81851632  
-0.09457319 -0.92831236 -0.35957205 129.59667906  
-0.30420808 0.37086265 -0.87744990 120.50420774  
Axis 0.98640252 -0.01791444 -0.16336810  
Axis point 0.00000000 52.51418442 84.47273085  
Rotation angle (degrees) 158.26885004  
Shift along axis 113.93633755  
  

> view matrix models
> #4,-0.071696,-0.93362,0.35103,80.027,-0.58684,-0.24509,-0.77172,117.92,0.80652,-0.26133,-0.53031,212.14

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.58782,-0.53557,-0.60633,83.009,-0.23461,0.83013,-0.50581,113.22,0.77422,-0.15507,-0.61362,212.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07856, steps = 104  
shifted from previous position = 2.93  
rotated from previous position = 7.01 degrees  
atoms outside contour = 1690, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.91995547 -0.19716734 -0.33883176 141.49964405  
-0.34891453 -0.01777801 -0.93698590 132.98640113  
0.17871927 0.98020864 -0.08514953 116.12147137  
Axis 0.96263422 -0.25986530 -0.07619312  
Axis point 0.00000000 27.21413370 138.10833398  
Rotation angle (degrees) 95.24910319  
Shift along axis 92.80619122  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.58782,-0.53557,-0.60633,74.617,-0.23461,0.83013,-0.50581,113.6,0.77422,-0.15507,-0.61362,219.95

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07732, steps = 248  
shifted from previous position = 5.65  
rotated from previous position = 19.6 degrees  
atoms outside contour = 1660, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83221429 -0.09832248 -0.54566661 143.57162652  
-0.54507686 0.03515199 -0.83764882 131.06244585  
0.10154098 0.99453357 -0.02433932 121.83364026  
Axis 0.91892592 -0.32460514 -0.22406841  
Axis point 0.00000000 22.61448101 154.47683921  
Rotation angle (degrees) 94.50157614  
Shift along axis 62.08907576  
  

> view matrix models
> #4,-0.58782,-0.53557,-0.60633,71.76,-0.23461,0.83013,-0.50581,117.43,0.77422,-0.15507,-0.61362,216.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07132, steps = 92  
shifted from previous position = 1.9  
rotated from previous position = 3.27 degrees  
atoms outside contour = 1830, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.89870970 -0.29650722 -0.32311660 143.46310048  
-0.32029744 0.05947759 -0.94544802 125.16445918  
0.29955036 0.95317673 -0.04151741 125.69282627  
Axis 0.95013745 -0.31160407 -0.01190545  
Axis point 0.00000000 22.08759656 141.99175752  
Rotation angle (degrees) 92.38792335  
Shift along axis 95.81147930  
  

> ui mousemode right "translate selected atoms"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07648, steps = 112  
shifted from previous position = 5.1  
rotated from previous position = 7.19 degrees  
atoms outside contour = 1735, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.90471017 -0.23078422 -0.35810353 139.74060659  
-0.34346979 0.10217721 -0.93358894 125.22177747  
0.25204761 0.96762516 0.01317335 125.72538506  
Axis 0.95065488 -0.30509092 -0.05634562  
Axis point 0.00000000 15.62094298 147.72002296  
Rotation angle (degrees) 89.42529281  
Shift along axis 87.55698708  
  

> ui mousemode right translate

> ui mousemode right "translate selected atoms"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07465, steps = 108  
shifted from previous position = 7.82  
rotated from previous position = 8.65 degrees  
atoms outside contour = 1801, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.86214668 -0.43644711 -0.25732666 145.92523327  
-0.29275956 -0.01461404 -0.95607440 133.85088964  
0.41351533 0.89961121 -0.14037351 127.12143741  
Axis 0.93795163 -0.33907540 0.07262651  
Axis point 0.00000000 38.19313507 135.18872216  
Rotation angle (degrees) 98.41954215  
Shift along axis 100.71765353  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.20401,0.74731,-0.63238,86.196,-0.31775,0.56045,0.76481,-4.6742,0.92597,0.35696,0.12312,27.249

> view matrix models
> #1,-0.20401,0.74731,-0.63238,87.753,-0.31775,0.56045,0.76481,-4.1382,0.92597,0.35696,0.12312,24.538

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07732, steps = 232  
shifted from previous position = 6.36  
rotated from previous position = 19.5 degrees  
atoms outside contour = 1662, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83223995 -0.09928263 -0.54545359 136.65303528  
-0.54486993 0.03531137 -0.83777674 128.57688170  
0.10243739 0.99443253 -0.02470859 127.44018496  
Axis 0.91894609 -0.32495026 -0.22348468  
Axis point 0.00000000 18.14273748 154.03785507  
Rotation angle (degrees) 94.50687036  
Shift along axis 55.31475249  
  

> view matrix models
> #1,-0.20401,0.74731,-0.63238,83.4,-0.31775,0.56045,0.76481,-4.2781,0.92597,0.35696,0.12312,23.842

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08103, steps = 88  
shifted from previous position = 2.05  
rotated from previous position = 12.8 degrees  
atoms outside contour = 1614, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.92908533 -0.04723092 -0.36683741 135.05445463  
-0.36907966 -0.05377350 -0.92784083 129.38160453  
0.02409665 0.99743553 -0.06739214 124.43596553  
Axis 0.96710868 -0.19637478 -0.16167170  
Axis point 0.00000000 13.51815952 142.09928784  
Rotation angle (degrees) 95.51119002  
Shift along axis 85.08727705  
  

> view matrix models
> #1,-0.20401,0.74731,-0.63238,89.476,-0.31775,0.56045,0.76481,-4.2417,0.92597,0.35696,0.12312,25.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07834, steps = 120  
shifted from previous position = 4.64  
rotated from previous position = 8.08 degrees  
atoms outside contour = 1666, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.89045797 -0.16919965 -0.42244061 132.77692194  
-0.43783821 -0.06554624 -0.89666124 128.84501627  
0.12402538 0.98339980 -0.13244825 125.73540389  
Axis 0.95134493 -0.27652168 -0.13593597  
Axis point 0.00000000 22.62159125 139.50822868  
Rotation angle (degrees) 98.84536633  
Shift along axis 73.59624624  
  

> ui mousemode right "rotate selected models"

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.58729,-0.63635,-0.50015,76.047,-0.43347,0.76914,-0.4696,115.97,0.68351,-0.058994,-0.72755,213.79

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08066, steps = 116  
shifted from previous position = 7.42  
rotated from previous position = 9.09 degrees  
atoms outside contour = 1623, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.85089970 -0.05301747 -0.52264600 131.65004237  
-0.52512731 -0.05833216 -0.84902218 126.22962259  
0.01452594 0.99688841 -0.07747574 124.04528145  
Axis 0.93246513 -0.27135339 -0.23848715  
Axis point 0.00000000 18.11494289 144.92785126  
Rotation angle (degrees) 98.18987940  
Shift along axis 58.92303103  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.58124,-0.67798,-0.45,78.582,-0.56119,0.73444,-0.38165,119.52,0.58925,0.030708,-0.80736,207.99

> view matrix models
> #4,-0.2077,-0.25938,-0.94318,76.094,-0.27679,0.94038,-0.19766,118.88,0.93821,0.22001,-0.26711,207.92

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0793, steps = 76  
shifted from previous position = 2.13  
rotated from previous position = 3.44 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99817019 -0.05958679 -0.01028001 131.89668118  
0.01201056 0.36200257 -0.93209972 125.64950833  
0.05926222 0.93027068 0.36205584 125.86819943  
Axis 0.99856694 -0.03728720 0.03838911  
Axis point 0.00000000 -23.00411886 155.82298682  
Rotation angle (degrees) 68.83135518  
Shift along axis 131.85451622  
  

> view matrix models
> #4,-0.29956,-0.377,-0.87643,77.211,-0.3032,0.90861,-0.28722,120.57,0.90462,0.1797,-0.38649,208.18

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07981, steps = 76  
shifted from previous position = 1.58  
rotated from previous position = 7.61 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99433226 0.07199894 -0.07822725 131.46806924  
-0.09859349 0.34912593 -0.93187467 127.72573739  
-0.03978283 0.93430575 0.35424581 126.70632203  
Axis 0.99563838 -0.02051074 -0.09101391  
Axis point 0.00000000 -34.04450533 163.41135765  
Rotation angle (degrees) 69.58288552  
Shift along axis 116.74286852  
  

> view matrix models
> #4,-0.33994,-0.47815,-0.80982,78.388,-0.47179,0.83161,-0.29298,122.55,0.81354,0.28247,-0.50829,208.64

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07979, steps = 100  
shifted from previous position = 1.5  
rotated from previous position = 7.87 degrees  
atoms outside contour = 1652, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99236197 0.07413916 -0.09859563 132.09884040  
-0.10881913 0.14964834 -0.98273280 125.72983446  
-0.05810432 0.98595576 0.15657308 126.94870372  
Axis 0.99550066 -0.02047512 -0.09251596  
Axis point 0.00000000 -16.21652283 144.41256564  
Rotation angle (degrees) 81.41411871  
Shift along axis 117.18536886  
  

> view matrix models
> #4,-0.64679,0.5589,-0.51894,83.411,-0.14885,0.57483,0.80462,122.27,0.748,0.59767,-0.2886,211.04

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08228, steps = 136  
shifted from previous position = 0.978  
rotated from previous position = 9 degrees  
atoms outside contour = 1614, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.90638174 0.27020908 -0.32474479 133.62794210  
-0.33272112 0.93026613 -0.15460136 132.43873217  
0.26032439 0.24817730 0.93308050 124.22508915  
Axis 0.43230596 -0.62796002 -0.64713041  
Axis point 314.66026728 -554.76572562 0.00000000  
Rotation angle (degrees) 27.76518650  
Shift along axis -105.78790611  
  

> view matrix models
> #4,-0.66899,0.71327,-0.20904,85.146,-0.18956,0.10821,0.97589,120.92,0.71869,0.69248,0.062814,213.47

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0821, steps = 204  
shifted from previous position = 3.87  
rotated from previous position = 11.7 degrees  
atoms outside contour = 1637, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.94175451 0.31645508 -0.11381839 130.70011035  
-0.23238183 0.85699030 0.45996337 131.77251823  
0.24309900 -0.40672326 0.88061289 121.70754475  
Axis -0.79793164 -0.32860283 -0.50529721  
Axis point -0.00000000 73.05408187 -114.39566985  
Rotation angle (degrees) 32.89377735  
Shift along axis -209.08905955  
  

> view matrix models
> #4,-0.66622,0.72185,-0.18733,85.221,-0.10106,0.16148,0.98169,120.54,0.73888,0.67295,-0.034634,212.99

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07936, steps = 64  
shifted from previous position = 2.95  
rotated from previous position = 2.61 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.86588392 0.41238825 -0.28316244 131.97183304  
-0.30018279 0.88114532 0.36533985 134.95335598  
0.40016912 -0.23134141 0.88676142 122.05396111  
Axis -0.51724672 -0.59236150 -0.61770841  
Axis point 21.26657571 -32.65094175 0.00000000  
Rotation angle (degrees) 35.22479842  
Shift along axis -223.59692894  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.65404,0.72066,-0.22998,85.969,-0.13731,0.18587,0.97293,122.44,0.7439,0.66791,-0.022608,217.46

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07998, steps = 88  
shifted from previous position = 1.85  
rotated from previous position = 6.89 degrees  
atoms outside contour = 1661, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.89678619 0.40158528 -0.18575196 136.43157762  
-0.29501794 0.85557311 0.42539282 136.49910604  
0.32975588 -0.32668625 0.88574102 121.98073307  
Axis -0.65543869 -0.44926630 -0.60709135  
Axis point 0.00000000 -13.56428792 -88.06659000  
Rotation angle (degrees) 35.01017579  
Shift along axis -224.80043161  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.67512,0.69467,-0.2483,86.564,-0.18315,0.16821,0.96859,122.31,0.71461,0.69939,0.013664,216.18

> view matrix models
> #4,-0.791,0.26076,-0.55346,84.954,-0.51033,0.21774,0.83196,124.24,0.33745,0.94053,-0.039154,219.34

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08006, steps = 188  
shifted from previous position = 4.25  
rotated from previous position = 19.8 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83888482 0.54184363 -0.05174676 141.72062594  
-0.53209545 0.83637342 0.13173429 138.81200710  
0.11465900 -0.08297568 0.98993350 125.16592371  
Axis -0.19382322 -0.15021799 -0.96946744  
Axis point 251.72924420 -126.01087162 0.00000000  
Rotation angle (degrees) 33.63367174  
Shift along axis -169.66509560  
  

> view matrix models
> #4,-0.58864,0.40719,-0.69835,83.723,-0.80788,-0.26563,0.52608,123.79,0.028711,0.87386,0.48533,227.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08075, steps = 60  
shifted from previous position = 1.99  
rotated from previous position = 4.31 degrees  
atoms outside contour = 1650, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.34544181 0.84299076 0.41235485 145.74513963  
-0.91495569 0.40022729 -0.05171264 138.27861457  
-0.20862894 -0.35942271 0.90955443 125.44880483  
Axis -0.16284189 0.32862808 -0.93031506  
Axis point 189.89897282 -7.08850465 0.00000000  
Rotation angle (degrees) 70.87611637  
Shift along axis -94.99808940  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.6223,0.35441,-0.69795,77.875,-0.78211,-0.31844,0.53563,127.32,-0.032424,0.8792,0.47535,227.66

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08093, steps = 140  
shifted from previous position = 5.89  
rotated from previous position = 7.31 degrees  
atoms outside contour = 1670, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.30892790 0.87410570 0.37483699 143.10785659  
-0.94671991 0.32033838 0.03323736 137.44038844  
-0.09102171 -0.36513359 0.92649474 128.47461322  
Axis -0.20735190 0.24247924 -0.94773889  
Axis point 174.05626836 1.90756844 0.00000000  
Rotation angle (degrees) 73.86625251  
Shift along axis -118.10763312  
  

> view matrix models
> #4,-0.71296,0.29197,-0.63753,82.981,-0.69836,-0.37747,0.60812,127.07,-0.063094,0.87879,0.47302,225.65

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08191, steps = 76  
shifted from previous position = 1.18  
rotated from previous position = 9.83 degrees  
atoms outside contour = 1669, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.20894932 0.93382224 0.29037251 145.49512346  
-0.96505669 0.24491342 -0.09318257 139.22155389  
-0.15813209 -0.26075550 0.95236590 128.93203143  
Axis -0.08557017 0.22902635 -0.96965183  
Axis point 170.58937938 -1.62285005 0.00000000  
Rotation angle (degrees) 78.28086458  
Shift along axis -105.58381935  
  

> view matrix models
> #4,-0.66383,0.15742,-0.73113,78.856,-0.7282,-0.35889,0.58389,122.3,-0.17048,0.92001,0.35287,228.3

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07807, steps = 68  
shifted from previous position = 1.43  
rotated from previous position = 5.84 degrees  
atoms outside contour = 1663, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.28482571 0.91675129 0.28007389 149.81901177  
-0.95416286 0.29915663 -0.00886236 136.52720948  
-0.09191054 -0.26471188 0.95993753 127.25554668  
Axis -0.13293528 0.19327711 -0.97209679  
Axis point 174.43237287 -10.34633246 0.00000000  
Rotation angle (degrees) 74.21907217  
Shift along axis -117.23335644  
  

> view matrix models
> #4,-0.71304,0.20394,-0.6708,79.973,-0.69555,-0.32609,0.64021,123.95,-0.088178,0.92308,0.37436,230.72

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07813, steps = 96  
shifted from previous position = 2.3  
rotated from previous position = 5.06 degrees  
atoms outside contour = 1662, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.34394475 0.87911683 0.32993272 150.81690116  
-0.93468516 0.35414397 0.03075214 136.98764003  
-0.08980896 -0.31896026 0.94350342 127.01057351  
Axis -0.18461333 0.22158182 -0.95750687  
Axis point 182.13518487 -10.62234054 0.00000000  
Rotation angle (degrees) 71.28892535  
Shift along axis -119.10233753  
  

> view matrix models
> #4,-0.71188,0.28701,-0.64098,80.811,-0.70181,-0.3248,0.634,127.85,-0.026224,0.90118,0.43265,229.9

> view matrix models
> #4,-0.71188,0.28701,-0.64098,81.482,-0.70181,-0.3248,0.634,127.53,-0.026224,0.90118,0.43265,230.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0792, steps = 76  
shifted from previous position = 1.56  
rotated from previous position = 6.08 degrees  
atoms outside contour = 1626, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.41595819 0.83486145 0.36053452 150.02337449  
-0.90786514 0.40413591 0.11160221 141.95954026  
-0.05253256 -0.37373858 0.92604525 129.78536774  
Axis -0.26155370 0.22260487 -0.93916811  
Axis point 191.50496680 -5.14791019 0.00000000  
Rotation angle (degrees) 68.09494307  
Shift along axis -129.52856212  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.73924,0.28654,-0.60944,82.568,-0.67344,-0.31709,0.66779,126.92,-0.0018935,0.90407,0.42737,231.66

> view matrix models
> #4,-0.70359,0.060537,-0.70802,81.273,-0.68497,-0.32299,0.65306,126.93,-0.18915,0.94446,0.26872,232.57

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07763, steps = 60  
shifted from previous position = 1.92  
rotated from previous position = 4.12 degrees  
atoms outside contour = 1676, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.19968872 0.94765695 0.24913993 151.81819491  
-0.97579763 0.21545249 -0.03740577 142.13488790  
-0.08912566 -0.23564064 0.96774485 128.84740373  
Axis -0.10098529 0.17232007 -0.97985089  
Axis point 169.81008331 -4.31897522 0.00000000  
Rotation angle (degrees) 78.96299010  
Shift along axis -117.08995310  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.20401,0.74731,-0.63238,93.204,-0.31775,0.56045,0.76481,-3.4428,0.92597,0.35696,0.12312,29.11

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07572, steps = 92  
shifted from previous position = 1.41  
rotated from previous position = 4.83 degrees  
atoms outside contour = 1701, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.18733981 0.96405108 0.18843910 150.58571792  
-0.98208716 0.18776906 0.01573486 137.80014066  
-0.02021382 -0.18801139 0.98195881 131.60494847  
Axis -0.10353657 0.10602996 -0.98895795  
Axis point 160.27210263 -7.01416117 0.00000000  
Rotation angle (degrees) 79.71562811  
Shift along axis -131.13194425  
  

> view matrix models
> #1,-0.20401,0.74731,-0.63238,92.939,-0.31775,0.56045,0.76481,-1.4244,0.92597,0.35696,0.12312,28.834

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> view matrix models
> #1,-0.20401,0.74731,-0.63238,94.679,-0.31775,0.56045,0.76481,-2.5962,0.92597,0.35696,0.12312,30.021

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.19728,0.72683,-0.65788,98.67,-0.30099,0.59375,0.74624,-6.2718,0.933,0.34523,0.10163,32.629

> view matrix models
> #1,-0.28916,0.67624,-0.67756,116.75,-0.33405,0.59203,0.73343,-0.97386,0.89711,0.43841,0.054705,31.424

> view matrix models
> #1,-0.33318,0.76916,-0.54533,98.547,-0.3934,0.41222,0.82178,16.465,0.85687,0.48833,0.16524,19.606

> view matrix models
> #1,-0.25429,0.82482,-0.50498,79.351,-0.33543,0.41452,0.84597,7.0785,0.9071,0.3845,0.17126,24.403

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08133, steps = 108  
shifted from previous position = 3.84  
rotated from previous position = 14.7 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.57830381 0.68691664 0.44012523 148.34454233  
-0.81020305 0.54678065 0.21119167 138.52966420  
-0.09558088 -0.47872376 0.87274730 129.35682259  
Axis -0.39803560 0.30906702 -0.86373911  
Axis point 222.65876564 -5.11962620 0.00000000  
Rotation angle (degrees) 60.07169864  
Shift along axis -127.96200486  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.25429,0.82482,-0.50498,79.89,-0.33543,0.41452,0.84597,8.2653,0.9071,0.3845,0.17126,24.949

> ui mousemode right translate

> ui mousemode right rotate

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08133, steps = 96  
shifted from previous position = 2.92  
rotated from previous position = 14.7 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.57837661 0.68688793 0.44007438 148.34412722  
-0.81014409 0.54688722 0.21114195 138.52918051  
-0.09564019 -0.47864322 0.87278497 129.35845002  
Axis -0.39798914 0.30909418 -0.86375079  
Axis point 222.68601302 -5.13925567 0.00000000  
Rotation angle (degrees) 60.06452404  
Shift along axis -127.95425215  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.25376,0.83145,-0.49426,78.04,-0.29709,0.41929,0.85787,2.1172,0.92051,0.36454,0.14061,28.626

> view matrix models
> #1,-0.47372,0.87578,-0.092723,58.453,-0.25748,-0.037046,0.96557,36.032,0.8422,0.48128,0.24305,14.809

> view matrix models
> #1,-0.50638,0.85529,-0.10984,66.165,-0.25213,-0.025041,0.96737,33.934,0.82463,0.51755,0.22832,14.402

> view matrix models
> #1,-0.67728,0.66443,0.31595,63.875,-0.078258,-0.49206,0.86704,74.318,0.73156,0.5625,0.38526,4.586

> view matrix models
> #1,-0.75345,0.56674,0.33336,81.504,0.19557,-0.29088,0.93656,13.906,0.62775,0.77084,0.10833,21.867

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08043, steps = 116  
shifted from previous position = 4.37  
rotated from previous position = 12.4 degrees  
atoms outside contour = 1652, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42828826 -0.04123052 0.90270106 150.41442584  
-0.19746259 0.97054631 0.13801583 139.34791591  
-0.88180365 -0.23736026 0.40753211 126.05381255  
Axis -0.20509682 0.97501215 -0.08536160  
Axis point 195.30797015 0.00000000 -64.34712758  
Rotation angle (degrees) 66.22266406  
Shift along axis 94.25623538  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,0.28228,-0.76215,0.58262,81.268,0.11687,-0.57547,-0.80943,111.44,0.95219,0.29658,-0.073378,227.53

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0787, steps = 100  
shifted from previous position = 3.52  
rotated from previous position = 13 degrees  
atoms outside contour = 1666, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42471923 0.46625666 -0.77602725 146.16461992  
0.88127155 -0.01664779 0.47231695 126.74441392  
0.20730179 -0.88449283 -0.41796936 115.60338274  
Axis -0.78596481 -0.56961707 0.24040739  
Axis point 0.00000000 66.55809571 67.01576619  
Rotation angle (degrees) 120.32796464  
Shift along axis -159.28412212  
  

> view matrix models
> #4,-0.099923,-0.40111,0.91056,85.493,-0.37386,-0.83295,-0.40795,116.96,0.92209,-0.38119,-0.066729,222.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07384, steps = 108  
shifted from previous position = 1.22  
rotated from previous position = 5.16 degrees  
atoms outside contour = 1798, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.52453497 -0.16452158 -0.83534167 144.20830254  
0.78523836 -0.28569860 0.54934236 126.51148100  
-0.32903462 -0.94409160 -0.02067025 120.57177529  
Axis -0.81127327 -0.27503953 0.51593500  
Axis point 0.00000000 106.83443888 64.59299622  
Rotation angle (degrees) 113.01156596  
Shift along axis -89.58080095  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.099923,-0.40111,0.91056,88.229,-0.37386,-0.83295,-0.40795,117.96,0.92209,-0.38119,-0.066729,227.22

> view matrix models
> #4,-0.099923,-0.40111,0.91056,88.394,-0.37386,-0.83295,-0.40795,122.96,0.92209,-0.38119,-0.066729,224.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.079, steps = 172  
shifted from previous position = 2.95  
rotated from previous position = 21.6 degrees  
atoms outside contour = 1709, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31155777 -0.22171387 -0.92399930 142.62012359  
0.78028727 -0.49525367 0.38193662 126.16514011  
-0.54229469 -0.83998021 0.01870038 126.23783995  
Axis -0.75164140 -0.23479911 0.61636400  
Axis point 0.00000000 96.36758622 83.22147174  
Rotation angle (degrees) 125.62641430  
Shift along axis -59.01419299  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.6878,0.36434,-0.62784,87.957,-0.69851,-0.096833,0.70902,122.91,0.19753,0.92622,0.32109,235.81

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08187, steps = 144  
shifted from previous position = 6.55  
rotated from previous position = 17.2 degrees  
atoms outside contour = 1624, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.26184439 0.28462597 0.92218521 146.24857833  
-0.15461330 0.95555308 -0.25102398 137.07580325  
-0.95264486 -0.07685288 0.29421317 127.87751302  
Axis 0.09008275 0.96967786 -0.22717824  
Axis point 170.22284208 0.00000000 -10.90246157  
Rotation angle (degrees) 75.17869066  
Shift along axis 117.04285788  
  

> view matrix models
> #4,-0.64195,0.15089,-0.75176,91.339,-0.60065,0.51044,0.61536,124.11,0.47658,0.84657,-0.23705,227.53

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07935, steps = 76  
shifted from previous position = 4.72  
rotated from previous position = 9.49 degrees  
atoms outside contour = 1675, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.63382678 0.60811362 0.47797639 141.42233677  
0.02323414 0.60271195 -0.79762050 129.27686924  
-0.77312598 0.51665861 0.36788598 126.94361715  
Axis 0.68937427 0.65623639 -0.30678481  
Axis point 0.00000000 -172.03618397 129.79920724  
Rotation angle (degrees) 72.40946887  
Shift along axis 143.38473287  
  

> view matrix models
> #4,-0.82936,-0.10068,-0.54957,92.312,-0.083454,0.99492,-0.056326,120.37,0.55245,-0.000851,-0.83355,222.39

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07575, steps = 88  
shifted from previous position = 2.68  
rotated from previous position = 9.95 degrees  
atoms outside contour = 1727, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93245450 0.35699857 -0.05550330 139.39595010  
0.01778244 -0.19879050 -0.97988066 131.59474227  
-0.36084952 0.91270716 -0.19171140 128.09040311  
Axis 0.97213237 0.15684184 -0.17423920  
Axis point 0.00000000 -7.12657574 121.59386451  
Rotation angle (degrees) 103.23959962  
Shift along axis 133.83250752  
  

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.78088,-0.11959,-0.61312,91.741,-0.14443,0.98947,-0.0090525,120.89,0.60775,0.081482,-0.78993,222.44

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.78088,-0.11959,-0.61312,85.843,-0.14443,0.98947,-0.0090525,126.17,0.60775,0.081482,-0.78993,226.47

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0776, steps = 92  
shifted from previous position = 3.16  
rotated from previous position = 7.56 degrees  
atoms outside contour = 1706, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.92132159 0.38160996 0.07443363 145.41206163  
0.19772954 -0.29504449 -0.93480039 128.79257561  
-0.33476791 0.87596951 -0.34728642 128.92211619  
Axis 0.97065426 0.21935046 -0.09856819  
Axis point 0.00000000 -3.01877276 105.19085350  
Rotation angle (degrees) 111.13119215  
Shift along axis 156.68792807  
  

> view matrix models
> #4,-0.78088,-0.11959,-0.61312,84.782,-0.14443,0.98947,-0.0090525,122.36,0.60775,0.081482,-0.78993,224.83

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07546, steps = 68  
shifted from previous position = 3.14  
rotated from previous position = 6.18 degrees  
atoms outside contour = 1732, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.96382296 0.26516771 0.02704402 144.38149251  
0.09219146 -0.23644511 -0.96726131 129.12657501  
-0.25009204 0.93476189 -0.25233742 123.10950000  
Axis 0.98556809 0.14360312 -0.08963081  
Axis point 0.00000000 1.10176726 109.84791570  
Rotation angle (degrees) 105.21725496  
Shift along axis 149.80636656  
  

> view matrix models
> #4,-0.78088,-0.11959,-0.61312,88.515,-0.14443,0.98947,-0.0090525,130.18,0.60775,0.081482,-0.78993,227.9

> view matrix models
> #4,-0.78088,-0.11959,-0.61312,86.498,-0.14443,0.98947,-0.0090525,128.72,0.60775,0.081482,-0.78993,227.64

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08122, steps = 128  
shifted from previous position = 3.77  
rotated from previous position = 18.8 degrees  
atoms outside contour = 1602, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93765792 0.34038889 0.07023547 145.79236643  
0.06382142 0.03001833 -0.99750976 129.04888892  
-0.34164959 0.93980546 0.00642282 130.01154379  
Axis 0.96873885 0.20595980 -0.13829533  
Axis point 0.00000000 -27.77113083 125.43904618  
Rotation angle (degrees) 90.74202785  
Shift along axis 149.83362372  
  

> view matrix models
> #4,-0.7842,0.073838,-0.6161,86.436,-0.15516,0.93802,0.30991,125.31,0.6008,0.33863,-0.72413,226.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08122, steps = 72  
shifted from previous position = 2.19  
rotated from previous position = 0.0322 degrees  
atoms outside contour = 1601, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93761880 0.34060283 0.06971861 145.78415670  
0.06334853 0.02980237 -0.99754638 129.06130518  
-0.34184490 0.93973481 0.00636657 130.01833478  
Axis 0.96872380 0.20579943 -0.13863906  
Axis point 0.00000000 -27.76593587 125.48718577  
Rotation angle (degrees) 90.75094726  
Shift along axis 149.75970642  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.7845,0.073531,-0.61575,89.964,-0.15521,0.93806,0.30977,126.27,0.60039,0.33859,-0.72449,225.41

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08123, steps = 80  
shifted from previous position = 2.42  
rotated from previous position = 0.0541 degrees  
atoms outside contour = 1602, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93771417 0.34017101 0.07053939 145.79504656  
0.06407121 0.03022503 -0.99748750 129.04412546  
-0.34144839 0.93987772 0.00654726 130.00884771  
Axis 0.96876144 0.20601066 -0.13806114  
Axis point 0.00000000 -27.77407067 125.41779990  
Rotation angle (degrees) 90.73092889  
Shift along axis 149.87591534  
  

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> view matrix models
> #1,-0.75345,0.56674,0.33336,81.242,0.19557,-0.29088,0.93656,14.097,0.62775,0.77084,0.10833,21.722

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.71102,0.62276,0.32653,70.963,0.25593,-0.20332,0.94507,-3.2062,0.65494,0.75554,-0.01482,32.576

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08122, steps = 28  
shifted from previous position = 0.0243  
rotated from previous position = 0.0547 degrees  
atoms outside contour = 1604, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93760161 0.34064539 0.06974195 145.78221756  
0.06338436 0.02977132 -0.99754503 129.06502347  
-0.34188542 0.93972037 0.00632204 130.01883690  
Axis 0.96871650 0.20583149 -0.13864251  
Axis point 0.00000000 -27.76403610 125.48498866  
Rotation angle (degrees) 90.75360543  
Shift along axis 149.76114820  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08122, steps = 40  
shifted from previous position = 0.0191  
rotated from previous position = 0.0341 degrees  
atoms outside contour = 1602, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93765992 0.34037770 0.07026293 145.79264048  
0.06384458 0.03003522 -0.99750777 129.04870567  
-0.34163977 0.93980897 0.00643155 130.01142949  
Axis 0.96873944 0.20596859 -0.13827813  
Axis point 0.00000000 -27.77180668 125.43721667  
Rotation angle (degrees) 90.74123654  
Shift along axis 149.83732249  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,-0.72787,0.14447,-0.67032,90.253,0.041774,0.98508,0.16695,129.71,0.68444,0.093519,-0.72305,223.01

> view matrix models
> #4,-0.53664,0.26106,-0.80241,89,0.22445,0.96084,0.1625,128.41,0.81341,-0.092903,-0.57422,221.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07806, steps = 60  
shifted from previous position = 2.23  
rotated from previous position = 4.58 degrees  
atoms outside contour = 1700, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.96129322 -0.00998274 0.27534646 147.11865562  
0.27485255 -0.03515530 -0.96084347 128.44749607  
0.01927174 0.99933200 -0.03105077 127.88680648  
Axis 0.98143897 0.12821388 0.14261400  
Axis point 0.00000000 5.14059855 104.24558504  
Rotation angle (degrees) 93.00691182  
Shift along axis 179.09518230  
  

> view matrix models
> #4,0.42513,0.36397,-0.82873,82.925,0.19199,0.85849,0.47553,129.19,0.88454,-0.36127,0.29509,223.13

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08, steps = 68  
shifted from previous position = 2.42  
rotated from previous position = 8.02 degrees  
atoms outside contour = 1652, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42113221 -0.29357072 0.85817474 151.47016879  
0.87803725 -0.10523551 -0.46687908 125.02330462  
0.22737248 0.95012721 0.21344796 128.07710735  
Axis 0.72897563 0.32451477 0.60273103  
Axis point 0.00000000 33.90074742 28.92667751  
Rotation angle (degrees) 103.61093865  
Shift along axis 228.18601780  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08, steps = 40  
shifted from previous position = 0.00645  
rotated from previous position = 0.00656 degrees  
atoms outside contour = 1648, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.42108890 -0.29347872 0.85822746 151.46965380  
0.87806747 -0.10525772 -0.46681723 125.02955967  
0.22733599 0.95015317 0.21337126 128.07735895  
Axis 0.72897009 0.32456642 0.60270992  
Axis point 0.00000000 33.89682330 28.92306056  
Rotation angle (degrees) 103.61513050  
Shift along axis 228.19073841  
  

> view matrix models
> #4,-0.63603,-0.71092,0.30009,88.625,-0.32585,0.59995,0.73067,134.08,-0.69949,0.36695,-0.61324,234.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0787, steps = 76  
shifted from previous position = 3.22  
rotated from previous position = 7.05 degrees  
atoms outside contour = 1695, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.03334725 0.87463750 -0.48362918 152.58801335  
-0.80941969 -0.30749365 -0.50028733 137.31364666  
-0.58628297 0.37477578 0.71820289 134.59522441  
Axis 0.46041149 0.05401094 -0.88606099  
Axis point 168.33479114 2.52885325 0.00000000  
Rotation angle (degrees) 108.13873807  
Shift along axis -41.58986363  
  

> view matrix models
> #4,-0.80756,-0.56075,0.18278,89.924,-0.18557,0.53574,0.82374,133.21,-0.55983,0.6313,-0.5367,235.16

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07801, steps = 72  
shifted from previous position = 1.99  
rotated from previous position = 10.3 degrees  
atoms outside contour = 1712, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.23482553 0.90686458 -0.34993370 153.46951552  
-0.81862930 -0.00960622 -0.57424192 136.96025652  
-0.52412119 0.42131265 0.74013013 134.53593422  
Axis 0.49785201 0.08710682 -0.86287646  
Axis point 194.92229494 -19.99928717 0.00000000  
Rotation angle (degrees) 90.99271484  
Shift along axis -27.75261125  
  

> view matrix models
> #4,-0.75711,-0.62257,0.19797,89.425,0.21645,0.046854,0.97517,129.33,-0.61638,0.78116,0.099284,237.92

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08036, steps = 108  
shifted from previous position = 4.21  
rotated from previous position = 10.7 degrees  
atoms outside contour = 1619, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06041847 0.99282359 0.10320326 151.96019462  
-0.99447785 0.05098384 0.09173029 138.71569966  
0.08581030 -0.10817556 0.99042144 126.56369082  
Axis -0.10008272 0.00870777 -0.99494102  
Axis point 143.61353255 -3.04141401 0.00000000  
Rotation angle (degrees) 87.08170283  
Shift along axis -139.92409190  
  

> view matrix models
> #4,-0.64736,-0.68483,0.33455,90.879,0.4136,0.053043,0.90891,125.93,-0.6402,0.72677,0.24891,235.05

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08036, steps = 68  
shifted from previous position = 0.159  
rotated from previous position = 8.76 degrees  
atoms outside contour = 1618, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06037944 0.99284381 0.10303146 151.96155956  
-0.99450871 0.05099701 0.09138774 138.71773144  
0.08547946 -0.10798363 0.99047099 126.56596315  
Axis -0.09981519 0.00878740 -0.99496719  
Axis point 143.63696909 -3.05723050 0.00000000  
Rotation angle (degrees) 87.08102297  
Shift along axis -139.87808420  
  

> view matrix models
> #4,-0.25527,-0.21461,0.94275,91.681,0.8037,0.49495,0.33029,123.16,-0.5375,0.842,0.046131,234.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08368, steps = 268  
shifted from previous position = 5.77  
rotated from previous position = 23.2 degrees  
atoms outside contour = 1667, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.30875312 0.76506079 -0.56511370 145.15718767  
-0.84761616 0.49087788 0.20145906 142.39546566  
0.43153024 0.41679839 0.80003796 121.32686576  
Axis 0.11286232 -0.52235488 -0.84522629  
Axis point 127.85716894 -97.89549927 0.00000000  
Rotation angle (degrees) 72.55233796  
Shift along axis -160.54684573  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.25527,-0.21461,0.94275,92.543,0.8037,0.49495,0.33029,126.87,-0.5375,0.842,0.046131,233.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07659, steps = 128  
shifted from previous position = 3.15  
rotated from previous position = 9.17 degrees  
atoms outside contour = 1710, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.05405389 0.82006954 -0.56970529 150.47893123  
-0.82588945 0.35739280 0.43609287 137.14870493  
0.56123506 0.44694108 0.69660525 125.87616261  
Axis 0.00543204 -0.56629724 -0.82418319  
Axis point 97.98950066 -71.66116607 0.00000000  
Rotation angle (degrees) 86.90303211  
Shift along axis -180.59454313  
  

> view matrix models
> #4,-0.25527,-0.21461,0.94275,93.328,0.8037,0.49495,0.33029,125.8,-0.5375,0.842,0.046131,237.48

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07939, steps = 76  
shifted from previous position = 3.21  
rotated from previous position = 10.7 degrees  
atoms outside contour = 1688, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.17140233 0.80279537 -0.57108740 150.72110782  
-0.79363248 0.45597515 0.40278298 142.47435380  
0.58375398 0.38419557 0.71527969 123.93466900  
Axis -0.00943318 -0.58608660 -0.81019350  
Axis point 99.47682653 -82.89352727 0.00000000  
Rotation angle (degrees) 80.13492489  
Shift along axis -185.33515345  
  

> view matrix models
> #4,-0.25527,-0.21461,0.94275,93.825,0.8037,0.49495,0.33029,128.57,-0.5375,0.842,0.046131,235.87

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07612, steps = 144  
shifted from previous position = 2.38  
rotated from previous position = 7.81 degrees  
atoms outside contour = 1723, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.08925412 0.81895269 -0.56687757 152.40823825  
-0.80417942 0.39505250 0.44410468 140.18276741  
0.58764713 0.41623310 0.69384497 129.81008573  
Axis -0.01399141 -0.57956621 -0.81480503  
Axis point 95.59400320 -76.56114210 0.00000000  
Rotation angle (degrees) 84.88955917  
Shift along axis -189.14751303  
  

> select subtract #4

3 models selected  

> select add #1

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.77422,0.5395,0.33095,86.831,0.27787,-0.18009,0.94359,-8.107,0.56866,0.8225,-0.010482,34.896

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07372, steps = 72  
shifted from previous position = 4.03  
rotated from previous position = 6.44 degrees  
atoms outside contour = 1752, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.03339568 0.83228268 -0.55334461 146.23095010  
-0.73392882 0.39623289 0.55167741 146.56656907  
0.67840490 0.38769192 0.62406871 126.15334963  
Axis -0.08202232 -0.61609685 -0.78338816  
Axis point 81.36566570 -61.38080497 0.00000000  
Rotation angle (degrees) 88.46150112  
Shift along axis -201.12044359  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07372, steps = 72  
shifted from previous position = 4.03  
rotated from previous position = 6.44 degrees  
atoms outside contour = 1752, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.03339568 0.83228268 -0.55334461 146.23095010  
-0.73392882 0.39623289 0.55167741 146.56656907  
0.67840490 0.38769192 0.62406871 126.15334963  
Axis -0.08202232 -0.61609685 -0.78338816  
Axis point 81.36566570 -61.38080497 0.00000000  
Rotation angle (degrees) 88.46150112  
Shift along axis -201.12044359  
  

> view matrix models
> #1,0.62143,-0.64327,0.44724,41.349,0.77258,0.40833,-0.48619,14.414,0.13013,0.64767,0.75073,28.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07095, steps = 120  
shifted from previous position = 6.28  
rotated from previous position = 25.1 degrees  
atoms outside contour = 1877, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.10006907 0.07203477 0.99236947 147.38729243  
0.22918354 0.96888787 -0.09344080 143.51792357  
-0.96822574 0.23678528 0.08044653 126.80887849  
Axis 0.16557567 0.98304431 0.07879454  
Axis point 123.53834456 0.00000000 -7.21110770  
Rotation angle (degrees) 85.71591500  
Shift along axis 175.48007615  
  

> view matrix models
> #1,0.46585,-0.8794,-0.098166,139.57,0.83899,0.47423,-0.26684,-22.39,0.28121,0.041947,0.95873,55.318

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.06371, steps = 196  
shifted from previous position = 6.08  
rotated from previous position = 4.26 degrees  
atoms outside contour = 2027, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.45399393 0.52041955 0.72322403 152.30235745  
0.54409760 0.48085038 -0.68756142 116.42865741  
-0.70558295 0.70565317 -0.06485587 133.71364405  
Axis 0.69808383 0.71591774 0.01186412  
Axis point 105.40272311 0.00000000 53.59800700  
Rotation angle (degrees) 93.72718517  
Shift along axis 191.25954889  
  

> view matrix models
> #1,0.45165,-0.88495,-0.11349,143.35,0.84481,0.46509,-0.26454,-22.307,0.28689,0.023609,0.95767,56.748

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,259.68,0.91796,0.004275,-0.39665,32.255,0.17518,-0.90151,0.3957,225.98,#4,0.17874,-0.97032,0.16292,39.14,0.65541,0.24092,0.71582,121.96,-0.73382,-0.021167,0.67901,201.12

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,0.14754,-0.98444,0.095412,39.1,0.67568,0.17077,0.71714,121.6,-0.72228,-0.04134,0.69037,201.01

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.14754,-0.98444,0.095412,34.712,0.67568,0.17077,0.71714,118.97,-0.72228,-0.04134,0.69037,188.32

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07641, steps = 92  
shifted from previous position = 3.26  
rotated from previous position = 3.05 degrees  
atoms outside contour = 1719, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.43947725 0.48218228 0.75786541 152.14974633  
0.56472224 0.50780183 -0.65055828 129.18393323  
-0.69853313 0.71388902 -0.04913171 135.95848325  
Axis 0.68311005 0.72914540 0.04132360  
Axis point 98.67273539 0.00000000 55.86785771  
Rotation angle (degrees) 92.91912556  
Shift along axis 203.74718611  
  

> view matrix models
> #4,0.17782,-0.98266,0.052488,35.118,0.68291,0.16163,0.7124,116.24,-0.70853,-0.090831,0.69981,185.93

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08342, steps = 84  
shifted from previous position = 6.3  
rotated from previous position = 12 degrees  
atoms outside contour = 1563, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55190331 0.54205099 0.63370612 147.46570279  
0.54932082 0.33543433 -0.76533028 129.46286977  
-0.62741483 0.77049629 -0.11263258 131.22663649  
Axis 0.77283235 0.63459969 0.00365820  
Axis point 0.00000000 -71.21629377 67.97889337  
Rotation angle (degrees) 96.46795334  
Shift along axis 196.60341691  
  

> view matrix models
> #4,0.085562,-0.97627,0.19894,42.41,0.75784,0.19339,0.62312,117.62,-0.64681,0.097448,0.7564,184.95

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08342, steps = 76  
shifted from previous position = 2.56  
rotated from previous position = 0.0154 degrees  
atoms outside contour = 1563, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55207988 0.54189540 0.63368539 147.46615335  
0.54920583 0.33550155 -0.76538334 129.46165405  
-0.62736014 0.77057646 -0.11238845 131.22471157  
Axis 0.77287790 0.63454410 0.00367853  
Axis point 0.00000000 -71.21897751 67.98149139  
Rotation angle (degrees) 96.45388603  
Shift along axis 196.60517390  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08342, steps = 44  
shifted from previous position = 0.0102  
rotated from previous position = 0.0157 degrees  
atoms outside contour = 1562, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.55222371 0.54184267 0.63360516 147.46638743  
0.54927112 0.33527159 -0.76543725 129.46483195  
-0.62717637 0.77071361 -0.11247361 131.21500895  
Axis 0.77298159 0.63441744 0.00373795  
Axis point 0.00000000 -71.16825226 67.98339546  
Rotation angle (degrees) 96.45882471  
Shift along axis 196.61402558  
  

> view matrix models
> #4,0.085272,-0.97631,0.19889,41.383,0.75804,0.19312,0.62296,109.75,-0.64661,0.097645,0.75654,190.86

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08124, steps = 212  
shifted from previous position = 5.39  
rotated from previous position = 17.6 degrees  
atoms outside contour = 1675, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.66355925 0.45633933 0.59282673 137.33368869  
0.63813200 0.06835389 -0.76688675 125.41737921  
-0.39048260 0.88717651 -0.24584788 131.41892520  
Axis 0.85576826 0.50873805 0.09405469  
Axis point 0.00000000 -28.96438758 70.23719256  
Rotation angle (degrees) 104.89019244  
Shift along axis 193.69097023  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08124, steps = 212  
shifted from previous position = 5.39  
rotated from previous position = 17.6 degrees  
atoms outside contour = 1675, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.66355925 0.45633933 0.59282673 137.33368869  
0.63813200 0.06835389 -0.76688675 125.41737921  
-0.39048260 0.88717651 -0.24584788 131.41892520  
Axis 0.85576826 0.50873805 0.09405469  
Axis point -0.00000000 -28.96438758 70.23719256  
Rotation angle (degrees) 104.89019244  
Shift along axis 193.69097023  
  

> view matrix models
> #4,-0.18886,-0.92684,0.3245,48.622,0.76673,0.067292,0.63843,111.67,-0.61356,0.36938,0.69793,186.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08254, steps = 144  
shifted from previous position = 1.43  
rotated from previous position = 9.63 degrees  
atoms outside contour = 1635, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.53742675 0.55455906 0.63532411 141.91537950  
0.68859647 0.14633811 -0.71022535 126.56285973  
-0.48683404 0.81917605 -0.30322140 128.58563295  
Axis 0.80424958 0.59009703 0.07048478  
Axis point -0.00000000 -40.52195435 62.49381094  
Rotation angle (degrees) 108.04285568  
Shift along axis 197.88308283  
  

> view matrix models
> #4,-0.085998,-0.93922,0.33238,48.151,0.68938,0.18476,0.70044,116.96,-0.71927,0.28938,0.63159,182.54

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07839, steps = 84  
shifted from previous position = 3.44  
rotated from previous position = 8.08 degrees  
atoms outside contour = 1777, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.54545453 0.64866013 0.53077244 143.33102395  
0.63606855 0.09202339 -0.76612563 130.76090915  
-0.54579863 0.75549436 -0.36239773 121.54276523  
Axis 0.81632030 0.57755999 -0.00675514  
Axis point 0.00000000 -36.79158287 69.76077950  
Rotation angle (degrees) 111.25134437  
Shift along axis 191.70525457  
  

> view matrix models
> #4,-0.017284,-0.89645,0.4428,49.531,0.71992,0.29617,0.6277,102.87,-0.69385,0.32963,0.64025,190.84

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07762, steps = 116  
shifted from previous position = 3.61  
rotated from previous position = 9.07 degrees  
atoms outside contour = 1691, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.57075249 0.70825106 0.41547806 130.74023960  
0.62323468 -0.04421329 -0.78078403 120.77740139  
-0.53462147 0.70457477 -0.46664147 129.33350448  
Axis 0.84143036 0.53821513 -0.04816033  
Axis point 0.00000000 -30.46884941 79.08860481  
Rotation angle (degrees) 118.03761589  
Shift along axis 168.78428870  
  

> view matrix models
> #4,-0.029992,-0.81653,0.57652,50.254,0.73865,0.37048,0.56315,95.688,-0.67342,0.44274,0.59202,185.59

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07608, steps = 76  
shifted from previous position = 0.177  
rotated from previous position = 3.12 degrees  
atoms outside contour = 1721, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.58794003 0.71679714 0.37487114 125.45196613  
0.58185409 -0.05281655 -0.81157638 127.39061534  
-0.56193623 0.69527855 -0.44812432 132.68890543  
Axis 0.84681108 0.52646002 -0.07583429  
Axis point 0.00000000 -27.62504382 86.91299944  
Rotation angle (degrees) 117.16151555  
Shift along axis 163.23781217  
  

> view matrix models
> #4,0.0044226,-0.80815,0.58896,49.993,0.76509,0.38198,0.5184,95.114,-0.64391,0.44831,0.61999,185.87

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.21903,-0.028832,-0.97529,49.53,-0.40449,-0.90694,0.11765,97.264,-0.88793,0.42027,0.18698,186.11

> view matrix models
> #4,-0.11406,-0.16392,-0.97986,48.364,-0.0084608,-0.9861,0.16595,94.522,-0.99344,0.027219,0.11109,185.25

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08118, steps = 84  
shifted from previous position = 4.55  
rotated from previous position = 9.74 degrees  
atoms outside contour = 1612, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.22456071 -0.89023468 0.39630127 128.03291960  
0.94092998 -0.09232689 0.32577063 126.72475044  
-0.25342305 0.44604703 0.85838150 130.58550439  
Axis 0.06178370 0.33375100 0.94063439  
Axis point 30.69668229 89.58540740 0.00000000  
Rotation angle (degrees) 103.25309980  
Shift along axis 173.03807442  
  

> view matrix models
> #4,-0.89291,0.37374,-0.25107,59.724,0.32538,0.92107,0.2139,102.79,0.3112,0.1093,-0.94404,174.17

> view matrix models
> #4,-0.024559,-0.98801,-0.15244,49.64,-0.99142,0.0044861,0.13065,108.12,-0.1284,0.15434,-0.97964,177.12

> view matrix models
> #4,-0.14193,0.98599,0.087649,57.848,0.87487,0.083525,0.47711,97.086,0.4631,0.1444,-0.87446,173.49

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0793, steps = 80  
shifted from previous position = 1.64  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1692, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.85743618 -0.32587566 0.39825650 121.20427802  
-0.51398196 -0.50472714 0.69359430 136.18877019  
-0.02501464 -0.79940951 -0.60026552 120.71672997  
Axis -0.95509288 0.27077175 -0.12033391  
Axis point 0.00000000 112.86215130 12.03117295  
Rotation angle (degrees) 128.59256955  
Shift along axis -93.41158772  
  

> view matrix models
> #4,-0.8621,0.07718,0.50082,61.074,-0.10518,0.93955,-0.32585,102.57,-0.4957,-0.33359,-0.80187,178.02

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.8621,0.07718,0.50082,63.397,-0.10518,0.93955,-0.32585,108.42,-0.4957,-0.33359,-0.80187,179.26

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08407, steps = 88  
shifted from previous position = 3.4  
rotated from previous position = 5.5 degrees  
atoms outside contour = 1530, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06625757 0.78145397 -0.62043503 130.09764942  
0.77830899 0.34861633 0.52220855 125.41503612  
0.62437572 -0.51749043 -0.58511418 114.97972106  
Axis -0.64104033 -0.76750474 -0.00193908  
Axis point -25.53121263 0.00000000 62.26040788  
Rotation angle (degrees) 125.81147789  
Shift along axis -179.87743022  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.78757,0.61108,0.079465,64.181,-0.22507,-0.4053,0.88604,105.94,0.57365,0.67994,0.45674,181.84

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.78757,0.61108,0.079465,59.003,-0.22507,-0.4053,0.88604,123.45,0.57365,0.67994,0.45674,182.75

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07603, steps = 76  
shifted from previous position = 2.01  
rotated from previous position = 5.81 degrees  
atoms outside contour = 1734, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13509188 -0.44717019 0.88418833 149.54084829  
-0.08698400 -0.89427557 -0.43898175 126.59468093  
0.98700758 -0.01760736 -0.15970602 114.09299963  
Axis 0.74739235 -0.18237065 0.63886276  
Axis point 0.00000000 80.49554200 8.15354540  
Rotation angle (degrees) 163.62658104  
Shift along axis 161.56830004  
  

> view matrix models
> #4,-0.78757,0.61108,0.079465,65.525,-0.22507,-0.4053,0.88604,120.28,0.57365,0.67994,0.45674,182.12

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07967, steps = 176  
shifted from previous position = 6.85  
rotated from previous position = 12.7 degrees  
atoms outside contour = 1645, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.16517157 -0.64502329 0.74609872 137.74965639  
-0.14879877 -0.76412760 -0.62766864 125.21606224  
0.97497552 -0.00734556 -0.22219083 114.55128814  
Axis 0.75036540 -0.27685772 0.60025125  
Axis point 0.00000000 83.40089398 25.71698856  
Rotation angle (degrees) 155.58471623  
Shift along axis 137.45509752  
  

> view matrix models
> #4,-0.80197,0.56631,0.19012,67.937,-0.23574,-0.59246,0.77034,114.94,0.54888,0.57297,0.60863,182.05

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07967, steps = 204  
shifted from previous position = 6.47  
rotated from previous position = 0.00461 degrees  
atoms outside contour = 1645, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.16516771 -0.64508277 0.74604814 137.74931590  
-0.14882998 -0.76407730 -0.62772248 125.21736097  
0.97497141 -0.00735484 -0.22220856 114.55158291  
Axis 0.75036187 -0.27689273 0.60023952  
Axis point 0.00000000 83.40355349 25.72079424  
Rotation angle (degrees) 155.58272588  
Shift along axis 137.44844377  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.4514,0.88991,-0.065511,59.621,-0.75197,-0.4189,-0.50898,114.04,-0.48039,-0.18049,0.85828,187.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07937, steps = 88  
shifted from previous position = 1.27  
rotated from previous position = 7.04 degrees  
atoms outside contour = 1658, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63212989 -0.74994373 -0.19492613 140.22038760  
0.53731909 -0.24299162 -0.80761578 122.79162791  
0.55830098 -0.61525561 0.55656136 118.34133854  
Axis 0.12791650 -0.50088420 0.85600957  
Axis point 21.11282470 131.17845088 0.00000000  
Rotation angle (degrees) 131.24499083  
Shift along axis 57.73343264  
  

> view matrix models
> #4,-0.70545,0.64992,0.28275,60.333,-0.37914,-0.0089826,-0.9253,111.74,-0.59883,-0.75995,0.25275,184.16

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08086, steps = 76  
shifted from previous position = 4.42  
rotated from previous position = 6.71 degrees  
atoms outside contour = 1672, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.14361636 -0.45460942 -0.87903618 140.33207241  
0.81563440 0.44866597 -0.36529353 124.03183522  
0.56045950 -0.76943428 0.30635931 117.81124738  
Axis -0.20599604 -0.73373052 0.64746054  
Axis point -28.99873844 0.00000000 187.14443661  
Rotation angle (degrees) 101.20357411  
Shift along axis -43.63565927  
  

> view matrix models
> #4,-0.43792,0.87782,0.19406,59.083,-0.55014,-0.090942,-0.8301,112.86,-0.71104,-0.47028,0.52275,186.68

> view matrix models
> #4,-0.9615,0.1176,0.24837,60.108,-0.20768,0.28094,-0.93698,111.56,-0.17997,-0.95249,-0.2457,179.27

> view matrix models
> #4,0.13872,-0.67929,-0.72064,47.283,-0.80178,0.35008,-0.48434,117.04,0.58129,0.64498,-0.49608,178.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08362, steps = 108  
shifted from previous position = 3.79  
rotated from previous position = 4.97 degrees  
atoms outside contour = 1580, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.66072109 0.70499110 -0.25775022 141.82866645  
-0.55636088 -0.22943611 0.79863736 133.42945166  
0.50389503 0.67107869 0.54382275 122.17884840  
Axis -0.08624770 -0.51497988 -0.85285230  
Axis point 74.60419648 -2.78507571 0.00000000  
Rotation angle (degrees) 132.31198604  
Shift along axis -185.14639187  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.058524,-0.70748,-0.70431,50.931,-0.80876,0.37999,-0.4489,116.26,0.58521,0.59589,-0.54994,175.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08215, steps = 132  
shifted from previous position = 4.8  
rotated from previous position = 11 degrees  
atoms outside contour = 1582, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.60024199 0.67047964 -0.43608095 138.59558179  
-0.67225481 -0.12752339 0.72925389 133.43951414  
0.43333937 0.73088633 0.52727806 119.00635146  
Axis 0.00102051 -0.54351190 -0.83940084  
Axis point 81.22052355 -13.12329259 0.00000000  
Rotation angle (degrees) 126.88735061  
Shift along axis -172.27855751  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.10997,-0.8696,-0.48135,54.334,-0.68573,0.28419,-0.67008,112.26,0.7195,0.40377,-0.56506,176.22

> ui mousemode right pivot

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08296, steps = 96  
shifted from previous position = 3.94  
rotated from previous position = 10.1 degrees  
atoms outside contour = 1591, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.45747505 0.75810220 -0.46475545 134.73248360  
-0.73458333 -0.02766191 0.67795437 133.62083479  
0.50110268 0.65154882 0.56954388 120.54628112  
Axis -0.01485032 -0.54319247 -0.83947686  
Axis point 80.15373881 -20.18203232 0.00000000  
Rotation angle (degrees) 117.24501360  
Shift along axis -175.77846581  
  

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> ui mousemode right "translate selected atoms"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08212, steps = 128  
shifted from previous position = 3.33  
rotated from previous position = 6.26 degrees  
atoms outside contour = 1571, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.52472750 0.76224947 -0.37899443 134.40894214  
-0.68471174 -0.11339376 0.71993866 132.08838040  
0.50579727 0.63727356 0.58142199 123.58871671  
Axis -0.04868227 -0.52106224 -0.85212920  
Axis point 76.04143853 -12.68666525 0.00000000  
Rotation angle (degrees) 121.89401414  
Shift along axis -180.68315381  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08269, steps = 132  
shifted from previous position = 2.25  
rotated from previous position = 10.7 degrees  
atoms outside contour = 1569, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56257157 0.78473709 -0.26019400 136.51656171  
-0.69341610 -0.27648550 0.66537949 132.02889576  
0.45020810 0.55474630 0.69969222 125.34374865  
Axis -0.06730619 -0.43218909 -0.89926774  
Axis point 79.48624824 -0.34150644 0.00000000  
Rotation angle (degrees) 124.72808325  
Shift along axis -178.96744784  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08362, steps = 136  
shifted from previous position = 4.8  
rotated from previous position = 12.6 degrees  
atoms outside contour = 1582, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.66064781 0.70498044 -0.25796711 133.98844179  
-0.55631654 -0.22904177 0.79878142 136.42980542  
0.50404004 0.67122458 0.54350823 126.57678781  
Axis -0.08623834 -0.51517605 -0.85273477  
Axis point 70.61422172 -0.50647851 0.00000000  
Rotation angle (degrees) 132.30605555  
Shift along axis -189.77673695  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08362, steps = 68  
shifted from previous position = 2.78  
rotated from previous position = 0.0348 degrees  
atoms outside contour = 1580, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.66082393 0.70491457 -0.25769590 136.00761488  
-0.55635604 -0.22961695 0.79858876 134.64290718  
0.50376551 0.67109724 0.54391985 125.89473682  
Axis -0.08621220 -0.51491472 -0.85289524  
Axis point 71.38599146 -1.70669420 0.00000000  
Rotation angle (degrees) 132.31921455  
Shift along axis -188.43015241  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07923, steps = 92  
shifted from previous position = 0.861  
rotated from previous position = 11.1 degrees  
atoms outside contour = 1652, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.51176194 0.80636079 -0.29644896 135.49389483  
-0.60292665 -0.09127669 0.79255789 134.50337405  
0.61202873 0.58433794 0.53288834 126.94001116  
Axis -0.12323559 -0.53768519 -0.83409090  
Axis point 68.17063720 -10.43923993 0.00000000  
Rotation angle (degrees) 122.34900744  
Shift along axis -194.89764975  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07821, steps = 144  
shifted from previous position = 3.55  
rotated from previous position = 9.12 degrees  
atoms outside contour = 1626, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.64175773 0.74899572 -0.16477993 133.42011846  
-0.45029336 -0.19408435 0.87153149 134.65326694  
0.62079215 0.63351138 0.46182293 125.52478351  
Axis -0.16377943 -0.54054487 -0.82521969  
Axis point 61.43194821 -0.13200507 0.00000000  
Rotation angle (degrees) 133.39385466  
Shift along axis -198.22312698  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07639, steps = 104  
shifted from previous position = 5.37  
rotated from previous position = 17.6 degrees  
atoms outside contour = 1720, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.60297812 0.78599905 0.13646567 139.55156402  
-0.29573378 -0.37910648 0.87682370 141.40574782  
0.74091761 0.48834800 0.46103939 131.10748325  
Axis -0.29914435 -0.46545609 -0.83298456  
Axis point 55.20137465 17.53433377 0.00000000  
Rotation angle (degrees) 139.51029172  
Shift along axis -216.77473842  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08017, steps = 116  
shifted from previous position = 4.22  
rotated from previous position = 11 degrees  
atoms outside contour = 1629, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.51885045 0.84509606 -0.12886758 130.65694392  
-0.39739709 -0.10497150 0.91162302 133.04782020  
0.75688160 0.52420762 0.39030323 125.15683927  
Axis -0.24608686 -0.56262924 -0.78923355  
Axis point 51.14174596 -2.76734763 0.00000000  
Rotation angle (degrees) 128.07987016  
Shift along axis -205.78752697  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.2703,-0.68955,-0.67191,52.041,-0.7782,0.56739,-0.26921,104.38,0.56687,0.45011,-0.68997,179.89

> view matrix models
> #4,-0.2703,-0.68955,-0.67191,36.624,-0.7782,0.56739,-0.26921,110.33,0.56687,0.45011,-0.68997,180.67

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07646, steps = 140  
shifted from previous position = 5.27  
rotated from previous position = 8.3 degrees  
atoms outside contour = 1732, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56775680 0.81094772 -0.14147792 139.05189616  
-0.48269975 -0.18874635 0.85520510 135.13507672  
0.66682319 0.55383987 0.49860628 132.97542567  
Axis -0.19381721 -0.51984321 -0.83198433  
Axis point 61.80849713 -2.30539864 0.00000000  
Rotation angle (degrees) 128.97258232  
Shift along axis -207.83317370  
  

> view matrix models
> #4,-0.14139,-0.66568,-0.73272,43.502,-0.78774,0.52393,-0.32399,102.61,0.59956,0.53138,-0.59846,182.03

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07864, steps = 124  
shifted from previous position = 3.6  
rotated from previous position = 12.3 degrees  
atoms outside contour = 1645, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.61217507 0.78805459 0.06489710 133.31061746  
-0.37992919 -0.36512632 0.84990386 136.72313460  
0.69346628 0.49563366 0.52292618 132.59966598  
Axis -0.25804939 -0.45784796 -0.85075599  
Axis point 56.04314946 14.18919260 0.00000000  
Rotation angle (degrees) 136.65113664  
Shift along axis -209.80909199  
  

> view matrix models
> #4,-0.19212,-0.533,-0.82401,41.927,-0.83864,0.52525,-0.14421,114.48,0.50968,0.66335,-0.54791,184.95

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07085, steps = 88  
shifted from previous position = 2.13  
rotated from previous position = 8.56 degrees  
atoms outside contour = 1837, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.54884185 0.82085951 0.15799453 147.71322257  
-0.28332860 -0.36048919 0.88869142 134.44420583  
0.78644613 0.44298667 0.43042453 132.08224257  
Axis -0.33103053 -0.46675893 -0.82009444  
Axis point 54.69591644 11.96193141 0.00000000  
Rotation angle (degrees) 137.68486210  
Shift along axis -219.97053295  
  

> view matrix models
> #4,-0.33348,-0.50307,-0.79731,39.797,-0.81697,0.57626,-0.021898,103.16,0.47048,0.64408,-0.60317,176.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07864, steps = 100  
shifted from previous position = 3.22  
rotated from previous position = 8.53 degrees  
atoms outside contour = 1646, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.61220429 0.78800765 0.06519080 133.32233880  
-0.37930893 -0.36502362 0.85022496 136.71827491  
0.69377996 0.49578392 0.52236737 132.60678522  
Axis -0.25827058 -0.45803411 -0.85058866  
Axis point 56.00921771 14.17969405 0.00000000  
Rotation angle (degrees) 136.67139500  
Shift along axis -209.84869812  
  

> view matrix models
> #4,-0.19264,-0.53315,-0.82379,46.295,-0.83879,0.52514,-0.14372,109.82,0.50924,0.6633,-0.54837,173.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07874, steps = 76  
shifted from previous position = 1.53  
rotated from previous position = 10.6 degrees  
atoms outside contour = 1608, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.60289809 0.79413978 0.07652385 136.68746371  
-0.24198772 -0.27342093 0.93095807 140.77478058  
0.76023406 0.54275501 0.35701703 123.82301808  
Axis -0.29846577 -0.52566327 -0.79661553  
Axis point 51.77701818 12.60377529 0.00000000  
Rotation angle (degrees) 139.43344011  
Shift along axis -213.43600027  
  

> view matrix models
> #4,-0.31042,-0.61388,-0.7258,49.324,-0.85602,0.51253,-0.067386,112.19,0.41337,0.60038,-0.68459,170.43

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07555, steps = 120  
shifted from previous position = 2.65  
rotated from previous position = 5.9 degrees  
atoms outside contour = 1713, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.52061114 0.85148061 0.06280771 138.17983551  
-0.25398717 -0.22468485 0.94074823 139.31828735  
0.81514082 0.47381165 0.33323859 119.22099222  
Axis -0.32967215 -0.53117123 -0.78049561  
Axis point 50.92820165 10.98426105 0.00000000  
Rotation angle (degrees) 134.91271143  
Shift along axis -212.60737109  
  

> view matrix models
> #4,-0.37999,-0.59827,-0.70546,46.702,-0.80231,0.59272,-0.070504,109.52,0.46033,0.53921,-0.70523,170.3

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08118, steps = 116  
shifted from previous position = 1.37  
rotated from previous position = 12.7 degrees  
atoms outside contour = 1635, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.59691409 0.77502686 0.20742935 137.41307815  
-0.05545499 -0.29777904 0.95302276 143.38885738  
0.80038635 0.55736972 0.22072761 122.77044875  
Axis -0.36150574 -0.54178116 -0.75880615  
Axis point 44.15615841 16.54103842 0.00000000  
Rotation angle (degrees) 146.82286471  
Shift along axis -220.51996986  
  

> volume #1 step 1

> view matrix models
> #4,-0.42652,-0.60864,-0.66905,46.98,-0.86566,0.48909,0.10693,107.68,0.26214,0.62478,-0.73548,172.28

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07903, steps = 120  
shifted from previous position = 2.76  
rotated from previous position = 6.84 degrees  
atoms outside contour = 1668, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.49990289 0.83053014 0.24559474 135.51122221  
-0.03286132 -0.30155482 0.95288237 138.32802104  
0.86545781 0.46827809 0.17804044 125.68945152  
Axis -0.41485648 -0.53064783 -0.73912582  
Axis point 36.89776708 14.62478940 0.00000000  
Rotation angle (degrees) 144.26320732  
Shift along axis -222.52149208  
  

> view matrix models
> #4,-0.52473,-0.55297,-0.64722,47.17,-0.80232,0.57536,0.1589,110.53,0.28452,0.60265,-0.74556,170.91

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08118, steps = 88  
shifted from previous position = 1.66  
rotated from previous position = 6.84 degrees  
atoms outside contour = 1647, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.59691494 0.77506158 0.20729713 137.41339972  
-0.05555353 -0.29768537 0.95304628 143.38632266  
0.80037888 0.55737148 0.22075025 122.77073860  
Axis -0.36146732 -0.54180773 -0.75880548  
Axis point 44.15886968 16.53337593 0.00000000  
Rotation angle (degrees) 146.81682072  
Shift along axis -220.51738052  
  

> view matrix models
> #4,-0.42648,-0.6087,-0.66903,42.96,-0.86565,0.48912,0.1068,107.99,0.26223,0.6247,-0.73552,176.01

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08033, steps = 96  
shifted from previous position = 3.16  
rotated from previous position = 8.81 degrees  
atoms outside contour = 1633, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.63798257 0.75422544 0.15531328 136.12375073  
-0.18489569 -0.34582884 0.91989999 137.20919739  
0.74752379 0.55816340 0.36008580 127.92240453  
Axis -0.30978647 -0.50716133 -0.80425104  
Axis point 49.10494444 14.32106331 0.00000000  
Rotation angle (degrees) 144.27833383  
Shift along axis -214.63822165  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.065253,-0.95269,-0.29684,53.167,-0.53736,0.28421,-0.79402,102.32,0.84082,0.1077,-0.53049,183.14

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0815, steps = 92  
shifted from previous position = 3.82  
rotated from previous position = 5.85 degrees  
atoms outside contour = 1658, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.31758768 0.53932577 -0.77991395 126.87689518  
-0.75343036 0.35587475 0.55289768 128.97286966  
0.57574365 0.76320434 0.29332298 127.08390693  
Axis 0.11156805 -0.71917873 -0.68580939  
Axis point 66.85734786 -0.00000000 73.44320584  
Rotation angle (degrees) 109.52359240  
Shift along axis -165.75447352  
  

> view matrix models
> #4,0.72635,0.68731,-0.0049786,52.826,0.66421,-0.70004,0.26223,119.79,0.17675,-0.19378,-0.96499,175.22

> view matrix models
> #4,0.18439,0.27266,0.94428,60.349,-0.48369,-0.81118,0.32868,114.2,0.8556,-0.51734,-0.017694,189.45

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08655, steps = 96  
shifted from previous position = 2.15  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1616, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.34435708 -0.91907736 -0.19161155 136.53282530  
-0.87153234 0.38882534 -0.29874107 119.85443168  
0.34906958 0.06412206 -0.93490041 115.96605565  
Axis 0.55577929 -0.82813422 0.07282234  
Axis point 96.62461386 0.00000000 77.92747253  
Rotation angle (degrees) 160.94683597  
Shift along axis -14.92852115  
  

> view matrix models
> #4,0.5244,-0.8376,-0.15309,58.324,0.69285,0.31525,0.64852,118.15,-0.49494,-0.44615,0.74565,187.96

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08155, steps = 88  
shifted from previous position = 3.02  
rotated from previous position = 5.61 degrees  
atoms outside contour = 1674, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39462732 0.55714882 0.73065345 143.70402308  
0.13862139 0.74998853 -0.64676217 118.30511361  
-0.90832449 0.35651422 0.21873322 116.71859061  
Axis 0.51012737 0.83335711 -0.21280507  
Axis point 142.35785551 -0.00000000 23.94375517  
Rotation angle (degrees) 79.53268821  
Shift along axis 147.05945511  
  

> view matrix models
> #4,0.59879,-0.78592,-0.15418,60.866,0.6917,0.41042,0.59423,118.16,-0.40374,-0.46246,0.78938,190.78

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08155, steps = 84  
shifted from previous position = 0.0671  
rotated from previous position = 3.31 degrees  
atoms outside contour = 1681, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39459432 0.55733020 0.73053292 143.69828168  
0.13873468 0.74979493 -0.64696232 118.31324861  
-0.90832153 0.35663792 0.21854379 116.70774711  
Axis 0.51027211 0.83326177 -0.21283137  
Axis point 142.32423705 0.00000000 23.97207520  
Rotation angle (degrees) 79.54480772  
Shift along axis 147.07206226  
  

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,261.02,0.91796,0.004275,-0.39665,34.882,0.17518,-0.90151,0.3957,225.6

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08155, steps = 68  
shifted from previous position = 2.98  
rotated from previous position = 0.00834 degrees  
atoms outside contour = 1679, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39459952 0.55740598 0.73047230 143.69583958  
0.13879501 0.74970232 -0.64705670 118.31674323  
-0.90831005 0.35671418 0.21846701 116.70220688  
Axis 0.51035101 0.83321228 -0.21283595  
Axis point 142.30915935 0.00000000 23.98522829  
Rotation angle (degrees) 79.54959083  
Shift along axis 147.07985461  
  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,262.87,0.91796,0.004275,-0.39665,36.863,0.17518,-0.90151,0.3957,219.02

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,267.88,0.91796,0.004275,-0.39665,20.132,0.17518,-0.90151,0.3957,224.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0735, steps = 96  
shifted from previous position = 3.34  
rotated from previous position = 11 degrees  
atoms outside contour = 1803, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.28983482 0.69770675 0.65513438 160.01756592  
0.07811356 0.66498765 -0.74275816 120.91123681  
-0.95388366 0.26645205 0.13823622 118.13863440  
Axis 0.50515223 0.80538131 -0.31013250  
Axis point 147.48649067 0.00000000 24.78690374  
Rotation angle (degrees) 87.33310195  
Shift along axis 141.57425096  
  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,269.55,0.91796,0.004275,-0.39665,23.547,0.17518,-0.90151,0.3957,221.23

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07426, steps = 108  
shifted from previous position = 4.43  
rotated from previous position = 13.8 degrees  
atoms outside contour = 1805, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.44589824 0.56892088 0.69101649 154.98904290  
-0.08513659 0.79547047 -0.59998207 118.42303259  
-0.89102554 0.20870016 0.40313487 126.59448391  
Axis 0.42712662 0.83559677 -0.34545751  
Axis point 188.09165266 0.00000000 1.58453866  
Rotation angle (degrees) 71.20084154  
Shift along axis 121.42083301  
  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,264.61,0.91796,0.004275,-0.39665,29.199,0.17518,-0.90151,0.3957,221.73

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08284, steps = 140  
shifted from previous position = 7.73  
rotated from previous position = 10.4 degrees  
atoms outside contour = 1611, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.30349172 0.66447755 0.68290728 141.37280493  
-0.06310548 0.72915521 -0.68143259 115.74635024  
-0.95074206 0.16371396 0.26322474 117.25436756  
Axis 0.42727460 0.82591222 -0.36783886  
Axis point 152.31310216 0.00000000 18.95027547  
Rotation angle (degrees) 81.49267624  
Shift along axis 112.87061995  
  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,258.37,0.91796,0.004275,-0.39665,22.484,0.17518,-0.90151,0.3957,229.41

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07691, steps = 100  
shifted from previous position = 6.36  
rotated from previous position = 9.07 degrees  
atoms outside contour = 1739, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.22553359 0.69403154 0.68370667 141.82908981  
-0.19970002 0.71981984 -0.66481523 121.90972648  
-0.95354837 0.01340193 0.30094167 112.87428524  
Axis 0.34170955 0.82490641 -0.45029325  
Axis point 153.43012951 0.00000000 15.43634442  
Rotation angle (degrees) 82.92620814  
Shift along axis 98.20193975  
  

> view matrix models
> #1,-0.3559,-0.43273,-0.8283,263.09,0.91796,0.004275,-0.39665,33.639,0.17518,-0.90151,0.3957,220.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08121, steps = 68  
shifted from previous position = 2.01  
rotated from previous position = 5.15 degrees  
atoms outside contour = 1630, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.14594023 0.72382992 0.67436762 135.55499460  
-0.18089158 0.68969819 -0.70113810 114.34722378  
-0.97261487 -0.01966317 0.23158945 124.07775314  
Axis 0.34093013 0.82395687 -0.45261653  
Axis point 145.92726169 -0.00000000 26.40486048  
Rotation angle (degrees) 88.07370075  
Shift along axis 84.27232056  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.83196,-0.53977,-0.12843,68.869,0.51898,0.67519,0.52418,123.73,-0.19623,-0.50275,0.84187,187.48

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07801, steps = 88  
shifted from previous position = 2.54  
rotated from previous position = 8.89 degrees  
atoms outside contour = 1714, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13475671 0.64440981 0.75271283 147.07906235  
-0.26940608 0.75485315 -0.59801093 116.97921749  
-0.95355177 -0.12219943 0.27532945 113.24955880  
Axis 0.23871893 0.85604837 -0.45846969  
Axis point 153.31240190 0.00000000 7.26128081  
Rotation angle (degrees) 85.26946423  
Shift along axis 83.32893451  
  

> view matrix models
> #4,0.85845,-0.45477,-0.23717,65.631,0.50078,0.64324,0.57919,113.55,-0.11084,-0.61598,0.77993,190.66

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08498, steps = 60  
shifted from previous position = 1.76  
rotated from previous position = 5.33 degrees  
atoms outside contour = 1608, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.09474062 0.67890893 0.72808438 138.05050452  
-0.20534419 0.72897310 -0.65301759 112.81597517  
-0.97409341 -0.08764061 0.20847337 120.85485709  
Axis 0.28272511 0.85119914 -0.44218383  
Axis point 143.97603146 0.00000000 21.09773284  
Rotation angle (degrees) 89.07786828  
Shift along axis 81.61914130  
  

> view matrix models
> #4,0.86198,-0.48448,-0.14922,61.593,0.47247,0.66109,0.58287,109.45,-0.18374,-0.57293,0.79875,184.58

> view matrix models
> #4,0.86198,-0.48448,-0.14922,57.71,0.47247,0.66109,0.58287,120.37,-0.18374,-0.57293,0.79875,185.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08079, steps = 112  
shifted from previous position = 2.12  
rotated from previous position = 10 degrees  
atoms outside contour = 1666, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.22473953 0.74287352 0.63057994 144.26792063  
-0.20703171 0.66876240 -0.71406912 120.41388773  
-0.95217120 0.02992952 0.30409572 121.46802984  
Axis 0.37382831 0.79526648 -0.47728778  
Axis point 158.55031927 0.00000000 20.51511027  
Rotation angle (degrees) 84.32999398  
Shift along axis 91.71735466  
  

> view matrix models
> #4,0.79829,-0.57857,-0.16731,61.487,0.5831,0.67291,0.45517,118.92,-0.15077,-0.46092,0.87454,193.12

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08091, steps = 100  
shifted from previous position = 2.95  
rotated from previous position = 11.6 degrees  
atoms outside contour = 1676, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.03685245 0.77378704 0.63237292 142.10222091  
-0.14770689 0.63006991 -0.76236118 114.55657387  
-0.98834435 -0.06531096 0.13751330 121.35930998  
Axis 0.35020334 0.81426071 -0.46296557  
Axis point 136.35989899 0.00000000 31.07436355  
Rotation angle (degrees) 95.61147211  
Shift along axis 86.85840708  
  

> ui mousemode right "rotate selected models"

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08091, steps = 40  
shifted from previous position = 0.0118  
rotated from previous position = 0.0123 degrees  
atoms outside contour = 1676, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.03680650 0.77392007 0.63221277 142.09177102  
-0.14768435 0.62990732 -0.76249990 114.56441279  
-0.98834943 -0.06530298 0.13748057 121.35742255  
Axis 0.35028122 0.81419250 -0.46302660  
Axis point 136.34378075 0.00000000 31.09450907  
Rotation angle (degrees) 95.61841756  
Shift along axis 86.85784928  
  

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.13677,-0.9675,-0.21269,58.223,-0.98289,-0.15927,0.092491,107.93,-0.12336,0.19641,-0.97273,170.96

> view matrix models
> #4,0.52847,-0.83839,0.13349,63.224,-0.80749,-0.54495,-0.22579,107.56,0.26205,0.011532,-0.96499,174.04

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08064, steps = 72  
shifted from previous position = 2.16  
rotated from previous position = 5.51 degrees  
atoms outside contour = 1659, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.87072753 -0.28386042 -0.40156795 129.48707122  
-0.47971661 0.31063809 0.82059487 129.61857987  
-0.10819211 0.90715337 -0.40665370 116.77417614  
Axis 0.23831538 -0.80773094 -0.53923697  
Axis point 81.42768731 0.00000000 24.30795860  
Rotation angle (degrees) 169.53674348  
Shift along axis -136.80713048  
  

> view matrix models
> #4,0.5741,-0.61522,0.54029,67.214,-0.6799,-0.72587,-0.1041,108.58,0.45623,-0.30758,-0.83501,176.51

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.5741,-0.61522,0.54029,72.329,-0.6799,-0.72587,-0.1041,121.7,0.45623,-0.30758,-0.83501,171.57

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07777, steps = 76  
shifted from previous position = 3.65  
rotated from previous position = 6.16 degrees  
atoms outside contour = 1709, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74546733 -0.43021400 -0.50911134 137.31510672  
-0.66575082 0.51779255 0.53727713 126.66774611  
0.03246991 0.73946385 -0.67241275 107.59582959  
Axis 0.32389603 -0.86759419 -0.37732172  
Axis point 86.06692892 0.00000000 42.08726823  
Rotation angle (degrees) 161.81316132  
Shift along axis -106.01862671  
  

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07777, steps = 76  
shifted from previous position = 3.65  
rotated from previous position = 6.16 degrees  
atoms outside contour = 1709, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.74546733 -0.43021400 -0.50911134 137.31510672  
-0.66575082 0.51779255 0.53727713 126.66774611  
0.03246991 0.73946385 -0.67241275 107.59582959  
Axis 0.32389603 -0.86759419 -0.37732172  
Axis point 86.06692892 0.00000000 42.08726823  
Rotation angle (degrees) 161.81316132  
Shift along axis -106.01862671  
  

> view matrix models
> #4,0.5265,-0.68345,0.50566,71.77,-0.70003,-0.68602,-0.19833,110.77,0.48244,-0.24955,-0.83963,174.26

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08133, steps = 164  
shifted from previous position = 2.61  
rotated from previous position = 3.52 degrees  
atoms outside contour = 1603, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.73020400 -0.42467598 -0.53521249 132.16508847  
-0.68311420 0.46816803 0.56051197 125.88788290  
0.01253341 0.77489934 -0.63196037 107.78533605  
Axis 0.33368833 -0.85255215 -0.40225232  
Axis point 84.43755863 0.00000000 40.42450847  
Rotation angle (degrees) 161.26213267  
Shift along axis -106.58093849  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.50338,0.73791,0.44955,65.886,-0.86167,0.38998,0.32473,112.46,0.064311,-0.55083,0.83214,187.68

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0788, steps = 64  
shifted from previous position = 1.81  
rotated from previous position = 7.81 degrees  
atoms outside contour = 1635, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.97460960 0.02401521 0.22261938 134.83783267  
-0.22084100 0.06097629 -0.97340184 116.68301389  
-0.03695095 -0.99785027 -0.05412453 121.47737987  
Axis -0.06835439 0.72572231 -0.68458367  
Axis point 80.13122970 0.00000000 107.43136318  
Rotation angle (degrees) 169.69804100  
Shift along axis -7.69872161  
  

> view matrix models
> #4,0.43476,0.75494,0.49096,64.906,-0.89849,0.40047,0.17985,109.31,-0.060833,-0.51932,0.85241,186.48

> view matrix models
> #4,0.37962,0.81152,0.44421,63.908,-0.92492,0.3434,0.16309,109.23,-0.020186,-0.47277,0.88096,186.79

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08235, steps = 72  
shifted from previous position = 1.49  
rotated from previous position = 7.89 degrees  
atoms outside contour = 1624, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99619768 0.05518305 0.06741667 133.71552169  
-0.06212135 0.09261852 -0.99376191 116.43556565  
-0.06108285 -0.99417133 -0.08883831 121.95798033  
Axis -0.00235310 0.73854424 -0.67420091  
Axis point 70.71021832 0.00000000 110.17933525  
Rotation angle (degrees) 175.00923687  
Shift along axis 3.45398873  
  

> select subtract #4

3 models selected  

> select add #1

2 models selected  

> view matrix models
> #1,-0.36514,-0.41428,-0.83369,262.73,0.91669,-0.0038632,-0.39957,34.969,0.16231,-0.91014,0.38117,224.44

> view matrix models
> #1,-0.37604,-0.41692,-0.82751,263.66,0.9117,-0.0069311,-0.41081,37.037,0.16554,-0.90892,0.38271,223.77

> view matrix models
> #1,-0.41017,-0.48301,-0.77361,269.31,0.88569,-0.0086434,-0.4642,45.738,0.21752,-0.87557,0.43134,209.08

> view matrix models
> #1,-0.78689,-0.36475,-0.49775,272.48,0.59276,-0.22254,-0.77402,135,0.17155,-0.90412,0.39132,221.66

> view matrix models
> #1,-0.45016,-0.5106,-0.73256,272.8,0.85341,-0.0045788,-0.52122,54.921,0.26278,-0.8598,0.43781,201.4

> view matrix models
> #1,-0.3993,-0.4253,-0.81221,265.74,0.89325,0.019145,-0.44916,40.301,0.20658,-0.90485,0.37225,219.58

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08235, steps = 88  
shifted from previous position = 1.31  
rotated from previous position = 3.47 degrees  
atoms outside contour = 1627, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99616279 0.05526963 0.06785987 133.73421709  
-0.06254233 0.09283653 -0.99371516 116.43032565  
-0.06122214 -0.99414619 -0.08902360 121.94470303  
Axis -0.00246633 0.73861296 -0.67412522  
Axis point 70.74420521 0.00000000 110.14161393  
Rotation angle (degrees) 174.98702336  
Shift along axis 3.46111591  
  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> volume #1 color #808080e0

> view matrix models
> #1,-0.18868,-0.51037,-0.839,252.98,0.93974,-0.34189,-0.0033579,28.353,-0.28513,-0.78907,0.54412,247.15,#4,0.27124,0.77628,0.56905,66.013,-0.91454,0.023538,0.40381,113.81,0.30007,-0.62995,0.71632,183.5

> view matrix models
> #1,-0.43261,-0.55465,-0.71078,273.28,0.88413,-0.41534,-0.21401,64.394,-0.17652,-0.72101,0.67007,214.14,#4,0.50915,0.63122,0.58508,64.175,-0.84166,0.22306,0.49178,108.18,0.17991,-0.74284,0.64485,188.3

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,0.31803,0.31026,0.89588,67.331,-0.93805,0.24009,0.24985,105.27,-0.13758,-0.91984,0.36739,184.58

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0829, steps = 164  
shifted from previous position = 4.42  
rotated from previous position = 18.8 degrees  
atoms outside contour = 1608, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95906279 -0.08087165 -0.27140067 130.37567198  
0.22440803 0.36754797 -0.90252397 116.51306602  
0.17274137 -0.92648165 -0.33435334 125.14504246  
Axis -0.04440937 -0.82328775 0.56588434  
Axis point 50.14230433 0.00000000 113.38098063  
Rotation angle (degrees) 164.35139335  
Shift along axis -30.89606178  
  

> view matrix models
> #4,0.19435,0.45435,0.86936,63.739,-0.94695,-0.14435,0.28713,105.92,0.25595,-0.87905,0.40219,191.1

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0829, steps = 76  
shifted from previous position = 0.0363  
rotated from previous position = 8.74 degrees  
atoms outside contour = 1606, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95910040 -0.08101320 -0.27122551 130.38058110  
0.22420504 0.36749484 -0.90259605 116.50834303  
0.17279617 -0.92649036 -0.33430088 125.14629399  
Axis -0.04430312 -0.82327322 0.56591381  
Axis point 50.15620521 0.00000000 113.38090317  
Rotation angle (degrees) 164.35545961  
Shift along axis -30.87244960  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.16774,0.48975,0.85558,62.225,-0.97807,-0.025985,0.20663,101.38,0.12343,-0.87148,0.47465,184.03

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08008, steps = 96  
shifted from previous position = 1.93  
rotated from previous position = 3.57 degrees  
atoms outside contour = 1697, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.94243154 -0.06391496 -0.32823415 127.80322433  
0.28137540 0.37882688 -0.88165644 125.28000496  
0.18069495 -0.92325785 -0.33903430 122.89557136  
Axis -0.06748953 -0.82563011 0.56016076  
Axis point 44.71019851 0.00000000 115.89254444  
Rotation angle (degrees) 162.04882204  
Shift along axis -43.21904705  
  

> view matrix models
> #4,0.12321,0.47377,0.87199,62.059,-0.98877,-0.016266,0.14854,101.73,0.084559,-0.8805,0.46644,188.54

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08506, steps = 144  
shifted from previous position = 1.38  
rotated from previous position = 13.3 degrees  
atoms outside contour = 1578, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.98238381 -0.03097233 -0.18428985 130.61369863  
0.17411858 0.20639537 -0.96285184 118.23884943  
0.06785834 -0.97797835 -0.19736662 125.12842253  
Axis -0.04648928 -0.77494307 0.63031895  
Axis point 54.52187805 0.00000000 117.50528190  
Rotation angle (degrees) 170.63703660  
Shift along axis -18.82969840  
  

> view matrix models
> #4,0.28018,0.59405,0.75406,60.843,-0.9554,0.096188,0.27922,98.903,0.093336,-0.79866,0.59451,191.35

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08431, steps = 72  
shifted from previous position = 4.45  
rotated from previous position = 5.14 degrees  
atoms outside contour = 1573, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99484567 -0.00397967 -0.10132253 126.93733622  
0.09793300 0.22136975 -0.97026004 118.59767735  
0.02629106 -0.97518182 -0.21983899 123.44137140  
Axis -0.03012326 -0.78104618 0.62374631  
Axis point 57.63048434 0.00000000 112.38642965  
Rotation angle (degrees) 175.31405587  
Shift along axis -19.45792940  
  

> view matrix models
> #4,0.35737,0.57208,0.73825,64.289,-0.92588,0.11324,0.36046,102.68,0.12261,-0.81234,0.57014,194.22

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08228, steps = 68  
shifted from previous position = 3.07  
rotated from previous position = 7.55 degrees  
atoms outside contour = 1575, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.98954360 -0.00619774 -0.14410078 125.64781023  
0.13337523 0.34099096 -0.93055693 114.46499058  
0.05490442 -0.94004614 -0.33659880 123.36904794  
Axis -0.03900906 -0.81808787 0.57376871  
Axis point 54.89816677 0.00000000 106.47186804  
Rotation angle (degrees) 173.01391709  
Shift along axis -27.75852350  
  

> view matrix models
> #4,0.31508,0.48172,0.81772,65.606,-0.94203,0.054071,0.33113,107.12,0.1153,-0.87466,0.47083,194.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08511, steps = 116  
shifted from previous position = 4.84  
rotated from previous position = 13.2 degrees  
atoms outside contour = 1543, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95761940 0.10228266 -0.26926444 126.93407284  
0.28480800 0.47581742 -0.83215514 117.18376322  
0.04300567 -0.87357658 -0.48478291 123.40447059  
Axis -0.11377460 -0.85773004 0.50135270  
Axis point 47.66852040 0.00000000 102.41811434  
Rotation angle (degrees) 169.51180897  
Shift along axis -53.08474321  
  

> view matrix models
> #4,0.22574,0.31276,0.92262,61.297,-0.97416,0.079758,0.21131,112.67,-0.0074958,-0.94648,0.32268,190.54

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07539, steps = 108  
shifted from previous position = 3.04  
rotated from previous position = 8.89 degrees  
atoms outside contour = 1784, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.94837474 0.23247311 -0.21573502 137.90055107  
0.29754635 0.41673340 -0.85895252 117.04515382  
-0.10977937 -0.87880005 -0.46439096 125.33711177  
Axis -0.15762408 -0.84147319 0.51679543  
Axis point 55.10456389 0.00000000 101.02883068  
Rotation angle (degrees) 176.39036092  
Shift along axis -55.45316025  
  

> view matrix models
> #4,0.32327,0.29292,0.89983,63.422,-0.93858,0.22052,0.26541,101.13,-0.12069,-0.93036,0.34622,187.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08438, steps = 80  
shifted from previous position = 3.34  
rotated from previous position = 1.12 degrees  
atoms outside contour = 1617, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95195521 0.21368421 -0.21936347 129.61218273  
0.29204519 0.41792701 -0.86025962 117.15327786  
-0.09214597 -0.88299268 -0.46025324 123.87468388  
Axis -0.15041643 -0.84175224 0.51848632  
Axis point 50.92671950 0.00000000 100.74919161  
Rotation angle (degrees) 175.66619455  
Shift along axis -53.88250645  
  

> view matrix models
> #4,0.31534,0.30337,0.89918,64.12,-0.94323,0.20431,0.26185,104.06,-0.10427,-0.93071,0.35058,191.07

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08439, steps = 56  
shifted from previous position = 1.28  
rotated from previous position = 0.0282 degrees  
atoms outside contour = 1615, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.95210331 0.21341128 -0.21898609 129.60761970  
0.29158154 0.41798382 -0.86038929 117.13790064  
-0.09208414 -0.88303179 -0.46019057 123.89128808  
Axis -0.15019304 -0.84177038 0.51852163  
Axis point 50.95042094 0.00000000 100.74787434  
Rotation angle (degrees) 175.67705775  
Shift along axis -53.82906400  
  

> view matrix models
> #4,0.31561,0.30348,0.89905,62.481,-0.94318,0.20405,0.26223,107.91,-0.10387,-0.93073,0.35064,185.7

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.4896,0.68592,0.53834,58.499,-0.86318,0.29392,0.41053,109.4,0.12336,-0.66568,0.73597,189.55

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08434, steps = 116  
shifted from previous position = 5.15  
rotated from previous position = 10 degrees  
atoms outside contour = 1610, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99445999 0.04242166 -0.09617549 132.02294699  
0.10037064 0.11142173 -0.98869152 119.48193165  
-0.03122590 -0.99286736 -0.11506235 122.67816542  
Axis -0.04791916 -0.74531859 0.66498418  
Axis point 60.24252869 0.00000000 116.56162851  
Rotation angle (degrees) 177.50273495  
Shift along axis -13.79949464  
  

> view matrix models
> #4,0.41281,0.62317,0.66427,62.734,-0.90681,0.2129,0.36381,105.37,0.085293,-0.75255,0.65298,186.91

> view matrix models
> #4,-0.54574,0.82308,0.15719,51.55,-0.82569,-0.49622,-0.26834,102.84,-0.14286,-0.27623,0.95041,186.4

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07748, steps = 92  
shifted from previous position = 2.84  
rotated from previous position = 6.36 degrees  
atoms outside contour = 1731, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53674201 -0.67559051 -0.50545570 135.04153839  
0.74857045 -0.10489249 -0.65470592 127.84688157  
0.38929460 -0.72977738 0.56202730 127.81305102  
Axis -0.04459032 -0.53145633 0.84591127  
Axis point 23.71265992 148.20241159 0.00000000  
Rotation angle (degrees) 122.67027036  
Shift along axis 34.15191924  
  

> view matrix models
> #4,0.681,-0.40497,0.61011,69.083,-0.60066,0.16766,0.78173,112.68,-0.41887,-0.89883,-0.12908,174.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08011, steps = 72  
shifted from previous position = 2.26  
rotated from previous position = 11.1 degrees  
atoms outside contour = 1623, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.85993703 0.38585279 0.33410466 134.35365908  
0.12141426 0.79044830 -0.60037493 120.40002277  
-0.49574880 -0.47571957 -0.72658380 110.14159714  
Axis 0.14167912 0.94318372 -0.30055200  
Axis point 75.34109176 0.00000000 59.47791919  
Rotation angle (degrees) 153.90113192  
Shift along axis 99.49117276  
  

> view matrix models
> #4,0.95077,0.034254,0.308,66.806,-0.30358,-0.096663,0.94789,115.15,0.062241,-0.99473,-0.081506,179.8

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07776, steps = 92  
shifted from previous position = 2.54  
rotated from previous position = 7.95 degrees  
atoms outside contour = 1729, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.59438056 0.09934098 0.79802451 141.01632771  
-0.52329705 0.70572531 -0.47761069 115.75035735  
-0.61063241 -0.70148638 -0.36748457 114.58512199  
Axis -0.14384997 0.90512395 -0.40007228  
Axis point 114.04198914 -0.00000000 44.17346955  
Rotation angle (degrees) 128.90786682  
Shift along axis 38.64089491  
  

> view matrix models
> #4,0.22958,0.9375,0.2615,59.38,-0.64631,-0.054038,0.76116,111.66,0.72772,-0.34375,0.59351,189.66

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0834, steps = 72  
shifted from previous position = 3.94  
rotated from previous position = 7 degrees  
atoms outside contour = 1595, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.85229551 -0.34753098 0.39091504 134.02232447  
-0.29652263 -0.29464225 -0.90843836 118.65574829  
0.43089057 -0.89017310 0.14807147 127.47678625  
Axis 0.27127416 -0.59371319 0.75757176  
Axis point 42.45662114 110.58101990 0.00000000  
Rotation angle (degrees) 178.07073352  
Shift along axis 62.48212428  
  

> view matrix models
> #4,-0.27828,0.94683,-0.1615,52.261,-0.7184,-0.093566,0.68931,106.74,0.63755,0.30784,0.70623,187.83

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0808, steps = 132  
shifted from previous position = 2.83  
rotated from previous position = 15.7 degrees  
atoms outside contour = 1649, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.58603351 -0.52747426 0.61508993 136.23142744  
0.17138154 -0.82261614 -0.54215408 125.69421661  
0.79195523 -0.21230540 0.57247998 131.77882465  
Axis 0.41607220 -0.22309846 0.88153899  
Axis point 18.49719886 88.42825158 0.00000000  
Rotation angle (degrees) 156.64768492  
Shift along axis 144.80809579  
  

> view matrix models
> #4,0.36891,0.91471,0.16497,60.195,-0.63026,0.11573,0.76771,105.51,0.68314,-0.38719,0.6192,192.22

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08189, steps = 104  
shifted from previous position = 2.38  
rotated from previous position = 4.41 degrees  
atoms outside contour = 1631, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.80983038 -0.28995947 0.50999829 131.90071510  
-0.42759895 -0.30345043 -0.85151451 116.94656647  
0.40166390 -0.90765706 0.12175701 130.35673829  
Axis -0.30522644 0.58897438 -0.74829540  
Axis point 44.21532240 106.36079633 0.00000000  
Rotation angle (degrees) 174.72312611  
Shift along axis -68.92640231  
  

> view matrix models
> #4,-0.68546,0.62892,0.36688,56.155,-0.62167,-0.76784,0.15477,102.15,0.37904,-0.12199,0.9173,193.94

> view matrix models
> #4,-0.45986,0.6123,0.64313,60.139,-0.8598,-0.12597,-0.49485,91.966,-0.22198,-0.78053,0.58438,190.06

> view matrix models
> #4,0.28236,0.93277,0.22407,59.17,-0.95791,0.28677,0.013316,94.463,-0.051834,-0.21839,0.97448,192.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08352, steps = 92  
shifted from previous position = 1.28  
rotated from previous position = 8.51 degrees  
atoms outside contour = 1632, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.96436279 -0.16182732 -0.20932350 123.53609605  
0.25553125 -0.36448105 -0.89546487 119.87538683  
0.06861623 -0.91704170 0.39284390 130.08830865  
Axis -0.04299024 -0.55377443 0.83155620  
Axis point 54.39059943 112.84591504 0.00000000  
Rotation angle (degrees) 165.46624617  
Shift along axis 36.48096987  
  

> view matrix models
> #4,0.66514,0.72902,0.1616,62.871,-0.73744,0.60732,0.29554,97.496,0.11731,-0.31575,0.94156,193.5

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07856, steps = 108  
shifted from previous position = 1.95  
rotated from previous position = 7.17 degrees  
atoms outside contour = 1689, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.96668212 0.24112783 -0.08592461 124.13210057  
-0.04675939 -0.49635850 -0.86685742 119.74165182  
-0.25167286 -0.83395779 0.49109588 130.14413611  
Axis 0.09855583 0.49652401 -0.86240980  
Axis point 76.31803547 91.09223111 0.00000000  
Rotation angle (degrees) 170.39187302  
Shift along axis -40.54903082  
  

> view matrix models
> #4,0.50355,0.47986,0.71845,66.332,-0.8243,0.51592,0.23314,97.16,-0.25879,-0.70962,0.65534,190.38

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0813, steps = 152  
shifted from previous position = 2.03  
rotated from previous position = 6.31 degrees  
atoms outside contour = 1631, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.92486067 0.29814583 -0.23609699 123.59868261  
0.23426567 -0.04241343 -0.97124698 117.01104780  
-0.29958692 -0.95357756 -0.03061882 126.60803427  
Axis 0.19251601 0.69175038 -0.69600216  
Axis point 81.04960453 119.43714961 0.00000000  
Rotation angle (degrees) 177.36972814  
Shift along axis 16.61769661  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.48311,0.57233,0.6626,65.018,-0.85089,0.48529,0.20121,105.44,-0.2064,-0.66101,0.72144,191.08

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08215, steps = 84  
shifted from previous position = 1.21  
rotated from previous position = 12 degrees  
atoms outside contour = 1633, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.88949288 0.33815035 -0.30733816 129.84135420  
0.36211470 0.11140504 -0.92545224 116.46476491  
-0.27870298 -0.93447485 -0.22154320 120.90015461  
Axis -0.23487532 -0.74542708 0.62383656  
Axis point 45.62510880 0.00000000 109.95695897  
Rotation angle (degrees) 178.89943899  
Shift along axis -41.89058305  
  

> view matrix models
> #4,0.38205,0.45613,0.80373,66.55,-0.87719,0.45269,0.16006,103.28,-0.29083,-0.76617,0.57306,188.73

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.80419,-0.24033,0.54361,60.106,-0.53769,0.68394,-0.49307,98.136,-0.2533,-0.68882,-0.67924,176.82

> view matrix models
> #4,-0.81341,-0.34806,-0.46608,50.988,-0.092522,0.86845,-0.48707,100.01,0.57429,-0.35307,-0.7386,179.68

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08023, steps = 96  
shifted from previous position = 5.23  
rotated from previous position = 7.68 degrees  
atoms outside contour = 1643, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.25776322 0.95488454 -0.14749111 130.71044621  
0.16507446 0.10688294 0.98047256 133.06000572  
0.95200238 -0.27707678 -0.13007656 130.81578867  
Axis -0.68059050 -0.59505007 -0.42744823  
Axis point 0.00000000 26.59082027 24.49067295  
Rotation angle (degrees) 112.50197010  
Shift along axis -224.05463042  
  

> view matrix models
> #4,0.75998,-0.075068,0.64559,68.387,0.57412,0.54314,-0.61269,100.64,-0.30466,0.83628,0.45588,184.51

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07751, steps = 80  
shifted from previous position = 1.43  
rotated from previous position = 7.5 degrees  
atoms outside contour = 1734, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.30700887 0.25973700 -0.91557754 126.02496400  
-0.46938340 -0.79556648 -0.38308380 119.47204522  
-0.82790384 0.54736703 -0.12232973 116.09025582  
Axis 0.78496226 -0.07396473 -0.61511257  
Axis point 0.00000000 38.99659920 132.69338630  
Rotation angle (degrees) 143.65312448  
Shift along axis 18.67954660  
  

> view matrix models
> #4,-0.62357,-0.044886,-0.78048,48.225,0.63278,-0.61524,-0.47018,107.15,-0.45908,-0.78706,0.41205,189.99

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08237, steps = 180  
shifted from previous position = 3.77  
rotated from previous position = 10.2 degrees  
atoms outside contour = 1627, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.96595649 -0.22462540 -0.12834128 138.69163720  
0.25416721 0.91650579 0.30889507 125.16114197  
0.04823985 -0.33099934 0.94239712 137.92551877  
Axis -0.78182073 -0.21574620 0.58498712  
Axis point 0.00000000 551.37919953 -217.91213246  
Rotation angle (degrees) 24.15669155  
Shift along axis -54.75038628  
  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.59314,-0.1759,-0.78565,46.875,0.73814,-0.50843,-0.44345,110.21,-0.32144,-0.84295,0.43141,183.99

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08022, steps = 108  
shifted from previous position = 1.59  
rotated from previous position = 7.49 degrees  
atoms outside contour = 1642, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98863989 -0.12035032 -0.09003863 142.65492872  
0.13994153 0.95561648 0.25925569 127.81569004  
0.05484089 -0.26891066 0.96160258 130.68789970  
Axis -0.87100963 -0.23892369 0.42925247  
Axis point 0.00000000 684.21516058 -284.92142166  
Rotation angle (degrees) 17.64942477  
Shift along axis -98.69390975  
  

> view matrix models
> #4,-0.54429,-0.28683,-0.78833,42.767,0.80423,-0.44576,-0.39308,113.02,-0.23866,-0.84795,0.47331,182.39

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08073, steps = 112  
shifted from previous position = 2.64  
rotated from previous position = 5.06 degrees  
atoms outside contour = 1708, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.97212066 -0.17207174 -0.15928820 145.57880337  
0.20764324 0.94731370 0.24388731 131.14242762  
0.10892978 -0.27016301 0.95663276 134.01937070  
Axis -0.74168032 -0.38698934 0.54785906  
Axis point 0.00000000 709.04800572 -249.19359155  
Rotation angle (degrees) 20.27610025  
Shift along axis -85.29992835  
  

> view matrix models
> #4,-0.61314,-0.25896,-0.74632,49.663,0.74993,-0.48778,-0.44686,103.97,-0.24832,-0.83367,0.49328,188.6

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08194, steps = 132  
shifted from previous position = 3.46  
rotated from previous position = 14.1 degrees  
atoms outside contour = 1639, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.92493881 -0.24879052 -0.28738729 132.95339069  
0.35016427 0.85184667 0.38954104 128.89512690  
0.14789579 -0.46093439 0.87502361 136.31022847  
Axis -0.75422172 -0.38601932 0.53116727  
Axis point 0.00000000 411.59741693 -97.42074585  
Rotation angle (degrees) 34.31969353  
Shift along axis -77.62881288  
  

> view matrix models
> #4,-0.69948,-0.037225,-0.71368,51.297,0.64068,-0.47513,-0.60314,105.63,-0.31664,-0.87913,0.35619,187.16

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.0815, steps = 128  
shifted from previous position = 3.98  
rotated from previous position = 14.3 degrees  
atoms outside contour = 1667, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.85958807 -0.28577006 -0.42360809 136.34269890  
0.48629898 0.71206548 0.50643464 131.06028683  
0.15691284 -0.64132537 0.75105268 132.76292172  
Axis -0.76509714 -0.38697541 0.51466144  
Axis point 0.00000000 287.81230688 -28.90136780  
Rotation angle (degrees) 48.59684905  
Shift along axis -86.70456164  
  

> view matrix models
> #4,-0.75312,0.18452,-0.63147,48.16,0.52443,-0.41116,-0.7456,101.54,-0.39722,-0.89269,0.21289,180.38

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.08827,-0.10591,-0.99045,50.88,0.99594,-0.0080379,0.089619,110.47,-0.017453,-0.99434,0.10477,182

> view matrix models
> #4,0.52749,-0.77507,-0.34789,62.279,0.65712,0.11267,0.74532,114.17,-0.53847,-0.62175,0.56875,181.78

> view matrix models
> #4,0.91813,0.38107,-0.10875,61.982,0.15768,-0.099547,0.98246,114.39,0.36356,-0.91917,-0.15149,181.48

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08035, steps = 100  
shifted from previous position = 0.959  
rotated from previous position = 5.39 degrees  
atoms outside contour = 1679, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.40034361 -0.10585739 0.91023030 140.40065664  
-0.82852606 0.46618168 -0.31019220 119.24037733  
-0.39149656 -0.87833299 -0.27433846 118.50219794  
Axis -0.35651645 0.81685217 -0.45348490  
Axis point 131.36728584 0.00000000 50.35830714  
Rotation angle (degrees) 127.17490587  
Shift along axis -6.39234005  
  

> view matrix models
> #4,0.59131,0.30362,0.74711,68.062,-0.58936,-0.46966,0.65732,108.17,0.55046,-0.829,-0.098769,183.52

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07762, steps = 116  
shifted from previous position = 2.22  
rotated from previous position = 8.67 degrees  
atoms outside contour = 1733, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.86294436 -0.37154055 0.34246847 134.90553384  
-0.50270762 0.69981064 -0.50749395 116.66361845  
-0.05110850 -0.61010055 -0.79067391 114.61956235  
Axis -0.24009461 0.92095155 -0.30692477  
Axis point 90.10436360 0.00000000 68.27157439  
Rotation angle (degrees) 167.66193091  
Shift along axis 39.87186552  
  

> view matrix models
> #4,-0.71862,-0.072319,-0.69163,47.632,0.63434,-0.4757,-0.60936,99.142,-0.28494,-0.87663,0.38772,189.55

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.71862,-0.072319,-0.69163,41.734,0.63434,-0.4757,-0.60936,104.06,-0.28494,-0.87663,0.38772,187.88

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08204, steps = 80  
shifted from previous position = 4.02  
rotated from previous position = 6.14 degrees  
atoms outside contour = 1654, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93542276 -0.21497113 -0.28066290 138.08586575  
0.32669983 0.82900607 0.45389002 130.75569300  
0.13509800 -0.51627158 0.84570218 134.86626519  
Axis -0.81775510 -0.35044738 0.45657774  
Axis point 0.00000000 369.26238280 -73.94375049  
Rotation angle (degrees) 36.38341744  
Shift along axis -97.16647645  
  

> view matrix models
> #4,-0.6819,0.00014596,-0.73144,36.092,0.66243,-0.4239,-0.61765,110.29,-0.31015,-0.90571,0.28896,183.24

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07837, steps = 72  
shifted from previous position = 2.52  
rotated from previous position = 11 degrees  
atoms outside contour = 1722, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.95946224 -0.26041157 -0.10778690 151.00667345  
0.28157312 0.86914050 0.40658501 131.92583818  
-0.01219748 -0.42045286 0.90723239 138.97035955  
Axis -0.83251874 -0.09622290 0.54557648  
Axis point 0.00000000 448.23568447 -165.39525748  
Rotation angle (degrees) 29.78245805  
Shift along axis -62.59121295  
  

> view matrix models
> #4,-0.56258,-0.070563,-0.82373,41.613,0.73395,-0.50125,-0.45833,105.67,-0.38055,-0.86242,0.33378,186.82

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08204, steps = 72  
shifted from previous position = 3.82  
rotated from previous position = 11 degrees  
atoms outside contour = 1655, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.93533321 -0.21505147 -0.28089971 138.07829043  
0.32686068 0.82907436 0.45364942 130.76205752  
0.13532877 -0.51612844 0.84575265 134.85364765  
Axis -0.81745896 -0.35085323 0.45679630  
Axis point 0.00000000 369.35971032 -73.94096687  
Rotation angle (degrees) 36.38200702  
Shift along axis -97.15097946  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.89754,0.36691,-0.24456,46.975,0.0296,-0.50324,-0.86364,97.638,-0.43995,-0.78239,0.44082,186.01

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.07912, steps = 104  
shifted from previous position = 2.24  
rotated from previous position = 8.6 degrees  
atoms outside contour = 1664, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.48054342 -0.45935542 -0.74704124 130.37491847  
0.84870611 0.45811958 0.26424301 132.33548308  
0.22085276 -0.76099871 0.61000411 133.15638418  
Axis -0.53307240 -0.50325456 0.68012400  
Axis point 10.77208451 218.79770957 0.00000000  
Rotation angle (degrees) 74.07769751  
Shift along axis -45.53485356  
  

> view matrix models
> #4,-0.57071,-0.29447,0.76654,63.274,0.099067,-0.95136,-0.29171,104.53,0.81515,-0.090543,0.57213,192.17

> fitmap #4 inMap #1

Fit molecule 2qe3-assembly1.cif (#4) to map
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) using 3543 atoms  
average map value = 0.08666, steps = 68  
shifted from previous position = 2.07  
rotated from previous position = 3.22 degrees  
atoms outside contour = 1565, contour level = 0.062298  
  
Position of 2qe3-assembly1.cif (#4) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.24067597 -0.67472861 -0.69772228 129.56045750  
-0.32119539 0.62298457 -0.71324872 115.92664363  
0.91591953 0.39576701 -0.06678231 127.90751518  
Axis 0.55738995 -0.81101440 0.17768536  
Axis point 33.49246614 0.00000000 148.50226921  
Rotation angle (degrees) 95.82906030  
Shift along axis 0.92481284  
  

> ui mousemode right translate

> ui mousemode right "rotate selected models"

Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  
Opened 2qe3-assembly1.cif map 5 as #6, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6307, correlation about mean = 0.07475, overlap = 406.5  
steps = 52, shift = 2.43, angle = 2.36 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#6) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.27753913 -0.65681430 -0.70111839 127.86607492  
-0.32095377 0.62446886 -0.71205850 114.75825466  
0.90551681 0.42265069 -0.03749249 126.97174887  
Axis 0.56866089 -0.80516719 0.16831691  
Axis point 30.94641133 0.00000000 149.11986598  
Rotation angle (degrees) 93.88431964  
Shift along axis 1.68434735  
  
Average map value = 0.08636 for 3543 atoms, 1527 outside contour  

> view matrix models
> #4,-0.59229,-0.36615,0.71772,63.977,0.19262,-0.92929,-0.31513,102.66,0.78236,-0.048403,0.62094,193.94

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.59229,-0.36615,0.71772,63.622,0.19262,-0.92929,-0.31513,102.08,0.78236,-0.048403,0.62094,193.81

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.81811,-0.45471,-0.35204,52.598,0.5067,-0.85949,-0.067353,105.95,-0.27195,-0.23348,0.93356,191.4

> view matrix models
> #4,-0.61273,-0.49165,-0.61874,51.433,0.50128,-0.84706,0.17666,108.16,-0.61096,-0.20192,0.76548,187.71

> view matrix models
> #4,-0.44941,-0.48625,-0.7494,51.129,0.43222,-0.85251,0.29395,108.89,-0.7818,-0.1918,0.59329,185.05

> view matrix models
> #4,-0.27879,-0.50582,-0.81635,51.572,0.35536,-0.84405,0.40163,109.42,-0.89219,-0.17813,0.41506,182.67

> view matrix models
> #4,0.056724,-0.4682,-0.8818,52.749,0.16449,-0.86677,0.4708,109.06,-0.98475,-0.17175,0.027847,178.46

> view matrix models
> #4,0.35759,-0.42607,-0.83102,54.801,-0.0094902,-0.89147,0.45298,107.98,-0.93383,-0.1541,-0.32283,175.38

> view matrix models
> #4,0.68963,-0.17511,-0.70267,56.895,-0.048375,-0.9793,0.19656,105.71,-0.72254,-0.10157,-0.68382,172.99

> view matrix models
> #4,0.87365,0.47414,-0.10919,60.849,0.44094,-0.86643,-0.23425,104.02,-0.20567,0.15651,-0.96602,172.26

> view matrix models
> #4,0.84401,0.36914,0.38908,65.81,0.52724,-0.70404,-0.47575,101.57,0.098315,0.60668,-0.78884,173.82

> view matrix models
> #4,0.92558,-0.24358,0.28978,67.903,0.17467,-0.40435,-0.89777,94.293,0.33585,0.88157,-0.33171,178.36

> view matrix models
> #4,0.73573,-0.63619,0.23229,67.895,0.20848,-0.11359,-0.97141,92.584,0.64439,0.76312,0.049065,184.23

> view matrix models
> #4,0.49371,-0.86762,0.059063,65.821,0.3209,0.11864,-0.93965,92.568,0.80825,0.48287,0.33699,189.07

> view matrix models
> #4,0.31281,-0.94714,-0.071214,63.873,0.42513,0.20667,-0.88122,93.358,0.84936,0.24538,0.4673,191.53

> view matrix models
> #4,0.083793,-0.98279,-0.16463,61.81,0.54636,0.18348,-0.81721,94.762,0.83335,-0.021474,0.55233,193.35

> view matrix models
> #4,-0.57834,-0.68271,-0.44657,54.052,0.80179,-0.37472,-0.46552,101.89,0.15048,-0.62729,0.76411,193.9

> view matrix models
> #4,-0.50145,-0.30524,-0.80956,49.505,0.76055,-0.60158,-0.24427,104.68,-0.41245,-0.7382,0.53381,188.92

> view matrix models
> #4,-0.34911,-0.11113,-0.93047,48.442,0.67393,-0.71969,-0.1669,105.4,-0.6511,-0.68534,0.32615,185.35

> view matrix models
> #4,-0.23439,0.0045204,-0.97213,48.234,0.60226,-0.78429,-0.14886,105.42,-0.76311,-0.62037,0.18111,183.06

> view matrix models
> #4,0.023839,0.12174,-0.99228,49.057,0.4537,-0.88577,-0.097774,105.46,-0.89084,-0.44787,-0.07635,179.18

> view matrix models
> #4,0.20016,0.39541,-0.89643,49.844,0.37273,-0.87688,-0.30357,103.01,-0.9061,-0.27336,-0.32289,176.04

> view matrix models
> #4,0.57468,0.32776,-0.74988,53.685,0.094996,-0.93682,-0.33666,101.34,-0.81285,0.12224,-0.56951,172.61

> view matrix models
> #4,0.048884,0.62504,-0.77906,49.113,0.55056,-0.66765,-0.50112,101.31,-0.83336,-0.40442,-0.37676,176.5

> view matrix models
> #4,0.11239,0.98182,-0.15295,53.894,0.51593,-0.18921,-0.83547,95.968,-0.84922,0.014987,-0.52782,173.23

> view matrix models
> #4,0.04075,0.91148,0.40932,59.068,0.54786,0.32221,-0.77203,94.618,-0.83557,0.25571,-0.48624,172.7

> view matrix models
> #4,-0.12152,0.7488,0.65156,61.086,0.58465,0.58447,-0.56265,95.711,-0.80213,0.31256,-0.50881,172.45

> view matrix models
> #4,-0.26544,0.59012,0.76243,61.955,0.58792,0.72583,-0.3571,97.078,-0.76412,0.35346,-0.53961,172.21

> view matrix models
> #4,-0.40762,0.44018,0.80006,62.109,0.56971,0.80731,-0.15391,98.546,-0.71364,0.39306,-0.57984,171.96

> view matrix models
> #4,-0.51571,0.31093,0.79835,62.003,0.53112,0.84719,0.013133,99.73,-0.67227,0.4308,-0.60205,171.83

> view matrix models
> #4,-0.70381,-0.4897,0.51463,61.575,0.23896,0.51903,0.82068,107.01,-0.669,0.70057,-0.24828,174.06

> view matrix models
> #4,-0.52722,-0.43964,0.72716,64.395,0.2471,0.73944,0.62623,104.3,-0.81301,0.50984,-0.28121,173.7

> view matrix models
> #4,-0.097114,0.013462,0.99518,67.532,0.47776,0.8778,0.034748,99.496,-0.8731,0.47884,-0.091679,175.27

> view matrix models
> #4,0.34129,0.44289,0.82908,66.725,0.42,0.71723,-0.55604,94.263,-0.84091,0.53798,0.058765,176.63

> view matrix models
> #4,0.61848,0.7098,0.33715,62.589,0.21063,0.2636,-0.94135,91.306,-0.75704,0.65323,0.013527,176.21

> view matrix models
> #4,0.70413,0.70428,0.090538,60.786,0.045623,0.08237,-0.99556,90.592,-0.70861,0.70513,0.025867,176.39

> view matrix models
> #4,0.79252,0.5886,0.15956,62.432,-0.031193,0.30042,-0.9533,89.634,-0.60905,0.75053,0.25645,178.95

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.79252,0.5886,0.15956,63.002,-0.031193,0.30042,-0.9533,92.531,-0.60905,0.75053,0.25645,175.67

> view matrix models
> #4,0.79252,0.5886,0.15956,64.293,-0.031193,0.30042,-0.9533,96.717,-0.60905,0.75053,0.25645,173.59

> view matrix models
> #4,0.79252,0.5886,0.15956,64.881,-0.031193,0.30042,-0.9533,99.947,-0.60905,0.75053,0.25645,169.65

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.4778,-0.49227,0.72759,67.354,0.12432,0.78202,0.61073,113.58,-0.86963,0.38226,-0.31245,164.31

> view matrix models
> #4,-0.79448,0.14306,-0.5902,50.447,-0.58649,-0.43291,0.68455,115.21,-0.15757,0.89001,0.42785,173.31

> view matrix models
> #4,-0.6746,-0.11196,-0.72964,50.893,-0.60656,-0.47926,0.63435,114.81,-0.42071,0.8705,0.2554,170.24

> view matrix models
> #4,-0.65135,-0.62295,-0.43321,55.953,-0.52681,-0.039633,0.84906,115.47,-0.54609,0.78125,-0.30236,164.63

> view matrix models
> #4,-0.59446,-0.45758,0.66124,65.906,0.13785,0.75214,0.64442,114.1,-0.79222,0.47424,-0.38404,163.7

> view matrix models
> #4,-0.31358,0.039046,0.94876,68.177,0.35873,0.92998,0.080293,109.33,-0.87919,0.36553,-0.30563,164.39

> view matrix models
> #4,-0.13125,0.30485,0.94331,68.078,0.39149,0.89014,-0.2332,106.73,-0.91077,0.3387,-0.23618,164.97

> view matrix models
> #4,-0.35354,0.89704,0.2652,57.926,0.87661,0.41666,-0.24073,111.45,-0.32644,0.14736,-0.93366,162.6

> view matrix models
> #4,-0.93994,-0.34071,0.020499,57.373,-0.33153,0.92559,0.18267,106.3,-0.081212,0.16491,-0.98296,163.49

> view matrix models
> #4,0.24121,-0.62716,-0.7406,58.263,-0.92238,-0.38541,0.025955,106.85,-0.30171,0.67685,-0.67145,163

> view matrix models
> #4,0.84381,0.18725,-0.50291,60.61,-0.18911,-0.77328,-0.60521,106.79,-0.50221,0.60579,-0.61709,162.65

> view matrix models
> #4,0.27877,0.55127,-0.78637,53.136,0.38317,-0.81468,-0.43529,111.89,-0.88061,-0.17997,-0.43834,165.41

> view matrix models
> #4,0.86385,0.42582,0.26915,67.007,0.071292,0.42557,-0.90211,100.5,-0.49867,0.79848,0.33727,170.86

> view matrix models
> #4,0.86209,-0.42584,-0.27468,65.424,0.46232,0.88289,0.082261,110.14,0.20748,-0.19791,0.95801,184.97

> view matrix models
> #4,0.71128,-0.043249,-0.70158,58.929,0.62657,0.49136,0.60495,117.66,0.31856,-0.86988,0.3766,182.94

> view matrix models
> #4,0.73104,0.37744,-0.56843,58.544,0.56461,0.13317,0.81455,120.77,0.38314,-0.91641,-0.11575,178.87

> view matrix models
> #4,0.75651,0.65195,-0.051482,62.418,0.39699,-0.39525,0.82836,122.12,0.5197,-0.6471,-0.55783,174.37

> view matrix models
> #4,0.53567,0.70372,0.46673,65.801,0.60756,-0.70505,0.36575,120.28,0.58646,0.087648,-0.80523,169.36

> view matrix models
> #4,0.31503,0.77597,0.54647,64.969,0.78724,-0.53524,0.3062,120.06,0.5301,0.33374,-0.7795,168.25

> view matrix models
> #4,-0.47255,0.70595,-0.52757,50.561,0.49725,0.70781,0.50174,115.03,0.72762,-0.025231,-0.68551,171.78

> view matrix models
> #4,-0.54185,-0.053705,-0.83876,50.394,-0.018396,0.99848,-0.052048,105.6,0.84027,-0.012773,-0.54201,173.74

> view matrix models
> #4,-0.8745,-0.26047,-0.40916,53.37,0.12861,0.68885,-0.71341,101.52,0.46767,-0.6765,-0.5689,174.09

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.60106,0.10889,-0.79175,49.815,0.51435,0.81094,-0.27895,107.34,0.61169,-0.57491,-0.54344,174.74

> view matrix models
> #4,0.021023,0.68811,-0.72531,51.642,0.83236,0.38983,0.39396,117.29,0.55383,-0.612,-0.56456,174.36

> view matrix models
> #4,0.72756,0.46289,0.50635,68.295,0.16509,-0.83451,0.52568,119.76,0.66589,-0.29887,-0.68357,172.58

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.72756,0.46289,0.50635,66.162,0.16509,-0.83451,0.52568,113.92,0.66589,-0.29887,-0.68357,178.35

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.50948,0.15578,0.84627,69.378,-0.61016,-0.62807,0.48295,108.15,0.60674,-0.76241,-0.22494,184.26

> view matrix models
> #4,0.13514,0.40285,0.90523,66.727,-0.90514,-0.32146,0.27819,103.23,0.40307,-0.85696,0.32119,188.61

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.13514,0.40285,0.90523,65.811,-0.90514,-0.32146,0.27819,114.56,0.40307,-0.85696,0.32119,182.29

> view matrix models
> #4,0.13514,0.40285,0.90523,66.431,-0.90514,-0.32146,0.27819,104.73,0.40307,-0.85696,0.32119,187.94

> view matrix models
> #4,0.13514,0.40285,0.90523,66.558,-0.90514,-0.32146,0.27819,102.4,0.40307,-0.85696,0.32119,183.58

> ui mousemode right translate

> volume #1 step 4

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.13514,0.40285,0.90523,66.625,-0.90514,-0.32146,0.27819,107.8,0.40307,-0.85696,0.32119,182.01

> view matrix models
> #4,0.13514,0.40285,0.90523,66.631,-0.90514,-0.32146,0.27819,105.95,0.40307,-0.85696,0.32119,181.28

> view matrix models
> #4,0.13514,0.40285,0.90523,66.516,-0.90514,-0.32146,0.27819,101.68,0.40307,-0.85696,0.32119,185.26

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.06279,0.32289,0.94435,66.798,-0.91616,-0.35667,0.18287,100.86,0.39586,-0.87666,0.27342,184.85

> view matrix models
> #4,0.69532,0.465,0.548,66.148,-0.58032,-0.086575,0.80978,107.6,0.42399,-0.88107,0.20965,184.43

> view matrix models
> #4,-0.51677,0.77156,0.37101,56.155,-0.20325,-0.53153,0.82229,111.76,0.83165,0.34953,0.43149,183.76

> view matrix models
> #4,-0.87305,0.41159,0.26149,54.552,-0.076071,-0.64464,0.76069,112.39,0.48166,0.64423,0.59411,182.03

> volume #1 level 0.07121

> view matrix models
> #4,-0.84302,0.42698,0.3271,55.281,-0.044537,-0.66146,0.74866,112.53,0.53603,0.61657,0.57664,182.29

> volume #1 level 0.06994

> volume #1 step 1

> volume #1 level 0.06124

> volume #1 step 2

> view matrix models
> #4,-0.57418,-0.74604,0.33726,61.831,0.80617,-0.44328,0.39192,113.21,-0.14289,0.49692,0.85595,181.48

> view matrix models
> #4,0.24236,-0.91655,0.31812,67.11,0.95068,0.28978,0.11064,108.34,-0.19359,0.27562,0.94157,182.91

> view matrix models
> #4,0.82192,-0.5327,0.20169,67.782,0.55863,0.82304,-0.10269,101.83,-0.1113,0.19708,0.97405,184.02

> view matrix models
> #4,0.95547,-0.28101,0.09002,66.456,0.29215,0.94377,-0.15478,99.286,-0.041464,0.17418,0.98384,184.62

> view matrix models
> #4,0.99332,-0.10665,0.044135,65.517,0.11272,0.97858,-0.17225,97.933,-0.024819,0.17607,0.98406,184.71

> view matrix models
> #4,0.9984,0.056183,0.0055947,64.504,-0.054255,0.9821,-0.18036,96.871,-0.015628,0.17977,0.98359,184.74

> view matrix models
> #4,0.98285,0.18086,-0.035908,63.503,-0.18438,0.96598,-0.18136,96.172,0.001884,0.18488,0.98276,184.81

> view matrix models
> #4,0.98896,-0.11263,0.096248,66.007,0.12756,0.97775,-0.16654,98.076,-0.075349,0.17698,0.98133,184.38

> view matrix models
> #4,0.39824,-0.46065,-0.79322,55.643,0.31818,0.88044,-0.35156,97.847,0.86033,-0.11238,0.4972,186.47

> view matrix models
> #4,-0.67029,0.070295,-0.73876,47.73,0.40063,0.87225,-0.2805,99.03,0.62466,-0.48399,-0.61282,176.19

> view matrix models
> #4,-0.83212,0.18163,-0.52401,48.348,0.38149,0.87326,-0.30312,98.701,0.40254,-0.45213,-0.79595,173.04

> view matrix models
> #4,-0.81516,0.21646,-0.53728,48.176,0.41878,0.86105,-0.28848,99.107,0.40018,-0.46016,-0.79253,173.09

> view matrix models
> #4,-0.82455,0.24778,-0.50865,48.261,0.43557,0.85177,-0.29116,99.218,0.36111,-0.46163,-0.81025,172.7

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.82455,0.24778,-0.50865,50.178,0.43557,0.85177,-0.29116,104.51,0.36111,-0.46163,-0.81025,174.98

> view matrix models
> #4,-0.82455,0.24778,-0.50865,49.665,0.43557,0.85177,-0.29116,102.17,0.36111,-0.46163,-0.81025,171.84

> view matrix models
> #4,-0.82455,0.24778,-0.50865,48.249,0.43557,0.85177,-0.29116,100.29,0.36111,-0.46163,-0.81025,167.02

> view matrix models
> #4,-0.82455,0.24778,-0.50865,46.55,0.43557,0.85177,-0.29116,100.35,0.36111,-0.46163,-0.81025,160.84

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.82455,0.24778,-0.50865,43.384,0.43557,0.85177,-0.29116,104.82,0.36111,-0.46163,-0.81025,169.54

> view matrix models
> #4,-0.82455,0.24778,-0.50865,43.591,0.43557,0.85177,-0.29116,105.3,0.36111,-0.46163,-0.81025,168.77

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.83312,0.3761,-0.40553,43.978,0.50346,0.81925,-0.27451,105.99,0.22899,-0.43287,-0.87189,167.3

> ui mousemode right "translate selected atoms"

> ui mousemode right "rotate selected models"

Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> view matrix models
> #4,-0.94759,0.31923,0.012853,50.055,0.28423,0.8607,-0.42238,102.94,-0.1459,-0.39659,-0.90633,165.47

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5999, correlation about mean = 0.03474, overlap = 363.1  
steps = 124, shift = 10.1, angle = 11.8 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.62731096 0.67433457 -0.38955596 128.23314889  
0.66471425 -0.20301056 0.71898655 135.95276667  
0.40575352 -0.70997154 -0.57559055 115.19315529  
Axis -0.87376708 -0.48630904 -0.00588255  
Axis point 0.00000000 66.18754882 42.61884660  
Rotation angle (degrees) 125.14481986  
Shift along axis -178.83859306  
  
Average map value = 0.07734 for 3543 atoms, 1608 outside contour  

> view matrix models
> #4,-0.92453,0.38105,-0.0071284,57.574,0.28182,0.67094,-0.68587,94.989,-0.25657,-0.63612,-0.72769,173.1

> view matrix models
> #4,-0.92885,0.36899,-0.033016,57.213,0.28657,0.65915,-0.69527,94.903,-0.23479,-0.65526,-0.71799,173.38

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.608, correlation about mean = 0.0316, overlap = 375.4  
steps = 160, shift = 3.1, angle = 11.1 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.67793482 0.40678763 -0.61231380 122.91965051  
0.64463710 0.07138782 0.76114832 136.23775027  
0.35333747 -0.91072916 -0.21383411 122.17429575  
Axis -0.85944035 -0.49639981 0.12226819  
Axis point 0.00000000 97.61424026 43.36110280  
Rotation angle (degrees) 103.42991266  
Shift along axis -158.33247073  
  
Average map value = 0.07913 for 3543 atoms, 1580 outside contour  

> view matrix models
> #4,-0.82947,0.53329,-0.16611,55.197,0.34273,0.25112,-0.90525,90.122,-0.44104,-0.8078,-0.39107,178.91

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6252, correlation about mean = 0.08255, overlap = 377.4  
steps = 140, shift = 5.65, angle = 11.1 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.77442587 0.00836819 -0.63260931 119.95063528  
0.59800867 0.31671698 0.73625809 135.39201846  
0.20651926 -0.94848317 0.24026957 132.45531589  
Axis -0.85417953 -0.42544601 0.29895322  
Axis point 0.00000000 154.39031623 28.99927093  
Rotation angle (degrees) 80.46173794  
Shift along axis -120.46342806  
  
Average map value = 0.08035 for 3543 atoms, 1597 outside contour  

> view matrix models
> #4,-0.64044,0.65132,-0.40696,50.671,0.43472,-0.1294,-0.89122,87.067,-0.63313,-0.74768,-0.20027,183.93

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6195, correlation about mean = 0.05943, overlap = 372.6  
steps = 112, shift = 1.68, angle = 5.3 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.76004882 -0.31216430 -0.56998179 120.52977483  
0.64803919 0.29834738 0.70073821 136.13005086  
-0.04869288 -0.90196579 0.42905327 134.38997755  
Axis -0.82626859 -0.26874872 0.49502964  
Axis point 0.00000000 179.50760782 12.18667529  
Rotation angle (degrees) 75.89351796  
Shift along axis -69.64772182  
  
Average map value = 0.07772 for 3543 atoms, 1639 outside contour  

> view matrix models
> #4,-0.79283,0.56674,-0.2241,53.148,0.38239,0.17628,-0.90703,83.992,-0.47455,-0.80482,-0.35648,181.83

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6252, correlation about mean = 0.08248, overlap = 377.4  
steps = 92, shift = 1.79, angle = 7.82 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.77422184 0.00860322 -0.63285584 119.94853354  
0.59818138 0.31674030 0.73610774 135.38899189  
0.20678385 -0.94847328 0.24008097 132.44193362  
Axis -0.85407143 -0.42569176 0.29891223  
Axis point 0.00000000 154.35374717 29.02610154  
Rotation angle (degrees) 80.47246578  
Shift along axis -120.49008048  
  
Average map value = 0.08036 for 3543 atoms, 1594 outside contour  

> view matrix models
> #4,-0.85534,0.50617,0.11038,58.204,0.25637,0.5987,-0.75883,86.079,-0.45018,-0.62076,-0.64186,177.49

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6174, correlation about mean = 0.04413, overlap = 377.2  
steps = 144, shift = 1.16, angle = 4.98 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.61680370 0.48013225 -0.62371965 117.51906280  
0.73315914 -0.06211477 0.67721446 136.58836850  
0.28641030 -0.87499416 -0.39032597 122.07032601  
Axis -0.85424133 -0.50088024 0.13925063  
Axis point 0.00000000 87.55385681 47.90261525  
Rotation angle (degrees) 114.69693773  
Shift along axis -151.80568528  
  
Average map value = 0.07994 for 3543 atoms, 1547 outside contour  

> view matrix models
> #4,-0.83041,0.46392,-0.30854,52.839,0.49808,0.36996,-0.78425,86.82,-0.24968,-0.80493,-0.53828,179.45

> view matrix models
> #4,-0.13679,0.026261,-0.99025,46.311,0.98233,-0.12531,-0.13902,99.651,-0.12774,-0.99177,-0.0086557,188.37

> view matrix models
> #4,-0.0858,-0.54265,-0.83557,50.664,0.97546,-0.21644,0.040397,102.61,-0.20277,-0.8116,0.5479,195.86

> view matrix models
> #4,-0.21582,-0.91161,-0.34985,58.728,0.92311,-0.30727,0.23119,105.6,-0.31825,-0.27306,0.90783,199.09

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6142, correlation about mean = 0.06728, overlap = 371.6  
steps = 136, shift = 5.12, angle = 5.11 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.96043850 0.23062480 0.15610920 127.59860215  
-0.11693305 0.84269957 -0.52553219 116.03021210  
-0.25275391 0.48648703 0.83632878 136.15470811  
Axis 0.88348114 0.35693280 -0.30341401  
Axis point 0.00000000 -274.14278555 226.20609132  
Rotation angle (degrees) 34.94188216  
Shift along axis 112.83470082  
  
Average map value = 0.07938 for 3543 atoms, 1604 outside contour  

> view matrix models
> #4,-0.91644,0.020454,-0.39964,51.05,-0.084386,-0.98611,0.14304,98.477,-0.39117,0.16481,0.90544,197.06

> view matrix models
> #4,-0.11916,0.70911,-0.69495,46.914,-0.97667,-0.20966,-0.046466,90.226,-0.17865,0.6732,0.71755,193.25

> view matrix models
> #4,0.035376,0.96512,0.2594,60.833,-0.99038,-0.00088133,0.13834,92.256,0.13375,-0.2618,0.95581,200.9

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6223, correlation about mean = 0.06382, overlap = 375  
steps = 88, shift = 2.2, angle = 15.7 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.81876534 -0.57405063 -0.00944356 120.33245963  
0.24010238 -0.32742301 -0.91386269 114.09647611  
0.52151141 -0.75050652 0.40591354 137.21262895  
Axis 0.16573978 -0.53870240 0.82603272  
Axis point 22.03015853 119.08534412 0.00000000  
Rotation angle (degrees) 150.47461150  
Shift along axis 71.82194979  
  
Average map value = 0.07956 for 3543 atoms, 1607 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.14965,0.96339,0.22244,60.192,-0.93523,-0.21093,0.28435,95.51,0.32086,-0.16548,0.93256,202.28

> view matrix models
> #4,-0.14965,0.96339,0.22244,57.948,-0.93523,-0.21093,0.28435,110.03,0.32086,-0.16548,0.93256,199.18

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06913, overlap = 394.9  
steps = 148, shift = 8.57, angle = 15.1 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93216687 -0.35935780 0.04389642 127.74993015  
0.13960902 -0.46869163 -0.87225998 111.60192145  
0.33402731 -0.80696352 0.48706840 136.31351167  
Axis 0.11241190 -0.49947832 0.85900231  
Axis point 42.04774727 105.73248501 0.00000000  
Rotation angle (degrees) 163.11606407  
Shift along axis 75.71149448  
  
Average map value = 0.0849 for 3543 atoms, 1504 outside contour  

> view matrix models
> #4,0.08841,0.989,0.11861,58.461,-0.95363,0.049646,0.29686,107.27,0.2877,-0.13936,0.94753,204.11

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06914, overlap = 394.9  
steps = 80, shift = 5.75, angle = 0.0356 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93231630 -0.35894313 0.04411512 127.75485318  
0.13910361 -0.46853048 -0.87242728 111.60013068  
0.33382106 -0.80724161 0.48674889 136.30956483  
Axis 0.11241763 -0.49961981 0.85891928  
Axis point 42.07192469 105.72834728 0.00000000  
Rotation angle (degrees) 163.14645059  
Shift along axis 75.68317508  
  
Average map value = 0.08491 for 3543 atoms, 1502 outside contour  

> volume #1 step 1

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06914, overlap = 394.9  
steps = 48, shift = 0.00884, angle = 0.0507 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93209792 -0.35953716 0.04389178 127.75077077  
0.13976555 -0.46881447 -0.87216889 111.59920955  
0.33415423 -0.80681225 0.48723190 136.31643911  
Axis 0.11244562 -0.49939443 0.85904667  
Axis point 42.03780544 105.72905814 0.00000000  
Rotation angle (degrees) 163.10525545  
Shift along axis 75.73517445  
  
Average map value = 0.0849 for 3543 atoms, 1548 outside contour  

> ui mousemode right "rotate selected models"

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.088203,0.98904,0.11845,60.8,-0.95366,0.049506,0.29678,103.34,0.28766,-0.13913,0.94757,200.92

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06916, overlap = 394.9  
steps = 88, shift = 2.67, angle = 0.0366 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93221811 -0.35929023 0.04335794 127.74014219  
0.14000398 -0.46852061 -0.87228855 111.60317283  
0.33371884 -0.80709291 0.48706546 136.30369883  
Axis 0.11216404 -0.49954337 0.85899688  
Axis point 42.05570335 105.74412560 0.00000000  
Rotation angle (degrees) 163.10454353  
Shift along axis 75.66167739  
  
Average map value = 0.0849 for 3543 atoms, 1551 outside contour  

> view matrix models
> #4,0.088432,0.98896,0.11886,57.717,-0.95377,0.049662,0.2964,104.16,0.28722,-0.13958,0.94764,206.53

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06914, overlap = 394.9  
steps = 108, shift = 4.93, angle = 0.0214 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93213132 -0.35948197 0.04363376 127.74327496  
0.13992110 -0.46868236 -0.87221495 111.60417408  
0.33399592 -0.80691360 0.48717262 136.31357697  
Axis 0.11232542 -0.49945445 0.85902750  
Axis point 42.04077203 105.73942514 0.00000000  
Rotation angle (degrees) 163.10136941  
Shift along axis 75.70472756  
  
Average map value = 0.0849 for 3543 atoms, 1551 outside contour  

> view matrix models
> #4,0.088244,0.98901,0.11863,59.052,-0.95372,0.049521,0.29659,99.112,0.28745,-0.13931,0.94761,200.95

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06913, overlap = 394.9  
steps = 104, shift = 3.1, angle = 0.0158 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93219362 -0.35931028 0.04371696 127.74342024  
0.13970708 -0.46858766 -0.87230013 111.60546681  
0.33391164 -0.80704505 0.48701262 136.31195029  
Axis 0.11232701 -0.49952738 0.85898489  
Axis point 42.04959238 105.74023051 0.00000000  
Rotation angle (degrees) 163.11394954  
Shift along axis 75.68895493  
  
Average map value = 0.0849 for 3543 atoms, 1551 outside contour  

> view matrix models
> #4,0.088449,0.98898,0.11875,58.693,-0.95367,0.049662,0.29673,104.12,0.28756,-0.13949,0.94755,204.9

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06916, overlap = 394.9  
steps = 100, shift = 3.4, angle = 0.00729 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93222138 -0.35925150 0.04360794 127.74575065  
0.13976346 -0.46855755 -0.87230728 111.59954447  
0.33381053 -0.80708870 0.48700959 136.30451433  
Axis 0.11226460 -0.49954292 0.85898401  
Axis point 42.05719538 105.73708502 0.00000000  
Rotation angle (degrees) 163.11401569  
Shift along axis 75.67596242  
  
Average map value = 0.0849 for 3543 atoms, 1551 outside contour  

> view matrix models
> #4,0.088502,0.98897,0.1188,59.767,-0.9537,0.049711,0.29664,104.9,0.28746,-0.13956,0.94757,203.68

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06911, overlap = 394.9  
steps = 76, shift = 3.37, angle = 0.0143 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93222443 -0.35927307 0.04336425 127.73907909  
0.13998592 -0.46851465 -0.87229465 111.60923341  
0.33370876 -0.80710400 0.48705398 136.30160902  
Axis 0.11216296 -0.49954869 0.85899393  
Axis point 42.05592760 105.74639324 0.00000000  
Rotation angle (degrees) 163.10571085  
Shift along axis 75.65560204  
  
Average map value = 0.0849 for 3543 atoms, 1552 outside contour  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.088452,0.98896,0.11887,59.068,-0.95377,0.049677,0.29641,102.14,0.28723,-0.13959,0.94764,201.99

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6273, correlation about mean = 0.06914, overlap = 394.9  
steps = 80, shift = 0.595, angle = 0.0181 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.93222386 -0.35923658 0.04367773 127.75020326  
0.13970829 -0.46860244 -0.87229200 111.60004529  
0.33382669 -0.80706928 0.48703071 136.30304825  
Axis 0.11228846 -0.49952500 0.85899132  
Axis point 42.05967602 105.73363882 0.00000000  
Rotation angle (degrees) 163.11660611  
Shift along axis 75.68099614  
  
Average map value = 0.0849 for 3543 atoms, 1553 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.28904,0.94549,0.14999,58.64,-0.90323,-0.32126,0.28456,103.02,0.31724,-0.053231,0.94685,202.26

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.633, correlation about mean = 0.07098, overlap = 391.7  
steps = 120, shift = 6.89, angle = 12.5 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.69565278 -0.68959162 0.20132211 126.42166267  
0.27735831 -0.51633712 -0.81022734 116.94310098  
0.66267606 -0.50779854 0.55045532 137.59923295  
Axis 0.27166546 -0.41442460 0.86859089  
Axis point 13.58099337 108.41211780 0.00000000  
Rotation angle (degrees) 146.17763842  
Shift along axis 105.39773984  
  
Average map value = 0.08244 for 3543 atoms, 1604 outside contour  

> view matrix models
> #4,0.4645,0.77824,0.4226,65.755,-0.86899,0.30863,0.38679,96.046,0.17059,-0.5469,0.81963,199.93

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6205, correlation about mean = 0.06228, overlap = 365.7  
steps = 92, shift = 5.51, angle = 4.01 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99468894 0.08836034 0.05278587 122.51377915  
-0.06530326 -0.14537290 -0.98721942 108.23184920  
-0.07955741 -0.98542334 0.15037103 127.12608801  
Axis 0.00885615 0.65255939 -0.75768583  
Axis point 66.16912866 104.74280851 0.00000000  
Rotation angle (degrees) 174.18001851  
Shift along axis -24.60892644  
  
Average map value = 0.07725 for 3543 atoms, 1678 outside contour  

> view matrix models
> #4,-0.4486,-0.41665,0.79067,76.184,-0.42909,-0.67565,-0.59949,89.925,0.78399,-0.6082,0.12431,191.6

> view matrix models
> #4,0.26336,-0.15386,-0.95235,51.535,0.063011,0.98783,-0.14217,92.848,0.96264,-0.022567,0.26985,192.42

> view matrix models
> #4,-0.20808,-0.46867,-0.85852,52.467,0.016406,0.87593,-0.48215,87.985,0.97797,-0.11441,-0.17458,186.13

> view matrix models
> #4,0.367,-0.77308,0.51735,75.884,-0.50278,-0.63278,-0.5889,89.706,0.78264,-0.043985,-0.62092,178.6

> view matrix models
> #4,0.60234,0.39649,0.69281,75.401,0.10072,-0.89873,0.42677,107.7,0.79186,-0.18728,-0.58127,179.69

> view matrix models
> #4,0.32825,0.91287,0.24274,66.091,0.34217,-0.35444,0.87022,113.31,0.88044,-0.2026,-0.4287,182.31

> view matrix models
> #4,0.12949,0.94889,-0.28782,57.403,0.43725,0.20588,0.87546,111.84,0.88997,-0.23921,-0.38824,183.06

> view matrix models
> #4,-0.31276,0.25937,-0.91373,48.905,0.16189,0.96247,0.21779,98.631,0.93593,-0.079814,-0.34301,183.36

> view matrix models
> #4,-0.1948,-0.82059,-0.53729,58.474,-0.263,0.57143,-0.77737,83.682,0.94493,-0.010125,-0.32713,183.4

> view matrix models
> #4,0.06238,-0.99089,-0.11933,66.108,-0.34609,0.090665,-0.93381,82.663,0.93613,0.099548,-0.33728,182.85

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.63, correlation about mean = 0.0667, overlap = 386.2  
steps = 192, shift = 8.15, angle = 22.8 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.57625719 0.53129678 -0.62100835 111.18458493  
-0.70095454 0.06940490 0.70982088 138.35591835  
0.42022657 0.84433801 0.33241982 127.42853044  
Axis 0.08309373 -0.64319014 -0.76118452  
Axis point 70.81294619 -26.82444315 0.00000000  
Rotation angle (degrees) 125.95971170  
Shift along axis -176.74704564  
  
Average map value = 0.08176 for 3543 atoms, 1579 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.33939,-0.86848,-0.36133,57.71,-0.30828,0.26021,-0.91501,81.211,0.88869,0.42194,-0.17942,183.22

> view matrix models
> #4,0.33939,-0.86848,-0.36133,57.804,-0.30828,0.26021,-0.91501,79.912,0.88869,0.42194,-0.17942,182.14

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6341, correlation about mean = 0.08868, overlap = 390.6  
steps = 84, shift = 3.36, angle = 5.72 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.52249565 0.61024765 -0.59547971 111.87666854  
-0.71531028 0.06636349 0.69564868 138.49284741  
0.46403608 0.78942617 0.40184178 131.58744922  
Axis 0.05517782 -0.62340944 -0.77994620  
Axis point 69.34555669 -26.84915304 0.00000000  
Rotation angle (degrees) 121.81276907  
Shift along axis -182.79576837  
  
Average map value = 0.08295 for 3543 atoms, 1554 outside contour  

> show sel surfaces

> view matrix models
> #4,0.29296,-0.86192,-0.41385,51.488,-0.26416,0.34303,-0.90141,88.288,0.91891,0.3734,-0.1272,180.03

> view matrix models
> #4,0.29296,-0.86192,-0.41385,48.809,-0.26416,0.34303,-0.90141,93.956,0.91891,0.3734,-0.1272,173.25

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5583, correlation about mean = 0.05998, overlap = 367.8  
steps = 72, shift = 2.07, angle = 8.47 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.42432254 0.62863580 -0.65174182 131.28282401  
-0.80824479 0.06158539 0.58561727 139.72513163  
0.40827776 0.77525755 0.48195954 128.45698840  
Axis 0.10561303 -0.59033812 -0.80021672  
Axis point 89.12560602 -35.70063158 0.00000000  
Rotation angle (degrees) 116.12869112  
Shift along axis -171.41332328  
  
Average map value = 0.07919 for 3543 atoms, 1665 outside contour  

> view matrix models
> #4,0.34166,-0.85715,-0.38543,59.488,-0.12683,0.36431,-0.9226,96.537,0.93122,0.36411,0.015754,181.24

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6369, correlation about mean = 0.08286, overlap = 396.2  
steps = 148, shift = 18, angle = 20.8 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.53863683 0.76332811 -0.35665188 114.41676576  
-0.61110456 -0.06253954 0.78907542 137.12424074  
0.58001860 0.64297667 0.50015939 131.38522142  
Axis -0.08750214 -0.56099504 -0.82318160  
Axis point 59.27744054 -8.04290796 0.00000000  
Rotation angle (degrees) 123.40190453  
Shift along axis -195.09162688  
  
Average map value = 0.08383 for 3543 atoms, 1567 outside contour  

> view matrix models
> #4,0.1597,-0.75255,-0.63887,55.77,-0.34654,0.56326,-0.7501,84.956,0.92434,0.34119,-0.17083,184.75

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6349, correlation about mean = 0.08212, overlap = 396.7  
steps = 80, shift = 3.34, angle = 5.39 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.56272562 0.78039169 -0.27263288 116.94261180  
-0.58502433 -0.14295467 0.79831728 136.61314281  
0.58402603 0.60873046 0.53699238 130.92101249  
Axis -0.11681171 -0.52782038 -0.84128513  
Axis point 59.49131241 -1.39610127 0.00000000  
Rotation angle (degrees) 125.75665679  
Shift along axis -195.90936847  
  
Average map value = 0.08293 for 3543 atoms, 1589 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.52454,0.30219,-0.79595,50.5,-0.54966,0.83415,-0.045534,92.078,0.65018,0.46138,0.60365,193.97

> view matrix models
> #4,0.25861,0.96026,0.105,59.867,-0.89275,0.19607,0.40566,99.745,0.36895,-0.19864,0.90797,200.25

> view matrix models
> #4,0.066754,0.82056,0.56765,66.713,-0.91716,-0.17356,0.35874,100.12,0.39289,-0.54457,0.741,198.89

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6279, correlation about mean = 0.08513, overlap = 401.9  
steps = 64, shift = 1.08, angle = 3.03 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.91802469 -0.39625568 -0.01456341 124.92492342  
0.01094544 0.01139014 -0.99987522 110.90591696  
0.39637212 -0.91806955 -0.00611924 129.33232769  
Axis 0.14001317 -0.70333001 0.69693845  
Axis point 61.96395682 0.00000000 132.43635661  
Rotation angle (degrees) 163.01414295  
Shift along axis 29.62434600  
  
Average map value = 0.08526 for 3543 atoms, 1546 outside contour  

> view matrix models
> #4,-0.57153,0.28847,0.76821,68.498,-0.51049,-0.85795,-0.057626,97.542,0.64246,-0.4251,0.6376,197.8

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.623, correlation about mean = 0.06978, overlap = 378.1  
steps = 72, shift = 3.47, angle = 3.19 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.36233568 -0.78299981 -0.50559286 119.09406999  
0.05429527 0.52380064 -0.85010876 108.52150018  
0.93046487 -0.33547604 -0.14727848 127.45255956  
Axis 0.29573801 -0.82524262 0.48115865  
Axis point 35.17425630 -0.00000000 136.68709500  
Rotation angle (degrees) 119.53181444  
Shift along axis 6.98897656  
  
Average map value = 0.08033 for 3543 atoms, 1617 outside contour  

> view matrix models
> #4,0.42435,-0.67917,0.59888,74.468,0.22034,-0.56405,-0.7958,87.027,0.87828,0.46965,-0.089706,188.36

> view matrix models
> #4,0.98546,-0.053618,-0.1612,62.965,-0.16802,-0.1676,-0.97143,81.315,0.02507,0.9844,-0.17417,181.67

> view matrix models
> #4,0.74768,0.36474,-0.55493,55.093,-0.54679,-0.13604,-0.82614,82.486,-0.37682,0.92112,0.097718,185.01

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6023, correlation about mean = 0.04653, overlap = 362.9  
steps = 92, shift = 3.39, angle = 8.08 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.66699714 -0.40831582 -0.62321184 115.67116554  
0.02728273 -0.84928251 0.52723321 135.57419424  
-0.74456058 0.33466013 0.57760898 128.51718507  
Axis -0.39182006 0.24690299 0.88629338  
Axis point 78.47343721 60.84381295 0.00000000  
Rotation angle (degrees) 165.77432779  
Shift along axis 102.05532192  
  
Average map value = 0.07501 for 3543 atoms, 1711 outside contour  

> view matrix models
> #4,0.31145,0.92865,0.20153,62.03,0.20495,0.14145,-0.9685,83.717,-0.9279,0.34294,-0.14627,178.11

> view matrix models
> #4,-0.47172,0.8713,0.13536,58.619,0.41832,0.35628,-0.83551,85.791,-0.7762,-0.33751,-0.53255,175.04

> view matrix models
> #4,-0.9797,-0.00216,-0.20047,54.682,0.11672,0.80687,-0.57908,86.298,0.16301,-0.59072,-0.79024,176.85

> view matrix models
> #4,-0.26037,-0.72593,-0.63658,51.284,-0.4907,0.66731,-0.56027,85.38,0.83152,0.1665,-0.52996,181.06

> view matrix models
> #4,0.39876,-0.46019,-0.79323,49.865,-0.62912,0.49207,-0.60173,84.968,0.66723,0.73898,-0.093301,185.21

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6232, correlation about mean = 0.06098, overlap = 375.4  
steps = 68, shift = 3.61, angle = 9.41 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.83407929 0.50434261 -0.22349555 116.89456566  
-0.43000913 -0.34063687 0.83609728 134.70137225  
0.34554866 0.79347656 0.50099009 131.65071068  
Axis -0.03892927 -0.51975831 -0.85342593  
Axis point 62.00079351 8.12214675 0.00000000  
Rotation angle (degrees) 146.81033208  
Shift along axis -186.91690718  
  
Average map value = 0.0795 for 3543 atoms, 1631 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.35373,-0.59324,-0.72315,52.075,-0.63279,0.41758,-0.65208,86.906,0.68881,0.68826,-0.22769,177.83

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6419, correlation about mean = 0.08137, overlap = 402.8  
steps = 96, shift = 4.85, angle = 15.1 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.69093325 0.58309004 -0.42733738 115.06658111  
-0.61975800 -0.17344293 0.76538720 136.69783579  
0.37217101 0.79367723 0.48121221 130.39839536  
Axis 0.01958335 -0.55344776 -0.83265363  
Axis point 68.29281455 -5.40523249 0.00000000  
Rotation angle (degrees) 133.75546775  
Shift along axis -181.97841940  
  
Average map value = 0.08517 for 3543 atoms, 1530 outside contour  

> view matrix models
> #4,0.37812,-0.72018,-0.58169,53.623,-0.43311,0.41771,-0.7987,88.289,0.81819,0.55394,-0.15397,176.79

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6419, correlation about mean = 0.08134, overlap = 402.8  
steps = 132, shift = 9.11, angle = 0.0115 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.69102227 0.58296695 -0.42736138 115.06164151  
-0.61976552 -0.17357862 0.76535034 136.69744729  
0.37199316 0.79373798 0.48124951 130.39744326  
Axis 0.01965336 -0.55341001 -0.83267707  
Axis point 68.29708750 -5.39655880 0.00000000  
Rotation angle (degrees) 133.76290116  
Shift along axis -181.96734903  
  
Average map value = 0.08516 for 3543 atoms, 1534 outside contour  

> ui mousemode right translate

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.43261,-0.55465,-0.71078,272.8,0.88413,-0.41534,-0.21401,62.802,-0.17652,-0.72101,0.67007,213.62,#4,0.37829,-0.7201,-0.58169,54.522,-0.43315,0.41765,-0.79872,79.849,0.81809,0.5541,-0.15392,182.13

> view matrix models
> #1,-0.43261,-0.55465,-0.71078,272.41,0.88413,-0.41534,-0.21401,62.128,-0.17652,-0.72101,0.67007,212.96,#4,0.37829,-0.7201,-0.58169,54.13,-0.43315,0.41765,-0.79872,79.175,0.81809,0.5541,-0.15392,181.47

> select subtract #4

5 models selected  

> view matrix models
> #1,-0.43261,-0.55465,-0.71078,274.08,0.88413,-0.41534,-0.21401,54.924,-0.17652,-0.72101,0.67007,219.63

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6043, correlation about mean = 0.04674, overlap = 377.4  
steps = 92, shift = 4.27, angle = 8.11 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.65248285 0.53861104 -0.53307060 121.07732590  
-0.65957647 -0.05728005 0.74945171 135.57240515  
0.37312865 0.84060522 0.39262942 121.33577205  
Axis 0.06056532 -0.60210789 -0.79611427  
Axis point 74.46539734 -15.54876958 0.00000000  
Rotation angle (degrees) 131.19065565  
Shift along axis -170.89326731  
  
Average map value = 0.07915 for 3543 atoms, 1606 outside contour  

> view matrix models
> #1,-0.43261,-0.55465,-0.71078,274.18,0.88413,-0.41534,-0.21401,54.007,-0.17652,-0.72101,0.67007,220.24

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6043, correlation about mean = 0.04672, overlap = 377.4  
steps = 72, shift = 1.11, angle = 0.0237 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.65262798 0.53861257 -0.53289137 121.07368372  
-0.65955428 -0.05769205 0.74943964 135.58537131  
0.37291401 0.84057606 0.39289567 121.34084800  
Axis 0.06056422 -0.60194802 -0.79623524  
Axis point 74.46976104 -15.50874417 0.00000000  
Rotation angle (degrees) 131.20173043  
Shift along axis -170.89847218  
  
Average map value = 0.07914 for 3543 atoms, 1609 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.41044,-0.25417,0.87575,-19.653,0.071616,-0.94842,-0.30883,216.83,0.90907,0.18947,-0.37106,100.7

> view matrix models
> #1,0.94437,0.28794,-0.1589,-35.19,0.32502,-0.89089,0.31729,116.79,-0.050208,-0.35129,-0.93492,329.58

> view matrix models
> #1,-0.39008,-0.49298,-0.77769,269.36,0.91901,-0.26086,-0.2956,41.522,-0.057139,-0.83001,0.55481,229.83

> view matrix models
> #1,-0.82105,0.2466,-0.51485,212.89,0.37394,-0.44912,-0.81146,178.67,-0.43133,-0.85877,0.27654,305.34

> view matrix models
> #1,-0.83084,0.24921,-0.49759,211.99,0.33937,-0.48174,-0.80793,185.9,-0.44106,-0.84013,0.31567,300.45

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.83084,0.24921,-0.49759,221.18,0.33937,-0.48174,-0.80793,203.84,-0.44106,-0.84013,0.31567,315.15

> view matrix models
> #1,-0.83084,0.24921,-0.49759,222.55,0.33937,-0.48174,-0.80793,201.67,-0.44106,-0.84013,0.31567,319.2

> view matrix models
> #1,-0.83084,0.24921,-0.49759,220.99,0.33937,-0.48174,-0.80793,202.51,-0.44106,-0.84013,0.31567,315.2

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.8276,0.22093,-0.51602,225.56,0.36182,-0.49285,-0.79131,199.38,-0.42915,-0.8416,0.32794,312.71

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6037, correlation about mean = 0.0518, overlap = 363.7  
steps = 184, shift = 18.9, angle = 10.8 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.71155707 0.69812703 0.07940514 130.21534644  
-0.57415932 -0.64287176 0.50700785 132.10846001  
0.40500321 0.31517382 0.85827609 131.51873932  
Axis -0.14453766 -0.24532238 -0.95860617  
Axis point 72.73840273 28.51602827 0.00000000  
Rotation angle (degrees) 138.42402119  
Shift along axis -177.30485847  
  
Average map value = 0.07697 for 3543 atoms, 1648 outside contour  

> view matrix models
> #1,-0.79616,0.15965,-0.58364,235.43,0.45374,-0.4806,-0.75043,183.08,-0.40031,-0.86228,0.3102,313.38

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.79616,0.15965,-0.58364,235.77,0.45374,-0.4806,-0.75043,182.18,-0.40031,-0.86228,0.3102,313.53

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.791,-0.59982,-0.12058,270.08,-0.39242,0.6486,-0.65217,149.05,0.46939,-0.46855,-0.74842,277.12

> view matrix models
> #1,-0.44455,-0.6994,-0.55966,285.15,-0.83661,0.54744,-0.01959,147.41,0.32008,0.45951,-0.82849,202.26

> view matrix models
> #1,-0.78809,-0.088385,-0.60918,264.31,-0.089547,0.99557,-0.028599,12.098,0.60901,0.032012,-0.79252,211

> view matrix models
> #1,-0.3182,-0.9313,0.17729,220.04,-0.94483,0.32687,0.021268,179.83,-0.077756,-0.16074,-0.98393,332.07

> view matrix models
> #1,-0.68791,0.3203,-0.6513,212.58,-0.31219,0.67952,0.66392,1.6146,0.65522,0.66004,-0.36746,94.025

> view matrix models
> #1,-0.57186,-0.46821,-0.67361,286.69,-0.68429,0.72515,0.076892,100.4,0.45247,0.50492,-0.73507,172.25

> view matrix models
> #1,0.76485,-0.29692,-0.5717,100.84,-0.42049,-0.90243,-0.093861,263.3,-0.48805,0.31218,-0.81508,311.69

> view matrix models
> #1,0.64053,-0.70366,-0.30755,132.48,-0.76695,-0.60644,-0.2098,283.75,-0.038883,0.37026,-0.92811,264.25

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.64053,-0.70366,-0.30755,122.92,-0.76695,-0.60644,-0.2098,297.88,-0.038883,0.37026,-0.92811,264.19

> view matrix models
> #1,0.64053,-0.70366,-0.30755,115.62,-0.76695,-0.60644,-0.2098,311.77,-0.038883,0.37026,-0.92811,265.54

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5527, correlation about mean = 0.05351, overlap = 357.4  
steps = 108, shift = 3.94, angle = 12.6 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.37719090 -0.69831311 0.60834679 158.07359344  
0.32484078 0.71488949 0.61920228 135.74242969  
-0.86729780 -0.03594162 0.49649039 130.86496262  
Axis -0.34274974 0.77200871 0.53528046  
Axis point 167.30008242 0.00000000 -156.54750735  
Rotation angle (degrees) 72.88530836  
Shift along axis 120.66411199  
  
Average map value = 0.0775 for 3543 atoms, 1680 outside contour  

> view matrix models
> #1,0.64053,-0.70366,-0.30755,114.48,-0.76695,-0.60644,-0.2098,317.02,-0.038883,0.37026,-0.92811,258.02

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5652, correlation about mean = 0.06046, overlap = 366.5  
steps = 116, shift = 6.25, angle = 19.2 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.31326053 -0.61636538 0.72246907 158.30032514  
0.00863927 0.76257836 0.64683815 137.13745245  
-0.94962793 -0.19638726 0.24421065 120.65666438  
Axis -0.42711696 0.84696332 0.31658212  
Axis point 178.38522002 0.00000000 -100.82411565  
Rotation angle (degrees) 80.79166597  
Shift along axis 86.73538010  
  
Average map value = 0.07914 for 3543 atoms, 1656 outside contour  

> view matrix models
> #1,0.64053,-0.70366,-0.30755,112.76,-0.76695,-0.60644,-0.2098,320.51,-0.038883,0.37026,-0.92811,253.63

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6063, correlation about mean = 0.05911, overlap = 386.4  
steps = 252, shift = 12.5, angle = 31.9 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.16327326 -0.79549187 0.58355335 147.36076278  
-0.12937519 0.60364664 0.78668468 137.04210534  
-0.97806129 0.05294725 -0.20147627 112.89119672  
Axis -0.39671787 0.84433533 0.36015662  
Axis point 136.66888257 0.00000000 -46.64372531  
Rotation angle (degrees) 112.36784502  
Shift along axis 97.90735431  
  
Average map value = 0.08138 for 3543 atoms, 1612 outside contour  

> view matrix models
> #1,0.64053,-0.70366,-0.30755,110.13,-0.76695,-0.60644,-0.2098,322.8,-0.038883,0.37026,-0.92811,251.7

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6063, correlation about mean = 0.05907, overlap = 386.4  
steps = 124, shift = 3.98, angle = 0.0302 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.16313596 -0.79522585 0.58395419 147.36396149  
-0.12946046 0.60401966 0.78638428 137.03963432  
-0.97807292 0.05268858 -0.20148763 112.89008744  
Axis -0.39665129 0.84446462 0.35992674  
Axis point 136.67263669 0.00000000 -46.62920230  
Rotation angle (degrees) 112.35238838  
Shift along axis 97.90517917  
  
Average map value = 0.08138 for 3543 atoms, 1606 outside contour  

> select add #2.2

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 4 models selected  

> select subtract #2.2

3 models selected  

> vop zflip #1

> volume zflip #1

Expected a density maps specifier or a keyword  

> hide #!1 models

> show #!1 models

> volume flip #1 axis z

Opened cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip as #6, grid size
300,300,300, pixel 0.839, shown at step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6063, correlation about mean = 0.05907, overlap = 386.4  
steps = 100, shift = 0.0145, angle = 0.065 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.16324263 -0.79580171 0.58313932 147.35653866  
-0.12910144 0.60321608 0.78705983 137.04088154  
-0.97810258 0.05319759 -0.20120973 112.89830149  
Axis -0.39679712 0.84415885 0.36048285  
Axis point 136.67323319 0.00000000 -46.68424204  
Rotation angle (degrees) 112.37197713  
Shift along axis 97.91152346  
  
Average map value = 0.08137 for 3543 atoms, 1611 outside contour  

> undo

> ui mousemode right zoom

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6063, correlation about mean = 0.05912, overlap = 386.4  
steps = 104, shift = 0.0108, angle = 0.0373 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.16329118 -0.79549083 0.58354977 147.36066444  
-0.12940430 0.60364832 0.78667861 137.04258373  
-0.97805445 0.05294383 -0.20151038 112.89063373  
Axis -0.39672088 0.84433915 0.36014435  
Axis point 136.66840396 0.00000000 -46.64038321  
Rotation angle (degrees) 112.36940436  
Shift along axis 97.90628961  
  
Average map value = 0.08138 for 3543 atoms, 1612 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.64053,-0.70366,-0.30755,112.18,-0.76695,-0.60644,-0.2098,324.87,-0.038883,0.37026,-0.92811,252.91

> view matrix models
> #1,0.64053,-0.70366,-0.30755,112.87,-0.76695,-0.60644,-0.2098,325.81,-0.038883,0.37026,-0.92811,253.72

> select add #6

4 models selected  

> view matrix models
> #1,0.64053,-0.70366,-0.30755,115.64,-0.76695,-0.60644,-0.2098,327.55,-0.038883,0.37026,-0.92811,253.65,#6,0.64053,-0.70366,-0.30755,112.9,-0.76695,-0.60644,-0.2098,324.54,-0.038883,0.37026,-0.92811,251.63

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.6076, correlation about mean = 0.05369, overlap = 378.6  
steps = 144, shift = 7.79, angle = 8.68 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.22984502 -0.85116201 0.47190517 141.93670262  
-0.20359875 0.51621053 0.83190999 138.17140324  
-0.95169260 0.09513107 -0.29194394 112.02570523  
Axis -0.42617493 0.82345146 0.37456992  
Axis point 133.38912643 0.00000000 -39.16359168  
Rotation angle (degrees) 120.18470563  
Shift along axis 95.24903917  
  
Average map value = 0.08053 for 3543 atoms, 1660 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.8206,-0.56166,-0.10563,47.824,-0.51958,-0.65621,-0.5472,355.19,0.23802,0.50392,-0.83031,191.16,#6,0.8206,-0.56166,-0.10563,46.305,-0.51958,-0.65621,-0.5472,351.05,0.23802,0.50392,-0.83031,190.04

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5785, correlation about mean = 0.04659, overlap = 381  
steps = 164, shift = 8.24, angle = 12.6 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.26053827 -0.94465403 0.19937043 144.17695528  
-0.06928341 0.18767618 0.97978439 144.34227006  
-0.96297436 -0.26908440 -0.01655203 120.70101907  
Axis -0.65128406 0.60616186 0.45650506  
Axis point 0.00000000 195.70737964 45.06369174  
Rotation angle (degrees) 106.50916958  
Shift along axis 48.69525342  
  
Average map value = 0.07964 for 3543 atoms, 1637 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.8206,-0.56166,-0.10563,41.908,-0.51958,-0.65621,-0.5472,362.34,0.23802,0.50392,-0.83031,191.88,#6,0.8206,-0.56166,-0.10563,40.389,-0.51958,-0.65621,-0.5472,358.2,0.23802,0.50392,-0.83031,190.76

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5785, correlation about mean = 0.04659, overlap = 381  
steps = 132, shift = 9.31, angle = 0.00566 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.26054529 -0.94463371 0.19945753 144.17884293  
-0.06926669 0.18777106 0.97976739 144.34156099  
-0.96297366 -0.26908955 -0.01650878 120.69945316  
Axis -0.65126327 0.60619332 0.45649295  
Axis point -0.00000000 195.71825702 45.05911570  
Rotation angle (degrees) 106.50483256  
Shift along axis 48.69895474  
  
Average map value = 0.07963 for 3543 atoms, 1638 outside contour  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 7 models selected  

> select subtract #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.52378,-0.56052,-0.64146,148.88,-0.72875,-0.68478,0.0033162,326.57,-0.44112,0.46573,-0.76715,282.43,#4,0.793,-0.42742,-0.43412,66.073,-0.14563,0.55893,-0.81633,123.06,0.59155,0.71057,0.38098,193.46

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.52378,-0.56052,-0.64146,157.9,-0.72875,-0.68478,0.0033162,326.05,-0.44112,0.46573,-0.76715,277.37,#4,0.793,-0.42742,-0.43412,75.087,-0.14563,0.55893,-0.81633,122.54,0.59155,0.71057,0.38098,188.4

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5785, correlation about mean = 0.0466, overlap = 381  
steps = 48, shift = 0.0113, angle = 0.00814 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.26049480 -0.94463924 0.19949727 144.17886741  
-0.06915552 0.18784424 0.97976122 144.34438538  
-0.96299531 -0.26901904 -0.01639457 120.68998048  
Axis -0.65120951 0.60621251 0.45654415  
Axis point 0.00000000 195.72566373 45.05769994  
Rotation angle (degrees) 106.50074222  
Shift along axis 48.71302750  
  
Average map value = 0.07962 for 3543 atoms, 1636 outside contour  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 10 models selected  

> select subtract #4

7 models selected  

> view matrix models
> #1,0.52378,-0.56052,-0.64146,161.49,-0.72875,-0.68478,0.0033162,327.16,-0.44112,0.46573,-0.76715,274.85,#6,0.8206,-0.56166,-0.10563,43.979,-0.51958,-0.65621,-0.5472,359.31,0.23802,0.50392,-0.83031,188.24

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.46747,-0.56324,-0.68135,175.91,-0.72652,0.19432,-0.65909,327.1,0.50363,0.80312,-0.31837,33.128,#6,0.80932,-0.56108,-0.17377,55.361,-0.041361,0.24066,-0.96973,268.22,0.58592,0.792,0.17157,-32.79

> select add #2.3

1181 atoms, 1149 bonds, 2 pseudobonds, 200 residues, 6 models selected  

> select subtract #2.3

5 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 7 models selected  

> select subtract #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> view matrix models
> #1,0.57379,-0.50774,-0.64262,144.62,-0.5774,0.30567,-0.75708,300.83,0.58083,0.80546,-0.11778,-9.5657,#4,0.85079,-0.41457,-0.32294,76.744,0.031834,0.65406,-0.75577,123.74,0.52454,0.63272,0.56967,190.83

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.57379,-0.50774,-0.64262,143.63,-0.5774,0.30567,-0.75708,325.49,0.58083,0.80546,-0.11778,-18.397,#4,0.85079,-0.41457,-0.32294,75.754,0.031834,0.65406,-0.75577,148.4,0.52454,0.63272,0.56967,182

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.573, correlation about mean = 0.09548, overlap = 373.3  
steps = 180, shift = 23.7, angle = 18.3 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83420851 -0.14970999 0.53073824 163.53286388  
-0.21290860 0.80037682 0.56041669 138.15832730  
-0.50869056 -0.58050311 0.63580661 137.01270142  
Axis -0.73860188 0.67289924 -0.04091314  
Axis point 0.00000000 337.98225100 -166.27033092  
Rotation angle (degrees) 50.56547919  
Shift along axis -33.42466726  
  
Average map value = 0.08111 for 3543 atoms, 1656 outside contour  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 10 models selected  

> view matrix models
> #1,0.57379,-0.50774,-0.64262,142.64,-0.5774,0.30567,-0.75708,312.43,0.58083,0.80546,-0.11778,-12.842,#4,0.91366,-0.11925,-0.38859,78.282,-0.16163,0.77058,-0.6165,156.51,0.37296,0.62608,0.68478,177.29,#6,0.80932,-0.56108,-0.17377,54.374,-0.041361,0.24066,-0.96973,255.17,0.58592,0.792,0.17157,-27.235

> select subtract #4

7 models selected  

> view matrix models
> #1,0.57379,-0.50774,-0.64262,143.33,-0.5774,0.30567,-0.75708,312.19,0.58083,0.80546,-0.11778,-13.148,#6,0.80932,-0.56108,-0.17377,55.057,-0.041361,0.24066,-0.96973,254.93,0.58592,0.792,0.17157,-27.542

> view matrix models
> #1,0.57379,-0.50774,-0.64262,146.58,-0.5774,0.30567,-0.75708,313.62,0.58083,0.80546,-0.11778,-15.589,#6,0.80932,-0.56108,-0.17377,58.308,-0.041361,0.24066,-0.96973,256.36,0.58592,0.792,0.17157,-29.982

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 7 models selected  

> select subtract #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> view matrix models
> #1,0.57379,-0.50774,-0.64262,148.34,-0.5774,0.30567,-0.75708,300.34,0.58083,0.80546,-0.11778,5.245,#4,0.91366,-0.11925,-0.38859,80.042,-0.16163,0.77058,-0.6165,143.23,0.37296,0.62608,0.68478,198.12

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.573, correlation about mean = 0.09553, overlap = 373.3  
steps = 72, shift = 4.95, angle = 0.0414 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83406301 -0.15032939 0.53079182 163.54326916  
-0.21237342 0.80050826 0.56043202 138.15694787  
-0.50915264 -0.58016169 0.63574837 137.00002774  
Axis -0.73836236 0.67320715 -0.04016415  
Axis point 0.00000000 338.12371798 -166.09890673  
Rotation angle (degrees) 50.56816058  
Shift along axis -33.24843799  
  
Average map value = 0.0811 for 3543 atoms, 1661 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.040932,-0.29411,0.9549,-1.9951,0.64875,-0.71902,-0.24927,185.45,0.7599,0.62969,0.16137,-33.809,#4,-0.38959,-0.79558,0.46397,94.887,0.82071,-0.52849,-0.21708,158.06,0.41791,0.29621,0.85884,199.57

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.573, correlation about mean = 0.09548, overlap = 373.3  
steps = 44, shift = 0.00951, angle = 0.0104 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83415796 -0.15032112 0.53064495 163.54365883  
-0.21227006 0.80052053 0.56045366 138.15907661  
-0.50904019 -0.58014692 0.63585189 136.99293675  
Axis -0.73844965 0.67311480 -0.04010710  
Axis point 0.00000000 338.10881363 -166.12488369  
Rotation angle (degrees) 50.56034398  
Shift along axis -33.26622760  
  
Average map value = 0.08108 for 3543 atoms, 1667 outside contour  

> ui mousemode right "move picked models"

> view matrix models
> #4,-0.38951,-0.79557,0.46406,90.125,0.82067,-0.5285,-0.21722,165.24,0.41807,0.29623,0.85876,195.44

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5644, correlation about mean = 0.05561, overlap = 352.3  
steps = 488, shift = 8.04, angle = 34.1 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39149153 -0.38386971 0.83628848 160.70337203  
-0.24403022 0.83297673 0.49658737 130.96755801  
-0.88723370 -0.39848941 0.23242753 119.99926981  
Axis -0.45969448 0.88516836 0.07181891  
Axis point 197.29550905 0.00000000 -76.45814809  
Rotation angle (degrees) 76.79429008  
Shift along axis 50.67210217  
  
Average map value = 0.07592 for 3543 atoms, 1709 outside contour  

> view matrix models
> #4,-0.75942,-0.64121,0.11012,76.615,0.6506,-0.74863,0.12755,165.26,0.00065796,0.16851,0.9857,198.38

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.04739, overlap = 347.4  
steps = 144, shift = 10.7, angle = 26 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13180167 -0.58728036 0.79858005 157.88666229  
-0.49611769 0.65837122 0.56605174 130.59096981  
-0.85819319 -0.47079625 -0.20458575 111.39626896  
Axis -0.52992483 0.84676373 0.04659252  
Axis point 172.39604207 0.00000000 -31.58641661  
Rotation angle (degrees) 101.95869213  
Shift along axis 32.10186733  
  
Average map value = 0.07472 for 3543 atoms, 1742 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.49556,0.045401,0.86738,43.387,-0.2195,-0.97277,-0.074489,321.79,0.84038,-0.2273,0.49203,25.69,#4,-0.83222,-0.087435,-0.5475,67.696,0.5176,-0.47647,-0.71068,151.8,-0.19873,-0.87483,0.44178,183.5

> view matrix models
> #1,-0.72881,0.20688,0.65271,81.691,-0.44645,-0.86634,-0.22391,358.52,0.51915,-0.45459,0.72376,73.435,#4,-0.75885,0.25692,-0.59845,66.348,0.56312,-0.20277,-0.80111,149.95,-0.32717,-0.94492,0.0091943,176.66

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.0474, overlap = 347.4  
steps = 44, shift = 0.0173, angle = 0.0285 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13216783 -0.58745510 0.79839099 157.89324892  
-0.49625090 0.65803173 0.56632966 130.58135666  
-0.85805985 -0.47105281 -0.20455450 111.39204791  
Axis -0.53019467 0.84659364 0.04661345  
Axis point 172.43682056 0.00000000 -31.59838686  
Rotation angle (degrees) 101.95699598  
Shift along axis 32.02755515  
  
Average map value = 0.0747 for 3543 atoms, 1746 outside contour  

> volume #1 step 4

> hide #!6 models

> show #!6 models

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 10 models selected  

> view matrix models
> #1,-0.59103,-0.46559,0.65872,165.49,-0.23875,-0.67906,-0.69418,342.92,0.77051,-0.56755,0.29019,94.692,#4,-0.41229,-0.26946,-0.87029,84.751,0.90107,0.020404,-0.43319,139.23,0.13448,-0.9628,0.23439,174.56,#6,0.8207,-0.0015957,-0.57136,55.063,-0.56087,0.18846,-0.80617,298.72,0.10897,0.98208,0.15378,7.9188

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.04745, overlap = 347.3  
steps = 48, shift = 0.00462, angle = 0.00786 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13207204 -0.58739250 0.79845289 157.89396756  
-0.49622980 0.65812500 0.56623976 130.58077180  
-0.85808680 -0.47100057 -0.20456175 111.38719173  
Axis -0.53012258 0.84663995 0.04659229  
Axis point 172.42374430 0.00000000 -31.59674876  
Rotation angle (degrees) 101.95728192  
Shift along axis 32.04152496  
  
Average map value = 0.0747 for 3543 atoms, 1635 outside contour  

> select subtract #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> view matrix models
> #1,-0.91004,-0.39631,-0.1215,292.76,0.16515,-0.077809,-0.98319,242.67,0.38019,-0.91481,0.13626,212.12,#4,0.18073,0.33096,-0.92618,83.79,0.90409,0.31487,0.28893,149.07,0.38725,-0.88956,-0.24231,167.87

> view matrix models
> #1,-0.77809,0.059881,-0.62529,274.31,0.60674,0.32933,-0.72347,97.5,0.16261,-0.94231,-0.29258,296.52,#4,0.40407,0.79097,-0.45945,89.628,0.53751,0.2011,0.81893,155.72,0.74014,-0.57787,-0.34389,166.56

> view matrix models
> #1,-0.35858,0.88301,-0.30285,72.455,0.93348,0.33747,-0.12133,-20.752,-0.0049365,-0.32621,-0.94528,318.95,#4,-0.22566,0.9344,0.27563,97.407,0.05994,-0.26908,0.96125,157.19,0.97236,0.23344,0.0047134,170.28

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.04739, overlap = 347.3  
steps = 44, shift = 0.00449, angle = 0.0202 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13239576 -0.58747205 0.79834074 157.89366888  
-0.49621529 0.65795047 0.56645526 130.58093214  
-0.85804530 -0.47114516 -0.20440277 111.39272445  
Axis -0.53028894 0.84653320 0.04663881  
Axis point 172.45943754 0.00000000 -31.61571698  
Rotation angle (degrees) 101.94825786  
Shift along axis 32.00705223  
  
Average map value = 0.07469 for 3543 atoms, 1635 outside contour  

> view matrix models
> #1,-0.68609,0.71721,0.122,91.023,0.61712,0.66255,-0.42449,18.451,-0.38528,-0.21595,-0.89717,353.78,#4,-0.55141,0.81747,-0.1664,89.939,0.11717,0.27338,0.95474,155.12,0.82596,0.50696,-0.24653,164.81

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.0474, overlap = 347.3  
steps = 64, shift = 0.00205, angle = 0.00612 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13249641 -0.58744676 0.79834266 157.89354026  
-0.49618944 0.65794339 0.56648612 130.58045819  
-0.85804471 -0.47118658 -0.20430974 111.39260686  
Axis -0.53031518 0.84651680 0.04663815  
Axis point 172.46829253 0.00000000 -31.62420459  
Rotation angle (degrees) 101.94279396  
Shift along axis 32.00035571  
  
Average map value = 0.07468 for 3543 atoms, 1635 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.04741, overlap = 347.3  
steps = 64, shift = 0.000479, angle = 0.00174 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13248302 -0.58742890 0.79835802 157.89338588  
-0.49618140 0.65796570 0.56646726 130.58029599  
-0.85805144 -0.47117769 -0.20430201 111.39233786  
Axis -0.53030005 0.84652656 0.04663306  
Axis point 172.46625781 0.00000000 -31.62412575  
Rotation angle (degrees) 101.94230654  
Shift along axis 32.00338467  
  
Average map value = 0.07468 for 3543 atoms, 1635 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.68609,0.71721,0.122,87.344,0.61712,0.66255,-0.42449,19.409,-0.38528,-0.21595,-0.89717,360.67,#4,-0.55145,0.81745,-0.16639,86.258,0.11725,0.27343,0.95472,156.08,0.82593,0.50697,-0.24663,171.7

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.32696,0.015655,0.94491,-63.236,-0.67135,0.70755,0.22058,123.34,-0.66512,-0.70649,0.24185,331.13,#4,-0.77523,-0.62699,0.076851,95.689,-0.62929,0.75598,-0.18024,134.3,0.054911,-0.18809,-0.98062,160.8

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.04743, overlap = 347.3  
steps = 64, shift = 0.00228, angle = 0.00843 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13238796 -0.58735160 0.79843066 157.89259492  
-0.49616825 0.65806479 0.56636365 130.58023016  
-0.85807371 -0.47113567 -0.20430536 111.39156590  
Axis -0.53022559 0.84657501 0.04660026  
Axis point 172.45456984 0.00000000 -31.61924035  
Rotation angle (degrees) 101.94228654  
Shift along axis 32.01814219  
  
Average map value = 0.07469 for 3543 atoms, 1635 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc using 13679 points  
correlation = 0.5663, correlation about mean = 0.0474, overlap = 347.4  
steps = 60, shift = 0.00418, angle = 0.0111 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.13225262 -0.58745973 0.79837354 157.89338965  
-0.49622104 0.65801181 0.56637896 130.58139822  
-0.85806405 -0.47107485 -0.20448609 111.39219544  
Axis -0.53022349 0.84657466 0.04663041  
Axis point 172.44481153 0.00000000 -31.60660406  
Rotation angle (degrees) 101.95309291  
Shift along axis 32.02238284  
  
Average map value = 0.07469 for 3543 atoms, 1635 outside contour  

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.5805, correlation about mean = 0.06949, overlap = 369.8  
steps = 144, shift = 6.02, angle = 4.82 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
-0.33594088 -0.93799198 0.08552642 139.52600939  
-0.02478533 -0.08196856 -0.99632667 117.44412653  
0.94155691 -0.33682666 0.00428815 138.70658875  
Axis 0.46614179 -0.60505167 0.64546441  
Axis point -34.25066511 156.03086051 0.00000000  
Rotation angle (degrees) 134.97600959  
Shift along axis 83.50930538  
  
Average map value = 0.07977 for 3543 atoms, 1692 outside contour  

> view matrix models
> #1,0.36987,0.88672,0.27734,-104.28,-0.77755,0.45882,-0.42999,240.48,-0.50853,-0.056601,0.85918,160.53,#4,-0.64372,0.30415,0.70223,97.862,0.10654,0.94431,-0.31134,130.62,-0.75781,-0.1256,-0.64027,162.65

> view matrix models
> #1,0.14206,-0.44128,-0.88605,221.32,-0.43419,-0.8322,0.34485,266.78,-0.88955,0.33572,-0.30982,294.87,#4,0.99622,-0.011939,0.086052,93.981,0.068773,-0.49685,-0.86511,126.83,0.053084,0.86775,-0.49415,163.97

> view matrix models
> #1,0.37005,-0.71149,-0.59737,189.92,-0.41342,-0.70195,0.57995,221.25,-0.83195,0.032357,-0.5539,351.76,#4,0.88762,-0.45502,0.071308,94.427,-0.1981,-0.51695,-0.83278,126.08,0.41579,0.72507,-0.54899,165.33

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.591, correlation about mean = 0.04427, overlap = 359.1  
steps = 136, shift = 4.21, angle = 21.2 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.93819205 0.24148613 0.24795186 139.40094587  
0.12060867 0.44338610 -0.88817921 115.63926959  
-0.32442137 0.86318782 0.38685600 138.71357610  
Axis 0.94848671 0.30997980 -0.06546353  
Axis point 0.00000000 -82.81961013 126.61368650  
Rotation angle (degrees) 67.40485615  
Shift along axis 158.98510352  
  
Average map value = 0.07697 for 3543 atoms, 1715 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.37005,-0.71149,-0.59737,199.71,-0.41342,-0.70195,0.57995,223.8,-0.83195,0.032357,-0.5539,348.38,#4,0.95514,-0.29571,-0.016122,99.812,-0.24194,-0.74775,-0.61833,133.05,0.17079,0.59449,-0.78575,154.63

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6059, correlation about mean = 0.06652, overlap = 391.9  
steps = 92, shift = 6.16, angle = 14.5 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.95757458 0.28417370 0.04791892 137.75730586  
-0.02839736 0.25851313 -0.96559026 112.47995897  
-0.28678303 0.92326392 0.25561539 132.33680481  
Axis 0.97184368 0.17220915 -0.16082248  
Axis point 0.00000000 -56.43735165 136.29153206  
Rotation angle (degrees) 76.35817601  
Shift along axis 131.96591250  
  
Average map value = 0.08465 for 3543 atoms, 1556 outside contour  

> view matrix models
> #1,0.37005,-0.71149,-0.59737,207.12,-0.41342,-0.70195,0.57995,223.49,-0.83195,0.032357,-0.5539,347.11,#4,0.94978,-0.29471,-0.10518,99.743,-0.31124,-0.85497,-0.41492,135.65,0.032354,0.42682,-0.90376,152.47

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6059, correlation about mean = 0.0665, overlap = 391.9  
steps = 100, shift = 7.53, angle = 0.00359 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.95756087 0.28422332 0.04789857 137.75596536  
-0.02843726 0.25853090 -0.96558432 112.47939329  
-0.28682485 0.92324367 0.25564160 132.33702812  
Axis 0.97183388 0.17222085 -0.16086914  
Axis point 0.00000000 -56.44446144 136.29597010  
Rotation angle (degrees) 76.35728348  
Shift along axis 131.95826674  
  
Average map value = 0.08464 for 3543 atoms, 1555 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.55701,-0.65707,-0.50794,162.9,0.058472,-0.57906,0.81318,113.11,-0.82845,-0.48265,-0.28412,384.36,#4,0.94123,-0.32027,0.10735,95.625,-0.33199,-0.93573,0.11914,144.48,0.062296,-0.14778,-0.98706,154.76

> view matrix models
> #1,0.66803,-0.52827,-0.52408,132.11,0.11574,-0.62195,0.77445,115.76,-0.73508,-0.57801,-0.35435,392.97,#4,0.94514,-0.2175,0.24373,97.611,-0.2568,-0.95585,0.14284,145.28,0.2019,-0.19759,-0.95927,155.98

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.605, correlation about mean = 0.06018, overlap = 367  
steps = 80, shift = 3.45, angle = 2.49 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.94790616 0.31796082 0.01936043 135.53430003  
0.13342804 -0.34111853 -0.93050260 113.56485699  
-0.28925917 0.88461238 -0.36577325 124.40396911  
Axis 0.98093678 0.16678631 -0.09972646  
Axis point 0.00000000 -2.02338557 99.96127080  
Rotation angle (degrees) 112.30226990  
Shift along axis 139.48527510  
  
Average map value = 0.07678 for 3543 atoms, 1652 outside contour  

> ui mousemode right "move picked models"

> view matrix models
> #4,0.943,-0.24394,0.22636,92.188,-0.27332,-0.95577,0.10865,153.02,0.18985,-0.16433,-0.96796,148.64

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6169, correlation about mean = 0.05467, overlap = 372.2  
steps = 100, shift = 2.04, angle = 10.7 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.96812291 0.24707173 -0.04115328 126.22769461  
0.01386179 -0.21689837 -0.97609576 110.92281617  
-0.25009175 0.94441021 -0.21340913 121.12653036  
Axis 0.98696842 0.10737570 -0.11984906  
Axis point 0.00000000 -5.75292615 107.39341338  
Rotation angle (degrees) 103.36138833  
Shift along axis 121.97626186  
  
Average map value = 0.07903 for 3543 atoms, 1663 outside contour  

> view matrix models
> #4,0.93741,-0.33648,0.089716,97.9,-0.33877,-0.9408,0.011167,146.26,0.080648,-0.040861,-0.9959,150.36

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.5902, correlation about mean = 0.0364, overlap = 373.8  
steps = 116, shift = 1.59, angle = 6.56 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.96407314 0.26563544 -0.00088155 137.04654841  
0.02814955 -0.10546222 -0.99402480 109.05233501  
-0.26414119 0.95828781 -0.10915081 121.49127874  
Axis 0.98390685 0.13267494 -0.11968575  
Axis point 0.00000000 -16.37476992 109.93044056  
Rotation angle (degrees) 97.19634513  
Shift along axis 134.76877480  
  
Average map value = 0.07849 for 3543 atoms, 1693 outside contour  

> view matrix models
> #4,0.94209,-0.32935,0.063227,93.362,-0.32248,-0.9414,-0.098848,141.72,0.092078,0.072735,-0.99309,151.1

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6185, correlation about mean = 0.0717, overlap = 383.5  
steps = 100, shift = 4.94, angle = 19.5 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.92884795 0.36707129 0.05000142 130.73136442  
-0.03013708 0.20939392 -0.97736684 111.52470830  
-0.36923330 0.90631829 0.20555757 131.23528653  
Axis 0.95607426 0.21278478 -0.20160519  
Axis point 0.00000000 -55.76578355 132.59913355  
Rotation angle (degrees) 80.10170870  
Shift along axis 122.26193769  
  
Average map value = 0.08113 for 3543 atoms, 1624 outside contour  

> view matrix models
> #4,0.97332,-0.21691,-0.074851,94.704,-0.22898,-0.89706,-0.37795,124.63,0.014836,0.38501,-0.92279,159.56

> view matrix models
> #4,0.97332,-0.21691,-0.074851,109.03,-0.22898,-0.89706,-0.37795,134.98,0.014836,0.38501,-0.92279,150.82

> view matrix models
> #4,0.97332,-0.21691,-0.074851,106.86,-0.22898,-0.89706,-0.37795,140.5,0.014836,0.38501,-0.92279,148.08

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.5461, correlation about mean = 0.04871, overlap = 332.5  
steps = 120, shift = 1.91, angle = 4.32 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.92388013 0.37738884 0.06342835 144.99934531  
-0.04806671 0.27887299 -0.95912431 107.41236370  
-0.37965127 0.88306710 0.27578506 121.43630331  
Axis 0.94865089 0.22816732 -0.21909167  
Axis point 0.00000000 -65.38759879 128.92852112  
Rotation angle (degrees) 76.15659442  
Shift along axis 135.45606713  
  
Average map value = 0.07135 for 3543 atoms, 1795 outside contour  

> view matrix models
> #4,0.97522,-0.19527,-0.10399,100.9,-0.22118,-0.87101,-0.43866,132.47,-0.0049152,0.45079,-0.89262,152.75

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.5741, correlation about mean = 0.0371, overlap = 368.2  
steps = 88, shift = 4.32, angle = 4.07 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.90928615 0.41572479 0.01927664 142.15506496  
-0.08214963 0.22470235 -0.97095843 109.91010492  
-0.40798300 0.88129549 0.23847038 131.60415866  
Axis 0.94261684 0.21743354 -0.25336958  
Axis point 0.00000000 -65.93321594 137.95267859  
Rotation angle (degrees) 79.26718003  
Shift along axis 124.55141079  
  
Average map value = 0.07769 for 3543 atoms, 1632 outside contour  

> view matrix models
> #4,0.97949,-0.16271,-0.11888,100.04,-0.19657,-0.90129,-0.38605,127.57,-0.044334,0.4015,-0.91479,154.32

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6048, correlation about mean = 0.04455, overlap = 367.4  
steps = 176, shift = 10.6, angle = 28 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.89558723 0.23831553 -0.37567167 132.63885422  
-0.36043749 -0.10630447 -0.92670608 109.99568876  
-0.26078403 0.96535230 -0.00930707 130.87804867  
Axis 0.95180643 -0.05779462 -0.30120475  
Axis point 0.00000000 -13.93850765 140.35362062  
Rotation angle (degrees) 96.31601613  
Shift along axis 80.46826514  
  
Average map value = 0.07815 for 3543 atoms, 1647 outside contour  

> ui mousemode right "translate selected atoms"

Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6006, correlation about mean = 0.05935, overlap = 373  
steps = 116, shift = 7.7, angle = 15.8 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.88477750 -0.00069151 -0.46601318 123.10878906  
-0.45471572 -0.22014148 -0.86300135 111.09322232  
-0.10199206 0.97546771 -0.19509066 128.12045951  
Axis 0.95337893 -0.18877123 -0.23544433  
Axis point 0.00000000 10.29674761 128.65865821  
Rotation angle (degrees) 105.38046067  
Shift along axis 66.23288580  
  
Average map value = 0.07991 for 3543 atoms, 1632 outside contour  
Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.593, correlation about mean = 0.06355, overlap = 374.8  
steps = 84, shift = 6.58, angle = 6.52 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.82997105 0.04073754 -0.55631690 117.94526225  
-0.53656347 -0.21430620 -0.81619390 114.95456763  
-0.15247190 0.97591664 -0.15600967 133.89853974  
Axis 0.93066488 -0.20972164 -0.29979946  
Axis point 0.00000000 10.67988657 136.64850555  
Rotation angle (degrees) 105.67452649  
Shift along axis 45.51634233  
  
Average map value = 0.08065 for 3543 atoms, 1654 outside contour  
Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6065, correlation about mean = 0.06982, overlap = 373.6  
steps = 128, shift = 8.58, angle = 9.12 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.87860702 0.13953907 -0.45670400 111.54310451  
-0.43767344 -0.14726802 -0.88699159 111.89032941  
-0.19102787 0.97920425 -0.06831817 138.39259755  
Axis 0.94663150 -0.13476473 -0.29279218  
Axis point 0.00000000 -4.29960071 139.30251307  
Rotation angle (degrees) 99.70001189  
Shift along axis 49.99107608  
  
Average map value = 0.08055 for 3543 atoms, 1683 outside contour  

> hide sel surfaces

> show sel cartoons

Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6065, correlation about mean = 0.06977, overlap = 373.6  
steps = 152, shift = 8.1, angle = 0.0021 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.87859821 0.13955763 -0.45671528 104.07822453  
-0.43767783 -0.14729724 -0.88698457 112.79612374  
-0.19105837 0.97919721 -0.06833381 141.40203352  
Axis 0.94662878 -0.13475562 -0.29280518  
Axis point 0.00000000 -4.66509082 139.57104383  
Rotation angle (degrees) 99.70157206  
Shift along axis 41.92028325  
  
Average map value = 0.08055 for 3543 atoms, 1681 outside contour  

> ui mousemode right "move picked models"

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,57.376,-0.56087,0.18846,-0.80617,307.23,0.10897,0.98208,0.15378,1.3854

> volume #6 style image

> volume #6 style mesh

> volume #6 color #cececee0

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,47.125,-0.56087,0.18846,-0.80617,304.43,0.10897,0.98208,0.15378,5.8261

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,49.635,-0.56087,0.18846,-0.80617,305.53,0.10897,0.98208,0.15378,4.4497

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,50.109,-0.56087,0.18846,-0.80617,305.85,0.10897,0.98208,0.15378,4.108

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> select subtract #4

3 models selected  

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,48.502,-0.56087,0.18846,-0.80617,307.27,0.10897,0.98208,0.15378,3.4991

> ui mousemode right "rotate selected models"

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.95982,0.20093,0.19591,73.617,0.1971,-0.97961,0.039049,128.07,0.19976,0.0011332,-0.97985,135.53

> view matrix models
> #4,0.55724,0.62881,0.54229,95.933,0.63723,-0.74257,0.20625,122.2,0.53238,0.23063,-0.81448,132.42

> view matrix models
> #4,-0.0046677,0.70125,0.7129,115.1,0.77477,-0.44818,0.44594,126.48,0.63222,0.55441,-0.54122,138.7

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.0046677,0.70125,0.7129,113.88,0.77477,-0.44818,0.44594,132.21,0.63222,0.55441,-0.54122,147

> view matrix models
> #4,-0.0046677,0.70125,0.7129,113.84,0.77477,-0.44818,0.44594,131.61,0.63222,0.55441,-0.54122,147.51

> view matrix models
> #4,-0.0046677,0.70125,0.7129,114.63,0.77477,-0.44818,0.44594,140.47,0.63222,0.55441,-0.54122,138.4

> view matrix models
> #4,-0.0046677,0.70125,0.7129,113.94,0.77477,-0.44818,0.44594,133.56,0.63222,0.55441,-0.54122,146.09

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.086984,-0.55409,0.8279,99.594,0.56393,-0.65769,-0.49943,118.5,0.82123,0.51032,0.25526,155.99

> view matrix models
> #4,0.38638,-0.0023402,0.92234,99.622,0.70065,-0.64959,-0.29516,118.9,0.59983,0.76028,-0.24935,154.94

> view matrix models
> #4,0.97946,-0.11642,0.16464,67.754,0.032933,-0.71315,-0.70024,128.19,0.19893,0.69128,-0.69466,156.25

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6071, correlation about mean = 0.05283, overlap = 390.2  
steps = 112, shift = 10, angle = 7.98 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.79676889 0.46736903 0.38304767 123.94690901  
0.16648176 0.43957939 -0.88264023 110.70548985  
-0.58089857 0.76703073 0.27243477 158.72171078  
Axis 0.85289459 0.49836880 -0.15556141  
Axis point 0.00000000 -117.66031137 123.23196979  
Rotation angle (degrees) 75.26246674  
Shift along axis 136.19483844  
  
Average map value = 0.08296 for 3543 atoms, 1635 outside contour  

> view matrix models
> #4,0.95529,-0.22914,0.18685,58.734,-0.064404,-0.77805,-0.62489,133.55,0.28857,0.58492,-0.75803,147.03

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6164, correlation about mean = 0.05334, overlap = 378.3  
steps = 92, shift = 6.18, angle = 6.99 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.86078123 0.36622668 0.35345960 114.35372876  
0.15689953 0.46970518 -0.86876900 111.10007624  
-0.48418819 0.80327770 0.34685261 157.89875048  
Axis 0.88853072 0.44512860 -0.11123709  
Axis point 0.00000000 -111.39938279 127.48097047  
Rotation angle (degrees) 70.20416604  
Shift along axis 133.49642539  
  
Average map value = 0.08108 for 3543 atoms, 1613 outside contour  

> view matrix models
> #4,-0.22372,0.43141,0.87398,106.06,0.92853,-0.17824,0.32567,135.61,0.29627,0.88437,-0.3607,156.76

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6278, correlation about mean = 0.06567, overlap = 386  
steps = 84, shift = 3.76, angle = 10.2 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
-0.74094435 0.39991030 0.53951201 160.00642466  
0.37361712 0.91302971 -0.16366732 124.90468595  
-0.55804274 0.08030255 -0.82591754 125.51909672  
Axis 0.21692947 0.97590728 -0.02337897  
Axis point 86.48186733 0.00000000 44.27975849  
Rotation angle (degrees) 145.78323767  
Shift along axis 153.67099429  
  
Average map value = 0.08204 for 3543 atoms, 1587 outside contour  

> ui mousemode right "move picked models"

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,49.254,-0.56087,0.18846,-0.80617,302.85,0.10897,0.98208,0.15378,-1.3489

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6261, correlation about mean = 0.07598, overlap = 384  
steps = 136, shift = 6.56, angle = 25 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
-0.78190886 0.24997127 0.57108046 160.59281845  
0.45791121 0.85192176 0.25406029 131.44363101  
-0.42300810 0.46015614 -0.78058982 128.51916328  
Axis 0.19887580 0.95926319 0.20065529  
Axis point 80.01046705 0.00000000 32.45588168  
Rotation angle (degrees) 148.79161723  
Shift along axis 183.81511267  
  
Average map value = 0.08125 for 3543 atoms, 1646 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.40075,-0.059122,0.91428,107.02,0.86587,-0.35061,0.35686,134.8,0.29946,0.93465,0.1917,167.93

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6261, correlation about mean = 0.07597, overlap = 384  
steps = 84, shift = 3.06, angle = 0.021 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
-0.78184071 0.25032644 0.57101818 160.59597877  
0.45816390 0.85183777 0.25388628 131.44653677  
-0.42286041 0.46011855 -0.78069199 128.52060011  
Axis 0.19904487 0.95924092 0.20059412  
Axis point 79.99848338 0.00000000 32.46836211  
Rotation angle (degrees) 148.79814274  
Shift along axis 183.83517874  
  
Average map value = 0.08125 for 3543 atoms, 1646 outside contour  

> select add #3

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #4

5 models selected  

> view matrix models #3,1,0,0,8.3169,0,1,0,8.65,0,0,1,-22.918

> view matrix models #3,1,0,0,14.411,0,1,0,13.1,0,0,1,-24.308

> view matrix models #3,1,0,0,20.381,0,1,0,16.857,0,0,1,-26.182

> view matrix models #3,1,0,0,24.9,0,1,0,14.758,0,0,1,-29.587

> select subtract #3

Nothing selected  

> select add #1

2 models selected  

> select subtract #1

Nothing selected  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #2

3 models selected  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> select subtract #2

3 models selected  

Cell requested for row 1 is out of bounds for table with 9 rows! Resizing
table model.  

> select add #6

3 models selected  

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,44.867,-0.56087,0.18846,-0.80617,308.03,0.10897,0.98208,0.15378,3.0439

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> hide #!6 models

> view matrix models
> #6,0.8207,-0.0015957,-0.57136,45.264,-0.56087,0.18846,-0.80617,306.99,0.10897,0.98208,0.15378,2.45

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,-0.40078,-0.058809,0.91428,125.47,0.86576,-0.35079,0.35695,122.47,0.29973,0.9346,0.19151,150.34,#6,0.8207,-0.0015957,-0.57136,63.32,-0.56087,0.18846,-0.80617,295.53,0.10897,0.98208,0.15378,-12.217

> view matrix models
> #4,-0.40078,-0.058809,0.91428,125.5,0.86576,-0.35079,0.35695,122.25,0.29973,0.9346,0.19151,150.24,#6,0.8207,-0.0015957,-0.57136,63.347,-0.56087,0.18846,-0.80617,295.31,0.10897,0.98208,0.15378,-12.31

> view matrix models
> #4,-0.40078,-0.058809,0.91428,127.31,0.86576,-0.35079,0.35695,119.08,0.29973,0.9346,0.19151,148.07,#6,0.8207,-0.0015957,-0.57136,65.163,-0.56087,0.18846,-0.80617,292.14,0.10897,0.98208,0.15378,-14.482

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> show #!6 models

> hide #!6 models

> view matrix models
> #4,-0.40078,-0.058809,0.91428,128.67,0.86576,-0.35079,0.35695,115.9,0.29973,0.9346,0.19151,146.9,#6,0.8207,-0.0015957,-0.57136,66.521,-0.56087,0.18846,-0.80617,288.95,0.10897,0.98208,0.15378,-15.652

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.00053663,-0.093263,0.99564,119.12,0.49187,-0.86685,-0.081464,111.59,0.87067,0.48977,0.045409,123.78,#6,0.54476,0.17358,-0.82043,112.61,-0.64808,-0.53374,-0.54325,356.85,-0.53219,0.82764,-0.17827,129.95

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select subtract #4

6 models selected  

> show #!6 models

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> hide #!6 models

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 11 models selected  

> show #!2 models

> select subtract #2

6 models selected  

> hide #!2 models

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> view #6 clip false

> view matrix models
> #6,0.70977,-0.68176,-0.17728,90.92,-0.47329,-0.27513,-0.83684,351.77,0.52175,0.67787,-0.51795,73.043

> view matrix models
> #6,0.68047,-0.70784,-0.18955,99.022,-0.52559,-0.29121,-0.79935,354.09,0.51061,0.64355,-0.57019,85.851

> view matrix models
> #6,0.72083,-0.64852,-0.2446,95.999,-0.54656,-0.31483,-0.77599,355.66,0.42624,0.69304,-0.58139,92.022

> view matrix models
> #6,0.68731,-0.72595,0.024586,68.387,-0.25339,-0.27134,-0.92853,339.17,0.68074,0.63196,-0.37044,37.479

> ui mousemode right rotate

> hide #!4 models

> show #!4 models

> hide #!6 models

> hide #!4 models

> show #!6 models

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #6

3 models selected  

> volume #6 style surface

> show #!4 models

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> hide #!6 models

> ui mousemode right translate

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> show #!6 models

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> select add #6

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 9 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.00053663,-0.093263,0.99564,116.94,0.49187,-0.86685,-0.081464,111.31,0.87067,0.48977,0.045409,124.81,#6,0.68731,-0.72595,0.024586,66.207,-0.25339,-0.27134,-0.92853,338.89,0.68074,0.63196,-0.37044,38.517

> hide #!6 models

> view matrix models
> #4,0.00053663,-0.093263,0.99564,93.885,0.49187,-0.86685,-0.081464,116.98,0.87067,0.48977,0.045409,138.67,#6,0.68731,-0.72595,0.024586,43.153,-0.25339,-0.27134,-0.92853,344.57,0.68074,0.63196,-0.37044,52.369

> show #!6 models

> select subtract #4

6 models selected  

> select add #6

3 models selected  

> volume #6 style image colorMode opaque8 showOutlineBox true imageMode "box
> faces"

> volume #6 region 0,0,149,299,299,149 step 1 colorMode auto8 imageMode "full
> region"

> volume #6 region 0,0,0,299,299,299 step 1

> volume #6 region 0,0,0,299,299,299 step 1 imageMode "tilted slab"
> tiltedSlabAxis -0.9548,-0.2943,0.04093 tiltedSlabOffset -176.7
> tiltedSlabSpacing 0.839 tiltedSlabPlaneCount 60

> volume #6 tiltedSlabAxis -0.9794,-0.1459,0.1397 tiltedSlabOffset -150.5

> volume #6 style surface

> select add #6

3 models selected  

> select add #6

3 models selected  

> select add #2

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 11 models selected  

> hide #!6 target m

> show #!3 target m

> hide #!4 target m

> show #!4 target m

> hide #!3 target m

> show #!5 target m

> hide #!4 target m

> show #!6 target m

> hide #!5 target m

> show #!4 models

> select subtract #2

6 models selected  

> select add #6

3 models selected  

> volume #6 tiltedSlabAxis -0.9017,0.4083,-0.1421 tiltedSlabOffset -134.7

> ui mousemode right "translate selected models"

> view matrix models
> #6,0.68731,-0.72595,0.024586,66.238,-0.25339,-0.27134,-0.92853,331.31,0.68074,0.63196,-0.37044,35.972

> view matrix models
> #6,0.68731,-0.72595,0.024586,72.41,-0.25339,-0.27134,-0.92853,337.31,0.68074,0.63196,-0.37044,34.771

> fitmap #4 inMap #6 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip using 13679 points  
correlation = 0.6159, correlation about mean = 0.07574, overlap = 369  
steps = 108, shift = 3.84, angle = 3.14 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J339_004_volume_map_sharp.mrc z flip (#6) coordinates:  
Matrix rotation and translation  
0.49841102 0.48573119 0.71808889 138.79212765  
0.43742069 0.57424057 -0.69203388 106.01696698  
-0.74849822 0.65902426 0.07373896 163.41789708  
Axis 0.67734597 0.73526582 -0.02422022  
Axis point 143.12415931 0.00000000 65.16390347  
Rotation angle (degrees) 85.80246575  
Shift along axis 168.00292314  
  
Average map value = 0.07912 for 3543 atoms, 1661 outside contour  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> view matrix models
> #4,0.0066131,-0.066821,0.99774,95.714,0.45002,-0.89082,-0.062643,115.98,0.89299,0.44942,0.02418,133.38,#6,0.68731,-0.72595,0.024586,73.266,-0.25339,-0.27134,-0.92853,331.66,0.68074,0.63196,-0.37044,32.443

> ui mousemode right translate

> ui mousemode right rotate

> close #6

> show #!1 models

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> hide #!1 models

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> select subtract #4

3 models selected  

> ui mousemode right "move picked models"

> open /Users/mansoore.esmaili/Downloads/J59.volume_class_0.map_sharp.json

Opening an AlphaFold PAE file requires first opening the predicted atomic
model. Did not find an open atomic model from the same directory. If the
atomic model is already open choose it using menu  
  
Tools / Structure Prediction / AlphaFold Error Plot  
  
or use the open command structure option, for example  
  
open /Users/mansoore.esmaili/Downloads/J59.volume_class_0.map_sharp.json
structure #1  
  
If you are trying to open a JSON file that is not AlphaFold PAE data then you
need to specify the specific JSON format such as  
  
open mole_channels.json format mole  

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc

Opened cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc as #6, grid size
128,128,128, pixel 1.97, shown at level 0.159, step 1, values float32  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.0066131,-0.066821,0.99774,144.3,0.45002,-0.89082,-0.062643,103.61,0.89299,0.44942,0.02418,132.92

> fitmap #6 inMap #5 metric correlation

Fit map cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc in map
2qe3-assembly1.cif map 5 using 20964 points  
correlation = 0.6524, correlation about mean = 0.4079, overlap = 1203  
steps = 396, shift = 52.7, angle = 55.2 degrees  
  
Position of cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#6) relative
to 2qe3-assembly1.cif map 5 (#5) coordinates:  
Matrix rotation and translation  
0.06568109 0.37283305 0.92557092 -151.10310807  
0.77440698 -0.60400277 0.18834677 -57.00321334  
0.62926929 0.70439775 -0.32839607 -144.45931251  
Axis 0.71884489 0.41274006 0.55938150  
Axis point 0.00000000 18.14975412 -9.44864141  
Rotation angle (degrees) 158.96460600  
Shift along axis -212.95507413  
  

> select subtract #4

3 models selected  

> show #!5 models

> hide #!5 models

> show target m

> hide target m

> show #!4 models

> view matrix models
> #4,0.0066131,-0.066821,0.99774,88.823,0.45002,-0.89082,-0.062643,130.88,0.89299,0.44942,0.02418,173.19

> hide #!4 models

> show #!5 models

> select add #5

2 models selected  

> volume #5 style image

> fitmap #6 inMap #5 metric correlation

Fit map cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc in map
2qe3-assembly1.cif map 5 using 20964 points  
correlation = 0.6524, correlation about mean = 0.4078, overlap = 1203  
steps = 48, shift = 0.0316, angle = 0.0727 degrees  
  
Position of cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#6) relative
to 2qe3-assembly1.cif map 5 (#5) coordinates:  
Matrix rotation and translation  
0.06505178 0.37378222 0.92523247 -151.11512988  
0.77476166 -0.60326816 0.18924032 -57.27623559  
0.62889796 0.70452423 -0.32883580 -144.38932694  
Axis 0.71864755 0.41328687 0.55923131  
Axis point -0.00000000 18.07337194 -9.42959610  
Rotation angle (degrees) 158.99131427  
Shift along axis -213.01706686  
  

> show #!6 models

> hide #!6 models

> hide #!5 models

> close #5

> show #4.2 models

> show #4.3 models

> hide #4.3 models

> show #!6 models

> close #1

> close #3

> close #6

> hide #4.2 models

> show #!4.1 models

> hide #!4.1 models

> show #4.2 models

> show #4.3 models

> show #4.4 models

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc

Opened cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc as #1, grid size
128,128,128, pixel 1.97, shown at level 0.159, step 1, values float32  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  
Opened 2qe3-assembly1.cif map 5 as #5, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = -0.1474, correlation about mean = 0.04851, overlap = -12.88  
steps = 128, shift = 25, angle = 40.2 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#5) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.33724332 -0.50172964 0.79657661 66.03352595  
0.64979536 -0.48820402 -0.58260005 140.19817539  
0.68119962 0.71408976 0.16137805 170.70647055  
Axis 0.74607145 0.06638402 0.66254853  
Axis point 0.00000000 44.96728684 106.21569735  
Rotation angle (degrees) 119.65599097  
Shift along axis 171.67396780  
  
Average map value = -0.002546 for 3543 atoms, 3543 outside contour  

> view matrix models #1,1,0,0,-27.695,0,1,0,2.5142,0,0,1,17.696

> select add #1

2 models selected  

> view matrix models #1,1,0,0,-51.881,0,1,0,1.9791,0,0,1,32.354

> select subtract #1

Nothing selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.33724,-0.50173,0.79658,144.37,0.6498,-0.4882,-0.5826,133.09,0.6812,0.71409,0.16138,178.81

> view matrix models
> #4,0.33724,-0.50173,0.79658,140.34,0.6498,-0.4882,-0.5826,132.79,0.6812,0.71409,0.16138,178.96

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.56923,0.17341,0.80368,141.87,0.77513,-0.4391,-0.45426,132.48,0.27412,0.88154,-0.38437,181.15

> view matrix models
> #4,0.43018,0.89518,0.11658,140.37,0.80561,-0.3224,-0.49705,132.14,-0.40736,0.30773,-0.85986,183.71

> select subtract #4

3 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,0.60387,0.025744,0.79667,139.14,0.73304,-0.41046,-0.54238,132.22,0.31304,0.91152,-0.26673,182.73

> view matrix models
> #4,0.66786,0.50117,0.55027,137.99,0.74395,-0.47197,-0.47306,132.58,0.022627,0.72531,-0.68805,180.23

> color #4 #d0e8ecff

> view matrix models
> #4,0.19185,-0.61693,0.76328,142.29,0.44176,-0.6402,-0.62848,135.76,0.87638,0.45776,0.14971,170.62

> view matrix models
> #4,-0.33564,-0.72558,0.60074,152.03,0.78059,-0.5712,-0.25378,134.74,0.52728,0.38375,0.7581,190.95

> ui mousemode right rotate

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.34602,-0.73001,0.58937,152.04,0.78114,-0.57211,-0.25002,134.78,0.5197,0.37387,0.7682,191.23

> view matrix models
> #4,-0.34602,-0.73001,0.58937,135.06,0.78114,-0.57211,-0.25002,151.52,0.5197,0.37387,0.7682,189.7

> view matrix models
> #4,-0.34602,-0.73001,0.58937,146.17,0.78114,-0.57211,-0.25002,148.71,0.5197,0.37387,0.7682,190.02

> ui mousemode right pivot

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.35351,-0.7471,0.56291,145.67,0.80757,-0.54744,-0.21941,148.88,0.47208,0.37703,0.79686,191.89

> view matrix models
> #4,-0.36572,-0.7545,0.54495,145.56,0.79407,-0.55836,-0.24016,148.71,0.48548,0.3449,0.80334,191.3

> ui mousemode right select

Drag select of 3 residues  

> ui mousemode right select

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  
Drag select of 8 residues  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 5 models selected  

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #4,-0.36572,-0.7545,0.54495,82.971,0.79407,-0.55836,-0.24016,91.118,0.48548,0.3449,0.80334,195.47

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 140, shift = 21.8, angle = 53.5 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72371529 0.04711717 0.68848830 159.07576956  
0.36916953 -0.81647777 0.44393456 115.41506535  
0.58305234 0.57545113 0.57350323 137.53857599  
Axis 0.36180787 0.29005896 0.88598017  
Axis point 48.67925818 39.43662316 0.00000000  
Rotation angle (degrees) 169.52833830  
Shift along axis 212.88849003  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  

> volume #1 color #b2b2b280

> volume #1 color #b2b2b25b

> volume #1 color #b2b2b25c

> view matrix models #1,1,0,0,-52.764,0,1,0,0.77746,0,0,1,32.453

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 1.47, angle = 0.0453 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72381036 0.04698271 0.68839755 159.08685528  
0.36874717 -0.81692058 0.44347073 115.42820340  
0.58320158 0.57483336 0.57397084 137.53686550  
Axis 0.36176290 0.28970186 0.88611536  
Axis point 48.69134402 39.47096445 0.00000000  
Rotation angle (degrees) 169.53941882  
Shift along axis 212.86501654  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> view matrix models #1,1,0,0,-50.743,0,1,0,2.6676,0,0,1,32.306

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 64, shift = 2.75, angle = 0.0661 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72316198 0.04766669 0.68903166 159.06805063  
0.36883428 -0.81680561 0.44361002 115.42975452  
0.58395035 0.57494040 0.57310165 137.50131489  
Axis 0.36224644 0.28984405 0.88587129  
Axis point 48.64944545 39.44798961 0.00000000  
Rotation angle (degrees) 169.55613215  
Shift along axis 212.88692916  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> view matrix models #1,1,0,0,-49.455,0,1,0,3.018,0,0,1,32.29

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 64, shift = 1.33, angle = 0.0952 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72367452 0.04714449 0.68852929 159.07134929  
0.36966348 -0.81599822 0.44440500 115.39732077  
0.58278992 0.57612871 0.57308952 137.54546697  
Axis 0.36180399 0.29043309 0.88585918  
Axis point 48.67267645 39.40126590 0.00000000  
Rotation angle (degrees) 169.51154520  
Shift along axis 212.91376477  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  

> select add #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 8 models selected  

> ui mousemode right zoom

> select subtract #1

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 6 models selected  

> ui mousemode right "translate selected atoms"

Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 52, shift = 2.77, angle = 0.0819 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72380498 0.04699882 0.68840210 159.22780668  
0.36885155 -0.81681071 0.44358628 118.15951785  
0.58314224 0.57498814 0.57387607 137.55558052  
Axis 0.36176044 0.28978929 0.88608778  
Axis point 48.62915268 40.81866664 0.00000000  
Rotation angle (degrees) 169.53618743  
Shift along axis 213.73000311  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.921, angle = 0.0717 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72315630 0.04772247 0.68903376 158.80901985  
0.36907528 -0.81653590 0.44390600 117.34514292  
0.58380510 0.57531876 0.57286990 137.50484187  
Axis 0.36223720 0.29006116 0.88580401  
Axis point 48.42642580 40.36744244 0.00000000  
Rotation angle (degrees) 169.54923860  
Shift along axis 213.36614236  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 56, shift = 3.55, angle = 0.114 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72428585 0.04651951 0.68792872 157.11422637  
0.36913374 -0.81653518 0.44385872 120.46742937  
0.58236610 0.57541830 0.57423296 137.50866754  
Axis 0.36137923 0.28996855 0.88618468  
Axis point 47.48827236 41.87590177 0.00000000  
Rotation angle (degrees) 169.51231038  
Shift along axis 213.56765900  
  
Average map value = 0.3851 for 3543 atoms, 605 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 52, shift = 1.3, angle = 0.0428 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385443 0.04695516 0.68835308 158.41373596  
0.36909627 -0.81656600 0.44383320 120.57404711  
0.58292598 0.57533918 0.57374394 137.53637229  
Axis 0.36170686 0.28997696 0.88604826  
Axis point 48.10917936 41.96880278 0.00000000  
Rotation angle (degrees) 169.52623369  
Shift along axis 214.12689318  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.608, angle = 0.0481 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72338250 0.04744907 0.68881516 158.37555449  
0.36898728 -0.81665515 0.44375978 119.96766681  
0.58358044 0.57517210 0.57324594 137.50626275  
Axis 0.36207049 0.28994533 0.88591008  
Axis point 48.09668901 41.66023206 0.00000000  
Rotation angle (degrees) 169.54440754  
Shift along axis 213.94536275  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 56, shift = 0.855, angle = 0.0603 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385737 0.04694649 0.68835058 157.74292905  
0.36938353 -0.81628605 0.44410908 119.39071271  
0.58274034 0.57573700 0.57353342 137.51116514  
Axis 0.36168467 0.29019379 0.88598632  
Axis point 47.83017338 41.34400536 0.00000000  
Rotation angle (degrees) 169.51576227  
Shift along axis 213.53265436  
  
Average map value = 0.385 for 3543 atoms, 604 outside contour  

> select subtract #4

3 models selected  

> select add #1

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.99996,0.0026024,-0.0090576,-48.644,-0.0020989,0.99848,0.055159,-3.4689,0.0091874,-0.055138,0.99844,38.427

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 52, shift = 0.477, angle = 3.2 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72361065 0.04719246 0.68859312 157.71798418  
0.36935619 -0.81631157 0.44408492 119.36338849  
0.58306399 0.57568071 0.57326093 137.49831330  
Axis 0.36187213 0.29019203 0.88591035  
Axis point 47.80667226 41.32459547 0.00000000  
Rotation angle (degrees) 169.52384114  
Shift along axis 213.52322529  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  

> view matrix models
> #1,0.99979,-0.00043564,-0.02041,-46.79,0.0016004,0.99837,0.057088,-4.2029,0.020352,-0.057109,0.99816,37.197

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-42.531,0.032012,0.99783,0.057571,-8.3397,0.020425,-0.058241,0.99809,37.343

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.369, angle = 2.07 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72380642 0.04700082 0.68840044 157.73502257  
0.36962551 -0.81604431 0.44435194 119.35681905  
0.58265018 0.57607516 0.57328542 137.51056267  
Axis 0.36170665 0.29038596 0.88591438  
Axis point 47.82404335 41.31285021 0.00000000  
Rotation angle (degrees) 169.50872997  
Shift along axis 213.53593626  
  
Average map value = 0.3851 for 3543 atoms, 608 outside contour  

> select subtract #1

Nothing selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,-0.72179,0.090349,0.68619,108.48,0.35188,-0.80584,0.47624,123.73,0.59598,0.5852,0.54986,169.11

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 52, shift = 0.0672, angle = 3.67 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72375965 0.04705949 0.68844561 157.72778573  
0.36929744 -0.81636045 0.44404392 119.36014137  
0.58291625 0.57562228 0.57346981 137.50417976  
Axis 0.36176498 0.29014518 0.88596945  
Axis point 47.81981872 41.32937773 0.00000000  
Rotation angle (degrees) 169.52210717  
Shift along axis 213.51666232  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.74757,0.059344,0.66153,107.59,0.37889,-0.77994,0.49813,124.27,0.54551,0.62303,0.56058,170.83

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.947, angle = 0.00899 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72384288 0.04696752 0.68836438 157.74098338  
0.36927350 -0.81639040 0.44400877 119.35600766  
0.58282806 0.57558731 0.57359453 137.50784870  
Axis 0.36170348 0.29011457 0.88600459  
Axis point 47.83100439 41.33193403 0.00000000  
Rotation angle (degrees) 169.52029054  
Shift along axis 213.51496396  
  
Average map value = 0.385 for 3543 atoms, 608 outside contour  

> select subtract #4

3 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.61108,0.098353,0.78544,107.85,0.4921,-0.73,0.47427,120.88,0.62002,0.67633,0.39769,166.17

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 52, shift = 0.25, angle = 11.9 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72381309 0.04698488 0.68839452 157.74997528  
0.36904330 -0.81662540 0.44376794 119.39034260  
0.58301084 0.57525243 0.57374470 137.50453689  
Axis 0.36174091 0.28993220 0.88604900  
Axis point 47.83351867 41.36128913 0.00000000  
Rotation angle (degrees) 169.52896167  
Shift along axis 213.51548213  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> select subtract #4

3 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #4,-0.76556,0.041107,0.64205,108.27,0.38635,-0.7686,0.50988,123.9,0.51444,0.6384,0.57253,171.97

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 48, shift = 0.0403, angle = 2.12 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72389918 0.04690505 0.68830944 157.75778467  
0.36887443 -0.81678871 0.44360776 119.39501873  
0.58301083 0.57502705 0.57397060 137.50606611  
Axis 0.36168803 0.28979953 0.88611399  
Axis point 47.84269685 41.37470367 0.00000000  
Rotation angle (degrees) 169.53266528  
Shift along axis 213.50577124  
  
Average map value = 0.385 for 3543 atoms, 605 outside contour  

> ui mousemode right "translate selected atoms"

Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 52, shift = 1.05, angle = 0.084 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72394650 0.04686959 0.68826208 156.85316923  
0.36972044 -0.81594571 0.44445404 118.87325187  
0.58241587 0.57622551 0.57337240 137.48318450  
Axis 0.36159521 0.29045348 0.88593774  
Axis point 47.41457508 41.03835481 0.00000000  
Rotation angle (degrees) 169.50157240  
Shift along axis 213.04604586  
  
Average map value = 0.3851 for 3543 atoms, 607 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.407, angle = 0.0894 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72379633 0.04702245 0.68840958 156.49159662  
0.36882125 -0.81683086 0.44357437 118.68470872  
0.58317214 0.57495759 0.57387630 137.44933642  
Axis 0.36176988 0.28977625 0.88608819  
Axis point 47.24128879 40.97488645 0.00000000  
Rotation angle (degrees) 169.53796547  
Shift along axis 212.79818974  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  
Opened 2qe3-assembly1.cif map 5 as #3, grid size 54,54,54, pixel 1.67, shown
at level 0.105, step 1, values float32  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 48, shift = 0.655, angle = 0.0356 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385203 0.04695385 0.68835570 155.83962166  
0.36918704 -0.81647876 0.44391818 118.64067212  
0.58287148 0.57546309 0.57367505 137.40443982  
Axis 0.36170225 0.29004453 0.88602802  
Axis point 46.92445771 40.91624850 0.00000000  
Rotation angle (degrees) 169.52296412  
Shift along axis 212.52280367  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.029, angle = 0.0312 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72375642 0.04706295 0.68844877 155.83151451  
0.36947939 -0.81618055 0.44422324 118.61494022  
0.58280495 0.57587705 0.57332713 137.40258197  
Axis 0.36175498 0.29028537 0.88592761  
Axis point 46.91528273 40.88455404 0.00000000  
Rotation angle (degrees) 169.51573718  
Shift along axis 212.53374988  
  
Average map value = 0.385 for 3543 atoms, 608 outside contour  

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.76208,0.034221,0.64658,106.33,0.42908,-0.72116,0.54389,123.09,0.4849,0.69192,0.53489,172.27

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.116, angle = 5.46 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72371809 0.04710297 0.68848633 155.82932188  
0.36937253 -0.81628472 0.44412067 118.61802667  
0.58292028 0.57572610 0.57336148 137.39942388  
Axis 0.36179123 0.29020741 0.88593835  
Axis point 46.91270809 40.89051731 0.00000000  
Rotation angle (degrees) 169.52069587  
Shift along axis 212.52893137  
  
Average map value = 0.385 for 3543 atoms, 607 outside contour  

> view matrix models
> #4,-0.80848,0.030898,0.58772,106.29,0.29342,-0.8445,0.44803,123.44,0.51017,0.53466,0.67369,172.93

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 56, shift = 0.16, angle = 8.68 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72387623 0.04692312 0.68833234 155.83870830  
0.36937128 -0.81630121 0.44409142 118.62945898  
0.58272468 0.57571742 0.57356899 137.40817867  
Axis 0.36167105 0.29018001 0.88599640  
Axis point 46.92461286 40.90196102 0.00000000  
Rotation angle (degrees) 169.51551709  
Shift along axis 212.52939792  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> ui mousemode right "move picked models"

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-43.046,0.032012,0.99783,0.057571,-8.484,0.020425,-0.058241,0.99809,37.304

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 0.535, angle = 0.0541 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72347897 0.04731329 0.68872318 155.84397879  
0.36899005 -0.81667864 0.44371424 118.61880959  
0.58345910 0.57514993 0.57339169 137.38171751  
Axis 0.36199551 0.28991463 0.88595076  
Axis point 46.91037693 40.90779326 0.00000000  
Rotation angle (degrees) 169.54033730  
Shift along axis 212.51758690  
  
Average map value = 0.385 for 3543 atoms, 606 outside contour  

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-41.881,0.032012,0.99783,0.057571,-10.916,0.020425,-0.058241,0.99809,37.79

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 72, shift = 2.74, angle = 0.0452 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72389740 0.04688632 0.68831259 155.85313573  
0.36917972 -0.81650066 0.44388400 118.62179298  
0.58281977 0.57543752 0.57375322 137.40572073  
Axis 0.36166732 0.29002116 0.88604993  
Axis point 46.93459166 40.91071095 0.00000000  
Rotation angle (degrees) 169.52124646  
Shift along axis 212.51814502  
  
Average map value = 0.3851 for 3543 atoms, 606 outside contour  

> select subtract #4

3 models selected  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.0303, angle = 0.0704 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72391323 0.04693519 0.68829260 155.83312718  
0.36985511 -0.81579133 0.44462534 118.60482556  
0.58237171 0.57643871 0.57320292 137.41452512  
Axis 0.36161290 0.29058023 0.88588896  
Axis point 46.92251750 40.86189671 0.00000000  
Rotation angle (degrees) 169.49871571  
Shift along axis 212.54949607  
  
Average map value = 0.3851 for 3543 atoms, 607 outside contour  

> volume #1 level 0.1319

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0445, angle = 0.0565 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385594 0.04694331 0.68835230 155.83561568  
0.36931229 -0.81635938 0.44403353 118.64495177  
0.58278726 0.57563328 0.57358986 137.40685912  
Axis 0.36169035 0.29013623 0.88600285  
Axis point 46.92155377 40.91201111 0.00000000  
Rotation angle (degrees) 169.51819799  
Shift along axis 212.53030722  
  
Average map value = 0.385 for 3543 atoms, 489 outside contour  

> volume #1 level 0.1022

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.029, angle = 0.00987 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72380654 0.04700473 0.68840006 155.83303360  
0.36921975 -0.81644262 0.44395744 118.61601835  
0.58290725 0.57551020 0.57359144 137.40197007  
Axis 0.36173455 0.29007673 0.88600429  
Axis point 46.91995902 40.90063171 0.00000000  
Rotation angle (degrees) 169.52327801  
Shift along axis 212.51667499  
  
Average map value = 0.385 for 3543 atoms, 366 outside contour  

> volume #1 level 0.06837

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 44, shift = 0.0315, angle = 0.0764 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72456748 0.04620589 0.68765323 155.86004281  
0.36922320 -0.81646949 0.44390517 118.61736972  
0.58195892 0.57553678 0.57452696 137.44091365  
Axis 0.36115902 0.28999458 0.88626593  
Axis point 46.97146067 40.92394387 0.00000000  
Rotation angle (degrees) 169.50003200  
Shift along axis 212.49785455  
  
Average map value = 0.3851 for 3543 atoms, 246 outside contour  

> volume #1 level 0.05567

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0287, angle = 0.0743 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72382848 0.04698456 0.68837836 155.83721266  
0.36923116 -0.81643038 0.44397046 118.60947073  
0.58287276 0.57552921 0.57360740 137.40271669  
Axis 0.36171736 0.29008488 0.88600864  
Axis point 46.92351812 40.89750232 0.00000000  
Rotation angle (degrees) 169.52229143  
Shift along axis 212.51583388  
  
Average map value = 0.385 for 3543 atoms, 221 outside contour  

> surface dust #1 size 19.7

> volume #1 level 0.04438

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0355, angle = 0.00932 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385220 0.04695320 0.68835556 155.83622384  
0.36914503 -0.81652054 0.44387626 118.64425833  
0.58289787 0.57540385 0.57370766 137.40420678  
Axis 0.36170496 0.29001194 0.88603758  
Axis point 46.92276622 40.92006954 0.00000000  
Rotation angle (degrees) 169.52443842  
Shift along axis 212.52027735  
  
Average map value = 0.385 for 3543 atoms, 200 outside contour  

> volume #1 level 0.03732

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0286, angle = 0.00777 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72383558 0.04696906 0.68837195 155.83320580  
0.36906807 -0.81659685 0.44379988 118.61543942  
0.58296724 0.57529425 0.57374708 137.40168706  
Axis 0.36172268 0.28995367 0.88604942  
Axis point 46.92235256 40.90949892 0.00000000  
Rotation angle (degrees) 169.52763214  
Shift along axis 212.50607141  
  
Average map value = 0.385 for 3543 atoms, 177 outside contour  

> surface dust #1 size 19.7

[Repeated 1 time(s)]

> volume #1 level 0.04296

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.00155, angle = 0.025 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385255 0.04694111 0.68835602 155.83446484  
0.36882143 -0.81684737 0.44354382 118.61323775  
0.58310224 0.57494078 0.57396416 137.39959314  
Axis 0.36172612 0.28975586 0.88611272  
Axis point 46.92530400 40.92260640 0.00000000  
Rotation angle (degrees) 169.53557831  
Shift along axis 212.48980456  
  
Average map value = 0.385 for 3543 atoms, 194 outside contour  

> volume #1 level 0.04438

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-40.538,0.032012,0.99783,0.057571,-11.628,0.020425,-0.058241,0.99809,38.07

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 1.54, angle = 0.0939 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72363718 0.04718819 0.68856554 155.82471235  
0.36972836 -0.81592970 0.44447683 118.60781634  
0.58279513 0.57622217 0.57299025 137.39974213  
Axis 0.36182801 0.29048995 0.88583073  
Axis point 46.90478038 40.86418417 0.00000000  
Rotation angle (degrees) 169.51050774  
Shift along axis 212.54903785  
  
Average map value = 0.385 for 3543 atoms, 198 outside contour  

> volume #1 level 0.09378

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.7698,0.038519,0.63712,108.36,0.38176,-0.77217,0.50795,119.8,0.51153,0.63425,0.57971,172.72

> view matrix models
> #4,-0.78523,0.028746,0.61854,108.29,0.3584,-0.79349,0.49186,119.87,0.50495,0.6079,0.61277,173.27

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.0452, angle = 3.92 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72388228 0.04693580 0.68832512 155.85536374  
0.36910421 -0.81655292 0.44385066 118.62662269  
0.58288637 0.57535932 0.57376398 137.40220125  
Axis 0.36168585 0.28998623 0.88605380  
Axis point 46.93564016 40.91480234 0.00000000  
Rotation angle (degrees) 169.52540258  
Shift along axis 212.51650922  
  
Average map value = 0.3851 for 3543 atoms, 332 outside contour  

> view matrix models
> #4,-0.67097,0.10843,0.73352,108.46,0.46912,-0.70401,0.53319,118.82,0.57422,0.70186,0.4215,168.9

> view matrix models
> #4,-0.71111,0.060107,0.70051,108.38,0.49713,-0.66157,0.56142,119.05,0.49718,0.74747,0.44057,171.43

> ui mousemode right "move picked models"

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-40.056,0.032012,0.99783,0.057571,-12.91,0.020425,-0.058241,0.99809,38.329

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 56, shift = 1.24, angle = 10.4 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72387006 0.04699637 0.68833383 155.83122771  
0.36996161 -0.81567398 0.44475200 118.60479086  
0.58235773 0.57659976 0.57305513 137.41339305  
Axis 0.36163914 0.29067697 0.88584651  
Axis point 46.91890327 40.85392366 0.00000000  
Rotation angle (degrees) 169.49671640  
Shift along axis 212.55752645  
  
Average map value = 0.3851 for 3543 atoms, 331 outside contour  

> volume #1 level 0.06978

> ui mousemode right "rotate selected models"

> ui mousemode right rotate

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0465, angle = 0.0785 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72384155 0.04695972 0.68836632 155.83783364  
0.36920339 -0.81646551 0.44392896 118.64495597  
0.58287414 0.57548141 0.57365397 137.40450467  
Axis 0.36170875 0.29005500 0.88602194  
Axis point 46.92264004 40.91740322 0.00000000  
Rotation angle (degrees) 169.52254674  
Shift along axis 212.52487604  
  
Average map value = 0.385 for 3543 atoms, 249 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0309, angle = 0.00754 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72379909 0.04701318 0.68840731 155.83238795  
0.36925733 -0.81640481 0.44399572 118.61524112  
0.58289269 0.57556315 0.57355310 137.40205542  
Axis 0.36173765 0.29010684 0.88599317  
Axis point 46.91908479 40.89798401 0.00000000  
Rotation angle (degrees) 169.52218717  
Shift along axis 212.51881651  
  
Average map value = 0.385 for 3543 atoms, 248 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.0152, angle = 0.076 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72386751 0.04705065 0.68833281 155.83106536  
0.36996329 -0.81563889 0.44481497 118.60683709  
0.58235984 0.57664498 0.57300748 137.41250327  
Axis 0.36164395 0.29071138 0.88583325  
Axis point 46.91892524 40.85141852 0.00000000  
Rotation angle (degrees) 169.49828773  
Shift along axis 212.56028339  
  
Average map value = 0.3851 for 3543 atoms, 247 outside contour  

> ui mousemode right rotate

> volume #1 level 0.1277

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0445, angle = 0.0869 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72384438 0.04695883 0.68836340 155.83917896  
0.36915225 -0.81651476 0.44388089 118.64288883  
0.58290301 0.57541159 0.57369467 137.40378534  
Axis 0.36171023 0.29001672 0.88603387  
Axis point 46.92390516 40.91911661 0.00000000  
Rotation angle (degrees) 169.52434176  
Shift along axis 212.52145331  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.03, angle = 0.0219 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72377865 0.04703717 0.68842716 155.83196607  
0.36935524 -0.81630567 0.44409656 118.61530972  
0.58285604 0.57570179 0.57345119 137.40219980  
Axis 0.36174654 0.29018595 0.88596363  
Axis point 46.91730097 40.89209264 0.00000000  
Rotation angle (degrees) 169.51940306  
Shift along axis 212.52552288  
  
Average map value = 0.385 for 3543 atoms, 472 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.0141, angle = 0.0623 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385534 0.04699645 0.68834931 155.83105768  
0.36996312 -0.81568185 0.44473631 118.60538948  
0.58237507 0.57658862 0.57304872 137.41325286  
Axis 0.36164927 0.29066997 0.88584467  
Axis point 46.91787642 40.85464822 0.00000000  
Rotation angle (degrees) 169.49664722  
Shift along axis 212.55801032  
  
Average map value = 0.3851 for 3543 atoms, 473 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0421, angle = 0.0807 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385419 0.04694873 0.68835377 155.83951830  
0.36917284 -0.81649470 0.44390067 118.64105112  
0.58287779 0.57544088 0.57369092 137.40453299  
Axis 0.36170142 0.29003157 0.88603260  
Axis point 46.92453613 40.91740501 0.00000000  
Rotation angle (degrees) 169.52331757  
Shift along axis 212.52192103  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> select subtract #4

3 models selected  

> select add #4

3543 atoms, 3447 bonds, 6 pseudobonds, 600 residues, 3 models selected  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0274, angle = 0.0252 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72376553 0.04705198 0.68843994 155.83218498  
0.36940136 -0.81625891 0.44414414 118.61647598  
0.58284310 0.57576687 0.57339901 137.40209689  
Axis 0.36175335 0.29022351 0.88594855  
Axis point 46.91644268 40.88980683 0.00000000  
Rotation angle (degrees) 169.51819279  
Shift along axis 212.52929335  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.74758,0.059331,0.66152,107.24,0.37898,-0.77983,0.49823,117.97,0.54543,0.62317,0.5605,171.66

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 48, shift = 1.78, angle = 0.0432 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72386041 0.04692583 0.68834879 155.84758613  
0.36899461 -0.81668142 0.44370534 118.63826603  
0.58298291 0.57517772 0.57384798 137.40226183  
Axis 0.36170795 0.28988352 0.88607839  
Axis point 46.93009405 40.92713221 0.00000000  
Rotation angle (degrees) 169.52897198  
Shift along axis 212.51176302  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> select subtract #4

3 models selected  

> select add #1

2 models selected  

> view matrix models
> #1,0.99928,-0.030775,-0.022245,-38.514,0.032012,0.99783,0.057571,-13.347,0.020425,-0.058241,0.99809,38.65

> ui mousemode right rotate

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 48, shift = 1.62, angle = 0.0293 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72394580 0.04684146 0.68826474 155.82525835  
0.36928022 -0.81639951 0.44398643 118.63615687  
0.58269597 0.57558467 0.57373137 137.41169937  
Axis 0.36162422 0.29009678 0.88604277  
Axis point 46.92124561 40.91182942 0.00000000  
Rotation angle (degrees) 169.51638118  
Shift along axis 212.51879648  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 36, shift = 0.0346, angle = 0.0172 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72412183 0.04670783 0.68808862 155.85394809  
0.36919611 -0.81645662 0.44395136 118.61882116  
0.58253051 0.57551452 0.57396971 137.41557824  
Axis 0.36149990 0.29004507 0.88611042  
Axis point 46.94678973 40.91125445 0.00000000  
Rotation angle (degrees) 169.51556223  
Shift along axis 212.51136742  
  
Average map value = 0.3851 for 3543 atoms, 473 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0215, angle = 0.0382 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72381051 0.04700292 0.68839601 155.83446440  
0.36944121 -0.81622252 0.44417786 118.61608862  
0.58276198 0.57582246 0.57342563 137.40494901  
Axis 0.36171655 0.29024794 0.88595557  
Axis point 46.91960650 40.88900820 0.00000000  
Rotation angle (degrees) 169.51535318  
Shift along axis 212.53066002  
  
Average map value = 0.385 for 3543 atoms, 473 outside contour  

> select subtract #1

Nothing selected  

> ui mousemode right "rotate selected models"

> volume #1 level 0.1051

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.00483, angle = 0.0241 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72379198 0.04700743 0.68841517 155.83872984  
0.36920498 -0.81646473 0.44392907 118.61669929  
0.58293468 0.57547862 0.57359525 137.40093785  
Axis 0.36174583 0.29005901 0.88600549  
Axis point 46.92213949 40.90245846 0.00000000  
Rotation angle (degrees) 169.52386683  
Shift along axis 212.51783799  
  
Average map value = 0.385 for 3543 atoms, 378 outside contour  

> volume #1 level 0.07825

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 28, shift = 0.0258, angle = 0.0215 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72381942 0.04699137 0.68838743 155.83670155  
0.36898077 -0.81667889 0.44372150 118.64157638  
0.58304256 0.57517596 0.57378913 137.40013103  
Axis 0.36174116 0.28989182 0.88606211  
Axis point 46.92253263 40.92629734 0.00000000  
Rotation angle (degrees) 169.53138739  
Shift along axis 212.51082172  
  
Average map value = 0.385 for 3543 atoms, 283 outside contour  

> volume #1 level 0.06414

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0242, angle = 0.0211 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72380572 0.04699044 0.68840189 155.83714820  
0.36877516 -0.81689095 0.44350202 118.61585526  
0.58318964 0.57487482 0.57394144 137.39638457  
Axis 0.36176466 0.28972570 0.88610685  
Axis point 46.92451949 40.92515733 0.00000000  
Rotation angle (degrees) 169.53865131  
Shift along axis 212.49031174  
  
Average map value = 0.385 for 3543 atoms, 231 outside contour  

> volume #1 level 0.05284

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0223, angle = 0.0347 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72385250 0.04694102 0.68835608 155.83990369  
0.36912662 -0.81654638 0.44384404 118.63963729  
0.58290916 0.57536817 0.57373196 137.40423843  
Axis 0.36170531 0.28999020 0.88604455  
Axis point 46.92487494 40.91968628 0.00000000  
Rotation angle (degrees) 169.52472668  
Shift along axis 212.51873000  
  
Average map value = 0.385 for 3543 atoms, 218 outside contour  

> volume #1 level 0.0472

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 28, shift = 0.0476, angle = 0.0657 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72379937 0.04700670 0.68840746 155.82851428  
0.36978429 -0.81588800 0.44450686 118.59732744  
0.58255818 0.57629605 0.57315688 137.40932194  
Axis 0.36170101 0.29050781 0.88587674  
Axis point 46.91480763 40.86146797 0.00000000  
Rotation angle (degrees) 169.50325053  
Shift along axis 212.54450225  
  
Average map value = 0.385 for 3543 atoms, 207 outside contour  

> volume #1 level 0.04296

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1132, overlap = 1860  
steps = 28, shift = 0.0553, angle = 0.0954 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72377490 0.04702481 0.68843195 155.84088380  
0.36881768 -0.81684646 0.44354860 118.64603651  
0.58320099 0.57493522 0.57386939 137.39580604  
Axis 0.36178514 0.28976311 0.88608626  
Axis point 46.92311776 40.93691580 0.00000000  
Rotation angle (degrees) 169.53813724  
Shift along axis 212.50469597  
  
Average map value = 0.385 for 3543 atoms, 193 outside contour  

> volume #1 level 0.04014

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0415, angle = 0.0778 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72376819 0.04705210 0.68843714 155.83058869  
0.36959635 -0.81606445 0.44433921 118.61051263  
0.58271618 0.57604244 0.57325121 137.40466132  
Axis 0.36173818 0.29037488 0.88590514  
Axis point 46.91493969 40.87638492 0.00000000  
Rotation angle (degrees) 169.51126487  
Shift along axis 212.53888266  
  
Average map value = 0.3851 for 3543 atoms, 186 outside contour  

> volume #1 level 0.03732

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 44, shift = 0.0143, angle = 0.0608 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72392890 0.04688310 0.68827968 155.83279058  
0.36900583 -0.81665432 0.44374588 118.62104537  
0.58289076 0.57521968 0.57389953 137.40578800  
Axis 0.36165714 0.28990303 0.88609274  
Axis point 46.92690740 40.91735442 0.00000000  
Rotation angle (degrees) 169.52737001  
Shift along axis 212.50091285  
  
Average map value = 0.385 for 3543 atoms, 177 outside contour  

> fitmap #4 inMap #1 resolution 5 metric correlation

Fit map 2qe3-assembly1.cif map 5 in map
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc using 13679 points  
correlation = 0.7878, correlation about mean = 0.1131, overlap = 1860  
steps = 40, shift = 0.0154, angle = 0.0533 degrees  
  
Position of 2qe3-assembly1.cif map 5 (#3) relative to
cryosparc_P1050_J361_class_00_00022_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.72406102 0.04674153 0.68815031 155.84215557  
0.36953713 -0.81613657 0.44425600 118.61196907  
0.58238985 0.57596555 0.57365995 137.41908850  
Axis 0.36152076 0.29029485 0.88602011  
Axis point 46.93560425 40.88923306 0.00000000  
Rotation angle (degrees) 169.50437629  
Shift along axis 212.52869470  
  
Average map value = 0.3851 for 3543 atoms, 178 outside contour  

> save /Users/mansoore.esmaili/Downloads/lowres1078_fit_to2qe3assambly1cif.cxs

——— End of log from Thu Oct 31 14:41:43 2024 ———

opened ChimeraX session  

> color zone #1 near #4 distance 11.8

> hide #!4 models

> volume #1 step 4

> volume #1 step 1

> hide #!1 models

> close

> open
> /Users/mansoore.esmaili/Desktop/MST1R/LocalResolution_1/cryosparc_P1083_J180_004_volume_map_sharp_full.ccp4

Opened cryosparc_P1083_J180_004_volume_map_sharp_full.ccp4 as #1, grid size
340,340,340, pixel 0.839, shown at level 0.0552, step 2, values float32  

> volume #1 step 1

> open
> /Users/mansoore.esmaili/Desktop/MST1R/LocalResolution_1/cryosparc_P1083_J180_004_volume_map_sharp_local_resolution.ccp4

Opened cryosparc_P1083_J180_004_volume_map_sharp_local_resolution.ccp4 as #2,
grid size 340,340,340, pixel 0.839, shown at level 13.7, step 2, values
float32  

> color sample #1 map #2 palette rainbow

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1 map #2 palette blue-white-red

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1 map #2 palette blue-white-red red

Expected a keyword  

> color sample #1 map #2 palette red-white-blue

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> show #!2 models

> hide #!2 models

> ui tool show "Surface Color"

> color sample #1.1 map #2 palette 3.578,#ff0000:6.127,#ffffff:8.677,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.578,#ff0000:6.127,#ffffff:8.677,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color single #1.1

> color sample #1.1 map #2 palette 3.578,#ff0000:6.127,#ffffff:8.677,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.578,#0000ff:6.127,#ffffff:8.677,#ff0000

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.578,#ff0000:6.127,#ffffff:8.677,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 2,#ff0000:4,#ffffff:6,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.2,#ff0000:4,#ffffff:6,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.6,#ff0000:4,#ffffff:6,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.6,#ff0000:5,#ffffff:6.5,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.6,#ff0000:5.5,#ffffff:7,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.6,#ff0000:5.1,#ffffff:6.4,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> key red-white-blue :3.6 :5.1 :6.4 showTool true

> ui mousemode right "color key"

> ui mousemode right translate

> color sample #1.1 map #2 palette 3.4,#ff0000:5.1,#ffffff:6.4,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> color sample #1.1 map #2 palette 3.5,#ff0000:5,#ffffff:6,#0000ff

Map values for surface "surface": minimum 3.578, mean 4.616, maximum 8.677  

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> ui mousemode right "color key"

> key ticks true

> key red-white-blue :3.5 :5.0 :6.0

> key blue-white-red :6.0 :5.0 :3.5

> key red-white-blue :3.5 :5.0 :6.0

> key blue-white-red :6.0 :5.0 :3.5

> key red-white-blue :3.5 :5.0 :6.0

> key pos 0.723644,0.0960495 size 0.00117861,0.00102201

> key red-white-blue :3.5 :5.0 :6.0 showTool true

[Repeated 1 time(s)]

> ui mousemode right translate

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> ui mousemode right "color key"

> key blue-white-red :6.0 :5.0 :3.5

[Repeated 1 time(s)]

> key pos 0.845467,0.111522 size 0.115017,0.0124312

> undo

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> key delete

> ui mousemode right translate

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> ui mousemode right "color key"

> key pos 0.716741,0.0805916 size 0.147596,0.0236488

> key pos 0.800897,0.0893377 size 0.0461005,0.0412588

> key pos 0.813349,0.113222 size 0,0

> key pos 0.334576,0.274258 size 0.224621,0.0325177

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> ui mousemode right "color key"

> key delete

> ui mousemode right "rotate selected models"

> key red-white-blue :3.5 :5.0 :6.0 showTool true

> ui mousemode right "color key"

> key red-white-blue :3.5 :5.0 :6.0

> key pos 0.451961,0.0612077 size 0.197232,0.0175806

> ui mousemode right "rotate selected models"

> lighting soft

> volume #1 level 0.0652

> volume #1 level 0.0552

> volume #1 level 0.0452

> surface dust #1 size 8.39

> ui mousemode right translate

> save /Users/mansoore.esmaili/Desktop/image1.png supersample 3

> save "/Users/mansoore.esmaili/Desktop/MST1R/LocalResolution_1/session of
> local resolutionmapchanged_Nov152024.cxs"

——— End of log from Fri Nov 15 15:56:37 2024 ———

opened ChimeraX session  

> save "/Users/mansoore.esmaili/Desktop/MST1R/LocalResolution_1/session of
> local resolutionmapchanged_Nov152024final.cxs"

> close session

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J29_class_01_00122_volume_sharp.mrc
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc

Opened cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc as #1.1, grid size
128,128,128, pixel 2.1, shown at level 0.116, step 1, values float32  
Opened cryosparc_P1095_J29_class_01_00122_volume_sharp.mrc as #1.2, grid size
128,128,128, pixel 2.1, shown at level 0.126, step 1, values float32  
Opened cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc as #1.3, grid size
128,128,128, pixel 2.1, shown at level 0.0939, step 1, values float32  

> hide #!1.3 models

> hide #!1.2 models

> hide #!1.1 models

> hide #!1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.2 models

> surface dust #1.2 size 21

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> surface dust #1.1 size 21

> surface dust #1.2 size 21

> show #!1.3 models

> surface dust #1.1 size 21

> surface dust #1.2 size 21

> surface dust #1.3 size 21

> hide #!1 models

> hide #!1.1 models

> hide #!1.2 models

> hide #!1.3 models

> show #!1.3 models

> show #!1.1 models

> ui tool show "Fit in Map"

> fitmap #1.1 inMap #1.3

Fit map cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc in map
cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc using 20945 points  
correlation = 0.6091, correlation about mean = 0.4215, overlap = 1066  
steps = 268, shift = 7.74, angle = 21.5 degrees  
  
Position of cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1)
relative to cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc (#1.3)
coordinates:  
Matrix rotation and translation  
0.94794217 0.30813807 0.08035276 -43.35706275  
-0.28746198 0.93659280 -0.20039842 73.17025434  
-0.13700820 0.16686775 0.97641380 2.29948715  
Axis 0.50124091 0.29665188 -0.81286851  
Axis point 218.01424700 174.45539339 0.00000000  
Rotation angle (degrees) 21.49111546  
Shift along axis -1.89542046  
  

> show #!1.2 models

> fitmap #1.1 inMap #1.3

Fit map cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc in map
cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc using 20945 points  
correlation = 0.6089, correlation about mean = 0.4214, overlap = 1066  
steps = 44, shift = 0.00747, angle = 0.143 degrees  
  
Position of cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1)
relative to cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc (#1.3)
coordinates:  
Matrix rotation and translation  
0.94728630 0.31026459 0.07990339 -43.49251897  
-0.28975596 0.93606423 -0.19956261 73.42496097  
-0.13671191 0.16589045 0.97662184 2.36527477  
Axis 0.49708726 0.29463895 -0.81614468  
Axis point 216.96383790 173.97087520 0.00000000  
Rotation angle (degrees) 21.56733853  
Shift along axis -1.91612983  
  

> fitmap #1.1 inMap #1.3

Fit map cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc in map
cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc using 20945 points  
correlation = 0.6089, correlation about mean = 0.4216, overlap = 1066  
steps = 44, shift = 0.0469, angle = 0.0705 degrees  
  
Position of cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1)
relative to cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc (#1.3)
coordinates:  
Matrix rotation and translation  
0.94693945 0.31139681 0.07960965 -43.55348535  
-0.29093267 0.93571232 -0.19950097 73.58170751  
-0.13661569 0.16575429 0.97665842 2.39189990  
Axis 0.49569018 0.29344075 -0.81742508  
Axis point 216.51418007 173.65007408 0.00000000  
Rotation angle (degrees) 21.61888556  
Shift along axis -1.95236228  
  

> fitmap #1.3 inMap #1.1

Fit map cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc in map
cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc using 20944 points  
correlation = 0.6053, correlation about mean = 0.3987, overlap = 1087  
steps = 188, shift = 0.896, angle = 4.95 degrees  
  
Position of cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc (#1.3)
relative to cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1)
coordinates:  
Matrix rotation and translation  
0.92580688 -0.36482677 -0.09890935 71.06826456  
0.37617848 0.91488696 0.14653192 -59.02985139  
0.03703210 -0.17286783 0.98424862 16.28274385  
Axis -0.39032979 -0.16613036 0.90556245  
Axis point 192.76142759 152.18778253 0.00000000  
Rotation angle (degrees) 24.15087812  
Shift along axis -3.18836892  
  

> hide #!1 models

> hide #!1.1 models

> hide #!1.2 models

> hide #!1.3 models

> show #!1.3 models

> show #!1.1 models

> hide #!1.3 models

> lighting soft

> set bgColor white

> set bgColor #ffffff00

> lighting simple

> set bgColor white

> set bgColor black

> set bgColor transparent

> lighting soft

> lighting full

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J36_007_volume_map_sharp.mrc

Opened cryosparc_P1095_J36_007_volume_map_sharp.mrc as #2, grid size
320,320,320, pixel 0.839, shown at level 0.0422, step 2, values float32  

> surface dust #1.1 size 21

> surface dust #2 size 8.39

> hide #!1 models

> hide #!1.1 models

> show #!1.1 models

> volume #2 step 1

> fitmap #2 inMap #1.1

Fit map cryosparc_P1095_J36_007_volume_map_sharp.mrc in map
cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc using 325119 points  
correlation = 0.7865, correlation about mean = 0.5706, overlap = 1.031e+04  
steps = 212, shift = 6.8, angle = 21.7 degrees  
  
Position of cryosparc_P1095_J36_007_volume_map_sharp.mrc (#2) relative to
cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1) coordinates:  
Matrix rotation and translation  
0.99993494 0.00332905 0.01091049 -1.79078867  
-0.00342647 0.99995432 0.00892305 -0.62197392  
-0.01088029 -0.00895985 0.99990067 2.98358934  
Axis -0.61691851 0.75173094 -0.23304967  
Axis point 271.43176126 0.00000000 169.03901873  
Rotation angle (degrees) 0.83045882  
Shift along axis -0.05811088  
  

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1094_J44_006_volume_map_sharp.mrc.download

Unrecognized file suffix '.download'  

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1094_J44_006_volume_map_sharp.mrc

Opened cryosparc_P1094_J44_006_volume_map_sharp.mrc as #3, grid size
360,360,360, pixel 0.839, shown at level 0.0418, step 2, values float32  

> surface dust #2 size 8.39

> surface dust #3 size 8.39

> show #!1.1 models

> hide #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.3 models

> hide #!2 models

> hide #!1.3 models

> volume #3 step 1

> fitmap #3 inMap #2

Fit map cryosparc_P1094_J44_006_volume_map_sharp.mrc in map
cryosparc_P1095_J36_007_volume_map_sharp.mrc using 460856 points  
correlation = 0.2673, correlation about mean = 0.2032, overlap = 1120  
steps = 228, shift = 25.1, angle = 7.97 degrees  
  
Position of cryosparc_P1094_J44_006_volume_map_sharp.mrc (#3) relative to
cryosparc_P1095_J36_007_volume_map_sharp.mrc (#2) coordinates:  
Matrix rotation and translation  
0.92471582 -0.37722778 -0.05098874 64.12907979  
0.38056815 0.91907885 0.10228372 -78.70270759  
0.00827841 -0.11398806 0.99344763 4.55932460  
Axis -0.27366514 -0.07499524 0.95889682  
Axis point 233.35960298 118.15064098 0.00000000  
Rotation angle (degrees) 23.27467171  
Shift along axis -7.27564320  
  

> show #!2 models

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J38_006_volume_map_sharp.mrc

Opened cryosparc_P1095_J38_006_volume_map_sharp.mrc as #4, grid size
320,320,320, pixel 0.839, shown at level 0.0378, step 2, values float32  

> hide #!2 models

> hide #!1 models

> surface dust #3 size 8.39

> surface dust #4 size 8.39

> hide #!3 models

> volume #4 step 1

> surface dust #4 size 8.39

[Repeated 2 time(s)]

> show #!3 models

> fitmap #3 inMap #4

Fit map cryosparc_P1094_J44_006_volume_map_sharp.mrc in map
cryosparc_P1095_J38_006_volume_map_sharp.mrc using 460856 points  
correlation = 0.3071, correlation about mean = 0.2536, overlap = 1549  
steps = 1208, shift = 14.3, angle = 17.9 degrees  
  
Position of cryosparc_P1094_J44_006_volume_map_sharp.mrc (#3) relative to
cryosparc_P1095_J38_006_volume_map_sharp.mrc (#4) coordinates:  
Matrix rotation and translation  
0.99823740 0.05272337 0.02724573 -28.58189544  
-0.05694083 0.98026836 0.18929260 -46.34936948  
-0.01672798 -0.19051034 0.98154265 24.97367179  
Axis -0.95486304 0.11055436 -0.27570692  
Axis point 0.00000000 127.33160109 267.05403170  
Rotation angle (degrees) 11.47136861  
Shift along axis 15.28225653  
  

> hide #!3 models

> hide #!4 models

> show #!3 models

> show #!4 models

> hide #!3 models

> show #!2 models

> hide #!4 models

> hide #!2 models

> show #!4 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.1 models

> hide #!4 models

> hide #!1.1 models

> show #!1.3 models

> show #!4 models

> hide #!4 models

> vop gaussian #1.3 sdev 6.29

Opened cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc gaussian as #5,
grid size 128,128,128, pixel 2.1, shown at step 1, values float32  

> hide #!5 models

> show #!4 models

> vop gaussian #4 sdev 2.52

Opened cryosparc_P1095_J38_006_volume_map_sharp.mrc gaussian as #6, grid size
320,320,320, pixel 0.839, shown at step 1, values float32  

> show #!5 models

> hide #!5 models

> hide #!6 models

> show #!3 models

> show #!4 models

> hide #!3 models

> ui tool show "Selection Inspector"

> ui mousemode right "map eraser"

> volume erase #4 center 235.98,132.49,118.47 radius 9.697

Opened cryosparc_P1095_J38_006_volume_map_sharp.mrc copy as #8, grid size
320,320,320, pixel 0.839, shown at step 1, values float32  

> surface dust #8 size 8.39

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J42_004_volume_map_sharp.mrc

Opened cryosparc_P1095_J42_004_volume_map_sharp.mrc as #9, grid size
352,352,352, pixel 0.839, shown at level 0.0281, step 2, values float32  

> surface dust #8 size 8.39

> surface dust #9 size 8.39

> volume #9 step 1

> surface dust #8 size 8.39

> surface dust #9 size 8.39

> surface dust #8 size 8.39

> surface dust #9 size 8.39

> fitmap #8 inMap #9

Fit map cryosparc_P1095_J38_006_volume_map_sharp.mrc copy in map
cryosparc_P1095_J42_004_volume_map_sharp.mrc using 327077 points  
correlation = 0.435, correlation about mean = 0.2546, overlap = 1475  
steps = 608, shift = 13.9, angle = 5.33 degrees  
  
Position of cryosparc_P1095_J38_006_volume_map_sharp.mrc copy (#8) relative to
cryosparc_P1095_J42_004_volume_map_sharp.mrc (#9) coordinates:  
Matrix rotation and translation  
0.99686949 0.07879752 0.00649350 -0.48593475  
-0.07838767 0.99571970 -0.04896579 24.98793059  
-0.01032409 0.04830349 0.99877935 -2.85435160  
Axis 0.52404996 0.09060679 -0.84685421  
Axis point 311.03803102 47.96373183 0.00000000  
Rotation angle (degrees) 5.32501712  
Shift along axis 4.42664178  
  

> hide #!8 models

> hide #!9 models

> show #!8 models

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J44_005_volume_map_sharp.mrc

Opened cryosparc_P1095_J44_005_volume_map_sharp.mrc as #10, grid size
300,300,300, pixel 0.839, shown at level 0.0359, step 2, values float32  

> hide #7 models

> surface dust #8 size 8.39

> surface dust #10 size 8.39

> volume #10 step 1

> hide #!8 models

> volume #10 level 0.02595

> surface dust #10 size 8.39

[Repeated 1 time(s)]

> volume #10 level 0.02927

> volume #10 level 0.03425

> ui mousemode right "rotate selected models"

> show #!8 models

> hide #!10 models

> surface dust #8 size 8.39

[Repeated 1 time(s)]

> volume #8 level 0.04793

> show #!10 models

> fitmap #10 inMap #8

Fit map cryosparc_P1095_J44_005_volume_map_sharp.mrc in map
cryosparc_P1095_J38_006_volume_map_sharp.mrc copy using 286936 points  
correlation = 0.4795, correlation about mean = 0.2733, overlap = 1874  
steps = 496, shift = 24.9, angle = 6.98 degrees  
  
Position of cryosparc_P1095_J44_005_volume_map_sharp.mrc (#10) relative to
cryosparc_P1095_J38_006_volume_map_sharp.mrc copy (#8) coordinates:  
Matrix rotation and translation  
0.99992533 0.01218826 -0.00088190 6.94857613  
-0.01221019 0.99941692 -0.03188625 11.54537924  
0.00049275 0.03189464 0.99949112 0.14066361  
Axis 0.93380580 -0.02012594 -0.35721377  
Axis point 0.00000000 -68.05697506 367.24175928  
Rotation angle (degrees) 1.95709149  
Shift along axis 6.20601211  
  

> volume #10 level 0.03923

> hide #!8 models

> volume #10 level 0.03923

> show #!8 models

> hide #!8 models

> show #!3 models

> hide #!10 models

> show #!10 models

> hide #!3 models

> volume #10 level 0.03425

> show #!8 models

> hide #!10 models

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J63_class_00_00162_volume_sharp.mrc

Opened cryosparc_P1095_J63_class_00_00162_volume_sharp.mrc as #7, grid size
128,128,128, pixel 2.1, shown at level 0.0875, step 1, values float32  

> hide #!8 models

> show #!8 models

> volume #7 level 0.08452

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J63_class_02_00162_volume_sharp.mrc

Opened cryosparc_P1095_J63_class_02_00162_volume_sharp.mrc as #11, grid size
128,128,128, pixel 2.1, shown at level 0.0796, step 1, values float32  

> volume #11 level 0.05293

> surface dust #8 size 8.39

> surface dust #11 size 21

> fitmap #8 inMap #11

Fit map cryosparc_P1095_J38_006_volume_map_sharp.mrc copy in map
cryosparc_P1095_J63_class_02_00162_volume_sharp.mrc using 220153 points  
correlation = 0.7971, correlation about mean = 0.5356, overlap = 8708  
steps = 116, shift = 14, angle = 6 degrees  
  
Position of cryosparc_P1095_J38_006_volume_map_sharp.mrc copy (#8) relative to
cryosparc_P1095_J63_class_02_00162_volume_sharp.mrc (#11) coordinates:  
Matrix rotation and translation  
0.99974707 -0.01622099 0.01557773 0.14303202  
0.01630163 0.99985430 -0.00506346 -1.58396306  
-0.01549333 0.00531612 0.99986584 0.98910754  
Axis 0.22485467 0.67309722 0.70454277  
Axis point 83.35469256 12.19130310 0.00000000  
Rotation angle (degrees) 1.32254176  
Shift along axis -0.33713116  
  

> volume #11 level 0.05145

> hide #!8 models

> vop gaussian #11 sdev 6.29

Opened cryosparc_P1095_J63_class_02_00162_volume_sharp.mrc gaussian as #12,
grid size 128,128,128, pixel 2.1, shown at step 1, values float32  

> open
> /Users/mansoore.esmaili/Downloads/20241121T1647581100_model_1_ptm_relaxed.pdb

Summary of feedback from opening
/Users/mansoore.esmaili/Downloads/20241121T1647581100_model_1_ptm_relaxed.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK no_recycling=3, max_templates=4, config_preset=model_1_ptm  
  
Ignored bad PDB record found on line 2  
PARENT 6y41_H 4zfg_A 6y41_F 1m1j_F  
  
Chain information for 20241121T1647581100_model_1_ptm_relaxed.pdb #13  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #!12 models

> hide #!11 models

> hide #13 models

> show #13 models

> hide #!12 models

> show #!12 models

> hide #13 models

> show #13 models

> hide #!12 models

> hide #13 models

> show #13 models

> hide #13 models

> open
> /Users/mansoore.esmaili/Downloads/20241121T1647581100_model_1_ptm_output_dict.pkl

Unrecognized file suffix '.pkl'  

> open
> /Users/mansoore.esmaili/Downloads/20241121T1647581100_model_1_ptm_unrelaxed.pdb

Summary of feedback from opening
/Users/mansoore.esmaili/Downloads/20241121T1647581100_model_1_ptm_unrelaxed.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK no_recycling=3, max_templates=4, config_preset=model_1_ptm  
  
Ignored bad PDB record found on line 2  
PARENT 6y41_H 4zfg_A 6y41_F 1m1j_F  
  
Chain information for 20241121T1647581100_model_1_ptm_unrelaxed.pdb #14  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> show #13 models

> hide #14 models

> show #14 models

> color #14 #cfbb6bff

> color #14 #cfc95aff

> hide #13 models

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right translate

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J77_008_volume_map_sharp.mrc.download

Unrecognized file suffix '.download'  

> open
> /Users/mansoore.esmaili/Downloads/cryosparc_P1095_J77_008_volume_map_sharp.mrc

Opened cryosparc_P1095_J77_008_volume_map_sharp.mrc as #15, grid size
320,320,320, pixel 0.839, shown at level 0.0502, step 2, values float32  

> surface dust #15 size 8.39

> volume #15 step 1

> ui mousemode right "rotate selected models"

> hide #14 models

> volume #15 level 0.05787

> show #!1.1 models

> fitmap #1.1 inMap #15

Fit map cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc in map
cryosparc_P1095_J77_008_volume_map_sharp.mrc using 20945 points  
correlation = 0.2248, correlation about mean = 0.1403, overlap = 266.4  
steps = 2000, shift = 1.24, angle = 5.32 degrees  
  
Position of cryosparc_P1095_J29_class_00_00122_volume_sharp.mrc (#1.1)
relative to cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.92257778 0.38333735 0.04362003 -44.68772200  
-0.37170461 0.91343912 -0.16572467 83.00974723  
-0.10337270 0.13668013 0.98520690 -0.19394289  
Axis 0.36587488 0.17784423 -0.91351355  
Axis point 188.30567627 153.26142751 0.00000000  
Rotation angle (degrees) 24.40995140  
Shift along axis -1.41014074  
  

> show #!1.2 models

> show #!1.3 models

> hide #!1.1 models

> hide #!1.2 models

> fitmap #1.3 inMap #15

Fit map cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc in map
cryosparc_P1095_J77_008_volume_map_sharp.mrc using 20944 points  
correlation = 0.4366, correlation about mean = 0.2939, overlap = 564.3  
steps = 160, shift = 1.66, angle = 7.46 degrees  
  
Position of cryosparc_P1095_J29_class_02_00122_volume_sharp.mrc (#1.3)
relative to cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.99879795 0.04897840 -0.00194436 -5.92915678  
-0.04899020 0.99877763 -0.00657372 7.77242821  
0.00162001 0.00666107 0.99997650 -1.55713807  
Axis 0.13378918 -0.03603188 -0.99035456  
Axis point 155.84960556 126.16210682 0.00000000  
Rotation angle (degrees) 2.83508474  
Shift along axis 0.46880651  
  

> volume #15 level 0.05034

> open /Users/mansoore.esmaili/Downloads/ranked_4.pdb

Chain information for ranked_4.pdb #16  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #!15 models

> hide #16 models

> show #16 models

> show #!15 models

> hide #16 models

> open
> /Users/mansoore.esmaili/Downloads/relaxed_model_1_multimer_v3_pred_0.pdb

Chain information for relaxed_model_1_multimer_v3_pred_0.pdb #17  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Computing secondary structure  

> open /Users/mansoore.esmaili/Downloads/ranked_4.pdb

Chain information for ranked_4.pdb #18  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #17 models

> open /Users/mansoore.esmaili/Downloads/ranked_4-2.pdb

Chain information for ranked_4-2.pdb #19  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Computing secondary structure  

> hide #18 models

> hide #!1.3 models

> hide #!1 models

> ui mousemode right "translate selected models"

> hide #!15 models

> show #!15 models

> hide #!15 models

> show #!15 models

> select add #19

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> view matrix models #19,1,0,0,103.7,0,1,0,22.632,0,0,1,-18.003

> view matrix models #19,1,0,0,105.35,0,1,0,18.589,0,0,1,-14.468

> view matrix models #19,1,0,0,207.33,0,1,0,94.282,0,0,1,79.196

> view matrix models #19,1,0,0,191.09,0,1,0,166.37,0,0,1,137.98

> view matrix models #19,1,0,0,65.855,0,1,0,119.35,0,0,1,201.7

> volume #15 level 0.08798

> view matrix models #19,1,0,0,97.127,0,1,0,123.97,0,0,1,149.76

> view matrix models #19,1,0,0,111.09,0,1,0,142.7,0,0,1,146.08

> view matrix models #19,1,0,0,107.73,0,1,0,125.9,0,0,1,171.39

> view matrix models #19,1,0,0,106.2,0,1,0,130.33,0,0,1,181.52

> view matrix models #19,1,0,0,121.13,0,1,0,116.98,0,0,1,163.3

> view matrix models #19,1,0,0,133.46,0,1,0,115.63,0,0,1,175.89

> view matrix models #19,1,0,0,140.6,0,1,0,125.33,0,0,1,177.31

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06643, steps = 76  
shifted from previous position = 3.57  
rotated from previous position = 6.52 degrees  
atoms outside contour = 2335, contour level = 0.087976  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.99363287 0.04131301 -0.10481868 137.81599882  
-0.03988724 0.99908142 0.01566306 127.53365025  
0.10536948 -0.01138240 0.99436800 177.60224373  
Axis -0.11917193 -0.92616372 -0.35779716  
Axis point -951.55972842 0.00000000 1147.39435937  
Rotation angle (degrees) 6.51552707  
Shift along axis -198.08641798  
  

> view matrix models
> #19,0.99363,0.041313,-0.10482,136.01,-0.039887,0.99908,0.015663,123.98,0.10537,-0.011382,0.99437,175.4

> view matrix models
> #19,0.99363,0.041313,-0.10482,110.2,-0.039887,0.99908,0.015663,104.78,0.10537,-0.011382,0.99437,202.62

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.89791,-0.11134,-0.42586,107.92,-0.24606,0.92916,0.27589,102.73,0.36498,0.35251,-0.8617,214.52

> view matrix models
> #19,0.21467,0.35381,-0.91035,113.84,-0.034882,0.93426,0.35487,102.71,0.97606,-0.044427,0.2129,208.83

> view matrix models
> #19,0.70742,0.70407,-0.062037,110.61,-0.63529,0.67186,0.3808,100.85,0.30979,-0.22998,0.92257,203.04

> view matrix models
> #19,-0.62582,0.20126,0.75356,102.27,-0.35785,0.78437,-0.50667,106.74,-0.69304,-0.58674,-0.41885,208.06

> view matrix models
> #19,-0.73177,0.27362,0.62421,102.93,-0.22086,0.77125,-0.59699,107.51,-0.64477,-0.57473,-0.50395,208.67

> view matrix models
> #19,-0.58664,-0.0090964,0.8098,101.63,-0.02598,0.99963,-0.0075915,104.94,-0.80943,-0.025492,-0.58666,209.84

> view matrix models
> #19,-0.58017,-0.029012,0.81398,101.58,-0.011036,0.99955,0.027761,104.77,-0.81442,0.0071232,-0.58023,209.86

> view matrix models
> #19,-0.58154,-0.024699,0.81314,101.59,-0.014282,0.99969,0.020151,104.8,-0.81339,0.00010594,-0.58172,209.85

> view matrix models
> #19,-0.57848,-0.034405,0.81497,101.57,-0.0069704,0.99928,0.037238,104.72,-0.81567,0.015861,-0.5783,209.86

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.57848,-0.034405,0.81497,129.59,-0.0069704,0.99928,0.037238,135.81,-0.81567,0.015861,-0.5783,175.6

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06552, steps = 136  
shifted from previous position = 8.3  
rotated from previous position = 21.9 degrees  
atoms outside contour = 2309, contour level = 0.087976  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.41976791 0.29330462 0.85893382 136.35629208  
0.06988239 0.95398148 -0.29160896 130.99227555  
-0.90493721 -0.06238374 -0.42094764 176.14781976  
Axis 0.12786732 0.98392949 -0.12463027  
Axis point 120.14579464 -0.00000000 58.35795793  
Rotation angle (degrees) 116.31890924  
Shift along axis 124.36932547  
  

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06551, steps = 48  
shifted from previous position = 0.0094  
rotated from previous position = 0.0377 degrees  
atoms outside contour = 2308, contour level = 0.087976  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.42022179 0.29332745 0.85870406 136.35784216  
0.07028412 0.95399077 -0.29148198 130.98293681  
-0.90469541 -0.06213382 -0.42150397 176.14690682  
Axis 0.12797126 0.98393838 -0.12445330  
Axis point 120.09636502 0.00000000 58.37418315  
Rotation angle (degrees) 116.35090401  
Shift along axis 124.40695945  
  

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06552, steps = 48  
shifted from previous position = 0.008  
rotated from previous position = 0.0239 degrees  
atoms outside contour = 2313, contour level = 0.087976  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.41988745 0.29324576 0.85889548 136.35708608  
0.07011445 0.95401464 -0.29144474 130.99067506  
-0.90486380 -0.06215301 -0.42113953 176.14897137  
Axis 0.12791424 0.98394272 -0.12447755  
Axis point 120.12768212 0.00000000 58.35818865  
Rotation angle (degrees) 116.32780371  
Shift along axis 124.40274310  
  

> volume #15 level 0.1745

> view matrix models
> #19,-0.41989,0.29325,0.8589,138.91,0.070114,0.95401,-0.29144,87.635,-0.90486,-0.062153,-0.42114,166.01

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.35891,0.15836,-0.91984,149.02,0.50556,0.8614,-0.048968,86.95,0.7846,-0.48261,-0.38923,168.47

> select subtract #19

Nothing selected  

> select add #15

2 models selected  

> view matrix models
> #15,0.93406,-0.22004,-0.28127,81.511,0.2578,0.96051,0.10472,-44.283,0.24712,-0.17033,0.9539,-2.0483

> view matrix models
> #15,0.98114,-0.16247,-0.10471,41.281,0.18282,0.95591,0.22983,-51.522,0.062748,-0.24464,0.96758,31.739

> view matrix models
> #15,0.96315,-0.10688,-0.24683,56.155,0.16724,0.95667,0.23834,-50.753,0.21067,-0.27084,0.93929,19.603

> view matrix models
> #15,0.94945,-0.24505,-0.19618,70.779,0.29072,0.92217,0.2551,-64.877,0.1184,-0.29924,0.9468,35.139

> select subtract #15

Nothing selected  

> select add #19

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> view matrix models
> #19,0.93708,-0.25105,0.2426,144.19,0.16065,0.92704,0.3388,84.139,-0.30996,-0.27851,0.90904,159.15

> view matrix models
> #19,-0.49077,0.86755,0.080656,144.32,-0.82567,-0.49264,0.27491,79.843,0.27823,0.068324,0.95808,160.71

> view matrix models
> #19,-0.95913,0.27688,-0.058396,143.06,-0.27695,-0.96086,-0.0071165,81.703,-0.058081,0.009347,0.99827,159.69

> view matrix models
> #19,-0.6785,-0.014357,0.73446,138.52,-0.13025,-0.98162,-0.13952,82.725,0.72296,-0.19033,0.66416,162.82

> view matrix models
> #19,-0.42328,-0.1566,0.89236,137.86,-0.1266,-0.96506,-0.22941,83.281,0.89711,-0.21008,0.38866,164.73

> select add #15

3495 atoms, 3537 bonds, 233 residues, 3 models selected  

> select subtract #19

2 models selected  

> view matrix models
> #15,0.94989,-0.032049,-0.31093,56.328,0.15811,0.90736,0.38948,-64.168,0.26965,-0.41913,0.86696,43.611

> view matrix models
> #15,0.28454,0.86131,-0.42094,32.456,-0.8013,0.45472,0.38878,131.62,0.52627,0.22667,0.81955,-78.149

> view matrix models
> #15,-0.60846,0.54492,-0.57692,221.86,-0.78099,-0.28217,0.55716,211.66,0.14082,0.78958,0.59727,-75.685

> view matrix models
> #15,-0.9426,0.29276,0.16062,197.28,-0.17461,-0.84211,0.51025,217.71,0.28464,0.45292,0.84489,-81.975

> view matrix models
> #15,-0.79385,-0.59199,0.13908,308.84,0.60424,-0.79366,0.070688,168.67,0.068536,0.14015,0.98775,-27.881

> view matrix models
> #15,-0.24846,-0.96808,-0.032904,314.48,0.93747,-0.23177,-0.25968,89.58,0.24377,-0.095367,0.96513,-14.112

> view matrix models
> #15,-0.28162,-0.90434,0.32071,258.66,0.9138,-0.35472,-0.19784,101.73,0.29268,0.23735,0.92628,-63.483

> view matrix models
> #15,0.63614,-0.73262,-0.24205,190.68,0.45983,0.61189,-0.64354,87.048,0.61959,0.29808,0.72613,-87.676

> view matrix models
> #15,0.8638,-0.46839,-0.18562,113.31,0.22195,0.6845,-0.69441,116.05,0.45231,0.55864,0.69523,-98.436

> view matrix models
> #15,0.90168,-0.40137,-0.16084,94.864,0.18714,0.69759,-0.69163,118.46,0.3898,0.59353,0.70411,-96.326

> select subtract #15

Nothing selected  

> select add #19

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> view matrix models
> #19,-0.22734,-0.099063,0.96876,137.93,-0.098921,-0.98732,-0.12417,82.689,0.96878,-0.12406,0.21465,166.04

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.22734,-0.099063,0.96876,139.23,-0.098921,-0.98732,-0.12417,66.778,0.96878,-0.12406,0.21465,161.43

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.86803,-0.087693,0.4887,144.24,-0.15732,-0.98214,0.1032,65.36,0.47093,-0.16647,-0.86632,166.57

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.86803,-0.087693,0.4887,146.53,-0.15732,-0.98214,0.1032,116,0.47093,-0.16647,-0.86632,165.79

> view matrix models
> #19,0.86803,-0.087693,0.4887,145.14,-0.15732,-0.98214,0.1032,109.54,0.47093,-0.16647,-0.86632,162

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.05938, steps = 116  
shifted from previous position = 2.57  
rotated from previous position = 8.66 degrees  
atoms outside contour = 2965, contour level = 0.17454  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96104033 -0.20094003 0.18980143 142.58068341  
-0.05358713 -0.80908903 -0.58523786 126.95846747  
0.27116397 0.55226628 -0.78833499 178.14670225  
Axis 0.98922813 -0.07075677 0.12814515  
Axis point 0.00000000 43.27750343 101.88190147  
Rotation angle (degrees) 144.90419798  
Shift along axis 154.89028809  
  

> view matrix models
> #19,0.84445,0.054728,0.53284,139.29,-0.045076,-0.98398,0.1725,115.47,0.53374,-0.16969,-0.82845,165.54

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06123, steps = 116  
shifted from previous position = 1.73  
rotated from previous position = 7.76 degrees  
atoms outside contour = 2991, contour level = 0.17454  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96999882 -0.20181047 0.13555374 139.89934227  
-0.11197025 -0.86578488 -0.48772861 135.53299132  
0.21578912 0.45791819 -0.86240709 179.71130357  
Axis 0.99198501 -0.08416704 0.09424253  
Axis point 0.00000000 52.46373809 102.09128818  
Rotation angle (degrees) 151.53357510  
Shift along axis 144.30708721  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.58739,0.29655,0.75301,135.78,0.041228,-0.9402,0.33811,114.77,0.80825,-0.16756,-0.56449,164.47

> volume #15 level 0.06163

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.05898, steps = 88  
shifted from previous position = 1.14  
rotated from previous position = 5.55 degrees  
atoms outside contour = 2110, contour level = 0.06163  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.89831881 0.02953825 0.43835010 137.72979763  
0.22916514 -0.88275837 -0.41014754 135.60407165  
0.37484218 0.46889781 -0.79976758 180.72614387  
Axis 0.97275909 0.07027841 0.22090882  
Axis point 0.00000000 45.61771762 89.78629158  
Rotation angle (degrees) 153.13878258  
Shift along axis 183.43194910  
  

> view matrix models
> #19,0.685,0.27685,0.67389,135.64,0.029919,-0.9349,0.35366,113.72,0.72793,-0.22209,-0.64869,165.05

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.685,0.27685,0.67389,131.88,0.029919,-0.9349,0.35366,107.91,0.72793,-0.22209,-0.64869,163.38

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06106, steps = 116  
shifted from previous position = 6.87  
rotated from previous position = 14.8 degrees  
atoms outside contour = 2047, contour level = 0.06163  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96747666 -0.13027897 0.21683242 137.89048963  
-0.03378844 -0.91605320 -0.39963091 130.11812608  
0.25069353 0.37930716 -0.89066202 180.23266024  
Axis 0.99149251 -0.04310104 0.12282059  
Axis point 0.00000000 51.39974031 95.68460772  
Rotation angle (degrees) 156.87048666  
Shift along axis 153.24544283  
  

> view matrix models
> #19,0.8456,0.18919,0.49917,135.14,-0.015902,-0.92575,0.37781,109.38,0.53358,-0.32741,-0.7798,165.97

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0589, steps = 60  
shifted from previous position = 0.856  
rotated from previous position = 6.4 degrees  
atoms outside contour = 2129, contour level = 0.06163  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.97664487 -0.05582514 0.20748096 137.10942791  
0.01168804 -0.95042318 -0.31073969 133.56333843  
0.21454180 0.30590737 -0.92757344 183.76348542  
Axis 0.99399555 -0.01138162 0.10882692  
Axis point 0.00000000 54.21503982 95.20038403  
Rotation angle (degrees) 161.92955838  
Shift along axis 154.76440790  
  

> view matrix models
> #19,0.84143,0.28193,0.461,137.61,0.042541,-0.88502,0.4636,111.68,0.5387,-0.37047,-0.75668,162.17

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06379, steps = 92  
shifted from previous position = 1.97  
rotated from previous position = 8.53 degrees  
atoms outside contour = 2029, contour level = 0.06163  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.99381823 -0.00263232 0.11098822 139.94892720  
0.02119994 -0.97682277 -0.21299729 132.05531301  
0.10897649 0.21403353 -0.97072847 179.88226429  
Axis 0.99843525 0.00470358 0.05572188  
Axis point 0.00000000 56.40718894 93.15141532  
Rotation angle (degrees) 167.65193016  
Shift along axis 150.37445364  
  

> view matrix models
> #19,0.87007,0.35526,0.3417,131.5,0.1254,-0.82994,0.54357,72.707,0.4767,-0.4301,-0.76666,177.22

> view matrix models
> #19,0.87007,0.35526,0.3417,131.83,0.1254,-0.82994,0.54357,71.304,0.4767,-0.4301,-0.76666,176.32

> volume #15 level 0.09174

> volume #15 step 4

> volume #15 step 2

> view matrix models
> #19,0.87007,0.35526,0.3417,131.23,0.1254,-0.82994,0.54357,72.803,0.4767,-0.4301,-0.76666,177.65

> select add #15

3495 atoms, 3537 bonds, 233 residues, 3 models selected  

> select subtract #19

2 models selected  

> view matrix models
> #15,0.90168,-0.40137,-0.16084,95.746,0.18714,0.69759,-0.69163,114.99,0.3898,0.59353,0.70411,-98.316

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #15,-0.62785,0.57216,-0.52767,212.78,-0.51806,-0.81316,-0.26531,373.99,-0.58088,0.10679,0.80695,91.535

> select add #19

3495 atoms, 3537 bonds, 233 residues, 3 models selected  

> select subtract #15

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> view matrix models
> #19,0.93048,0.22796,0.28676,131.44,0.024736,-0.82011,0.57167,72.455,0.36549,-0.52484,-0.76874,177.26

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.93048,0.22796,0.28676,147.42,0.024736,-0.82011,0.57167,107.23,0.36549,-0.52484,-0.76874,142.54

> view matrix models
> #19,0.93048,0.22796,0.28676,144.18,0.024736,-0.82011,0.57167,99.546,0.36549,-0.52484,-0.76874,149.55

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.0024151,0.28942,0.9572,138.54,-0.80331,-0.57064,0.17051,100.64,0.59556,-0.76851,0.23387,143.79

> view matrix models
> #19,-0.81115,0.57966,0.077685,142.51,-0.54966,-0.71022,-0.43983,104.41,-0.19978,-0.39947,0.89471,139.06

> view matrix models
> #19,0.49046,0.2443,-0.83652,149.79,-0.35548,-0.82033,-0.44799,104.64,-0.79566,0.51709,-0.3155,146.54

> view matrix models
> #19,-0.88973,-0.43163,0.1486,140.04,-0.31592,0.81719,0.48208,102.44,-0.32951,0.38197,-0.86343,150.39

> view matrix models
> #19,-0.54722,-0.5042,0.66808,137.61,-0.3292,0.86352,0.38205,103.07,-0.76953,-0.010867,-0.63852,147.46

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.54722,-0.5042,0.66808,128.87,-0.3292,0.86352,0.38205,87.958,-0.76953,-0.010867,-0.63852,166.51

> view matrix models
> #19,-0.54722,-0.5042,0.66808,126.54,-0.3292,0.86352,0.38205,89.685,-0.76953,-0.010867,-0.63852,171.66

> ui mousemode right rotate

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.32491,-0.096668,0.94079,126.19,0.12136,0.98228,0.14284,92.2,-0.93792,0.16059,-0.30742,169.73

> view matrix models
> #19,-0.36346,-0.099882,0.92624,126.19,0.11193,0.98235,0.14986,92.14,-0.92486,0.15815,-0.34587,169.97

> view matrix models
> #19,-0.55876,-0.16857,0.81202,126.32,0.0088716,0.97785,0.20911,91.581,-0.82928,0.12404,-0.54489,171.25

> view matrix models
> #19,-0.80873,-0.09834,0.5799,127.28,0.047215,0.97189,0.23066,91.524,-0.58628,0.21392,-0.78135,173.27

> view matrix models
> #19,-0.99636,-0.014248,-0.084056,130.88,-0.026992,0.98794,0.15248,91.854,0.08087,0.15419,-0.98473,175.69

> view matrix models
> #19,-0.99782,-0.024519,-0.061308,130.73,-0.033254,0.98876,0.14579,91.881,0.057045,0.14751,-0.98741,175.64

> view matrix models
> #19,-0.89626,0.011779,0.44338,128.1,0.10042,0.97908,0.17698,91.955,-0.43202,0.20314,-0.87869,174.13

> view matrix models
> #19,-0.35352,-0.16762,0.92029,126.12,-0.011726,0.98453,0.17481,91.75,-0.93536,0.051008,-0.35001,169.78

> view matrix models
> #19,-0.23866,-0.32129,0.91641,126.08,-0.27763,0.92687,0.25265,90.653,-0.93057,-0.19413,-0.31041,169.1

> view matrix models
> #19,-0.29279,-0.15948,0.94278,126.13,-0.14122,0.98239,0.12232,91.785,-0.94569,-0.097325,-0.31016,169.25

> ui mousemode right "move picked models"

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.29279,-0.15948,0.94278,122.78,-0.14122,0.98239,0.12232,145.38,-0.94569,-0.097325,-0.31016,179.07

> view matrix models
> #19,-0.29279,-0.15948,0.94278,117.85,-0.14122,0.98239,0.12232,152.87,-0.94569,-0.097325,-0.31016,181.99

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.033188,-0.33531,0.94152,118.19,-0.32261,0.88802,0.32763,151.14,-0.94595,-0.31462,-0.078702,180.25

> view matrix models
> #19,-0.088423,-0.38961,0.91672,117.98,-0.35704,0.87157,0.33598,150.99,-0.92989,-0.2976,-0.21618,181.11

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.088423,-0.38961,0.91672,118.34,-0.35704,0.87157,0.33598,153.04,-0.92989,-0.2976,-0.21618,180.09

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0747, steps = 184  
shifted from previous position = 13.3  
rotated from previous position = 17 degrees  
atoms outside contour = 2290, contour level = 0.09174  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70849005 -0.30468801 -0.63655876 134.64119771  
-0.11344666 -0.93943893 0.32339504 130.24939742  
-0.69654267 -0.15690670 -0.70014898 180.30393550  
Axis -0.92287069 0.11525545 0.36745866  
Axis point 0.00000000 87.59816517 107.25902679  
Rotation angle (degrees) 164.91678965  
Shift along axis -42.99021975  
  

> view matrix models
> #19,-0.14219,-0.26342,0.95414,109.67,-0.089988,0.96339,0.25256,151.11,-0.98574,-0.04995,-0.16069,170.25

> volume #15 step 8

> view matrix models
> #19,-0.14219,-0.26342,0.95414,110.05,-0.089988,0.96339,0.25256,152.78,-0.98574,-0.04995,-0.16069,169.6

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.0436,-0.21573,0.97548,110.39,-0.13784,0.96577,0.21974,152.88,-0.98949,-0.14404,0.012372,168.42

> view matrix models
> #19,0.079816,-0.12434,0.98902,110.56,-0.063107,0.98957,0.1295,153.59,-0.99481,-0.072751,0.071136,168.2

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.079816,-0.12434,0.98902,109.36,-0.063107,0.98957,0.1295,152.62,-0.99481,-0.072751,0.071136,169.73

> volume #15 step 4

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07613, steps = 128  
shifted from previous position = 3.05  
rotated from previous position = 13.1 degrees  
atoms outside contour = 2287, contour level = 0.09174  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70458283 -0.43337355 -0.56191672 132.01518685  
-0.10641338 -0.84742619 0.52013945 130.83167996  
-0.70159762 -0.30668586 -0.64319869 174.90380772  
Axis -0.91866428 0.15519585 0.36327701  
Axis point 0.00000000 100.95641892 95.87460191  
Rotation angle (degrees) 153.25535729  
Shift along axis -37.43457093  
  

> volume #15 step 2

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07613, steps = 48  
shifted from previous position = 0.0206  
rotated from previous position = 0.0474 degrees  
atoms outside contour = 2292, contour level = 0.09174  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70502177 -0.43345142 -0.56130576 132.00642406  
-0.10688490 -0.84738249 0.52011397 130.81984848  
-0.70108481 -0.30669656 -0.64375252 174.88937950  
Axis -0.91879207 0.15532928 0.36289661  
Axis point 0.00000000 100.94946065 95.83984282  
Rotation angle (degrees) 153.25988901  
Shift along axis -37.49954066  
  

> volume #15 step 1

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07613, steps = 44  
shifted from previous position = 0.00884  
rotated from previous position = 0.0332 degrees  
atoms outside contour = 2215, contour level = 0.09174  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70502523 -0.43361857 -0.56117231 132.00848777  
-0.10741041 -0.84745596 0.51988595 130.82811476  
-0.70100102 -0.30625696 -0.64405298 174.88677925  
Axis -0.91880136 0.15551160 0.36279499  
Axis point 0.00000000 100.94320708 95.84585728  
Rotation angle (degrees) 153.28348719  
Shift along axis -37.49624152  
  

> volume #15 level 0.06916

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07612, steps = 44  
shifted from previous position = 0.0207  
rotated from previous position = 0.0815 degrees  
atoms outside contour = 1993, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70447810 -0.43332045 -0.56208895 132.01781762  
-0.10631210 -0.84747342 0.52008320 130.83476713  
-0.70171813 -0.30663036 -0.64309368 174.90399315  
Axis -0.91863523 0.15515445 0.36336816  
Axis point 0.00000000 100.95338460 95.88413237  
Rotation angle (degrees) 153.25834639  
Shift along axis -37.42207941  
  

> view matrix models
> #19,-0.13286,-0.051033,0.98982,110.56,-0.092338,0.99497,0.038905,154.52,-0.98682,-0.08623,-0.1369,171.96

> view matrix models
> #19,-0.13286,-0.051033,0.98982,112.37,-0.092338,0.99497,0.038905,152.82,-0.98682,-0.08623,-0.1369,169.74

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07614, steps = 56  
shifted from previous position = 0.232  
rotated from previous position = 0.087 degrees  
atoms outside contour = 1998, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.70517041 -0.43348409 -0.56109378 132.00627217  
-0.10735399 -0.84749712 0.51983051 130.82636648  
-0.70086362 -0.30633344 -0.64416613 174.88537519  
Axis -0.91884329 0.15544927 0.36271549  
Axis point 0.00000000 100.93616372 95.83902192  
Rotation angle (degrees) 153.28406903  
Shift along axis -37.52258038  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.045164,-0.10735,0.9932,112.71,-0.25978,0.95874,0.11544,151.97,-0.96461,-0.26323,0.015413,168.78

> view matrix models
> #19,-0.30213,-0.1389,0.94309,112.24,-0.14772,0.9842,0.097634,152.35,-0.94175,-0.10981,-0.31788,171.03

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.30213,-0.1389,0.94309,107.73,-0.14772,0.9842,0.097634,151.86,-0.94175,-0.10981,-0.31788,173.47

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07755, steps = 152  
shifted from previous position = 2.66  
rotated from previous position = 12.2 degrees  
atoms outside contour = 1979, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.71028791 -0.53276812 -0.46005348 134.72845017  
-0.32532625 -0.82803782 0.45663574 131.30850464  
-0.62422264 -0.17467537 -0.76146871 179.33852331  
Axis -0.92229810 0.23983882 0.30305700  
Axis point 0.00000000 101.44105946 98.36214790  
Rotation angle (degrees) 159.98604860  
Shift along axis -38.41712211  
  

> view matrix models
> #19,-0.30271,-0.047103,0.95192,109.09,0.062185,0.99567,0.069043,148.19,-0.95105,0.080095,-0.29847,171.63

> view matrix models
> #19,-0.30271,-0.047103,0.95192,109.53,0.062185,0.99567,0.069043,151.8,-0.95105,0.080095,-0.29847,171.75

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07756, steps = 144  
shifted from previous position = 2.14  
rotated from previous position = 0.00555 degrees  
atoms outside contour = 1977, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.71022153 -0.53281148 -0.46010576 134.73118570  
-0.32533840 -0.82801663 0.45666550 131.30036123  
-0.62429184 -0.17464360 -0.76141927 179.34027698  
Axis -0.92227946 0.23985945 0.30309741  
Axis point 0.00000000 101.43997397 98.36725677  
Rotation angle (degrees) 159.98569306  
Shift along axis -38.40859882  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.23924,0.15835,0.95796,109.16,0.47624,0.87892,-0.026355,151.01,-0.84615,0.44991,-0.28568,172.85

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07737, steps = 76  
shifted from previous position = 2.25  
rotated from previous position = 4.41 degrees  
atoms outside contour = 2022, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.44978868 -0.77765383 -0.43925467 133.03369344  
-0.60943984 -0.62675644 0.48555066 132.01767497  
-0.65289602 0.04930410 -0.75584118 177.63935846  
Axis -0.84864258 0.41560247 0.32723135  
Axis point 0.00000000 112.26149132 104.30456364  
Rotation angle (degrees) 165.10632650  
Shift along axis 0.09798202  
  

> view matrix models
> #19,-0.28945,-0.17724,0.94064,110.59,-0.17693,0.97568,0.1294,148.94,-0.9407,-0.12897,-0.31377,170.55

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07398, steps = 104  
shifted from previous position = 2.08  
rotated from previous position = 8.84 degrees  
atoms outside contour = 2008, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.84036605 -0.40376122 -0.36160998 133.70539652  
-0.25008095 -0.88072887 0.40221409 134.35376926  
-0.48087880 -0.24757530 -0.84110763 176.24983722  
Axis -0.95799041 0.17583911 0.22657223  
Axis point 0.00000000 96.85626900 90.64730319  
Rotation angle (degrees) 160.17539700  
Shift along axis -64.53052188  
  

> view matrix models
> #19,-0.40732,-0.32026,0.85529,112.61,-0.48374,0.87,0.095389,147.65,-0.77465,-0.37488,-0.50929,170.59

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07017, steps = 160  
shifted from previous position = 4.38  
rotated from previous position = 8.17 degrees  
atoms outside contour = 2071, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96590678 -0.14882220 -0.21183967 134.73738539  
-0.05093092 -0.91150349 0.40812674 130.88544110  
-0.25383092 -0.38342319 -0.88800705 177.12345232  
Axis -0.99106684 0.05257550 0.12256561  
Axis point 0.00000000 88.98559805 82.55622297  
Rotation angle (degrees) 156.46292778  
Shift along axis -104.94314331  
  

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07017, steps = 160  
shifted from previous position = 4.38  
rotated from previous position = 8.17 degrees  
atoms outside contour = 2071, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96590678 -0.14882220 -0.21183967 134.73738539  
-0.05093092 -0.91150349 0.40812674 130.88544110  
-0.25383092 -0.38342319 -0.88800705 177.12345232  
Axis -0.99106684 0.05257550 0.12256561  
Axis point 0.00000000 88.98559805 82.55622297  
Rotation angle (degrees) 156.46292778  
Shift along axis -104.94314331  
  

> view matrix models
> #19,-0.5046,-0.21888,0.83514,109.62,-0.37778,0.92578,0.014381,150.8,-0.77631,-0.30824,-0.54984,170.19

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.5046,-0.21888,0.83514,113.58,-0.37778,0.92578,0.014381,157.26,-0.77631,-0.30824,-0.54984,168.64

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06866, steps = 120  
shifted from previous position = 3.91  
rotated from previous position = 14.1 degrees  
atoms outside contour = 2067, contour level = 0.069157  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96247291 -0.27112044 -0.01181526 133.26152818  
-0.22767769 -0.83041229 0.50850595 126.66115781  
-0.14767789 -0.48673313 -0.86097741 173.30164244  
Axis -0.98988504 0.13513174 0.04320904  
Axis point -0.00000000 96.65994258 70.33442936  
Rotation angle (degrees) 149.82091809  
Shift along axis -107.30945352  
  

> volume #15 level 0.2159

> view matrix models
> #19,-0.65663,-0.048074,0.75268,112.12,-0.2743,0.94485,-0.17895,157.15,-0.70256,-0.32396,-0.6336,166.52

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06866, steps = 80  
shifted from previous position = 2.5  
rotated from previous position = 0.0204 degrees  
atoms outside contour = 2960, contour level = 0.21595  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96246824 -0.27114460 -0.01164036 133.26039199  
-0.22782937 -0.83053335 0.50824023 126.66310985  
-0.14747430 -0.48651306 -0.86113667 173.30701515  
Axis -0.98988455 0.13516911 0.04310322  
Axis point 0.00000000 96.64896081 70.33977268  
Rotation angle (degrees) 149.83716387  
Shift along axis -107.32137218  
  

> volume #15 level 0.04281

> volume #15 level 0.07668

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06865, steps = 64  
shifted from previous position = 0.0203  
rotated from previous position = 0.0575 degrees  
atoms outside contour = 2152, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96248833 -0.27106842 -0.01175290 133.26271968  
-0.22756230 -0.83008341 0.50909423 126.65652583  
-0.14775526 -0.48732273 -0.86063054 173.28782659  
Axis -0.98988733 0.13511112 0.04322101  
Axis point 0.00000000 96.68767506 70.30298864  
Rotation angle (degrees) 149.78155402  
Shift along axis -107.31269776  
  

> view matrix models
> #19,-0.65653,-0.047608,0.75279,110.01,-0.27438,0.94471,-0.17955,154,-0.70262,-0.32443,-0.6333,167.36

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06866, steps = 76  
shifted from previous position = 1.99  
rotated from previous position = 0.0246 degrees  
atoms outside contour = 2150, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96250927 -0.27100031 -0.01160731 133.26161540  
-0.22763324 -0.83027344 0.50875252 126.66005802  
-0.14750933 -0.48703681 -0.86083456 173.29222603  
Axis -0.98989402 0.13509745 0.04311032  
Axis point -0.00000000 96.66944423 70.31135380  
Rotation angle (degrees) 149.80279770  
Shift along axis -107.33274284  
  

> view matrix models
> #19,-0.65672,-0.04791,0.75261,109.4,-0.2744,0.94475,-0.17929,156.63,-0.70244,-0.32426,-0.63358,167.97

> view matrix models
> #19,-0.65672,-0.04791,0.75261,110.98,-0.2744,0.94475,-0.17929,156.04,-0.70244,-0.32426,-0.63358,167.03

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06865, steps = 72  
shifted from previous position = 0.967  
rotated from previous position = 0.0159 degrees  
atoms outside contour = 2148, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96244076 -0.27123876 -0.01171847 133.25932541  
-0.22779296 -0.83025917 0.50870431 126.65923872  
-0.14770969 -0.48692837 -0.86086155 173.30294135  
Axis -0.98987568 0.13520489 0.04319458  
Axis point 0.00000000 96.67533121 70.32427296  
Rotation angle (degrees) 149.80742513  
Shift along axis -107.29946930  
  

> ui mousemode right translate

[Repeated 1 time(s)]

> ui mousemode right "translate selected atoms"

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06865, steps = 92  
shifted from previous position = 2.51  
rotated from previous position = 0.0242 degrees  
atoms outside contour = 2149, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.96249950 -0.27102829 -0.01176330 131.54884793  
-0.22753701 -0.83014177 0.50901037 126.12542957  
-0.14772142 -0.48724564 -0.86068000 171.55118760  
Axis -0.98989062 0.13508944 0.04321340  
Axis point 0.00000000 96.05297655 69.50166830  
Rotation angle (degrees) 149.78705549  
Shift along axis -105.76744802  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.58434,-0.26752,0.76615,111.03,-0.59932,0.7788,-0.18516,156.94,-0.54714,-0.56737,-0.61541,166.18

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07178, steps = 152  
shifted from previous position = 5.35  
rotated from previous position = 15.4 degrees  
atoms outside contour = 2130, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.98623582 -0.16208589 -0.03266587 133.38264993  
-0.12899612 -0.87785086 0.46123515 130.73665937  
-0.10343548 -0.45067286 -0.88667642 174.87184027  
Axis -0.99635038 0.07732284 0.03615388  
Axis point 0.00000000 92.31378565 72.86844163  
Rotation angle (degrees) 152.76609526  
Shift along axis -116.46462811  
  

> volume #15 step 2

> view matrix models
> #19,-0.38083,0.12138,0.91664,112.05,-0.17466,0.96406,-0.20022,152.86,-0.908,-0.23635,-0.34594,168.05

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.38083,0.12138,0.91664,112.09,-0.17466,0.96406,-0.20022,156.81,-0.908,-0.23635,-0.34594,168.95

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07022, steps = 80  
shifted from previous position = 1.66  
rotated from previous position = 7.12 degrees  
atoms outside contour = 2177, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.82514209 -0.51865125 -0.22392279 129.33235451  
-0.21425308 -0.65407193 0.72545539 127.90039635  
-0.52271996 -0.55062763 -0.65082491 172.38179215  
Axis -0.94841967 0.22207420 0.22623701  
Axis point 0.00000000 116.77937958 73.04313814  
Rotation angle (degrees) 137.72097116  
Shift along axis -55.25882895  
  

> view matrix models
> #19,-0.36483,0.24195,0.89909,116.23,-0.11457,0.94664,-0.30123,154.74,-0.924,-0.2129,-0.31764,167.27

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.35962,0.42843,0.82893,117.23,0.24671,0.9004,-0.35834,155.11,-0.89989,0.075641,-0.4295,168.84

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07576, steps = 92  
shifted from previous position = 2.54  
rotated from previous position = 10.1 degrees  
atoms outside contour = 2174, contour level = 0.076685  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.73140042 -0.66558909 -0.14847418 128.28045902  
-0.37359204 -0.57321424 0.72928349 131.09696195  
-0.57051065 -0.47792948 -0.66790793 168.17599874  
Axis -0.92029325 0.32173057 0.22259777  
Axis point 0.00000000 123.85941935 70.46975593  
Rotation angle (degrees) 139.01321496  
Shift along axis -38.44213924  
  

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.37192,0.34211,0.86292,95.248,0.076244,0.93773,-0.3389,97.495,-0.92513,-0.060253,-0.37485,165.53

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.40662,0.36469,0.83765,95.417,0.14469,0.93101,-0.3351,97.505,-0.90207,-0.015054,-0.43134,165.97

> view matrix models
> #19,-0.43921,0.34409,0.82988,95.353,0.11408,0.93763,-0.32839,97.476,-0.89111,-0.049561,-0.45106,165.94

> view matrix models
> #19,-0.39201,0.31749,0.86344,95.141,-0.0097978,0.93707,-0.34901,97.472,-0.91991,-0.14527,-0.36423,165.18

> view matrix models
> #19,-0.56305,0.12591,0.81677,94.526,-0.22104,0.92938,-0.29564,97.043,-0.79631,-0.347,-0.49546,165.13

> view matrix models
> #19,-0.5605,0.06552,0.82556,94.27,-0.27501,0.92557,-0.26018,96.828,-0.78115,-0.37287,-0.50077,165.08

> view matrix models
> #19,-0.59527,0.035189,0.80276,94.236,-0.27595,0.92933,-0.24536,96.774,-0.75466,-0.36758,-0.54348,165.31

Select a database from the database table  

> open 20026 fromDatabase emdb_fits format ccp4

Fetching url
https://files.wwpdb.org/pub/emdb/structures/EMD-20026/map/emd_20026.map.gz
failed:  
<urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed:
unable to get local issuer certificate (_ssl.c:1002)>  

> select subtract #19

Nothing selected  

> volume #15 step 1

> volume #15 level 0.0541

> select add #19

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> view matrix models
> #19,-0.80044,0.13284,0.58451,95.418,-0.0048128,0.97368,-0.22788,97.062,-0.5994,-0.18521,-0.77873,167.15

> view matrix models
> #19,-0.69165,-0.41257,0.5928,93.485,0.054478,0.78864,0.61244,92.646,-0.72018,0.45589,-0.52298,168.23

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.69165,-0.41257,0.5928,103.39,0.054478,0.78864,0.61244,149.21,-0.72018,0.45589,-0.52298,173.45

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06993, steps = 100  
shifted from previous position = 3.79  
rotated from previous position = 9.19 degrees  
atoms outside contour = 1891, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.84792891 -0.29252870 -0.44208995 135.88261780  
-0.45643657 -0.82700465 -0.32822091 130.65432750  
-0.26959640 0.48009402 -0.83476195 181.08019363  
Axis 0.95929817 -0.20471321 -0.19452383  
Axis point 0.00000000 57.44180288 120.97447748  
Rotation angle (degrees) 155.08297190  
Shift along axis 68.38086739  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.6842,-0.42549,0.5923,106.79,-0.034153,0.82997,0.55677,150.49,-0.72849,0.36071,-0.5824,172.9

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06585, steps = 56  
shifted from previous position = 0.954  
rotated from previous position = 3.02 degrees  
atoms outside contour = 1911, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.86360192 -0.41166159 -0.29107808 134.44595917  
-0.47208212 -0.86294131 -0.18019645 129.27471882  
-0.17700335 0.29303076 -0.93957585 181.26913103  
Axis 0.96475040 -0.23255985 -0.12317705  
Axis point 0.00000000 68.52806319 108.72136377  
Rotation angle (degrees) 165.80286655  
Shift along axis 77.31448651  
  

> view matrix models
> #19,-0.69347,-0.49173,0.5266,106.56,0.0057994,0.72706,0.68655,150.11,-0.72047,0.47915,-0.50134,173.36

> view matrix models
> #19,-0.71407,-0.45703,0.53032,106.65,0.045454,0.72565,0.68657,150.14,-0.6986,0.51436,-0.49739,173.49

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06993, steps = 100  
shifted from previous position = 1.26  
rotated from previous position = 6.09 degrees  
atoms outside contour = 1890, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.84791697 -0.29256524 -0.44208867 135.88400315  
-0.45662732 -0.82670757 -0.32870363 130.65989576  
-0.26931080 0.48058315 -0.83457266 181.07708847  
Axis 0.95928974 -0.20480261 -0.19447132  
Axis point 0.00000000 57.42192806 120.99315021  
Rotation angle (degrees) 155.05073207  
Shift along axis 68.37834211  
  

> view matrix models
> #19,-0.67603,-0.52825,0.51374,106.79,0.01172,0.6894,0.72428,149.26,-0.73678,0.49566,-0.45987,172.82

> view matrix models
> #19,-0.30421,-0.69079,0.65594,105.84,-0.024805,0.69409,0.71946,149.27,-0.95228,0.2026,-0.22828,170.55

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06838, steps = 88  
shifted from previous position = 2.48  
rotated from previous position = 9.37 degrees  
atoms outside contour = 1842, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.83740053 -0.12142254 -0.53293237 135.17682573  
-0.27399572 -0.93691439 -0.21706626 130.13520216  
-0.47295527 0.32779259 -0.81784187 180.27603311  
Axis 0.95759339 -0.10541018 -0.26814847  
Axis point 0.00000000 57.46507600 119.47251638  
Rotation angle (degrees) 163.47140437  
Shift along axis 67.38611615  
  

> view matrix models
> #19,-0.20717,-0.6587,0.72332,106.96,-0.00868,0.74057,0.67192,150.37,-0.97827,0.13292,-0.15914,170.99

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06861, steps = 108  
shifted from previous position = 2.06  
rotated from previous position = 12.9 degrees  
atoms outside contour = 1841, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.83518566 -0.06295313 -0.54635319 134.53569099  
-0.14484949 -0.98353107 -0.10809831 129.95536334  
-0.53055021 0.16942115 -0.83054978 180.02974236  
Axis 0.95768248 -0.05453396 -0.28261337  
Axis point 0.00000000 61.20106052 114.95409526  
Rotation angle (degrees) 171.66902314  
Shift along axis 70.87668073  
  

> view matrix models
> #19,-0.29572,-0.70539,0.64419,107.7,-0.20624,0.70559,0.67794,150.14,-0.93274,0.067626,-0.35414,172.49

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06861, steps = 120  
shifted from previous position = 0.793  
rotated from previous position = 7.12 degrees  
atoms outside contour = 1839, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.83524237 -0.06314654 -0.54624417 134.53358676  
-0.14465565 -0.98362746 -0.10747915 129.94376456  
-0.53051382 0.16878845 -0.83070184 180.01808584  
Axis 0.95769944 -0.05453025 -0.28255659  
Axis point 0.00000000 61.23025486 114.91982175  
Rotation angle (degrees) 171.70701635  
Shift along axis 70.89157868  
  

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.32724,-0.61221,0.7198,113.3,-0.17432,0.78778,0.59078,153.99,-0.92872,0.067846,-0.36451,172.44

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07415, steps = 132  
shifted from previous position = 6.56  
rotated from previous position = 17.8 degrees  
atoms outside contour = 1781, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.82552356 -0.35381504 -0.43968826 135.30649531  
-0.38349555 -0.92325825 0.02292088 131.20204246  
-0.41405557 0.14969677 -0.89785793 177.68612582  
Axis 0.95533531 -0.19315834 -0.22366115  
Axis point 0.00000000 75.94161200 107.17801663  
Rotation angle (degrees) 176.19554324  
Shift along axis 64.17882108  
  

> view matrix models
> #19,-0.51924,-0.3851,0.76294,110.94,-0.005973,0.89434,0.44736,154.65,-0.85461,0.22773,-0.46668,170.56

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0736, steps = 180  
shifted from previous position = 2.62  
rotated from previous position = 24.4 degrees  
atoms outside contour = 1882, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.66271655 -0.67585835 -0.32252483 131.54171877  
-0.71721895 -0.69671225 -0.01374801 126.86160250  
-0.21541529 0.24043196 -0.94646116 174.99342446  
Axis 0.91133434 -0.38402948 -0.14829390  
Axis point 0.00000000 84.16105344 103.74351103  
Rotation angle (degrees) 171.98369842  
Shift along axis 45.20943359  
  

> view matrix models
> #19,-0.71278,-0.10116,0.69405,108.61,0.29704,0.85288,0.42937,148.55,-0.63538,0.51221,-0.57787,169.44

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07188, steps = 228  
shifted from previous position = 1.6  
rotated from previous position = 7.5 degrees  
atoms outside contour = 1869, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.65765130 -0.62382098 -0.42230575 138.46849603  
-0.67583720 -0.73621701 0.03505141 132.39505030  
-0.33277448 0.26235833 -0.90577550 178.02630959  
Axis 0.91002908 -0.35844073 -0.20824823  
Axis point 0.00000000 87.03788829 109.92887274  
Rotation angle (degrees) 172.82560088  
Shift along axis 41.48091543  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.62728,-0.16075,0.76202,107.69,0.37228,0.79754,0.4747,147.03,-0.68405,0.58145,-0.44044,169.05

> view matrix models
> #19,-0.54348,-0.21834,0.81053,107.32,0.52732,0.66247,0.53204,146.39,-0.65312,0.71656,-0.2449,168.68

> view matrix models
> #19,-0.73221,-0.66581,0.14341,108.57,-0.015906,0.22722,0.97371,142.41,-0.6809,0.71068,-0.17696,168.34

> view matrix models
> #19,-0.74292,-0.65345,0.14518,108.59,0.029053,0.18521,0.98227,142.25,-0.66875,0.73397,-0.11861,168.17

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.74292,-0.65345,0.14518,107.44,0.029053,0.18521,0.98227,148.09,-0.66875,0.73397,-0.11861,168.64

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07275, steps = 120  
shifted from previous position = 0.569  
rotated from previous position = 14.8 degrees  
atoms outside contour = 1828, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.67955460 -0.20019334 -0.70578196 138.75162337  
-0.70447909 -0.44654753 -0.55163802 132.32728884  
-0.20473093 0.87207679 -0.44448546 177.61826996  
Axis 0.89467170 -0.31486374 -0.31689646  
Axis point 0.00000000 39.09452163 152.31014007  
Rotation angle (degrees) 127.28205253  
Shift along axis 26.18548400  
  

> view matrix models
> #19,-0.7217,-0.58997,0.36204,105.24,0.27512,0.23545,0.93213,148.69,-0.63518,0.77233,-0.0076135,168.62

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07275, steps = 96  
shifted from previous position = 2.76  
rotated from previous position = 0.0166 degrees  
atoms outside contour = 1829, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.67941213 -0.20007151 -0.70595364 138.75472247  
-0.70460324 -0.44639772 -0.55160070 132.33207265  
-0.20477651 0.87218144 -0.44425907 177.62283605  
Axis 0.89461400 -0.31490778 -0.31701560  
Axis point 0.00000000 39.09058351 152.33206952  
Rotation angle (degrees) 127.27363759  
Shift along axis 26.15030770  
  

> volume #15 step 2

> view matrix models
> #19,-0.72166,-0.59002,0.36205,105.25,0.27531,0.23524,0.93213,147.11,-0.63514,0.77236,-0.0073271,168.51

> view matrix models
> #19,-0.72166,-0.59002,0.36205,107.84,0.27531,0.23524,0.93213,148.65,-0.63514,0.77236,-0.0073271,168.48

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07275, steps = 68  
shifted from previous position = 1.28  
rotated from previous position = 0.0381 degrees  
atoms outside contour = 1839, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.67957323 -0.20058085 -0.70565398 138.74600561  
-0.70451519 -0.44663453 -0.55152148 132.32196880  
-0.20454479 0.87194319 -0.44483312 177.62536481  
Axis 0.89469263 -0.31496300 -0.31673870  
Axis point 0.00000000 39.11422991 152.28649312  
Rotation angle (degrees) 127.29703322  
Shift along axis 26.19767815  
  

> volume #15 step 1

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07275, steps = 80  
shifted from previous position = 0.00278  
rotated from previous position = 0.0125 degrees  
atoms outside contour = 1831, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.67946561 -0.20045401 -0.70579365 138.74784763  
-0.70457685 -0.44663105 -0.55144552 132.32231558  
-0.20468990 0.87197413 -0.44470569 177.62806543  
Axis 0.89465437 -0.31495607 -0.31685364  
Axis point 0.00000000 39.11262195 152.29845510  
Rotation angle (degrees) 127.29619502  
Shift along axis 26.17355212  
  

> view matrix models
> #19,-0.72173,-0.5898,0.36227,112.19,0.27524,0.23568,0.93204,151.26,-0.6351,0.77239,-0.0077639,168.43

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07895, steps = 144  
shifted from previous position = 4.82  
rotated from previous position = 22.2 degrees  
atoms outside contour = 1811, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.37080404 -0.28095887 -0.88519290 138.15512157  
-0.85887394 -0.46636351 -0.21175606 131.02785052  
-0.35332692 0.83878912 -0.41423773 172.41549640  
Axis 0.80091390 -0.40548361 -0.44059048  
Axis point 0.00000000 62.15611706 153.03308169  
Rotation angle (degrees) 139.01651002  
Shift along axis -18.44391616  
  

> view matrix models
> #19,-0.53779,-0.53304,0.65319,111.9,0.60004,0.30224,0.74067,150.49,-0.59223,0.79027,0.15731,163.67

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07895, steps = 60  
shifted from previous position = 2.05  
rotated from previous position = 0.0602 degrees  
atoms outside contour = 1813, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.37002606 -0.28044880 -0.88568007 138.16842362  
-0.85908555 -0.46618054 -0.21130008 131.03629835  
-0.35362796 0.83906148 -0.41342846 172.42047397  
Axis 0.80062340 -0.40554928 -0.44105776  
Axis point 0.00000000 62.17225415 153.10090251  
Rotation angle (degrees) 139.00715220  
Shift along axis -18.56819118  
  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.53726,-0.5334,0.65333,106.94,0.6007,0.30175,0.74034,151.32,-0.59204,0.79021,0.15829,165.72

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0731, steps = 72  
shifted from previous position = 1.94  
rotated from previous position = 1.8 degrees  
atoms outside contour = 1873, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.38334962 -0.28121981 -0.87974911 138.19019407  
-0.86387422 -0.44615198 -0.23381562 128.30785343  
-0.32674822 0.84962570 -0.41397073 176.64115742  
Axis 0.80328967 -0.41000827 -0.43199412  
Axis point 0.00000000 58.63621233 154.68752894  
Rotation angle (degrees) 137.59415487  
Shift along axis -17.90846573  
  

> view matrix models
> #19,-0.56255,-0.52703,0.63701,106.96,0.59056,0.28307,0.75572,146.06,-0.5786,0.80132,0.152,166.92

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0746, steps = 108  
shifted from previous position = 2.56  
rotated from previous position = 14.5 degrees  
atoms outside contour = 1825, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.19396980 -0.43423574 -0.87966757 138.45298452  
-0.90999705 -0.41459541 0.00400174 132.07974753  
-0.36644384 0.79971868 -0.47557223 177.23346793  
Axis 0.75090600 -0.48432145 -0.44896873  
Axis point 0.00000000 80.24815764 151.56219019  
Rotation angle (degrees) 148.00549592  
Shift along axis -39.57616212  
  

> view matrix models
> #19,-0.44909,-0.38657,0.80553,109.35,0.73671,0.34992,0.57864,151.81,-0.50555,0.8533,0.12764,167.87

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07553, steps = 60  
shifted from previous position = 2.66  
rotated from previous position = 5.32 degrees  
atoms outside contour = 1831, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.14650584 -0.48024616 -0.86481192 136.79134509  
-0.89576616 -0.43532103 0.08999214 129.42918323  
-0.41968919 0.76148488 -0.49396533 172.69636382  
Axis 0.74077508 -0.49104898 -0.45839194  
Axis point 0.00000000 85.18905065 146.31868221  
Rotation angle (degrees) 153.04846935  
Shift along axis -41.38707023  
  

> save "/Users/mansoore.esmaili/Documents/Apoferritin human/fab-mst1r.cxs"

> view matrix models
> #19,-0.38305,-0.34936,0.85511,104.09,0.76385,0.40075,0.5059,147.56,-0.51943,0.84696,0.11335,167.32

> hide #!12 models

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07637, steps = 136  
shifted from previous position = 5.36  
rotated from previous position = 4.99 degrees  
atoms outside contour = 1816, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.08430726 -0.53575879 -0.84015166 136.51965110  
-0.90350593 -0.39666224 0.16228400 131.07354630  
-0.42020151 0.74540029 -0.51750275 176.86665123  
Axis 0.72236674 -0.52023588 -0.45556660  
Axis point 0.00000000 92.22601298 146.79835150  
Rotation angle (degrees) 156.19562685  
Shift along axis -50.14644526  
  

> view matrix models
> #19,-0.34816,-0.2839,0.89341,62.6,0.8025,0.40234,0.44058,111.15,-0.48454,0.87036,0.087755,162.17

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.2137,-0.30536,0.92795,62.469,0.78471,0.51212,0.34924,111.94,-0.58186,0.8028,0.13018,161.66

> view matrix models
> #19,0.11054,-0.80251,0.58631,62.454,0.14546,0.59664,0.78922,109.78,-0.98317,-0.001952,0.18269,158.2

> view matrix models
> #19,0.77934,-0.62452,0.050999,66.024,-0.27919,-0.27323,0.92054,105.71,-0.56096,-0.73165,-0.38731,158.45

> view matrix models
> #19,0.98449,-0.17539,-0.0049133,68.061,-0.12964,-0.74598,0.65323,105.31,-0.11824,-0.64246,-0.75714,160.78

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.98449,-0.17539,-0.0049133,110.72,-0.12964,-0.74598,0.65323,142.22,-0.11824,-0.64246,-0.75714,168.21

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07439, steps = 120  
shifted from previous position = 7.5  
rotated from previous position = 10.8 degrees  
atoms outside contour = 1813, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.48076591 0.87540921 0.05022788 142.04324343  
0.76337665 0.44604644 -0.46722442 131.51150793  
-0.43141653 -0.18628279 -0.88271088 179.00598987  
Axis 0.49397532 0.84686790 -0.19698512  
Axis point 50.48011965 0.00000000 98.81627000  
Rotation angle (degrees) 163.47892015  
Shift along axis 146.27721503  
  

> view matrix models
> #19,0.96627,-0.19612,0.16692,105.64,-0.25722,-0.7668,0.5881,146.8,0.012653,-0.6112,-0.79138,164.23

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.07726, steps = 112  
shifted from previous position = 1.33  
rotated from previous position = 14.6 degrees  
atoms outside contour = 1809, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.57443623 0.81189806 -0.10413720 141.62421153  
0.79332542 0.52087169 -0.31516257 131.27574306  
-0.20163776 -0.26365549 -0.94330695 175.80849586  
Axis 0.46061448 0.87192220 -0.16609026  
Axis point 39.35889940 0.00000000 99.24743377  
Rotation angle (degrees) 176.79484849  
Shift along axis 150.49632007  
  

> view matrix models
> #19,0.92097,-0.072604,0.38281,58.672,-0.29401,-0.77421,0.5605,113.89,0.25568,-0.62875,-0.73437,140.29

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.97688,-0.17764,0.11893,59.524,-0.2108,-0.89304,0.39754,114.26,0.03559,-0.41342,-0.90984,141.7

> view matrix models
> #19,0.94321,-0.061102,0.32654,58.984,-0.18199,-0.91736,0.35402,114.39,0.27792,-0.39334,-0.87638,141.8

> view matrix models
> #19,0.98931,-0.12809,-0.069694,60.564,-0.10968,-0.96857,0.22324,114.85,-0.096099,-0.21321,-0.97227,142.61

> view matrix models
> #19,0.98986,-0.142,0.0022315,60.189,-0.1395,-0.96925,0.20272,114.92,-0.026624,-0.20098,-0.97923,142.73

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.98986,-0.142,0.0022315,65.916,-0.1395,-0.96925,0.20272,112.66,-0.026624,-0.20098,-0.97923,142.44

> view matrix models
> #19,0.98986,-0.142,0.0022315,66.472,-0.1395,-0.96925,0.20272,103.84,-0.026624,-0.20098,-0.97923,139.12

> ui mousemode right "rotate selected models"

> view matrix models
> #19,0.98374,-0.15892,0.083718,66.039,-0.17136,-0.97004,0.17224,103.95,0.053838,-0.18379,-0.98149,139.25

> view matrix models
> #19,0.99106,-0.12759,0.038906,66.36,-0.13317,-0.96333,0.23295,103.73,0.0077572,-0.23604,-0.97171,138.98

> view matrix models
> #19,0.96173,-0.087007,-0.25982,67.832,0.024504,-0.91713,0.39783,103.27,-0.2729,-0.38897,-0.8799,137.8

> view matrix models
> #19,0.99131,-0.11038,-0.071607,66.921,-0.089298,-0.96413,0.24996,103.68,-0.096629,-0.24139,-0.9656,138.86

> view matrix models
> #19,0.98259,-0.17826,0.052271,66.109,-0.1842,-0.97144,0.14958,104.04,0.024113,-0.15661,-0.98737,139.35

> view matrix models
> #19,0.51068,-0.16894,0.84301,62.217,-0.20207,-0.97662,-0.073304,105.01,0.83569,-0.13291,-0.53288,138.01

> view matrix models
> #19,0.19267,-0.68043,0.70703,60.732,0.94297,-0.070927,-0.32522,110.3,0.27144,0.72937,0.62797,135.47

> view matrix models
> #19,0.39471,-0.88765,0.23724,62.254,0.86849,0.44471,0.21898,109.66,-0.29989,0.1196,0.94645,131.39

> view matrix models
> #19,0.31068,-0.89801,0.31153,61.817,-0.28056,0.22652,0.93273,104.78,-0.90817,-0.37718,-0.18157,134.21

> view matrix models
> #19,0.1484,-0.97088,0.18808,61.986,-0.26572,0.14405,0.95323,104.4,-0.95256,-0.19143,-0.23661,135.1

> ui mousemode right "translate selected models"

> view matrix models
> #19,0.1484,-0.97088,0.18808,115.35,-0.26572,0.14405,0.95323,151.13,-0.95256,-0.19143,-0.23661,139.67

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06469, steps = 136  
shifted from previous position = 6.75  
rotated from previous position = 13 degrees  
atoms outside contour = 2202, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.64338743 0.53955350 -0.54307884 142.56923905  
0.25290259 -0.81938056 -0.51444705 128.28762157  
-0.72255995 0.19364272 -0.66363364 146.12894147  
Axis 0.90235594 0.22872220 -0.36529429  
Axis point 0.00000000 25.19953327 113.74031501  
Rotation angle (degrees) 156.89881553  
Shift along axis 104.61035774  
  

> view matrix models
> #19,0.12202,-0.90976,0.3968,51.616,-0.34726,0.33539,0.87574,91.65,-0.9298,-0.24465,-0.275,134.14

> view matrix models
> #19,0.12202,-0.90976,0.3968,56.49,-0.34726,0.33539,0.87574,96.654,-0.9298,-0.24465,-0.275,134.61

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.1076,-0.98991,0.092251,57.398,-0.98869,0.11629,0.094741,98.893,-0.10451,-0.081013,-0.99122,139.06

> view matrix models
> #19,0.060937,-0.8568,-0.51204,60.736,-0.41082,-0.48906,0.76945,94.094,-0.90968,0.16347,-0.38179,136.59

> view matrix models
> #19,0.11142,-0.84126,-0.52902,60.907,0.057899,-0.52593,0.84855,93.961,-0.99209,-0.12518,-0.0098918,133.8

> view matrix models
> #19,0.5011,-0.82181,-0.27115,60.111,-0.62601,-0.56057,0.5421,94.696,-0.59751,-0.1019,-0.79536,137.73

> view matrix models
> #19,0.57051,-0.81832,-0.069803,59.268,-0.79898,-0.57268,0.18352,96.138,-0.19015,-0.048928,-0.98053,139.06

> view matrix models
> #19,0.32119,-0.8971,0.30339,57.109,-0.68907,-0.44115,-0.57495,100.12,0.64963,-0.024386,-0.75986,138.8

> view matrix models
> #19,-0.12553,-0.91052,0.39395,56.312,-0.15975,-0.37336,-0.91383,102.3,0.97914,-0.17764,-0.098591,135.51

> view matrix models
> #19,-0.4003,-0.88433,0.24026,56.891,0.32415,-0.38188,-0.8655,102.42,0.85714,-0.26858,0.43952,132.66

> view matrix models
> #19,-0.56536,-0.81829,-0.10378,58.556,0.74937,-0.45697,-0.47919,100.73,0.34469,-0.34868,0.87156,130.03

> view matrix models
> #19,-0.54137,-0.80073,-0.25641,59.327,0.84078,-0.51614,-0.16334,99.157,-0.0015537,-0.30401,0.95267,129.56

> view matrix models
> #19,-0.31802,-0.7616,-0.56465,61.03,0.70879,-0.58653,0.39191,96.296,-0.62966,-0.27558,0.72635,130.21

> view matrix models
> #19,-0.19546,-0.76367,-0.61531,61.344,0.5138,-0.61416,0.59902,95.113,-0.83535,-0.19906,0.51241,131.29

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.19546,-0.76367,-0.61531,115.49,0.5138,-0.61416,0.59902,153.17,-0.83535,-0.19906,0.51241,145.04

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.0867, steps = 176  
shifted from previous position = 1.71  
rotated from previous position = 17.2 degrees  
atoms outside contour = 1926, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.40249942 0.81689631 -0.41312786 144.02165951  
-0.77332989 0.06193305 -0.63097161 128.38454338  
-0.48985211 0.57344983 0.65665836 152.89312220  
Axis 0.60331754 0.03843263 -0.79657446  
Axis point 216.30030768 -40.22664428 0.00000000  
Rotation angle (degrees) 86.52888043  
Shift along axis -29.96580715  
  

> view matrix models
> #19,-0.4367,-0.78004,-0.44813,115.49,0.55028,-0.6257,0.55289,140.68,-0.71167,-0.0051566,0.70249,160.44

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.05411, steps = 224  
shifted from previous position = 5.15  
rotated from previous position = 5.5 degrees  
atoms outside contour = 2174, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.43274613 0.83800913 -0.33237252 137.68179786  
-0.76088132 0.14177095 -0.63321451 138.80492442  
-0.48351877 0.52691716 0.69897632 169.16873081  
Axis 0.58556662 0.07628979 -0.80702639  
Axis point 231.35649045 -39.35200884 0.00000000  
Rotation angle (degrees) 82.14036481  
Shift along axis -45.31236719  
  

> view matrix models
> #19,-0.45191,-0.72307,-0.52245,70.744,0.52281,-0.68922,0.50165,99.139,-0.7228,-0.046445,0.68949,150.96

> view matrix models
> #19,-0.45191,-0.72307,-0.52245,68.861,0.52281,-0.68922,0.50165,96.736,-0.7228,-0.046445,0.68949,157.23

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.060705,-0.61042,-0.78975,70.774,0.3025,-0.76525,0.56823,95.992,-0.95121,-0.20441,0.23111,158.55

> view matrix models
> #19,0.33055,-0.41724,-0.84655,72.029,-0.063628,-0.90478,0.42109,95.87,-0.94164,-0.085328,-0.32563,161.51

> view matrix models
> #19,0.64863,-0.6522,-0.39232,69.37,-0.45431,-0.74534,0.48793,95.85,-0.61064,-0.13825,-0.77975,163.61

> view matrix models
> #19,0.6077,-0.77395,0.17809,66.324,-0.78408,-0.54906,0.28939,97.206,-0.12619,-0.3155,-0.9405,164.07

> view matrix models
> #19,-0.016143,-0.71501,0.69893,63.713,-0.94222,-0.22305,-0.24994,100.7,0.33461,-0.66258,-0.6701,161.94

> view matrix models
> #19,-0.45581,-0.37421,0.8076,64.124,-0.72541,-0.3696,-0.58068,101.83,0.51578,-0.85051,-0.10299,158.84

> view matrix models
> #19,-0.94508,-0.077115,0.31763,67.039,-0.22949,-0.53542,-0.81281,102.65,0.23274,-0.84106,0.48831,155.99

> view matrix models
> #19,-0.88776,0.077795,-0.45369,71.124,0.21013,-0.80843,-0.5498,100.81,-0.40955,-0.58343,0.70135,155.47

> view matrix models
> #19,-0.49628,0.08066,-0.86441,73.286,0.21083,-0.95467,-0.21013,98.746,-0.84217,-0.28653,0.45678,157.32

> view matrix models
> #19,0.21402,-0.27333,-0.93781,72.874,-0.11725,-0.9603,0.25313,96.386,-0.96977,0.05578,-0.23757,161.6

> view matrix models
> #19,0.55968,-0.66144,-0.49926,69.751,-0.5438,-0.74774,0.38102,96.255,-0.62534,0.058248,-0.77818,164.31

> view matrix models
> #19,0.94078,-0.33424,-0.056723,69.232,-0.33664,-0.9408,-0.039629,97.61,-0.04012,0.056378,-0.9976,165.74

> view matrix models
> #19,0.9312,-0.24787,0.26727,68.076,-0.20097,-0.96082,-0.19088,98.323,0.30411,0.12403,-0.94453,166.01

> view matrix models
> #19,0.9543,-0.098532,0.28214,68.568,-0.055413,-0.98605,-0.15693,98.189,0.29367,0.13413,-0.94645,166.04

> view matrix models
> #19,0.77932,-0.52018,0.34938,66.602,-0.36433,-0.82978,-0.42277,99.72,0.50983,0.20218,-0.83618,165.96

> view matrix models
> #19,-0.37675,-0.82601,0.41924,64.297,0.22009,-0.51945,-0.82567,103.11,0.89979,-0.2188,0.3775,159.25

> view matrix models
> #19,-0.77207,0.4528,0.44596,68.514,0.24764,0.86058,-0.44505,106.42,-0.5853,-0.23317,-0.77657,163.27

> view matrix models
> #19,-0.13067,0.27101,0.95367,66.053,-0.2755,0.9141,-0.29752,105.55,-0.95238,-0.30161,-0.044779,159.45

> view matrix models
> #19,0.88001,0.21528,0.42335,69.013,-0.33841,0.90964,0.24088,103.06,-0.33325,-0.35525,0.87335,155.58

> view matrix models
> #19,0.87694,-0.34803,0.33143,67.382,0.39701,0.91325,-0.091463,105.13,-0.27085,0.21179,0.93903,157.39

> view matrix models
> #19,-0.20537,-0.24702,0.947,64.147,0.30135,0.90465,0.30133,103.25,-0.93113,0.34726,-0.11135,162.12

> view matrix models
> #19,-0.98703,-0.015991,0.15976,67.941,0.048703,0.91832,0.39283,102.7,-0.15299,0.39551,-0.90563,166.47

> view matrix models
> #19,-0.97915,-0.18624,0.081142,67.684,-0.10587,0.8087,0.57862,101.34,-0.17338,0.55796,-0.81155,166.62

> view matrix models
> #19,-0.96056,-0.27751,0.017721,67.653,-0.19404,0.71454,0.67215,100.51,-0.19919,0.6422,-0.7402,166.58

> view matrix models
> #19,-0.95614,-0.29287,0.0051377,67.658,-0.20935,0.69551,0.68734,100.36,-0.20487,0.65612,-0.72632,166.56

> view matrix models
> #19,-0.97633,-0.20477,0.069679,67.671,-0.12341,0.79193,0.598,101.18,-0.17763,0.57525,-0.79846,166.62

> view matrix models
> #19,-0.74364,-0.5328,-0.40389,68.794,-0.50144,0.044888,0.86403,96.984,-0.44223,0.84505,-0.30055,165.15

> view matrix models
> #19,-0.77319,-0.5243,-0.35678,68.59,-0.48296,0.1222,0.86707,97.264,-0.411,0.84272,-0.3477,165.38

> view matrix models
> #19,-0.62918,-0.52717,-0.57117,69.657,-0.53861,-0.2341,0.80938,96.19,-0.56039,0.81688,-0.13665,164.22

> view matrix models
> #19,-0.37161,-0.3205,-0.87131,71.957,-0.44946,-0.75909,0.47091,95.88,-0.81234,0.56662,0.13803,161.88

> view matrix models
> #19,0.81343,-0.57402,-0.094024,68.433,-0.55074,-0.70804,-0.44201,100.11,0.18715,0.41133,-0.89207,166.72

> view matrix models
> #19,0.41741,-0.63072,0.65419,64.551,-0.26744,-0.77329,-0.5749,100.68,0.86847,0.065013,-0.49145,164.18

> view matrix models
> #19,-0.29639,-0.32677,0.89743,64.012,-0.22083,-0.89074,-0.39726,99.493,0.92919,-0.31592,0.19184,159.76

> view matrix models
> #19,-0.20716,-0.071817,0.97567,64.652,-0.54359,-0.82073,-0.17583,98.502,0.81339,-0.56678,0.13098,159.04

> view matrix models
> #19,-0.17929,0.077989,0.9807,65.194,-0.43179,-0.90195,-0.0072125,97.532,0.88398,-0.42475,0.19538,159.31

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.17929,0.077989,0.9807,81.945,-0.43179,-0.90195,-0.0072125,151.55,0.88398,-0.42475,0.19538,146.82

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.05751, steps = 268  
shifted from previous position = 30.8  
rotated from previous position = 8.28 degrees  
atoms outside contour = 2102, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
-0.11847249 0.72559613 -0.67784551 139.44955504  
0.45369650 0.64678371 0.61305002 127.60853080  
0.88324615 -0.23490657 -0.40582650 177.23007446  
Axis -0.47181808 -0.86861908 -0.15128978  
Axis point -17.58411985 0.00000000 93.12592541  
Rotation angle (degrees) 116.02464037  
Shift along axis -203.45112417  
  

> view matrix models
> #19,-0.13209,0.038453,0.99049,107.33,-0.54189,-0.83951,-0.039673,146.55,0.83001,-0.54197,0.13173,167.19

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06102, steps = 116  
shifted from previous position = 1.6  
rotated from previous position = 12.4 degrees  
atoms outside contour = 1999, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.04585068 0.79490916 -0.60499351 138.68018304  
0.37088998 0.54879410 0.74917665 133.24650968  
0.92754425 -0.25873629 -0.26966126 176.42880770  
Axis -0.53537064 -0.81403432 -0.22522522  
Axis point -29.08588556 0.00000000 78.24866014  
Rotation angle (degrees) 109.72513528  
Shift along axis -222.44874833  
  

> view matrix models
> #19,-0.30601,-0.048557,0.95079,89.36,-0.57143,-0.78942,-0.22423,133.5,0.76146,-0.61193,0.21383,186.29

> volume #15 step 2

> select add #15

3495 atoms, 3537 bonds, 233 residues, 3 models selected  

> select subtract #15

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #19,-0.28738,-0.94627,0.14831,89.738,-0.38016,-0.02944,-0.92445,139.56,0.87914,-0.32205,-0.35127,189.98

> view matrix models
> #19,-0.5382,-0.81862,0.20051,89.774,-0.75295,0.36011,-0.55081,139,0.3787,-0.44741,-0.81019,191.22

> view matrix models
> #19,-0.99192,0.047489,0.11762,92.944,-0.12108,-0.63087,-0.76639,136.86,0.037808,-0.77444,0.63152,183.27

> view matrix models
> #19,-0.025662,0.067898,0.99736,89.786,-0.052559,-0.9964,0.06648,131.83,0.99829,-0.050715,0.029138,189.34

> view matrix models
> #19,-0.24204,0.039351,0.96947,89.643,-0.2998,-0.95332,-0.036156,132.26,0.92279,-0.2994,0.24254,187.42

> view matrix models
> #19,-0.46131,0.046853,0.886,89.88,-0.22931,-0.97097,-0.068047,132.39,0.85709,-0.23456,0.45866,186.63

> view matrix models
> #19,-0.49837,0.047699,0.86565,89.947,-0.24379,-0.96591,-0.087131,132.49,0.83198,-0.25446,0.49301,186.38

> ui mousemode right "translate selected models"

> view matrix models
> #19,-0.49837,0.047699,0.86565,104.84,-0.24379,-0.96591,-0.087131,142.12,0.83198,-0.25446,0.49301,186.95

> fitmap #19 inMap #15

Fit molecule ranked_4-2.pdb (#19) to map
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) using 3495 atoms  
average map value = 0.06046, steps = 232  
shifted from previous position = 14.8  
rotated from previous position = 23 degrees  
atoms outside contour = 2088, contour level = 0.054102  
  
Position of ranked_4-2.pdb (#19) relative to
cryosparc_P1095_J77_008_volume_map_sharp.mrc (#15) coordinates:  
Matrix rotation and translation  
0.23596387 0.75517369 -0.61158299 132.69137637  
-0.19458905 0.65332698 0.73164128 130.20947674  
0.95207991 -0.05363356 0.30111010 182.65375151  
Axis -0.39442887 -0.78539863 -0.47704807  
Axis point -13.51053939 0.00000000 77.93768700  
Rotation angle (degrees) 84.53714169  
Shift along axis -241.73827319  
  

> view matrix models
> #19,-0.76187,-0.072025,0.64371,58.653,-0.21661,-0.90825,-0.35799,134.42,0.61044,-0.41218,0.67637,176.74

> view matrix models
> #19,-0.76187,-0.072025,0.64371,58.523,-0.21661,-0.90825,-0.35799,134.34,0.61044,-0.41218,0.67637,176.73

> hide #!15 models

> hide #19 models

> select subtract #19

Nothing selected  

> open "/Users/mansoore.esmaili/Documents/Apoferritin human/emd_20026.map"

Opened emd_20026.map as #20, grid size 336,336,336, pixel 0.65, shown at level
0.0202, step 2, values float32  

> surface dust #20 size 6.5

> open /Users/mansoore.esmaili/Downloads/2iu2-sf.cif

Summary of feedback from opening /Users/mansoore.esmaili/Downloads/2iu2-sf.cif  
---  
warning | No mmCIF models found.  
  

> open /Users/mansoore.esmaili/Downloads/2iu2-sf.cif

Summary of feedback from opening /Users/mansoore.esmaili/Downloads/2iu2-sf.cif  
---  
warning | No mmCIF models found.  
  

> open 2IU2 fromDatabase pdb format mmcif

Summary of feedback from opening 2IU2 fetched from pdb  
---  
warnings | Unable to fetch template for 'GOL': will use incomplete information in mmCIF file  
Unable to fetch template for 'ZN': will connect using distance criteria  
note | Fetching compressed mmCIF 2iu2 from http://files.rcsb.org/download/2iu2.cif  
  
2iu2 title:  
Recombinant human H ferritin, K86Q, E27D and E107D mutant, soaked with Zn ions
[more info...]  
  
Chain information for 2iu2 #21  
---  
Chain | Description | UniProt  
A | FERRITIN HEAVY CHAIN | FRIH_HUMAN 1-182  
  
Non-standard residues in 2iu2 #21  
---  
GOL — glycerol (glycerin; propane-1,2,3-triol)  
ZN — zinc ion  
  
2iu2 mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
  

> fitmap #21 inMap #20

Fit molecule 2iu2 (#21) to map emd_20026.map (#20) using 1575 atoms  
average map value = 8.469e-06, steps = 188  
shifted from previous position = 2.28  
rotated from previous position = 5.65 degrees  
atoms outside contour = 1575, contour level = 0.020173  
  
Position of 2iu2 (#21) relative to emd_20026.map (#20) coordinates:  
Matrix rotation and translation  
0.99906782 0.00938804 0.04213486 -0.39039547  
-0.01308327 0.99600800 0.08830002 -2.30177174  
-0.04113769 -0.08876897 0.99520237 3.03210410  
Axis -0.89901614 0.42279203 -0.11409154  
Axis point 0.00000000 31.67721775 22.86417167  
Rotation angle (degrees) 5.65160974  
Shift along axis -0.96813634  
  

> volume #15 step 4

> volume #20 level 0.03132

> color #21 #f7f44dff

> color #21 #f84350ff

> hide #!21 models

> open /Users/mansoore.esmaili/Downloads/2iu2.pdb1

2iu2.pdb1 title:  
Recombinant human H ferritin, K86Q, E27D and E107D mutant, soaked with Zn ions
[more info...]  
  
Chain information for 2iu2.pdb1  
---  
Chain | Description  
22.1/A | No description available  
22.2/A 22.3/A 22.4/A 22.5/A 22.6/A 22.7/A 22.8/A 22.9/A 22.10/A 22.11/A 22.12/A 22.13/A 22.14/A 22.15/A 22.16/A 22.17/A 22.18/A 22.19/A 22.20/A 22.21/A 22.22/A 22.23/A 22.24/A | No description available  
  

> ui mousemode right "move picked models"

> view matrix models #22.1,1,0,0,41.361,0,1,0,27.875,0,0,1,-2.2457

> hide #!22 models

> show #!22 models

> close #22

> open /Users/mansoore.esmaili/Downloads/2iu2.pdb1

2iu2.pdb1 title:  
Recombinant human H ferritin, K86Q, E27D and E107D mutant, soaked with Zn ions
[more info...]  
  
Chain information for 2iu2.pdb1  
---  
Chain | Description  
22.1/A | No description available  
22.2/A 22.3/A 22.4/A 22.5/A 22.6/A 22.7/A 22.8/A 22.9/A 22.10/A 22.11/A 22.12/A 22.13/A 22.14/A 22.15/A 22.16/A 22.17/A 22.18/A 22.19/A 22.20/A 22.21/A 22.22/A 22.23/A 22.24/A | No description available  
  

> select add #21

1575 atoms, 1445 bonds, 9 pseudobonds, 331 residues, 2 models selected  

> select subtract #21

Nothing selected  

> select add #22

37800 atoms, 34680 bonds, 9 pseudobonds, 7944 residues, 26 models selected  

> ui mousemode right "translate selected models"

> view matrix models #22,1,0,0,123.58,0,1,0,82.532,0,0,1,-6.5287

> volume #20 level 0.02405

> fitmap #22.1 inMap #20

Fit molecule 2iu2.pdb1 (#22.1) to map emd_20026.map (#20) using 1575 atoms  
average map value = 0.0001456, steps = 2000  
shifted from previous position = 0.959  
rotated from previous position = 4.13 degrees  
atoms outside contour = 1575, contour level = 0.02405  
  
Position of 2iu2.pdb1 (#22.1) relative to emd_20026.map (#20) coordinates:  
Matrix rotation and translation  
0.99920638 -0.00500547 0.03951663 -0.89288650  
0.00262172 0.99818617 0.06014559 -2.44851180  
-0.03974601 -0.05999425 0.99740711 0.33325107  
Axis -0.83353458 0.54992710 0.05291778  
Axis point 0.00000000 4.53604910 35.50124224  
Rotation angle (degrees) 4.13268882  
Shift along axis -0.58461630  
  

> select subtract #22

Nothing selected  

> close #22

> open /Users/mansoore.esmaili/Downloads/2iu2-sf.cif

Summary of feedback from opening /Users/mansoore.esmaili/Downloads/2iu2-sf.cif  
---  
warning | No mmCIF models found.  
  

> show #!21 models

> hide #!21 models

> close #21

> select add #20

2 models selected  

> select subtract #20

Nothing selected  

> open /Users/mansoore.esmaili/Downloads/2iu2-assembly1.cif

Summary of feedback from opening
/Users/mansoore.esmaili/Downloads/2iu2-assembly1.cif  
---  
warnings | Unable to fetch template for 'GOL': will connect using distance criteria  
Unable to fetch template for 'ZN': will connect using distance criteria  
notes | Combining 4 symmetry atoms into HOH /A-15:2150 O  
Combining 4 symmetry atoms into ZN /A-15:214 ZN  
Combining 2 symmetry atoms into HOH /A-15:2036 O  
Combining 2 symmetry atoms into HOH /A-22:2036 O  
Combining 2 symmetry atoms into HOH /A-12:2036 O  
Combining 2 symmetry atoms into HOH /A-18:2036 O  
Combining 3 symmetry atoms into HOH /A-19:2152 O  
Combining 3 symmetry atoms into HOH /A-10:2152 O  
Combining 3 symmetry atoms into HOH /A-21:2152 O  
Combining 3 symmetry atoms into HOH /A-14:2152 O  
Combining 3 symmetry atoms into ZN /A-19:211 ZN  
3 messages similar to the above omitted  
Combining 4 symmetry atoms into HOH /A-2:2150 O  
Combining 4 symmetry atoms into ZN /A-2:214 ZN  
Combining 2 symmetry atoms into HOH /A-9:2036 O  
Combining 2 symmetry atoms into HOH /A-3:2036 O  
Combining 4 symmetry atoms into HOH /A-8:2150 O  
Combining 4 symmetry atoms into ZN /A-8:214 ZN  
Combining 4 symmetry atoms into ZN /A-3:214 ZN  
Combining 4 symmetry atoms into HOH /A-3:2150 O  
Combining 2 symmetry atoms into HOH /A-16:2036 O  
Combining 2 symmetry atoms into HOH /A-7:2036 O  
Combining 4 symmetry atoms into ZN /A-7:214 ZN  
Combining 4 symmetry atoms into HOH /A-7:2150 O  
Combining 3 symmetry atoms into ZN /A-6:211 ZN  
Combining 3 symmetry atoms into ZN /A:211 ZN  
Combining 3 symmetry atoms into ZN /A-11:211 ZN  
Combining 3 symmetry atoms into ZN /A-4:211 ZN  
Combining 3 symmetry atoms into HOH /A-6:2152 O  
3 messages similar to the above omitted  
Combining 2 symmetry atoms into HOH /A-2:2036 O  
Combining 2 symmetry atoms into HOH /A-8:2036 O  
Combining 2 symmetry atoms into HOH /A:2036 O  
Combining 2 symmetry atoms into HOH /A-5:2036 O  
Combining 4 symmetry atoms into ZN /A:214 ZN  
Combining 4 symmetry atoms into HOH /A:2150 O  
  
2iu2-assembly1.cif title:  
Recombinant human H ferritin, K86Q, E27D and E107D mutant, soaked with Zn ions
[more info...]  
  
Chain information for 2iu2-assembly1.cif #21  
---  
Chain | Description  
A A-10 A-11 A-12 A-13 A-14 A-15 A-16 A-17 A-18 A-19 A-2 A-20 A-21 A-22 A-23 A-24 A-3 A-4 A-5 A-6 A-7 A-8 A-9 | FERRITIN HEAVY CHAIN  
  
Non-standard residues in 2iu2-assembly1.cif #21  
---  
GOL — glycerol (glycerin; propane-1,2,3-triol)  
ZN — zinc ion  
  

> hide #!20 models

> show #!20 models

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> rainbow sel

> show sel cartoons

> hide sel surfaces

[Repeated 1 time(s)]

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 2iu2-assembly1.cif_A SES surface #21.1: minimum, -26.80,
mean -3.70, maximum 14.29  
Coulombic values for 2iu2-assembly1.cif_A-10 SES surface #21.2: minimum,
-27.56, mean -3.70, maximum 14.06  
Coulombic values for 2iu2-assembly1.cif_A-11 SES surface #21.3: minimum,
-26.80, mean -3.71, maximum 14.29  
Coulombic values for 2iu2-assembly1.cif_A-12 SES surface #21.4: minimum,
-20.56, mean -3.98, maximum 14.03  
Coulombic values for 2iu2-assembly1.cif_A-13 SES surface #21.5: minimum,
-24.79, mean -4.00, maximum 14.08  
Coulombic values for 2iu2-assembly1.cif_A-14 SES surface #21.6: minimum,
-26.80, mean -3.72, maximum 14.29  
Coulombic values for 2iu2-assembly1.cif_A-15 SES surface #21.7: minimum,
-24.98, mean -4.00, maximum 13.48  
Coulombic values for 2iu2-assembly1.cif_A-16 SES surface #21.8: minimum,
-25.50, mean -3.99, maximum 13.91  
Coulombic values for 2iu2-assembly1.cif_A-17 SES surface #21.9: minimum,
-25.12, mean -3.69, maximum 13.95  
Coulombic values for 2iu2-assembly1.cif_A-18 SES surface #21.10: minimum,
-24.79, mean -4.01, maximum 14.08  
Coulombic values for 2iu2-assembly1.cif_A-19 SES surface #21.11: minimum,
-24.00, mean -3.69, maximum 13.54  
Coulombic values for 2iu2-assembly1.cif_A-2 SES surface #21.12: minimum,
-22.93, mean -3.69, maximum 13.95  
Coulombic values for 2iu2-assembly1.cif_A-20 SES surface #21.13: minimum,
-25.07, mean -3.99, maximum 13.50  
Coulombic values for 2iu2-assembly1.cif_A-21 SES surface #21.14: minimum,
-20.32, mean -3.69, maximum 14.07  
Coulombic values for 2iu2-assembly1.cif_A-22 SES surface #21.15: minimum,
-24.35, mean -4.00, maximum 13.50  
Coulombic values for 2iu2-assembly1.cif_A-23 SES surface #21.16: minimum,
-27.56, mean -3.69, maximum 14.06  
Coulombic values for 2iu2-assembly1.cif_A-24 SES surface #21.17: minimum,
-26.27, mean -4.00, maximum 13.48  
Coulombic values for 2iu2-assembly1.cif_A-3 SES surface #21.18: minimum,
-24.79, mean -4.01, maximum 14.08  
Coulombic values for 2iu2-assembly1.cif_A-4 SES surface #21.19: minimum,
-20.22, mean -3.70, maximum 14.33  
Coulombic values for 2iu2-assembly1.cif_A-5 SES surface #21.20: minimum,
-20.52, mean -4.00, maximum 14.28  
Coulombic values for 2iu2-assembly1.cif_A-6 SES surface #21.21: minimum,
-20.32, mean -3.69, maximum 14.07  
Coulombic values for 2iu2-assembly1.cif_A-7 SES surface #21.22: minimum,
-20.52, mean -3.99, maximum 14.28  
Coulombic values for 2iu2-assembly1.cif_A-8 SES surface #21.23: minimum,
-27.56, mean -3.69, maximum 14.06  
Coulombic values for 2iu2-assembly1.cif_A-9 SES surface #21.24: minimum,
-24.98, mean -4.00, maximum 13.48  
To also show corresponding color key, enter the above coulombic command and
add key true  

> color sel bychain

> show sel surfaces

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> show sel atoms

> style sel sphere

Changed 37720 atom styles  

> show sel cartoons

> hide sel cartoons

> cartoon (#!21 & sel)

> surface hidePatches (#!21 & sel)

> surface style #21 solid

> hide #!20 models

> show #!20 models

> hide sel cartoons

[Repeated 1 time(s)]

> show sel cartoons

> hide sel cartoons

> hide sel atoms

> show sel cartoons

> view matrix models #21,1,0,0,118.63,0,1,0,96.59,0,0,1,-9.1455

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = -0.0001528, steps = 256  
shifted from previous position = 2.02  
rotated from previous position = 1.69 degrees  
atoms outside contour = 37720, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99959925 -0.02054237 -0.01947668 120.63084107  
0.02070374 0.99975268 0.00812009 96.53764283  
0.01930505 -0.00852007 0.99977734 -9.36741048  
Axis -0.28198965 -0.65720802 0.69897028  
Axis point -1307.79394648 4470.04510887 0.00000000  
Rotation angle (degrees) 1.69075230  
Shift along axis -104.00950318  
  

> view matrix models
> #21,0.9996,-0.020542,-0.019477,120.61,0.020704,0.99975,0.0081201,96.162,0.019305,-0.0085201,0.99978,-9.3166

> view matrix models
> #21,0.9996,-0.020542,-0.019477,105.95,0.020704,0.99975,0.0081201,99.342,0.019305,-0.0085201,0.99978,110.75

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002218, steps = 2000  
shifted from previous position = 0.88  
rotated from previous position = 3.49 degrees  
atoms outside contour = 35913, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99836268 0.02347690 -0.05216120 106.47088705  
-0.02160001 0.99910895 0.03625936 99.14257277  
0.05296598 -0.03507331 0.99798019 110.06054465  
Axis -0.52916008 -0.77985460 -0.33438960  
Axis point -988.70579722 0.00000000 342.95731468  
Rotation angle (degrees) 3.86476790  
Shift along axis -170.46003665  
  

> view matrix models
> #21,0.99836,0.023477,-0.052161,108.4,-0.0216,0.99911,0.036259,99.833,0.052966,-0.035073,0.99798,115.55

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002211, steps = 56  
shifted from previous position = 1.15  
rotated from previous position = 0.855 degrees  
atoms outside contour = 35910, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99883648 0.02574401 -0.04077898 107.75488193  
-0.02387289 0.99866877 0.04572504 100.66684169  
0.04190184 -0.04469833 0.99812138 115.99042654  
Axis -0.68403805 -0.62546701 -0.37534379  
Axis point 0.00000000 1069.32005905 294.61218652  
Rotation angle (degrees) 3.78974300  
Shift along axis -180.20851451  
  

> view matrix models
> #21,0.99884,0.025744,-0.040779,109.15,-0.023873,0.99867,0.045725,109.66,0.041902,-0.044698,0.99812,108.55

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 76  
shifted from previous position = 0.804  
rotated from previous position = 3.79 degrees  
atoms outside contour = 22330, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 0.00000526 0.00006198 109.19714773  
-0.00000525 1.00000000 -0.00004474 109.19496025  
-0.00006199 0.00004474 1.00000000 109.20286831  
Axis 0.58388450 0.80893336 -0.06859816  
Axis point 1921801.67003418 0.00000000 -399522.73139623  
Rotation angle (degrees) 0.00439033  
Shift along axis 144.59885192  
  

> volume #20 step 1

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 24  
shifted from previous position = 0.0037  
rotated from previous position = 0.000195 degrees  
atoms outside contour = 13191, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 0.00000366 0.00006372 109.19539768  
-0.00000366 1.00000000 -0.00004230 109.19416588  
-0.00006372 0.00004230 1.00000000 109.19970419  
Axis 0.55237693 0.83222253 -0.04780577  
Axis point 1823191.78094311 0.00000000 -448205.90934980  
Rotation angle (degrees) 0.00438711  
Shift along axis 145.97048672  
  

> view matrix models
> #21,1,3.6618e-06,6.3723e-05,110.7,-3.6591e-06,1,-4.2295e-05,107.56,-6.3723e-05,4.2295e-05,1,108.58

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 76  
shifted from previous position = 2.31  
rotated from previous position = 0.00663 degrees  
atoms outside contour = 13186, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 -0.00001109 -0.00002046 109.19634521  
0.00001109 1.00000000 0.00003575 109.20354228  
0.00002046 -0.00003575 1.00000000 109.20237641  
Axis -0.83808997 -0.47962705 0.25992900  
Axis point -0.00000000 3894925.16662155 -1505071.90101093  
Rotation angle (degrees) 0.00244375  
Shift along axis -115.50847048  
  

> color zone #20 near sel & #21 distance 3.9

> hide #!21 models

> show #!21 models

> view matrix models
> #21,1,-1.1086e-05,-2.0457e-05,106.51,1.1087e-05,1,3.5746e-05,110.68,2.0457e-05,-3.5746e-05,1,113.13

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.003323, steps = 64  
shifted from previous position = 1.73  
rotated from previous position = 0.255 degrees  
atoms outside contour = 33597, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99999338 -0.00262276 0.00252346 106.46518746  
0.00261622 0.99999321 0.00259364 111.93511670  
-0.00253025 -0.00258702 0.99999345 111.93502472  
Axis -0.57984602 0.56563702 0.58637305  
Axis point -28108.53275273 55524.25435086 0.00000000  
Rotation angle (degrees) 0.25595667  
Shift along axis 67.21691189  
  

> view matrix models
> #21,0.99999,-0.0026228,0.0025235,111.01,0.0026162,0.99999,0.0025936,108.48,-0.0025302,-0.002587,0.99999,107.77

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.003324, steps = 80  
shifted from previous position = 2.58  
rotated from previous position = 0.512 degrees  
atoms outside contour = 33617, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99999329 0.00262520 -0.00255604 111.94066258  
-0.00263173 0.99999327 -0.00255485 106.46032600  
0.00254932 0.00256156 0.99999347 106.45971866  
Axis 0.57246955 -0.57123359 -0.58819282  
Axis point 27712.21654079 -55512.23297750 0.00000000  
Rotation angle (degrees) 0.25603920  
Shift along axis -59.34993565  
  

> color #20 #ffb2b23c models

> color #20 #b7f7ec3c models

> color #20 #5cf7e93c models

> color #20 #41afa53c models

> color #20 #41afa53b models

> view matrix models
> #21,0.99999,0.0026252,-0.002556,111.09,-0.0026317,0.99999,-0.0025548,107.78,0.0025493,0.0025616,0.99999,109.21

> color zone #20 near sel & #21 distance 3.9

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 60  
shifted from previous position = 2.36  
rotated from previous position = 0.253 degrees  
atoms outside contour = 13207, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99999999 0.00010706 0.00000283 109.20156758  
-0.00010706 0.99999999 0.00001072 109.19816974  
-0.00000283 -0.00001072 1.00000000 109.20022648  
Axis -0.09957741 0.02627818 -0.99468276  
Axis point 1048688.46469575 -911510.81604439 0.00000000  
Rotation angle (degrees) 0.00616663  
Shift along axis -116.62406250  
  

> view matrix models
> #21,1,0.00010706,2.8288e-06,106.99,-0.00010706,1,1.0717e-05,110.02,-2.8277e-06,-1.0717e-05,1,109.84

> ui mousemode right "rotate selected models"

> view matrix models
> #21,0.80467,0.34575,0.48267,106.99,-0.54766,0.74619,0.3785,110.02,-0.2293,-0.56891,0.78979,109.84

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002768, steps = 108  
shifted from previous position = 2.29  
rotated from previous position = 1.86 degrees  
atoms outside contour = 34027, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.81763137 0.32288251 0.47668210 108.86863952  
-0.53035456 0.74459782 0.40533706 109.32659857  
-0.22406020 -0.58422682 0.78004875 108.73773965  
Axis -0.66742327 0.47262408 -0.57547602  
Axis point 0.00000000 195.62827414 -243.89210196  
Rotation angle (degrees) 47.84496808  
Shift along axis -83.56704182  
  

> view matrix models
> #21,0.99872,-0.043992,-0.024864,108.87,0.045028,0.99807,0.04279,109.33,0.022933,-0.043855,0.99877,108.74

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 68  
shifted from previous position = 0.582  
rotated from previous position = 3.82 degrees  
atoms outside contour = 13208, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 -0.00000116 -0.00000100 109.19947373  
0.00000116 1.00000000 0.00000061 109.20045973  
0.00000100 -0.00000061 1.00000000 109.19978296  
Axis -0.36883181 -0.60658531 0.70428499  
Axis point -78878395.48391864 84963331.33298789 0.00000000  
Rotation angle (degrees) 0.00009410  
Shift along axis -29.60786606  
  

> view matrix models
> #21,0.99912,0.039016,0.015225,109.2,-0.039339,0.99899,0.021555,109.2,-0.014368,-0.022135,0.99965,109.2

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 60  
shifted from previous position = 0.00538  
rotated from previous position = 2.7 degrees  
atoms outside contour = 13188, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 0.00007765 0.00004403 109.19656159  
-0.00007765 1.00000000 0.00005600 109.20332227  
-0.00004403 -0.00005600 1.00000000 109.19628645  
Axis -0.53144343 0.41783239 -0.73687446  
Axis point 1906163.18267532 -770622.43948252 0.00000000  
Rotation angle (degrees) 0.00603743  
Shift along axis -92.86706501  
  

> view matrix models
> #21,0.99738,-0.067958,-0.024968,109.2,0.068875,0.9969,0.037937,109.2,0.022312,-0.039557,0.99897,109.2

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 88  
shifted from previous position = 0.0104  
rotated from previous position = 4.7 degrees  
atoms outside contour = 13195, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99999999 -0.00011845 -0.00001287 109.20348513  
0.00011845 0.99999999 0.00006208 109.19828446  
0.00001286 -0.00006208 1.00000000 109.19043399  
Axis -0.46206573 -0.09575662 0.88166089  
Axis point -950369.83237547 1059885.90338705 0.00000000  
Rotation angle (degrees) 0.00769778  
Shift along axis 35.35328890  
  

> view matrix models
> #21,0.99947,0.010491,-0.030681,109.2,-0.011109,0.99974,-0.020059,109.2,0.030463,0.020389,0.99933,109.19

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 44  
shifted from previous position = 0.00964  
rotated from previous position = 2.18 degrees  
atoms outside contour = 13188, contour level = 0.02405  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99999999 0.00003916 -0.00012888 109.20477687  
-0.00003917 1.00000000 -0.00008088 109.19230958  
0.00012888 0.00008089 0.99999999 109.19788175  
Axis 0.51479682 -0.82028028 -0.24924785  
Axis point -730055.90986701 0.00000000 1089298.26562042  
Rotation angle (degrees) 0.00900219  
Shift along axis -60.56736441  
  

> color #20 #b9907c3b models

> color #21 #41cac6ff

> color #21 #17caa6ff

> color #21 #cac061ff

> color #21 #c773caff

> color #20 #c0be233b models

> color #20 #e6e22a3b models

> view matrix models
> #21,0.81164,-0.54569,-0.20848,109.2,0.58296,0.73377,0.34891,109.19,-0.037419,-0.40473,0.91367,109.2

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.81164,-0.54569,-0.20848,109.98,0.58296,0.73377,0.34891,110.01,-0.037419,-0.40473,0.91367,111.29

> volume #20 step 4

> view matrix models
> #21,0.81164,-0.54569,-0.20848,78.781,0.58296,0.73377,0.34891,85.188,-0.037419,-0.40473,0.91367,67.757

> volume #20 step 8

> volume #20 level 0.008551

> volume #20 step 2

> view matrix models
> #21,0.81164,-0.54569,-0.20848,102.92,0.58296,0.73377,0.34891,93.593,-0.037419,-0.40473,0.91367,118.75

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.001924, steps = 168  
shifted from previous position = 6.11  
rotated from previous position = 3.67 degrees  
atoms outside contour = 31841, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.82817980 -0.50275217 -0.24770642 103.03529538  
0.56015748 0.75707781 0.33623917 98.85815419  
0.01848806 -0.41722110 0.90861694 115.64826481  
Axis -0.56660137 -0.20017798 0.79930699  
Axis point -74.66500525 246.54146638 0.00000000  
Rotation angle (degrees) 41.67423262  
Shift along axis 14.26930193  
  

> view matrix models
> #21,0.82818,-0.50275,-0.24771,100.66,0.56016,0.75708,0.33624,97.902,0.018488,-0.41722,0.90862,110.3

> view matrix models
> #21,0.82818,-0.50275,-0.24771,104.22,0.56016,0.75708,0.33624,98.946,0.018488,-0.41722,0.90862,117.31

> view matrix models
> #21,0.82818,-0.50275,-0.24771,109.9,0.56016,0.75708,0.33624,109.11,0.018488,-0.41722,0.90862,107.06

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002675, steps = 120  
shifted from previous position = 1.99  
rotated from previous position = 1.23 degrees  
atoms outside contour = 29931, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.83851991 -0.48474332 -0.24881372 111.22652953  
0.54440667 0.76419901 0.34586305 107.90212248  
0.02248840 -0.42546890 0.90469359 107.92976922  
Axis -0.58682176 -0.20640398 0.78296719  
Axis point -86.74188537 254.67491292 0.00000000  
Rotation angle (degrees) 41.08754675  
Shift along axis -3.03610645  
  

> view matrix models
> #21,0.83852,-0.48474,-0.24881,109.74,0.54441,0.7642,0.34586,111.37,0.022488,-0.42547,0.90469,110.33

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002727, steps = 92  
shifted from previous position = 1.24  
rotated from previous position = 1.58 degrees  
atoms outside contour = 30058, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.83460337 -0.48578601 -0.25970976 110.61845200  
0.55059972 0.74993460 0.36665795 111.60134062  
0.01664803 -0.44901009 0.89337158 111.18517316  
Axis -0.60531499 -0.20508774 0.76911168  
Axis point -86.70274776 251.83065265 0.00000000  
Rotation angle (degrees) 42.35754541  
Shift along axis -4.33325904  
  

> view matrix models
> #21,0.8346,-0.48579,-0.25971,66.828,0.5506,0.74993,0.36666,194.31,0.016648,-0.44901,0.89337,67.074

> view matrix models
> #21,0.8346,-0.48579,-0.25971,14.306,0.5506,0.74993,0.36666,61.933,0.016648,-0.44901,0.89337,58.382

> view matrix models
> #21,0.8346,-0.48579,-0.25971,25.525,0.5506,0.74993,0.36666,87.098,0.016648,-0.44901,0.89337,60.114

> ui mousemode right "rotate selected models"

> view matrix models
> #21,0.81967,-0.45642,-0.34614,25.525,0.53986,0.81756,0.20036,87.098,0.19155,-0.3511,0.91654,60.114

> view matrix models
> #21,0.82395,-0.4586,-0.33285,25.525,0.53951,0.81452,0.21327,87.098,0.17331,-0.3553,0.91854,60.114

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.82395,-0.4586,-0.33285,97.652,0.53951,0.81452,0.21327,104.73,0.17331,-0.3553,0.91854,65.464

> ui mousemode right "rotate selected models"

> view matrix models
> #21,0.81787,-0.44907,-0.35976,97.652,0.53883,0.81707,0.20507,104.73,0.20186,-0.36157,0.91023,65.464

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.81787,-0.44907,-0.35976,21.054,0.53883,0.81707,0.20507,68.749,0.20186,-0.36157,0.91023,59.09

> ui mousemode right "rotate selected models"

> view matrix models
> #21,0.79618,-0.4885,-0.35702,21.054,0.5717,0.80057,0.17956,68.749,0.19811,-0.34707,0.91668,59.09

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.79618,-0.4885,-0.35702,106.87,0.5717,0.80057,0.17956,110.95,0.19811,-0.34707,0.91668,66.307

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.0004233, steps = 76  
shifted from previous position = 1.45  
rotated from previous position = 0.766 degrees  
atoms outside contour = 35261, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.78999621 -0.49169023 -0.36626042 107.50870447  
0.57646978 0.79910282 0.17063785 111.00505859  
0.20877877 -0.34594132 0.91473276 67.61330588  
Axis -0.39178770 -0.43612538 0.81012163  
Axis point -86.38088573 227.05268226 0.00000000  
Rotation angle (degrees) 41.24338750  
Shift along axis -35.75770967  
  

> view matrix models
> #21,0.79,-0.49169,-0.36626,118.57,0.57647,0.7991,0.17064,116.07,0.20878,-0.34594,0.91473,106.07

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002049, steps = 108  
shifted from previous position = 1.32  
rotated from previous position = 0.756 degrees  
atoms outside contour = 31720, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.79273185 -0.49029866 -0.36219254 119.79227147  
0.57625593 0.79651404 0.18301500 116.01770668  
0.19875943 -0.35379742 0.91395956 105.56074046  
Axis -0.40691279 -0.42521098 0.80846621  
Axis point -95.18167048 273.99316421 0.00000000  
Rotation angle (degrees) 41.27059785  
Shift along axis -12.73471847  
  

> view matrix models
> #21,0.79273,-0.4903,-0.36219,113.66,0.57626,0.79651,0.18302,112.53,0.19876,-0.3538,0.91396,115.53

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002353, steps = 104  
shifted from previous position = 1.53  
rotated from previous position = 1.61 degrees  
atoms outside contour = 30785, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.80037391 -0.47683309 -0.36336181 113.76068186  
0.56895194 0.79517786 0.20972806 111.00487350  
0.18893199 -0.37459627 0.90773473 115.54961638  
Axis -0.44295863 -0.41867724 0.79277804  
Axis point -93.07707514 272.65464992 -0.00000000  
Rotation angle (degrees) 41.26707750  
Shift along axis -5.26129181  
  

> view matrix models
> #21,0.80037,-0.47683,-0.36336,108.41,0.56895,0.79518,0.20973,107,0.18893,-0.3746,0.90773,115.1

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002625, steps = 172  
shifted from previous position = 2.38  
rotated from previous position = 0.692 degrees  
atoms outside contour = 30201, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.80000880 -0.48420766 -0.35430052 107.62625180  
0.57283980 0.79203714 0.21102545 108.24832585  
0.17843903 -0.37177966 0.91101010 113.23980291  
Axis -0.44171902 -0.40377338 0.80115627  
Axis point -93.98525980 260.61198280 0.00000000  
Rotation angle (degrees) 41.27708671  
Shift along axis -0.52557742  
  

> save /Users/mansoore.esmaili/Downloads/apo-strucutres.cxs

> view matrix models
> #21,0.80001,-0.48421,-0.3543,110.21,0.57284,0.79204,0.21103,108.87,0.17844,-0.37178,0.91101,111.45

> ui mousemode right "rotate selected models"

> view matrix models
> #21,0.017787,0.19765,-0.98011,110.21,0.74967,-0.65126,-0.11773,108.87,-0.66158,-0.73266,-0.15976,111.45

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002812, steps = 72  
shifted from previous position = 0.578  
rotated from previous position = 0.837 degrees  
atoms outside contour = 29923, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.02745788 0.19716033 -0.97998667 110.00274561  
0.75667923 -0.64471900 -0.10850781 108.70261449  
-0.65320946 -0.73855616 -0.16688975 111.96195647  
Axis -0.69713119 -0.36156999 0.61909228  
Axis point 0.00000000 49.95301658 89.09589150  
Rotation angle (degrees) 153.13521495  
Shift along axis -46.67516513  
  

> view matrix models
> #21,-0.53356,0.80884,-0.24717,110,0.13548,0.37021,0.91902,108.7,0.83484,0.45686,-0.30711,111.96

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002843, steps = 92  
shifted from previous position = 0.982  
rotated from previous position = 2.86 degrees  
atoms outside contour = 29885, contour level = 0.0085515  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.54771418 0.80149370 -0.24003547 109.54951621  
0.09781568 0.34627008 0.93302150 108.45607643  
0.83092796 0.48754987 -0.26805568 111.12686243  
Axis -0.32835515 -0.78940237 -0.51867793  
Axis point 27.71901904 0.00000000 32.48986987  
Rotation angle (degrees) 137.28608620  
Shift along axis -179.22568262  
  

> view matrix models
> #21,-0.35329,0.72687,-0.58894,109.55,0.6554,0.64152,0.39862,108.46,0.66756,-0.24516,-0.70303,111.13

> volume #20 step 4

> volume #20 level 0.0119

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002726, steps = 88  
shifted from previous position = 1.48  
rotated from previous position = 1.63 degrees  
atoms outside contour = 32373, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.35211882 0.73325754 -0.58167492 108.36643969  
0.67572448 0.62918163 0.38409232 109.18422115  
0.64761776 -0.25780585 -0.71702676 110.61374938  
Axis -0.46246748 -0.88566679 -0.04145077  
Axis point 1.90998572 0.00000000 61.48708392  
Rotation angle (degrees) 136.05299237  
Shift along axis -151.40181784  
  

> view matrix models
> #21,-0.35807,0.54363,-0.75912,108.37,0.91293,0.37436,-0.16253,109.18,0.19583,-0.75121,-0.63034,110.61

> view matrix models
> #21,0.48039,0.57826,-0.65942,108.37,0.64361,0.27833,0.71295,109.18,0.59581,-0.76691,-0.23846,110.61

> volume #20 step 2

> view matrix models
> #21,0.12752,0.68592,-0.71642,108.37,0.92412,0.18014,0.33696,109.18,0.36019,-0.70503,-0.6109,110.61

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002786, steps = 76  
shifted from previous position = 1.24  
rotated from previous position = 0.737 degrees  
atoms outside contour = 31677, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.11793145 0.69193384 -0.71226381 108.55481335  
0.92327294 0.18766996 0.33518215 108.02510675  
0.36559439 -0.69714242 -0.61671160 111.00243160  
Axis -0.68352525 -0.71367409 0.15317481  
Axis point -39.49929443 0.00000000 72.45067520  
Rotation angle (degrees) 130.96175346  
Shift along axis -134.29190021  
  

> view matrix models
> #21,0.073553,0.96232,0.26177,108.55,0.082373,0.25572,-0.96324,108.03,-0.99388,0.092412,-0.060461,111

> view matrix models
> #21,0.16993,0.96754,0.18706,108.55,0.54384,0.066225,-0.83657,108.03,-0.82181,0.24389,-0.51493,111

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002809, steps = 112  
shifted from previous position = 1.88  
rotated from previous position = 2.59 degrees  
atoms outside contour = 31689, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.14714557 0.96598376 0.21265829 107.75616212  
0.57329181 0.09191122 -0.81417985 109.66016844  
-0.80603020 0.24171821 -0.54026625 111.47976477  
Axis 0.69520349 0.67070470 -0.25854846  
Axis point 0.00000000 -44.27338088 85.51157625  
Rotation angle (degrees) 130.58721149  
Shift along axis 119.63912928  
  

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.14715,0.96598,0.21266,44.972,0.57329,0.091911,-0.81418,174.04,-0.80603,0.24172,-0.54027,104.06

> ui mousemode right "rotate selected models"

> view matrix models
> #21,-0.60839,0.18991,-0.77058,44.972,0.43899,-0.72836,-0.5261,174.04,-0.66117,-0.65835,0.35976,104.06

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.60839,0.18991,-0.77058,43.98,0.43899,-0.72836,-0.5261,181.45,-0.66117,-0.65835,0.35976,97.486

> ui mousemode right "rotate selected models"

> view matrix models
> #21,-0.48176,0.33936,-0.80792,43.98,0.55185,-0.59869,-0.58055,181.45,-0.68071,-0.72554,0.10114,97.486

> view matrix models
> #21,-0.39711,0.91554,-0.063978,65.604,-0.89732,-0.40195,-0.18237,108.74,-0.19268,-0.01501,0.98115,149.5

> view matrix models
> #21,-0.36799,0.92693,-0.07339,65.604,-0.91097,-0.37522,-0.17127,108.74,-0.18629,0.0038291,0.98249,149.5

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.36799,0.92693,-0.07339,61.51,-0.91097,-0.37522,-0.17127,122.17,-0.18629,0.0038291,0.98249,140.58

> view matrix models
> #21,-0.36799,0.92693,-0.07339,36.245,-0.91097,-0.37522,-0.17127,188.79,-0.18629,0.0038291,0.98249,100.69

> view matrix models
> #21,-0.36799,0.92693,-0.07339,89.026,-0.91097,-0.37522,-0.17127,45.514,-0.18629,0.0038291,0.98249,192.71

> view matrix models
> #21,-0.36799,0.92693,-0.07339,190.19,-0.91097,-0.37522,-0.17127,-8.8583,-0.18629,0.0038291,0.98249,143.2

> ui mousemode right "rotate selected models"

> view matrix models
> #21,-0.48086,0.090352,0.87213,190.19,-0.4214,-0.89608,-0.13951,-8.8583,0.76889,-0.4346,0.46896,143.2

> view matrix models
> #21,-0.39862,0.42118,0.81469,190.19,0.65977,-0.48532,0.57372,-8.8583,0.63703,0.7662,-0.084425,143.2

> view matrix models
> #21,-0.37076,0.61803,0.69324,190.19,0.47377,-0.51615,0.71353,-8.8583,0.7988,0.59298,-0.10144,143.2

> view matrix models
> #21,-0.43466,0.76631,0.47312,190.19,0.60317,-0.14241,0.7848,-8.8583,0.66877,0.62649,-0.40032,143.2

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.43466,0.76631,0.47312,107.87,0.60317,-0.14241,0.7848,108.09,0.66877,0.62649,-0.40032,108.93

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002814, steps = 108  
shifted from previous position = 1.64  
rotated from previous position = 1.86 degrees  
atoms outside contour = 31676, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.45896338 0.75221199 0.47278931 107.96586590  
0.58657509 -0.14313242 0.79714664 109.43288623  
0.66729474 0.64318756 -0.37553628 109.85660738  
Axis -0.51615513 -0.65208867 -0.55530554  
Axis point 10.36161519 0.00000000 8.95857729  
Rotation angle (degrees) 171.42288980  
Shift along axis -188.09106407  
  

> view matrix models
> #21,-0.45896,0.75221,0.47279,78.526,0.58658,-0.14313,0.79715,111.73,0.66729,0.64319,-0.37554,111.01

> view matrix models
> #21,-0.45896,0.75221,0.47279,14.951,0.58658,-0.14313,0.79715,15.77,0.66729,0.64319,-0.37554,78.803

> view matrix models
> #21,-0.45896,0.75221,0.47279,10.354,0.58658,-0.14313,0.79715,33.175,0.66729,0.64319,-0.37554,56.581

> view matrix models
> #21,-0.45896,0.75221,0.47279,4.7671,0.58658,-0.14313,0.79715,43.156,0.66729,0.64319,-0.37554,40.501

> ui mousemode right "rotate selected models"

> view matrix models
> #21,-0.71227,0.60556,0.35492,4.7671,0.49752,0.078879,0.86386,43.156,0.49512,0.79188,-0.35746,40.501

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.71227,0.60556,0.35492,2.9849,0.49752,0.078879,0.86386,39.264,0.49512,0.79188,-0.35746,42.292

> select subtract #21

24 models selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.71227,0.60556,0.35492,110.01,0.49752,0.078879,0.86386,102.19,0.49512,0.79188,-0.35746,101.8

> view matrix models
> #21,-0.71227,0.60556,0.35492,48.907,0.49752,0.078879,0.86386,94.43,0.49512,0.79188,-0.35746,40.276

> view matrix models
> #21,-0.71227,0.60556,0.35492,2.7755,0.49752,0.078879,0.86386,42.4,0.49512,0.79188,-0.35746,38.989

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 27 models selected  

> select subtract #21

26 models selected  

> view matrix models #20,1,0,0,1.04,0,1,0,0.74707,0,0,1,0.44562

> ui mousemode right "rotate selected models"

> view matrix models
> #20,0.99962,0.020136,0.019072,-3.1994,-0.020128,0.9998,-0.0006111,3.0339,-0.01908,0.00022699,0.99982,2.5243

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 25 models selected  

> view matrix models
> #21,-0.84437,0.46413,0.26764,2.7755,0.37733,0.16053,0.91206,42.4,0.38035,0.8711,-0.31067,38.989

> view matrix models
> #21,-0.75729,0.56066,0.33493,2.7755,0.47231,0.11599,0.87377,42.4,0.45104,0.81988,-0.35265,38.989

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.75729,0.56066,0.33493,113.98,0.47231,0.11599,0.87377,103.4,0.45104,0.81988,-0.35265,105.1

> view matrix models
> #21,-0.75729,0.56066,0.33493,3.9702,0.47231,0.11599,0.87377,42.77,0.45104,0.81988,-0.35265,51.864

> view matrix models
> #21,-0.75729,0.56066,0.33493,111.45,0.47231,0.11599,0.87377,110.37,0.45104,0.81988,-0.35265,109.86

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002824, steps = 88  
shifted from previous position = 1.46  
rotated from previous position = 1.22 degrees  
atoms outside contour = 31640, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.76885481 0.54125205 0.34045337 109.29492624  
0.47541518 0.12782559 0.87042577 108.79126538  
0.42760108 0.83108774 -0.35559876 109.00487002  
Axis -0.33886043 -0.75069625 -0.56712322  
Axis point 29.96537439 0.00000000 14.33955266  
Rotation angle (degrees) 176.67241971  
Shift along axis -180.52411369  
  

> view matrix models
> #21,-0.75083,0.55947,0.35107,110.48,0.49053,0.1164,0.86361,110.1,0.4423,0.82064,-0.36183,111.33

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002751, steps = 64  
shifted from previous position = 1.15  
rotated from previous position = 1.23 degrees  
atoms outside contour = 31650, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.76172721 0.55463689 0.33488740 109.16277582  
0.48183446 0.13939591 0.86510365 109.39364903  
0.43313646 0.82033328 -0.37342483 109.77058240  
Axis -0.34380348 -0.75448058 -0.55906907  
Axis point 29.47697952 0.00000000 15.36545135  
Rotation angle (degrees) 176.26680784  
Shift along axis -181.43526320  
  

> volume #20 step 1

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002751, steps = 60  
shifted from previous position = 0.00214  
rotated from previous position = 0.00553 degrees  
atoms outside contour = 30555, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.76176691 0.55459024 0.33487434 109.16102246  
0.48183816 0.13947668 0.86508857 109.39427964  
0.43306252 0.82035109 -0.37347146 109.76952585  
Axis -0.34377637 -0.75450776 -0.55904905  
Axis point 29.47885695 0.00000000 15.36699068  
Rotation angle (degrees) 176.26925931  
Shift along axis -181.43236254  
  

> view matrix models
> #21,-0.74351,0.57283,0.34504,110.45,0.49681,0.12778,0.8584,109.96,0.44763,0.80965,-0.3796,109.98

> ui mousemode right "rotate selected models"

> view matrix models
> #21,-0.53974,-0.75311,-0.37618,110.45,0.39779,0.16566,-0.9024,109.96,0.74192,-0.6367,0.21017,109.98

> view matrix models
> #21,-0.46284,-0.79736,-0.3873,110.45,0.54942,0.084836,-0.83123,109.96,0.69564,-0.59752,0.39882,109.98

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002824, steps = 100  
shifted from previous position = 1.05  
rotated from previous position = 2.07 degrees  
atoms outside contour = 30557, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.49129722 -0.76966822 -0.40772279 109.31805237  
0.55827477 0.08103918 -0.82568876 109.82370812  
0.66854791 -0.63327994 0.38987203 110.39718362  
Axis 0.11185780 -0.62569518 0.77200608  
Axis point -0.47949853 138.78502451 0.00000000  
Rotation angle (degrees) 120.67668672  
Shift along axis 28.73920863  
  

> view matrix models
> #21,-0.53422,-0.78332,-0.31783,110.39,0.49792,0.012258,-0.86714,110.57,0.68314,-0.6215,0.38348,110.84

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.53422,-0.78332,-0.31783,99.679,0.49792,0.012258,-0.86714,81.431,0.68314,-0.6215,0.38348,9.9472

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 27 models selected  

> select subtract #21

26 models selected  

> view matrix models
> #20,0.99962,0.020136,0.019072,-10.811,-0.020128,0.9998,-0.0006111,12.745,-0.01908,0.00022699,0.99982,21.083

> ui mousemode right "rotate selected models"

> view matrix models
> #20,-0.25641,-0.43552,0.86289,83.959,0.54653,-0.80165,-0.2422,173.97,0.79722,0.40949,0.44358,-52.007

> view matrix models
> #20,-0.41887,0.064112,0.90578,42.457,0.13166,-0.98268,0.13044,198.35,0.89845,0.17389,0.40317,-32.921

> view matrix models
> #20,-0.54259,0.45669,0.705,35.022,-0.82731,-0.43587,-0.35437,296.3,0.14545,-0.77553,0.61432,129.93

> volume #20 step 4

> view matrix models
> #20,-0.67553,0.63281,0.37843,65.969,-0.60628,-0.18464,-0.77352,290.5,-0.41962,-0.75197,0.50839,200.63

> view matrix models
> #20,0.62855,0.69633,0.34649,-79.885,0.089348,0.37789,-0.92153,169.27,-0.77262,0.61018,0.17531,126.8

> volume #20 step 2

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 25 models selected  

> view matrix models
> #21,-0.59473,-0.71479,-0.36792,99.679,0.37878,0.15452,-0.9125,81.431,0.7091,-0.68205,0.17885,9.9472

> ui mousemode right "translate selected models"

> view matrix models
> #21,-0.59473,-0.71479,-0.36792,103.8,0.37878,0.15452,-0.9125,118.72,0.7091,-0.68205,0.17885,126.15

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002925, steps = 120  
shifted from previous position = 2.48  
rotated from previous position = 4.46 degrees  
atoms outside contour = 31559, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.87883112 0.12549294 -0.46033399 109.26802828  
0.10969477 -0.88580701 -0.45090242 109.43374215  
-0.46435215 -0.44676331 0.76470885 109.47400692  
Axis 0.24610534 0.23891380 -0.93933613  
Axis point 69.24661868 68.36687531 -0.00000000  
Rotation angle (degrees) 179.51818145  
Shift along axis -49.79621406  
  

> ui mousemode right "translate selected atoms"

[Repeated 1 time(s)]

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002917, steps = 100  
shifted from previous position = 2.81  
rotated from previous position = 1.39 degrees  
atoms outside contour = 31521, contour level = 0.011903  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88655869 0.10544248 -0.45043931 111.19880591  
0.12313225 -0.88477126 -0.44946442 107.38964790  
-0.44592839 -0.45394020 0.77141828 109.62419876  
Axis -0.23811724 -0.23998662 0.94111987  
Axis point 69.16905517 67.97986227 -0.00000000  
Rotation angle (degrees) 179.46151171  
Shift along axis 50.91908002  
  

> save "/Users/mansoore.esmaili/Downloads/Apoferritin human copy/apo-map
> overlapped.cxs"

No map chosen to save  

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 27 models selected  

> save "/Users/mansoore.esmaili/Downloads/Apoferritin human
> copy/overlapped.pdb"

Chain IDs longer than 2 characters; truncating  

Average map value = 0.001131 for 37720 atoms, 34404 outside contour  
Opened 2iu2-assembly1.cif map 5 as #22, grid size 92,92,92, pixel 1.67, shown
at level 0.138, step 1, values float32  
Correlation = 0.1224, Correlation about mean = 0.004391, Overlap = 60.87  
  
Opened 2iu2-assembly1.cif map 5 as #22, grid size 92,92,92, pixel 1.67, shown
at level 0.138, step 1, values float32  

> fitmap #21 inMap #20 resolution 5

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.0264, correlation about mean = 0.005959, overlap = 13.4  
steps = 128, shift = 3.31, angle = 1.79 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88008316 0.08925007 -0.46635615 111.53456905  
0.15198846 -0.87754559 -0.45476723 109.53279968  
-0.44983679 -0.47111373 0.75874812 106.66497628  
Axis -0.24432618 -0.24690975 0.93773146  
Axis point 68.58522708 69.90378682 0.00000000  
Rotation angle (degrees) 178.08297173  
Shift along axis 45.72757198  
  
Average map value = 0.0003282 for 37720 atoms, 36034 outside contour  

> fitmap #21 inMap #20 resolution 5

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.0264, correlation about mean = 0.005932, overlap = 13.4  
steps = 80, shift = 0.00741, angle = 0.00369 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88008065 0.08921608 -0.46636739 111.53475145  
0.15199554 -0.87757389 -0.45471025 109.53804918  
-0.44983931 -0.47106746 0.75877536 106.66890476  
Axis -0.24432805 -0.24688040 0.93773870  
Axis point 68.58509142 69.90586675 0.00000000  
Rotation angle (degrees) 178.08173107  
Shift along axis 45.73369405  
  
Average map value = 0.000329 for 37720 atoms, 36032 outside contour  

> fitmap #21 inMap #20 resolution 5

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.02639, correlation about mean = 0.00601, overlap = 13.39  
steps = 80, shift = 0.0132, angle = 0.0202 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88009045 0.08943943 -0.46630611 111.53913948  
0.15191711 -0.87742816 -0.45501758 109.53022351  
-0.44984662 -0.47129651 0.75862877 106.66565927  
Axis -0.24432315 -0.24703304 0.93769978  
Axis point 68.59231590 69.90560120 0.00000000  
Rotation angle (degrees) 178.09087610  
Shift along axis 45.71118764  
  
Average map value = 0.0003261 for 37720 atoms, 36035 outside contour  

> fitmap #21 inMap #20 resolution 5

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.02639, correlation about mean = 0.006022, overlap = 13.39  
steps = 136, shift = 0.00837, angle = 0.0138 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88010413 0.08931564 -0.46630400 111.53926546  
0.15191761 -0.87753443 -0.45481245 109.52357245  
-0.44981968 -0.47112211 0.75875306 106.67087757  
Axis -0.24430705 -0.24692338 0.93773286  
Axis point 68.58964357 69.89836987 -0.00000000  
Rotation angle (degrees) 178.08714414  
Shift along axis 45.73502684  
  
Average map value = 0.0003277 for 37720 atoms, 36039 outside contour  

> fitmap #21 inMap #20 resolution 5

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.0264, correlation about mean = 0.005949, overlap = 13.4  
steps = 80, shift = 0.0147, angle = 0.00862 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88005117 0.08924631 -0.46641722 111.54105321  
0.15200249 -0.87756722 -0.45472080 109.53993015  
-0.44989462 -0.47107416 0.75873840 106.66692078  
Axis -0.24435861 -0.24688754 0.93772886  
Axis point 68.59024535 69.90676522 0.00000000  
Rotation angle (degrees) 178.08242243  
Shift along axis 45.72458905  
  
Average map value = 0.0003288 for 37720 atoms, 36031 outside contour  
Opened 2iu2-assembly1.cif map 5 as #22, grid size 92,92,92, pixel 1.67, shown
at level 0.138, step 1, values float32  

> fitmap #21 inMap #20 resolution 5 metric correlation

Fit map 2iu2-assembly1.cif map 5 in map emd_20026.map using 138432 points  
correlation = 0.009695, correlation about mean = 0.001835, overlap = 4.276  
steps = 92, shift = 0.635, angle = 1.08 degrees  
  
Position of 2iu2-assembly1.cif map 5 (#22) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.88485242 0.08706934 -0.45766267 111.31099460  
0.15648702 -0.86975081 -0.46802279 108.77993289  
-0.43880291 -0.48574937 0.75597589 107.01246268  
Axis -0.23927029 -0.25456565 0.93698776  
Axis point 68.12777558 70.13602626 0.00000000  
Rotation angle (degrees) 177.87710657  
Shift along axis 45.94431963  
  
Average map value = 2.064e-05 for 37720 atoms, 36615 outside contour  

> volume #20 step 1

> fitmap #20 #21 search 100 radius 5

Missing required "in_map" argument  

> fitmap #20 #21 search 100 radius 5

Missing required "in_map" argument  

> fitin_map #20 #21 search 100 radius 5

Unknown command: fitin_map #20 #21 search 100 radius 5  

> fit_in_map #20 #21 search 100 radius 5

Unknown command: fit_in_map #20 #21 search 100 radius 5  

> fit_inmap #20 #21 search 100 radius 5

Unknown command: fit_inmap #20 #21 search 100 radius 5  

> fit_map #20 #21 search 100 radius 5

Unknown command: fit_map #20 #21 search 100 radius 5  

> fit_map #20 #21 search100 radius 5

Unknown command: fit_map #20 #21 search100 radius 5  

> fitmap #20 #21 search100 radius 5

Expected a keyword  

> show #!22 models

> hide #!22 models

> show #!22 models

> hide #!22 models

> fitmap #20#21 search 100 radius 5

Missing required "in_map" argument  

> fitmap #20 inMap map #21 search 100 radius 5

Invalid "inMap" argument: invalid density map specifier  
Must specify one map, got 0  

> fitmap #21 inMap #20 search 100 radius 5

Found 0 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (0 of 100).  
  
Found 0 fits.  

Populating font family aliases took 60 ms. Replace uses of missing font family
"Courier" with one that exists to avoid this cost.  

> fitmap #21 inMap #20 search 100 radius 5

Found 0 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (0 of 100).  
  
Found 0 fits.  

> show #!22 models

> volume sel hide

> show #!20 models

> hide #!22 models

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 25 models selected  

> select add #22

37720 atoms, 34680 bonds, 7864 residues, 27 models selected  

> show #!22 models

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 29 models selected  

> close #20

> close #21

> close #22

> open "/Users/mansoore.esmaili/Documents/Apoferritin human/emd_20026.map"

Opened emd_20026.map as #20, grid size 336,336,336, pixel 0.65, shown at level
0.0202, step 2, values float32  

> open /Users/mansoore.esmaili/Downloads/2iu2-assembly1.cif

Summary of feedback from opening
/Users/mansoore.esmaili/Downloads/2iu2-assembly1.cif  
---  
warnings | Unable to fetch template for 'GOL': will connect using distance criteria  
Unable to fetch template for 'ZN': will connect using distance criteria  
notes | Combining 4 symmetry atoms into HOH /A-15:2150 O  
Combining 4 symmetry atoms into ZN /A-15:214 ZN  
Combining 2 symmetry atoms into HOH /A-15:2036 O  
Combining 2 symmetry atoms into HOH /A-22:2036 O  
Combining 2 symmetry atoms into HOH /A-12:2036 O  
Combining 2 symmetry atoms into HOH /A-18:2036 O  
Combining 3 symmetry atoms into HOH /A-19:2152 O  
Combining 3 symmetry atoms into HOH /A-10:2152 O  
Combining 3 symmetry atoms into HOH /A-21:2152 O  
Combining 3 symmetry atoms into HOH /A-14:2152 O  
Combining 3 symmetry atoms into ZN /A-19:211 ZN  
3 messages similar to the above omitted  
Combining 4 symmetry atoms into HOH /A-2:2150 O  
Combining 4 symmetry atoms into ZN /A-2:214 ZN  
Combining 2 symmetry atoms into HOH /A-9:2036 O  
Combining 2 symmetry atoms into HOH /A-3:2036 O  
Combining 4 symmetry atoms into HOH /A-8:2150 O  
Combining 4 symmetry atoms into ZN /A-8:214 ZN  
Combining 4 symmetry atoms into ZN /A-3:214 ZN  
Combining 4 symmetry atoms into HOH /A-3:2150 O  
Combining 2 symmetry atoms into HOH /A-16:2036 O  
Combining 2 symmetry atoms into HOH /A-7:2036 O  
Combining 4 symmetry atoms into ZN /A-7:214 ZN  
Combining 4 symmetry atoms into HOH /A-7:2150 O  
Combining 3 symmetry atoms into ZN /A-6:211 ZN  
Combining 3 symmetry atoms into ZN /A:211 ZN  
Combining 3 symmetry atoms into ZN /A-11:211 ZN  
Combining 3 symmetry atoms into ZN /A-4:211 ZN  
Combining 3 symmetry atoms into HOH /A-6:2152 O  
3 messages similar to the above omitted  
Combining 2 symmetry atoms into HOH /A-2:2036 O  
Combining 2 symmetry atoms into HOH /A-8:2036 O  
Combining 2 symmetry atoms into HOH /A:2036 O  
Combining 2 symmetry atoms into HOH /A-5:2036 O  
Combining 4 symmetry atoms into ZN /A:214 ZN  
Combining 4 symmetry atoms into HOH /A:2150 O  
  
2iu2-assembly1.cif title:  
Recombinant human H ferritin, K86Q, E27D and E107D mutant, soaked with Zn ions
[more info...]  
  
Chain information for 2iu2-assembly1.cif #21  
---  
Chain | Description  
A A-10 A-11 A-12 A-13 A-14 A-15 A-16 A-17 A-18 A-19 A-2 A-20 A-21 A-22 A-23 A-24 A-3 A-4 A-5 A-6 A-7 A-8 A-9 | FERRITIN HEAVY CHAIN  
  
Non-standard residues in 2iu2-assembly1.cif #21  
---  
GOL — glycerol (glycerin; propane-1,2,3-triol)  
ZN — zinc ion  
  

> hide #21 surfaces

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> show sel cartoons

> fitmap #21 inMap #20 search 100 radius 5

Found 0 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (0 of 100).  
  
Found 0 fits.  

> ui tool show "Fit to Segments"

Density map not found or not selected  

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  
Density map not found or not selected  

> surface dust #20 size 6.5

Density map not found or not selected  
[Repeated 1 time(s)]

> ui tool show "Fit in Map"

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.0002941, steps = 88  
shifted from previous position = 1.76  
rotated from previous position = 1.58 degrees  
atoms outside contour = 37071, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99985859 -0.00942021 0.01393045 1.39229258  
0.00972095 0.99971767 -0.02168138 -1.01440302  
-0.01372227 0.02181373 0.99966787 -2.06915755  
Axis 0.79109724 0.50295290 0.34814298  
Axis point 0.00000000 92.10997178 -44.99098250  
Rotation angle (degrees) 1.57528080  
Shift along axis -0.12912079  
  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.003626, steps = 84  
shifted from previous position = 2.75  
rotated from previous position = 1.7 degrees  
atoms outside contour = 34044, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
1.00000000 -0.00008330 -0.00001540 1.62821784  
0.00008334 0.99999650 0.00264579 0.04418290  
0.00001518 -0.00264579 0.99999650 -0.42348437  
Axis -0.99948788 -0.00577727 0.03147373  
Axis point 0.00000000 -140.52139520 -13.30222561  
Rotation angle (degrees) 0.15167055  
Shift along axis -1.64096789  
  

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.003401, steps = 72  
shifted from previous position = 1.31  
rotated from previous position = 1.44 degrees  
atoms outside contour = 34236, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.99968508 0.00108606 0.02507094 -2.36633565  
-0.00118825 0.99999105 0.00406142 0.23843200  
-0.02506631 -0.00408994 0.99967742 1.83627001  
Axis -0.16031328 0.98605222 -0.04472887  
Axis point 73.02375441 0.00000000 91.89892338  
Rotation angle (degrees) 1.45680044  
Shift along axis 0.53232715  
  

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.99969,0.0010861,0.025071,-41.156,-0.0011882,0.99999,0.0040614,-72.51,-0.025066,-0.0040899,0.99968,-16.052

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> view matrix models
> #20,1,0,0,5.7977,0,1,0,10.628,0,0,1,6.7691,#21,0.99969,0.0010861,0.025071,-35.358,-0.0011882,0.99999,0.0040614,-61.882,-0.025066,-0.0040899,0.99968,-9.2826

> ui mousemode right "rotate selected models"

> view matrix models
> #20,-0.51131,0.73107,0.45177,46.93,0.85924,0.42492,0.28486,-55.865,0.016283,0.53383,-0.84544,152.66,#21,-0.52334,0.72866,0.44177,7.7117,0.85133,0.42469,0.30803,-126.61,0.036836,0.5373,-0.84259,126.85

> view matrix models
> #20,-0.27352,-0.89557,-0.35091,221.02,-0.50153,0.44409,-0.74246,168.27,0.82076,-0.027091,-0.57062,91.782,#21,-0.26358,-0.89443,-0.36129,302.84,-0.48329,0.44658,-0.75299,168.63,0.83484,-0.023866,-0.54997,69.126

> select subtract #21

2 models selected  

> view matrix models
> #20,-0.29022,-0.84341,-0.45215,228.2,-0.48762,0.53688,-0.68847,150.72,0.82341,0.020672,-0.56707,85.89

> ui mousemode right "translate selected models"

> view matrix models
> #20,-0.29022,-0.84341,-0.45215,206.3,-0.48762,0.53688,-0.68847,112.59,0.82341,0.020672,-0.56707,26.647

> view matrix models
> #20,-0.29022,-0.84341,-0.45215,206.77,-0.48762,0.53688,-0.68847,113.16,0.82341,0.020672,-0.56707,32.164

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.26358,-0.89443,-0.36129,337.37,-0.48329,0.44658,-0.75299,232.74,0.83484,-0.023866,-0.54997,95.694

> select subtract #21

Nothing selected  

> select add #20

2 models selected  

> view matrix models
> #20,-0.29022,-0.84341,-0.45215,210.71,-0.48762,0.53688,-0.68847,120.32,0.82341,0.020672,-0.56707,37.81

> view matrix models
> #20,-0.29022,-0.84341,-0.45215,216.14,-0.48762,0.53688,-0.68847,139.85,0.82341,0.020672,-0.56707,34.052

> ui mousemode right "rotate selected models"

> view matrix models
> #20,0.40993,-0.65631,-0.63341,139.04,-0.54597,0.37974,-0.7468,169.75,0.73066,0.65197,-0.20266,-64.552

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> select subtract #21

Nothing selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.37794,0.92528,-0.031916,123.11,-0.92458,-0.37541,0.064886,275.57,0.048056,0.054032,0.99738,0.94676

> select subtract #21

Nothing selected  

> select add #20

2 models selected  

> view matrix models
> #20,0.36814,-0.65289,-0.66198,146.35,-0.56401,0.40921,-0.71725,165.28,0.73917,0.63741,-0.21759,-62.26

> ui mousemode right "translate selected models"

> view matrix models
> #20,0.36814,-0.65289,-0.66198,171.57,-0.56401,0.40921,-0.71725,279.67,0.73917,0.63741,-0.21759,-9.0002

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #21

2 models selected  

> view matrix models
> #20,0.36814,-0.65289,-0.66198,267.86,-0.56401,0.40921,-0.71725,211.82,0.73917,0.63741,-0.21759,-10.923

> view matrix models
> #20,0.36814,-0.65289,-0.66198,284.39,-0.56401,0.40921,-0.71725,231.84,0.73917,0.63741,-0.21759,-2.9546

> view matrix models
> #20,0.36814,-0.65289,-0.66198,275.99,-0.56401,0.40921,-0.71725,237.82,0.73917,0.63741,-0.21759,-1.3433

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002816, steps = 128  
shifted from previous position = 2.45  
rotated from previous position = 4.64 degrees  
atoms outside contour = 34553, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.38560624 0.59303698 0.70683447 -73.59498026  
-0.04077410 -0.75437933 0.65517120 118.78531643  
0.92176206 -0.28145864 -0.26671283 66.76249793  
Axis -0.81363496 -0.18670407 -0.55058128  
Axis point 0.00000000 80.92882392 35.13337018  
Rotation angle (degrees) 144.85948958  
Shift along axis 0.94356564  
  

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002816, steps = 40  
shifted from previous position = 0.00184  
rotated from previous position = 0.000392 degrees  
atoms outside contour = 34555, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.38560021 0.59303923 0.70683587 -73.59608985  
-0.04077562 -0.75437849 0.65517208 118.78587250  
0.92176452 -0.28145616 -0.26670696 66.76238266  
Axis -0.81363288 -0.18670483 -0.55058409  
Axis point 0.00000000 80.92935647 35.13367161  
Rotation angle (degrees) 144.85945543  
Shift along axis 0.94399733  
  

> volume #20 step 1

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002816, steps = 60  
shifted from previous position = 0.0099  
rotated from previous position = 0.00907 degrees  
atoms outside contour = 33138, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.38570515 0.59294507 0.70685761 -73.60701560  
-0.04074376 -0.75444578 0.65509656 118.80105979  
0.92172202 -0.28147416 -0.26683481 66.78967885  
Axis -0.81367351 -0.18666981 -0.55053592  
Axis point 0.00000000 80.93921284 35.14890255  
Rotation angle (degrees) 144.86394549  
Shift along axis 0.94539053  
  

> view matrix models
> #20,0.36814,-0.65289,-0.66198,175.65,-0.56401,0.40921,-0.71725,111.97,0.73917,0.63741,-0.21759,54.719

> ui mousemode right "rotate selected models"

> view matrix models
> #20,0.16292,-0.56568,-0.80837,204.52,-0.65538,0.55039,-0.51724,84.69,0.73751,0.61406,-0.28107,64.38

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.22636,0.93421,-0.2757,131.47,-0.8344,-0.33201,-0.43994,317.95,-0.50253,0.13046,0.85466,71.46

> view matrix models
> #21,-0.45054,0.89201,0.036468,125.59,-0.88643,-0.45183,0.10045,275.74,0.10608,0.012932,0.99427,1.245

> view matrix models
> #21,-0.19407,0.93482,-0.2974,130.28,-0.80968,-0.32381,-0.48945,319.92,-0.55385,0.14581,0.81975,79.402

> view matrix models
> #21,-0.76942,0.61705,-0.16507,211.88,-0.63176,-0.77327,0.054185,286.49,-0.094208,0.14597,0.98479,10.422

> view matrix models
> #21,-0.15191,0.90401,0.39961,50.911,-0.91788,-0.279,0.28224,240.82,0.36664,-0.32392,0.87215,21.444

> view matrix models
> #21,0.4397,0.88484,0.154,15.379,-0.74794,0.26581,0.60822,128.8,0.49724,-0.38262,0.77869,23.676

> view matrix models
> #21,0.90454,0.31403,-0.28843,73.384,0.07301,0.55239,0.83038,-16.165,0.42009,-0.77217,0.47673,106.6

> view matrix models
> #21,0.94001,-0.032127,-0.33964,111.36,0.27647,0.65502,0.70322,-35.013,0.19988,-0.75493,0.6246,112.45

> view matrix models
> #21,0.70536,-0.70861,-0.018431,171.84,0.66523,0.65276,0.36246,-39.38,-0.24481,-0.26793,0.93182,76.108

> view matrix models
> #21,0.71127,-0.70253,0.023443,165.87,0.65683,0.67614,0.33378,-37.69,-0.25034,-0.22201,0.94236,70.742

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.71127,-0.70253,0.023443,66.516,0.65683,0.67614,0.33378,-162.21,-0.25034,-0.22201,0.94236,126.45

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.00267, steps = 88  
shifted from previous position = 0.984  
rotated from previous position = 0.879 degrees  
atoms outside contour = 33272, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.50491483 -0.72093671 0.47466965 187.14256037  
-0.18482640 0.62746028 0.75639461 -21.00915134  
-0.84314899 0.29418337 -0.45006214 220.05913659  
Axis -0.30898658 0.88095712 0.35838785  
Axis point 145.80333704 0.00000000 66.35378409  
Rotation angle (degrees) 131.58713926  
Shift along axis 2.53382061  
  

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,0.70387,-0.71021,0.013273,67.377,0.6653,0.66568,0.33801,-163.41,-0.2489,-0.22909,0.94105,128.1

> view matrix models
> #21,0.70387,-0.71021,0.013273,151.84,0.6653,0.66568,0.33801,-85.424,-0.2489,-0.22909,0.94105,165.57

> view matrix models
> #21,0.70387,-0.71021,0.013273,149.22,0.6653,0.66568,0.33801,-89.75,-0.2489,-0.22909,0.94105,162.86

> view matrix models
> #21,0.70387,-0.71021,0.013273,147.32,0.6653,0.66568,0.33801,-81.287,-0.2489,-0.22909,0.94105,170.3

> select subtract #21

Nothing selected  

> select add #20

2 models selected  

> view matrix models
> #20,0.16292,-0.56568,-0.80837,181.67,-0.65538,0.55039,-0.51724,76.054,0.73751,0.61406,-0.28107,64.343

> ui mousemode right "rotate selected models"

> view matrix models
> #20,-0.13494,-0.23216,0.96327,-15.69,0.51926,0.81141,0.2683,-166.5,-0.8439,0.53639,0.011054,213.61

> view matrix models
> #20,-0.19115,0.55678,0.80837,-78.788,0.77869,0.58741,-0.22046,-117,-0.59759,0.58733,-0.54583,241.97

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models
> #21,0.70387,-0.71021,0.013273,42.503,0.6653,0.66568,0.33801,-172.09,-0.2489,-0.22909,0.94105,128.64

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002744, steps = 96  
shifted from previous position = 1.17  
rotated from previous position = 2.15 degrees  
atoms outside contour = 33203, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.52450102 0.78368220 -0.33277754 5.67184666  
0.64100298 -0.10622294 0.76015253 -34.97377029  
0.56036940 -0.61201217 -0.55805667 171.32167483  
Axis -0.83493296 -0.54346087 -0.08681726  
Axis point 0.00000000 34.35229708 96.43124952  
Rotation angle (degrees) 124.74250609  
Shift along axis -0.60241496  
  

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.002744, steps = 44  
shifted from previous position = 0.00971  
rotated from previous position = 0.00798 degrees  
atoms outside contour = 33211, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.52441002 0.78371053 -0.33285424 5.68046739  
0.64102850 -0.10608852 0.76014978 -34.99193545  
0.56042537 -0.61199921 -0.55801467 171.31600553  
Axis -0.83489331 -0.54352201 -0.08681584  
Axis point 0.00000000 34.34443849 96.43390514  
Rotation angle (degrees) 124.73952826  
Shift along axis -0.59664072  
  

> fitmap #21 inMap #20 search 100 radius 5

Found 100 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).  
  
Average map values and times found:  
0.003825 (1), 0.003141 (1), 0.003076 (1), 0.003007 (1), 0.002904 (1), 0.002901
(1), 0.002874 (1), 0.002872 (1), 0.002862 (1), 0.002856 (1), 0.002854 (1),
0.002843 (1), 0.002842 (1), 0.002841 (1), 0.002839 (1), 0.002836 (1), 0.002834
(1), 0.002826 (1), 0.002824 (1), 0.002817 (1), 0.002815 (1), 0.002815 (1),
0.002804 (1), 0.0028 (1), 0.002799 (1), 0.002799 (1), 0.002792 (1), 0.002787
(1), 0.002785 (1), 0.00278 (1), 0.002775 (1), 0.002773 (1), 0.00277 (1),
0.00277 (1), 0.002766 (1), 0.002765 (1), 0.002762 (1), 0.00276 (1), 0.002757
(1), 0.002756 (1), 0.002755 (1), 0.002755 (1), 0.002754 (1), 0.002754 (1),
0.002743 (1), 0.00274 (1), 0.002738 (1), 0.002732 (1), 0.002731 (1), 0.002729
(1), 0.002727 (1), 0.002726 (1), 0.002724 (1), 0.002717 (1), 0.00271 (1),
0.00271 (1), 0.002705 (1), 0.002704 (1), 0.002703 (1), 0.002702 (1), 0.002698
(1), 0.002696 (1), 0.002695 (1), 0.002694 (1), 0.002694 (1), 0.002693 (1),
0.002687 (1), 0.002686 (1), 0.002681 (1), 0.00268 (1), 0.002679 (1), 0.002677
(1), 0.002674 (1), 0.002672 (1), 0.002666 (1), 0.002664 (1), 0.00266 (1),
0.002654 (1), 0.00265 (1), 0.002648 (1), 0.002645 (1), 0.002643 (1), 0.002631
(1), 0.002625 (1), 0.002623 (1), 0.002617 (1), 0.002611 (1), 0.002603 (1),
0.0026 (1), 0.002596 (1), 0.002587 (1), 0.002582 (1), 0.002572 (1), 0.002569
(1), 0.002565 (1), 0.002554 (1), 0.002535 (1), 0.002533 (1), 0.002488 (1),
0.002447 (1)  
  
Best fit found:  
Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.003825, steps = 76  
shifted from previous position = 1.64  
rotated from previous position = 0.517 degrees  
atoms outside contour = 32261, contour level = 0.020173  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.00000182 -1.00000001 -0.00000203 209.59479165  
-0.99710140 0.00000164 0.07608457 210.24619342  
-0.07608461 0.00000216 -0.99710137 229.07930330  
Axis -0.70684954 0.70685112 0.02692973  
Axis point 214.28040697 0.00000000 106.45298328  
Rotation angle (degrees) 176.91496727  
Shift along axis 6.62982028  
  
Found 100 fits.  

> select subtract #21

2 models selected  

> select subtract #20

Nothing selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.61667,0.19115,-0.76367,177.76,-0.56893,-0.77869,0.26451,120.76,-0.5441,0.59759,0.58894,114.32

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> color #21 #1d854dff

> color #21 #1d854d59

> color #21 #1d854d7e

> color #21 #1d854d80

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> view matrix models
> #21,-0.61667,0.19115,-0.76367,183.71,-0.56893,-0.77869,0.26451,121.29,-0.5441,0.59759,0.58894,113.8

> fitmap #21 inMap #20 search 100 radius 5

Found 100 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).  
  
Average map values and times found:  
0.03218 (1), 0.002965 (1), 0.002935 (1), 0.002921 (1), 0.002901 (1), 0.002901
(1), 0.002897 (1), 0.002884 (1), 0.002873 (1), 0.002872 (1), 0.002872 (1),
0.002869 (1), 0.002859 (1), 0.002857 (1), 0.002853 (1), 0.00285 (1), 0.002839
(1), 0.002839 (1), 0.002838 (1), 0.00283 (1), 0.002829 (1), 0.002829 (1),
0.002823 (1), 0.002821 (1), 0.00282 (1), 0.002815 (1), 0.002811 (1), 0.00281
(1), 0.002808 (1), 0.002807 (1), 0.002805 (1), 0.002804 (1), 0.002803 (1),
0.002801 (1), 0.002801 (1), 0.0028 (1), 0.002792 (1), 0.002791 (1), 0.002789
(1), 0.002788 (1), 0.002788 (1), 0.002784 (1), 0.002781 (1), 0.002778 (1),
0.002775 (1), 0.002765 (1), 0.002754 (1), 0.002748 (1), 0.00274 (1), 0.002739
(1), 0.002738 (1), 0.002738 (1), 0.002731 (1), 0.002731 (1), 0.00273 (1),
0.002729 (1), 0.002728 (1), 0.002728 (1), 0.002727 (1), 0.002726 (1), 0.002722
(1), 0.002721 (1), 0.002714 (1), 0.002711 (1), 0.002709 (1), 0.002705 (1),
0.002699 (1), 0.002698 (1), 0.002698 (1), 0.002697 (1), 0.002696 (1), 0.002696
(1), 0.002695 (1), 0.002693 (1), 0.002693 (1), 0.00269 (1), 0.002688 (1),
0.002682 (1), 0.002682 (1), 0.002679 (1), 0.002679 (1), 0.002673 (1), 0.002666
(1), 0.002659 (1), 0.002659 (1), 0.002645 (1), 0.002644 (1), 0.002631 (1),
0.002626 (1), 0.002619 (1), 0.002603 (1), 0.002599 (1), 0.002597 (1), 0.002597
(1), 0.002568 (1), 0.002563 (1), 0.002563 (1), 0.002556 (1), 0.002542 (1),
0.002528 (1)  
  
Best fit found:  
Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 100  
shifted from previous position = 3.05  
rotated from previous position = 4.92 degrees  
atoms outside contour = 10459, contour level = 0.020173  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.00001947 -1.00000007 0.00001105 213.59999218  
1.00000008 0.00001949 0.00006135 -0.68975262  
-0.00006132 0.00001104 1.00000004 -2.63538111  
Axis -0.00002515 0.00003618 1.00000000  
Axis point 107.14479821 106.45721708 0.00000000  
Rotation angle (degrees) 89.99888267  
Shift along axis -2.64077888  
  
Found 100 fits.  

> fitmap #21 inMap #20 search 100 radius 5

Found 100 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).  
  
Average map values and times found:  
0.03218 (1), 0.002981 (1), 0.002917 (1), 0.002868 (1), 0.002858 (1), 0.002857
(1), 0.002851 (1), 0.002851 (1), 0.00285 (1), 0.002839 (1), 0.002821 (1),
0.002821 (1), 0.002819 (1), 0.002819 (1), 0.00281 (1), 0.002805 (1), 0.002792
(1), 0.002784 (1), 0.00278 (1), 0.002776 (1), 0.002776 (1), 0.002767 (1),
0.002754 (1), 0.002751 (1), 0.00275 (1), 0.002749 (1), 0.002744 (1), 0.002743
(1), 0.002741 (1), 0.00274 (1), 0.00274 (1), 0.002735 (1), 0.002734 (1),
0.002731 (1), 0.002726 (1), 0.002726 (1), 0.002725 (1), 0.002719 (1), 0.002714
(1), 0.002714 (1), 0.002699 (1), 0.002697 (1), 0.002691 (1), 0.00269 (1),
0.002684 (1), 0.002682 (1), 0.002677 (1), 0.002676 (1), 0.002674 (1), 0.002672
(1), 0.002669 (1), 0.002668 (1), 0.002666 (1), 0.002666 (1), 0.002665 (1),
0.002663 (1), 0.002661 (1), 0.002652 (1), 0.002648 (1), 0.002647 (1), 0.002641
(1), 0.002637 (1), 0.002633 (1), 0.002633 (1), 0.002632 (1), 0.002626 (1),
0.002621 (1), 0.00262 (1), 0.00262 (1), 0.002617 (1), 0.002617 (1), 0.002608
(1), 0.002605 (1), 0.002603 (1), 0.002592 (1), 0.002582 (1), 0.002579 (1),
0.002569 (1), 0.002556 (1), 0.002553 (1), 0.002541 (1), 0.002537 (1), 0.002537
(1), 0.002526 (1), 0.002517 (1), 0.002516 (1), 0.002515 (1), 0.002513 (1),
0.002506 (1), 0.0025 (1), 0.00249 (1), 0.002476 (1), 0.002474 (1), 0.002469
(1), 0.002465 (1), 0.002457 (1), 0.002446 (1), 0.002411 (1), 0.002406 (1),
0.002337 (1)  
  
Best fit found:  
Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 96  
shifted from previous position = 2.21  
rotated from previous position = 4.92 degrees  
atoms outside contour = 10449, contour level = 0.020173  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.00002091 -1.00000011 0.00000713 213.60097747  
1.00000011 0.00002088 0.00006631 -0.68351183  
-0.00006628 0.00000714 1.00000005 -2.63219292  
Axis -0.00002958 0.00003671 1.00000000  
Axis point 107.14216444 106.46097636 0.00000000  
Rotation angle (degrees) 89.99880145  
Shift along axis -2.63853734  
  
Found 100 fits.  

> select subtract #21

Nothing selected  

> hide #!20 models

> show #!20 models

> hide #21 models

> show #21 models

> color #20 #cccc9900 models

> color #20 #cccc9971 models

> color #20 #cccc9970 models

> color #21 #33684780

> color #21 #2d5c3f80

> color #21 #41865c80

> volume #20 style mesh

> ui mousemode right translate

> cootmode_wire #20

Unknown command: cootmode_wire #20  

> volume #20 color #3351d570

> volume #20 color #6974d570

> chimera-trimmings alias: “cootmode #20”

Unknown command: chimera-trimmings alias: “cootmode #20”  

> chimera-trimmings alias: cootmode #20

Unknown command: chimera-trimmings alias: cootmode #20  

> chimera-trimmings alias:

Unknown command: chimera-trimmings alias:  

> cp ./misc/coot_trimmings.py ~/.coot-preferences/

Unknown command: cp ./misc/coot_trimmings.py ~/.coot-preferences/  

> cp ./misc/coot_trimmings.py ~/.coot-preferences

Unknown command: cp ./misc/coot_trimmings.py ~/.coot-preferences  

> fitmap #21 inMap #20

Fit molecule 2iu2-assembly1.cif (#21) to map emd_20026.map (#20) using 37720
atoms  
average map value = 0.03218, steps = 24  
shifted from previous position = 0.0015  
rotated from previous position = 0.000947 degrees  
atoms outside contour = 10453, contour level = 0.020173  
  
Position of 2iu2-assembly1.cif (#21) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
0.00000536 -1.00000011 0.00000514 213.60348546  
1.00000011 0.00000533 0.00007157 -0.68384386  
-0.00007154 0.00000515 1.00000005 -2.63119672  
Axis -0.00003321 0.00003834 1.00000000  
Axis point 107.14357222 106.46040131 0.00000000  
Rotation angle (degrees) 89.99969221  
Shift along axis -2.63831731  
  

> hide #!20 models

> style #21 stick

Changed 37720 atom styles  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> style sel stick

Changed 37720 atom styles  

> hide sel atoms

> hide sel cartoons

> hide sel atoms

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> nucleotides sel tube/slab shape box

> show sel atoms

> nucleotides sel tube/slab shape box

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> show sel atoms

> hide sel atoms

> style sel stick

Changed 37720 atom styles  

> show sel atoms

> show #!20 models

> select subtract #21

Nothing selected  

> style #21 ball

Changed 37720 atom styles  

> hide #21 atoms

> show #21 atoms

> style #21 stick

Changed 37720 atom styles  

> style #21 sphere

Changed 37720 atom styles  

> style #21 stick

Changed 37720 atom styles  

> show #21 atoms

> hide #21 atoms

> show #21 atoms

> hide #21 atoms

> show #21 atoms

> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"

53466 atoms, 54410 bonds, 5554 residues, 7 models selected  

> color (#21 & sel) byhetero

> select add #21

57322 atoms, 54530 bonds, 9290 residues, 7 models selected  

> select subtract #21

19602 atoms, 19850 bonds, 1426 residues, 6 models selected  

> select subtract #19

16107 atoms, 16313 bonds, 1193 residues, 5 models selected  

> select subtract #18

13978 atoms, 14169 bonds, 1059 residues, 4 models selected  

> select subtract #17

10483 atoms, 10632 bonds, 826 residues, 3 models selected  

> select subtract #16

8354 atoms, 8488 bonds, 692 residues, 2 models selected  

> select subtract #14

5540 atoms, 5607 bonds, 346 residues, 1 model selected  

> select subtract #13

Nothing selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> select subtract #21

Nothing selected  

> select add #20

2 models selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> save /Users/mansoore.esmaili/Downloads/olivmapwire.pdb

Chain IDs longer than 2 characters; truncating  

> save "/Users/mansoore.esmaili/Documents/full sessionNov262024.cxs"

> save /Users/mansoore.esmaili/Documents/editedsession-nove262024.cxs

> hide #!20 models

> hide #21 models

> show #19 models

> hide #19 models

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> select subtract #21

Nothing selected  

> select add #20

2 models selected  

> show #!20 models

> show #21 models

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> show #19 models

> select subtract #20

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> select subtract #21

Nothing selected  

> hide #!20 models

> hide #21 models

> select add #19

3495 atoms, 3537 bonds, 233 residues, 1 model selected  

> select add #18

5624 atoms, 5681 bonds, 367 residues, 2 models selected  

> select add #17

9119 atoms, 9218 bonds, 600 residues, 3 models selected  

> select add #16

11248 atoms, 11362 bonds, 734 residues, 4 models selected  

> select add #15

11248 atoms, 11362 bonds, 734 residues, 6 models selected  

> select add #14

14062 atoms, 14243 bonds, 1080 residues, 7 models selected  

> select add #13

19602 atoms, 19850 bonds, 1426 residues, 8 models selected  

> close #19

> show #18 models

> select subtract #17

12612 atoms, 12776 bonds, 960 residues, 6 models selected  

> select subtract #16

10483 atoms, 10632 bonds, 826 residues, 5 models selected  

> select subtract #15

10483 atoms, 10632 bonds, 826 residues, 3 models selected  

> select subtract #14

7669 atoms, 7751 bonds, 480 residues, 2 models selected  

> select subtract #13

2129 atoms, 2144 bonds, 134 residues, 1 model selected  

> close #17

> select subtract #18

Nothing selected  

> hide #18 models

> close #18

> close #13-14,16#7-12,15

> close #1-6#1.1-3

> show #!20 models

> show #21 models

> save /Users/mansoore.esmaili/Documents/editedsession-nove262024.cxs

> save /Users/mansoore.esmaili/Documents/final-twomolecules.pdb

Chain IDs longer than 2 characters; truncating  

> save /Users/mansoore.esmaili/Downloads/fittedmoldeandstructuretwoonly.pdb

Chain IDs longer than 2 characters; truncating  

> save
> /Users/mansoore.esmaili/Downloads/CIFfileofmapandcrystalstructureapoferritin.cif
> relModel #21

> cootmode wire #21

Unknown command: cootmode wire #21  

> cootmode_wire #21

Unknown command: cootmode_wire #21  

> select add #20

2 models selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> save /Users/mansoore.esmaili/Downloads/PDFforcoot.cif relModel #21

> save /Users/mansoore.esmaili/Downloads/FORCOOT.pdb

Chain IDs longer than 2 characters; truncating  

> save /Users/mansoore.esmaili/Downloads/PDBforcoot1.pdb

Chain IDs longer than 2 characters; truncating  

> hide #!20 models

> select subtract #21

2 models selected  

> show #!20 models

> select subtract #20

Nothing selected  

> select add #20

2 models selected  

> select add #21

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

Cell requested for row 0 is out of bounds for table with 3 rows! Resizing
table model.  

> ui tool show "Build Structure"

> build start atom forcoot

> hide #!20 models

> hide #21 models

> show #!20 models

> show #21 models

> hide #!20 models

> hide #21 models

> show #!20 models

> show #21 models

> save /Users/mansoore.esmaili/foorcoot.pdb

Chain IDs longer than 2 characters; truncating  

> combine #20 #21

> hide #!20 models

> hide #21 models

> hide #1 models

> hide #2 models

> show #2 models

> select subtract #1

Nothing selected  

> show #1 models

> hide #2 models

> show #2 models

> show #!20 models

> hide #!20 models

> show #21 models

> hide #21 models

> show #21 models

> combine #21 #20

> hide #1 models

> hide #2 models

> hide #3 models

> close #21

> close #2

> show #3 models

> show #!20 models

> select add #3

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> select add #20

37720 atoms, 34680 bonds, 7864 residues, 3 models selected  

> combine #3 #20

> hide #3 models

> hide #!20 models

> hide #2 models

> select subtract #3

2 models selected  

> select subtract #20

Nothing selected  

> select add #2

37720 atoms, 34680 bonds, 7864 residues, 1 model selected  

> show #2 models

> select subtract #2

Nothing selected  

> ui tool show "Fit in Map"

> fitmap #3 inMap #20

Fit molecule copy of 2iu2-assembly1.cif (#3) to map emd_20026.map (#20) using
37720 atoms  
average map value = 0.03218, steps = 24  
shifted from previous position = 0.000934  
rotated from previous position = 0.000831 degrees  
atoms outside contour = 10449, contour level = 0.020173  
  
Position of copy of 2iu2-assembly1.cif (#3) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.00000802 -1.00000011 -0.00000037 213.60477085  
1.00000011 -0.00000805 0.00007070 -0.68278101  
-0.00007066 -0.00000036 1.00000005 -2.63092748  
Axis -0.00003553 0.00003515 1.00000000  
Axis point 107.14368009 106.46013890 0.00000000  
Rotation angle (degrees) 90.00045896  
Shift along axis -2.63854037  
  

> fitmap #3 inMap #20 search 100 radius 5

Found 100 unique fits from 100 random placements having fraction of points
inside contour >= 0.100 (100 of 100).  
  
Average map values and times found:  
0.003625 (1), 0.003062 (1), 0.003002 (1), 0.002994 (1), 0.00298 (1), 0.002934
(1), 0.002918 (1), 0.002904 (1), 0.002904 (1), 0.002897 (1), 0.002897 (1),
0.002892 (1), 0.002884 (1), 0.002877 (1), 0.002876 (1), 0.002869 (1), 0.002859
(1), 0.002859 (1), 0.002857 (1), 0.002855 (1), 0.002849 (1), 0.002849 (1),
0.00284 (1), 0.002839 (1), 0.002836 (1), 0.00283 (1), 0.002826 (1), 0.002822
(1), 0.002822 (1), 0.002822 (1), 0.00282 (1), 0.002818 (1), 0.002817 (1),
0.002817 (1), 0.002815 (1), 0.002812 (1), 0.00281 (1), 0.002809 (1), 0.002807
(1), 0.002804 (1), 0.002802 (1), 0.002799 (1), 0.002797 (1), 0.002794 (1),
0.002784 (1), 0.002784 (1), 0.00278 (1), 0.00278 (1), 0.002778 (1), 0.002777
(1), 0.002775 (1), 0.002774 (1), 0.002772 (1), 0.002771 (1), 0.002769 (1),
0.002767 (1), 0.002758 (1), 0.002757 (1), 0.002757 (1), 0.00275 (1), 0.002747
(1), 0.002747 (1), 0.002746 (1), 0.002744 (1), 0.002732 (1), 0.002731 (1),
0.002725 (1), 0.002721 (1), 0.00272 (1), 0.00272 (1), 0.002714 (1), 0.002711
(1), 0.002708 (1), 0.002706 (1), 0.002705 (1), 0.002701 (1), 0.002699 (1),
0.002699 (1), 0.00269 (1), 0.002687 (1), 0.002686 (1), 0.002676 (1), 0.002675
(1), 0.00267 (1), 0.002667 (1), 0.002666 (1), 0.002662 (1), 0.002661 (1),
0.002661 (1), 0.002656 (1), 0.002649 (1), 0.002638 (1), 0.002638 (1), 0.002637
(1), 0.002631 (1), 0.002628 (1), 0.002628 (1), 0.002592 (1), 0.002577 (1),
0.002544 (1)  
  
Best fit found:  
Fit molecule copy of 2iu2-assembly1.cif (#3) to map emd_20026.map (#20) using
37720 atoms  
average map value = 0.003625, steps = 76  
shifted from previous position = 2.32  
rotated from previous position = 1.18 degrees  
atoms outside contour = 32469, contour level = 0.020173  
Position of copy of 2iu2-assembly1.cif (#3) relative to emd_20026.map (#20)
coordinates:  
Matrix rotation and translation  
-0.00009315 -1.00000013 0.00001192 218.18185034  
-0.99999665 0.00009314 -0.00264340 219.35993481  
0.00264336 -0.00001217 -0.99999657 220.75407089  
Axis 0.70707708 -0.70713586 0.00093744  
Axis point 218.61656243 0.00000000 110.66625558  
Rotation angle (degrees) 179.89339340  
Shift along axis -0.63894528  
  
Found 100 fits.  

> show #!20 models

Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitlist.py", line 243, in save_fits_cb  
save_fits(self.session, lfits)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 322, in save_fits  
dpath, fname = os.path.split(m.filename)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File "<frozen posixpath>", line 103, in split  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
File "", line 103, in split  
  
See log for complete Python traceback.  
  

> close #2

> close #1

> show #3 models

Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitlist.py", line 243, in save_fits_cb  
save_fits(self.session, lfits)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 322, in save_fits  
dpath, fname = os.path.split(m.filename)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File "<frozen posixpath>", line 103, in split  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
File "", line 103, in split  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/fitlist.py", line 243, in save_fits_cb  
save_fits(self.session, lfits)  
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_fit/search.py", line 322, in save_fits  
dpath, fname = os.path.split(m.filename)  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File "<frozen posixpath>", line 103, in split  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
TypeError: expected str, bytes or os.PathLike object, not NoneType  
  
File "", line 103, in split  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,10
      Model Number: MNW83LL/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 11881.41.5
      OS Loader Version: 10151.140.19.700.2

Software:

    System Software Overview:

      System Version: macOS 14.7.1 (23H222)
      Kernel Version: Darwin 23.6.0
      Time since boot: 14 days, 5 hours, 28 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.7.1
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.7
    ChimeraX-AtomicLibrary: 14.1.8
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.7
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.3.4
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9.dev202410250340
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.5
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2
    ChimeraX-Label: 1.1.11
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.2.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.0
    coverage: 7.6.4
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.7
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.54.1
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.12.1
    html2text: 2024.2.26
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.0.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.1
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    pluggy: 1.5.0
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    pytest: 8.3.3
    pytest-cov: 5.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.1
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13