Opened 14 months ago
Last modified 14 months ago
#15794 feedback defect
Crash in event loop
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Core | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-6.5.0-45-generic-x86_64-with-glibc2.35 ChimeraX Version: 1.6 (2023-03-23 07:59:11 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000073601dc47b80 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.6 (2023-03-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /home/bacillus/Downloads/cryosparc_P1_J1763_006_volume_map_sharp.mrc > /home/bacillus/Downloads/cryosparc_P1_J1764_005_volume_map_sharp.mrc Opened cryosparc_P1_J1763_006_volume_map_sharp.mrc as #1.1, grid size 440,440,440, pixel 0.7, shown at level 0.0148, step 2, values float32 Opened cryosparc_P1_J1764_005_volume_map_sharp.mrc as #1.2, grid size 440,440,440, pixel 0.7, shown at level 0.0142, step 2, values float32 > hide #!1 models > show #!1 models > hide #!1.1 models > hide #!1.2 models > show #!1.2 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > surface dust #1.1 size 7 > surface dust #1.2 size 7 > fitmap #1.1 inMap #1.2 Fit map cryosparc_P1_J1763_006_volume_map_sharp.mrc in map cryosparc_P1_J1764_005_volume_map_sharp.mrc using 106468 points correlation = 0.4757, correlation about mean = 0.1358, overlap = 56.01 steps = 116, shift = 3.44, angle = 5.02 degrees Position of cryosparc_P1_J1763_006_volume_map_sharp.mrc (#1.1) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.99712625 -0.07466305 -0.01283222 13.79020707 0.07402620 0.99626427 -0.04447043 -3.97593171 0.01610458 0.04339271 0.99892828 -12.37154649 Axis 0.50174131 -0.16524317 0.84908795 Axis point 70.42383224 201.66784458 0.00000000 Rotation angle (degrees) 5.02314840 Shift along axis -2.92841900 > fitmap #1.1 inMap #1.2 Fit map cryosparc_P1_J1763_006_volume_map_sharp.mrc in map cryosparc_P1_J1764_005_volume_map_sharp.mrc using 106468 points correlation = 0.4757, correlation about mean = 0.1359, overlap = 56.01 steps = 36, shift = 0.0125, angle = 0.00494 degrees Position of cryosparc_P1_J1763_006_volume_map_sharp.mrc (#1.1) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.99713226 -0.07458388 -0.01282551 13.78665501 0.07394688 0.99626874 -0.04450233 -3.95454841 0.01609681 0.04342630 0.99892695 -12.37091692 Axis 0.50241378 -0.16525872 0.84868719 Axis point 70.18463367 201.81149428 0.00000000 Rotation angle (degrees) 5.02015614 Shift along axis -2.91890975 > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > fetch 6wvj Unknown command: fetch 6wvj > getpdb 6wvj Unknown command: getpdb 6wvj > getcrd 6wvj Missing or invalid "atoms" argument: invalid atom specifier > pdbimages pdbimages is provided by the uninstalled bundle PDBImages versions 1.0 – 1.2 > import 6wvj Unknown command: import 6wvj > help > open /home/bacillus/Desktop/RNAP_Bsub/6wvj.pdb format pdb 6wvj.pdb title: Cryo-em structure of bacillus subtilis RNA polymerase elongation complex [more info...] Chain information for 6wvj.pdb #2 --- Chain | Description | UniProt A B | DNA-directed RNA polymerase subunit α | RPOA_BACSU 1-314 C | DNA-directed RNA polymerase subunit β | D | DNA-directed RNA polymerase subunit β' | F | DNA-directed RNA polymerase subunit ω | N | DNA (5'-D(P*ap*CP*GP*CP*CP*CP*GP*ap*CP*A)-3') | R | RNA (5'-R(P*GP*GP*CP*GP*CP*GP*CP*G)-3') | T | DNA (5'- D(*TP*GP*TP*CP*GP*GP*GP*CP*GP*TP*CP*CP*GP*CP*GP*CP*GP*CP*C)-3') | Non-standard residues in 6wvj.pdb #2 --- MG — magnesium ion ZN — zinc ion > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.005537, steps = 180 shifted from previous position = 14 rotated from previous position = 9.45 degrees atoms outside contour = 18920, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.98656211 0.12390826 -0.10649858 4.64854454 -0.12571528 0.99201186 -0.01039890 26.04036510 0.10435935 0.02364766 0.99425847 -5.70398997 Axis 0.10363295 -0.64182191 -0.75981896 Axis point 148.38995720 -31.37380045 0.00000000 Rotation angle (degrees) 9.45454778 Shift along axis -11.89753468 > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.005537, steps = 44 shifted from previous position = 0.00114 rotated from previous position = 0.0027 degrees atoms outside contour = 18920, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.98656036 0.12390431 -0.10651941 4.65153871 -0.12571625 0.99201129 -0.01044117 26.04523730 0.10437475 0.02369207 0.99425580 -5.71224259 Axis 0.10388730 -0.64187361 -0.75974054 Axis point 148.43985378 -31.41349455 0.00000000 Rotation angle (degrees) 9.45541864 Shift along axis -11.89469248 > ui tool show "Fit in Map" > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.005537, steps = 44 shifted from previous position = 0.000317 rotated from previous position = 0.000463 degrees atoms outside contour = 18920, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.98656069 0.12390765 -0.10651241 4.65038033 -0.12571916 0.99201095 -0.01043858 26.04554842 0.10436806 0.02368894 0.99425658 -5.71091904 Axis 0.10387137 -0.64184098 -0.75977029 Axis point 148.43942646 -31.40254000 0.00000000 Rotation angle (degrees) 9.45528384 Shift along axis -11.89507238 > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.005537, steps = 44 shifted from previous position = 0.0007 rotated from previous position = 0.00135 degrees atoms outside contour = 18919, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.98656142 0.12391880 -0.10649270 4.64667075 -0.12572909 0.99200978 -0.01043082 26.04647811 0.10434923 0.02367987 0.99425877 -5.70721140 Axis 0.10382344 -0.64174414 -0.75985864 Axis point 148.43722795 -31.36711982 0.00000000 Rotation angle (degrees) 9.45497994 Shift along axis -11.89606742 > select add #2 22367 atoms, 22812 bonds, 16 pseudobonds, 2842 residues, 3 models selected > ui mousemode right rotate > ui mousemode right "rotate selected models" > view matrix models > #2,-0.054688,-0.31905,-0.94616,292.43,0.76704,-0.62009,0.16476,99.564,-0.63927,-0.71673,0.27863,268 > transparency #1.2.1 50 > view matrix models > #2,-0.84372,-0.5143,0.15375,282.23,-0.524,0.85126,-0.027975,95.673,-0.11649,-0.10417,-0.98771,278.22 > ui mousemode right "translate selected models" > view matrix models > #2,-0.84372,-0.5143,0.15375,283.36,-0.524,0.85126,-0.027975,103.53,-0.11649,-0.10417,-0.98771,305.17 > ui mousemode right "rotate selected models" > view matrix models > #2,-0.51291,0.48547,0.70798,47.44,0.51222,0.8349,-0.20142,-2.2454,-0.68888,0.25934,-0.6769,292.3 > view matrix models > #2,-0.71979,0.22718,-0.65596,271.4,0.044296,-0.92798,-0.37,301.41,-0.69277,-0.29538,0.65789,201.87 > ui mousemode right "move picked models" > view matrix models > #2,-0.71979,0.22718,-0.65596,277.75,0.044296,-0.92798,-0.37,301.98,-0.69277,-0.29538,0.65789,201.08 > ui mousemode right "rotate selected models" > view matrix models > #2,-0.7409,0.67034,-0.04131,149.33,-0.070465,-0.13876,-0.98782,290.37,-0.66791,-0.72896,0.15004,314.87 > view matrix models > #2,-0.6518,0.75829,0.012224,120.54,-0.11335,-0.081465,-0.99021,288.68,-0.74987,-0.6468,0.13905,315.91 > view matrix models > #2,-0.5488,0.81435,-0.18881,124.93,0.17625,-0.10807,-0.97839,254.63,-0.81716,-0.57022,-0.084222,341.55 > view matrix models > #2,-0.51028,0.85799,-0.058873,98.823,0.12367,0.005462,-0.99231,248.36,-0.85107,-0.51364,-0.1089,341.54 > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.01178, steps = 320 shifted from previous position = 11.9 rotated from previous position = 20.4 degrees atoms outside contour = 15576, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation -0.47553557 0.78329358 -0.40039619 153.79988628 0.25886298 -0.31040219 -0.91468052 268.16811977 -0.84074722 -0.53861087 -0.05515843 334.03764707 Axis 0.48136390 0.56364318 -0.67126385 Axis point 237.21534638 251.09446165 0.00000000 Rotation angle (degrees) 157.00634085 Shift along axis 0.95744927 > hide sel surfaces > hide sel cartoons > hide sel atoms > show sel cartoons > view matrix models > #2,0.67669,-0.1839,0.71293,-0.95308,-0.1887,0.89264,0.40936,10.459,-0.71168,-0.41154,0.56934,226.27 > view matrix models > #2,0.33098,0.33549,0.88199,-44.562,-0.7828,0.61955,0.058093,161.46,-0.52695,-0.70965,0.46768,253.56 > view matrix models > #2,0.63507,0.07508,0.76879,-35.49,-0.70322,0.46803,0.5352,113.12,-0.31963,-0.88052,0.35003,263.8 > fitmap #2 inMap #1.2 Fit molecule 6wvj.pdb (#2) to map cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) using 22367 atoms average map value = 0.01286, steps = 192 shifted from previous position = 6.14 rotated from previous position = 14.9 degrees atoms outside contour = 14657, contour level = 0.014188 Position of 6wvj.pdb (#2) relative to cryosparc_P1_J1764_005_volume_map_sharp.mrc (#1.2) coordinates: Matrix rotation and translation 0.65928265 0.29117335 0.69322759 -52.81692947 -0.74738453 0.35461508 0.56184030 132.62875268 -0.08223603 -0.88851913 0.45141002 220.03154454 Axis -0.74564038 0.39867151 -0.53393019 Axis point 0.00000000 227.75221993 7.65895087 Rotation angle (degrees) 76.54663303 Shift along axis -25.22374436 > select subtract #2 Nothing selected > hide #!2 models > ui mousemode right "contour level" > volume #1.2 level 0.007204 > volume #1.2 level 0.05131 > volume #1.2 level 0.06492 > ui mousemode right zoom > volume #1.2 level 0.003867 > volume #1.2 step 1 > volume #1.2 level 0.01122 > ui mousemode right "contour level" > volume #1.2 level 0.01008 > volume #1.2 level 0.009703 > surface dust #1.2 size 7 > volume #1.2 level 0.01572 > surface dust #1.2 size 7 > hide #!1.2 models > show #!1.1 models > volume #1.1 level 0.01402 > volume #1.1 level 0.01321 > volume #1.1 level 0.012 > surface dust #1.1 size 7 > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.1 models > volume #1.2 level -0.06142 > volume #1.2 level -0.05915 > undo > ui mousemode right "contour level" > ui mousemode right "pick blobs" > volume showOutlineBox true > volume showOutlineBox false > volume showOutlineBox true > volume showOutlineBox false Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic models, 2 maps. > volume region all imageMode "full region" > volume unzone > mousemode rightMode "crop volume" > volume region all imageMode "full region" > volume unzone > mousemode rightMode "crop volume" > volume step 1 > volume step 2 > volume hide > volume show > transparency 0 > transparency 50 > transparency 0 > transparency 50 > volume showOutlineBox true > volume showOutlineBox false > volume planes z style image imageMode "full region" > mousemode rightMode "move planes" > volume planes z style image imageMode "full region" > mousemode rightMode "move planes" > volume #1.1 style image region all imageMode "tilted slab" tiltedSlabAxis > 0,0,1 tiltedSlabOffset 154.1 tiltedSlabSpacing 0.7004 tiltedSlabPlaneCount > 10 > mousemode rightMode "rotate slab" > volume #1.2 style image region all imageMode "tilted slab" tiltedSlabAxis > 0,0,1 tiltedSlabOffset 154.1 tiltedSlabSpacing 0.7004 tiltedSlabPlaneCount > 10 > mousemode rightMode "rotate slab" > volume #1.1 orthoplanes xyz positionPlanes 220,220,220 style image region > all > mousemode rightMode "move planes" > volume #1.2 orthoplanes xyz positionPlanes 220,220,220 style image region > all > mousemode rightMode "move planes" > volume #1.1 orthoplanes xyz positionPlanes 220,220,220 style image region > all > mousemode rightMode "move planes" > volume #1.2 orthoplanes xyz positionPlanes 220,220,220 style image region > all > mousemode rightMode "move planes" > volume region all imageMode "full region" > volume unzone > mousemode rightMode "crop volume" > volume style surface > transparency 0 > volume showOutlineBox false > volume showOutlineBox true > volume showOutlineBox false > volume style surface > volume style mesh > volume style image > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > volume show > reset Unknown command: reset > restart Unknown command: restart > volume #1.1 color #ff7800 color white color white > volume #1.2 color #2ec27e color white color white > volume #1.1 level -0.003977,0 level 0.02495,0.8 level 0.1514,1 > volume #1.1 style surface > volume #1.2 style surface > volume #1.2 level 0.01464 > volume #1.1 level 0.01411 > surface dust #1.1 size 7 > surface dust #1.2 size 7 > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > hide #!1.2 models > show #!1.1 models > show #!1.2 models > hide #!1.1 models ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6 (2023-03-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.6 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.2 OpenGL renderer: Mesa Intel(R) UHD Graphics (CML GT2) OpenGL vendor: Intel Python: 3.9.11 Locale: en_US.UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION=ubuntu XDG_SESSION_DESKTOP=ubuntu XDG_CURRENT_DESKTOP=ubuntu:GNOME DISPLAY=:1 Manufacturer: Dell Inc. Model: G5 5500 OS: Ubuntu 22.04 Jammy Jellyfish Architecture: 64bit ELF Virtual Machine: none CPU: 12 Intel(R) Core(TM) i7-10750H CPU @ 2.60GHz Cache Size: 12288 KB Memory: total used free shared buff/cache available Mem: 15Gi 2.3Gi 2.6Gi 616Mi 10Gi 12Gi Swap: 2.0Gi 0.0Ki 2.0Gi Graphics: 00:02.0 VGA compatible controller [0300]: Intel Corporation CometLake-H GT2 [UHD Graphics] [8086:9bc4] (rev 05) DeviceName: Onboard - Video Subsystem: Dell CometLake-H GT2 [UHD Graphics] [1028:09e2] Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2023.5.7 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9 ChimeraX-AddH: 2.2.3 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.3.3 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-LinuxSupport: 1.0.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 distro: 1.7.0 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 23.1 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0
Change History (2)
comment:1 by , 14 months ago
Cc: | added |
---|---|
Component: | Unassigned → Core |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 14 months ago
Status: | accepted → feedback |
---|
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Hi Martin,
--Eric