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Opened 15 months ago
Closed 15 months ago
#15750 closed defect (duplicate)
SEQCROW error: AttributeError: 'NoneType' object has no attribute 'group'
| Reported by: | Owned by: | Tony Schaefer | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-6.5.0-45-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> toolshed show
Downloading bundle SEQCROW-1.8.10-py3-none-any.whl
Errors may have occurred when running pip:
pip standard error:
\---
[notice] A new release of pip is available: 23.0 -> 24.2
[notice] To update, run: chimerax -m pip install --upgrade pip
\---
pip standard output:
\---
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
Processing ./SEQCROW-1.8.10-py3-none-any.whl
Requirement already satisfied: scipy in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from SEQCROW==1.8.10) (1.9.3)
Requirement already satisfied: ChimeraX-Core<=1.9,>=1.3 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from SEQCROW==1.8.10) (1.6.1)
Requirement already satisfied: jinja2 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from SEQCROW==1.8.10) (3.1.2)
Collecting Send2Trash
Downloading Send2Trash-1.8.3-py3-none-any.whl (18 kB)
Requirement already satisfied: psutil in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from SEQCROW==1.8.10) (5.9.4)
Requirement already satisfied: MarkupSafe>=2.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from jinja2->SEQCROW==1.8.10) (2.1.2)
Requirement already satisfied: numpy<1.26.0,>=1.18.5 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from scipy->SEQCROW==1.8.10) (1.23.5)
Installing collected packages: Send2Trash, SEQCROW
Successfully installed SEQCROW-1.8.10 Send2Trash-1.8.3
\---
Successfully installed SEQCROW-1.8.10 Send2Trash-1.8.3
Installed SEQCROW (1.8.10)
> ui tool show "2D Builder"
Please register the custom scheme 'editor' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.
Traceback (most recent call last):
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 619, in handle_scheme
tmp_url = re.search(
AttributeError: 'NoneType' object has no attribute 'group'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest
self._callback(info)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 368, in thread_safe
func(*args, **kw)
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 630, in handle_scheme
raise IOError(err)
OSError: 'NoneType' object has no attribute 'group'
OSError: 'NoneType' object has no attribute 'group'
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 630, in handle_scheme
raise IOError(err)
See log for complete Python traceback.
> hide #1 models
Structure could not be generated by the NCI CACTUS web API.Check your
structure for errors:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
114157 0 0 0 0 999 V2000
2.5981 1.0000 0.0000 C 0 0 0 0 0 0
3.4641 0.5000 0.0000 C 0 0 0 0 0 0
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M END
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest
self._callback(info)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 368, in thread_safe
func(*args, **kw)
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
UnboundLocalError: local variable 's_sd_get' referenced before assignment
UnboundLocalError: local variable 's_sd_get' referenced before assignment
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
See log for complete Python traceback.
Structure could not be generated by the NCI CACTUS web API.Check your
structure for errors:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
114157 0 0 0 0 999 V2000
2.5981 1.0000 0.0000 C 0 0 0 0 0 0
3.4641 0.5000 0.0000 C 0 0 0 0 0 0
3.4641 -0.5000 0.0000 C 0 0 0 0 0 0
2.5981 -1.0000 0.0000 C 0 0 0 0 0 0
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97 76 1 0 0 0 0
55 98 1 0 0 0 0
98 99 1 0 0 0 0
99100 2 0 0 0 0
100 57 1 0 0 0 0
53101 1 0 0 0 0
101102 2 0 0 0 0
102 98 1 0 0 0 0
51103 1 0 0 0 0
103104 2 0 0 0 0
104101 1 0 0 0 0
49105 1 0 0 0 0
105106 2 0 0 0 0
106103 1 0 0 0 0
47107 1 0 0 0 0
107108 2 0 0 0 0
108105 1 0 0 0 0
45109 1 0 0 0 0
109110 2 0 0 0 0
110107 1 0 0 0 0
43111 1 0 0 0 0
111112 2 0 0 0 0
112109 1 0 0 0 0
41113 1 0 0 0 0
113114 2 0 0 0 0
114111 1 0 0 0 0
M END
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest
self._callback(info)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 368, in thread_safe
func(*args, **kw)
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
UnboundLocalError: local variable 's_sd_get' referenced before assignment
UnboundLocalError: local variable 's_sd_get' referenced before assignment
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
See log for complete Python traceback.
Structure could not be generated by the NCI CACTUS web API.Check your
structure for errors:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
114157 0 0 0 0 999 V2000
2.5981 1.0000 0.0000 C 0 0 0 0 0 0
3.4641 0.5000 0.0000 C 0 0 0 0 0 0
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97 76 1 0 0 0 0
55 98 1 0 0 0 0
98 99 1 0 0 0 0
99100 2 0 0 0 0
100 57 1 0 0 0 0
53101 1 0 0 0 0
101102 2 0 0 0 0
102 98 1 0 0 0 0
51103 1 0 0 0 0
103104 2 0 0 0 0
104101 1 0 0 0 0
49105 1 0 0 0 0
105106 2 0 0 0 0
106103 1 0 0 0 0
47107 1 0 0 0 0
107108 2 0 0 0 0
108105 1 0 0 0 0
45109 1 0 0 0 0
109110 2 0 0 0 0
110107 1 0 0 0 0
43111 1 0 0 0 0
111112 2 0 0 0 0
112109 1 0 0 0 0
41113 1 0 0 0 0
113114 2 0 0 0 0
114111 1 0 0 0 0
M END
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest
self._callback(info)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 368, in thread_safe
func(*args, **kw)
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
UnboundLocalError: local variable 's_sd_get' referenced before assignment
UnboundLocalError: local variable 's_sd_get' referenced before assignment
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
See log for complete Python traceback.
> undo
Structure could not be generated by the NCI CACTUS web API.Check your
structure for errors:
Molecule from ChemDoodle Web Components
http://www.ichemlabs.com
114157 0 0 0 0 999 V2000
2.5981 1.0000 0.0000 C 0 0 0 0 0 0
3.4641 0.5000 0.0000 C 0 0 0 0 0 0
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2.5981 -1.0000 0.0000 C 0 0 0 0 0 0
1.7321 -0.5000 0.0000 C 0 0 0 0 0 0
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4.3301 1.0000 0.0000 C 0 0 0 0 0 0
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6.9282 -3.5000 0.0000 C 0 0 0 0 0 0
6.0622 -4.0000 0.0000 C 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 2 0 0 0 0
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13 39 1 0 0 0 0
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42 14 1 0 0 0 0
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44 10 1 0 0 0 0
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58 35 1 0 0 0 0
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55 98 1 0 0 0 0
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99100 2 0 0 0 0
100 57 1 0 0 0 0
53101 1 0 0 0 0
101102 2 0 0 0 0
102 98 1 0 0 0 0
51103 1 0 0 0 0
103104 2 0 0 0 0
104101 1 0 0 0 0
49105 1 0 0 0 0
105106 2 0 0 0 0
106103 1 0 0 0 0
47107 1 0 0 0 0
107108 2 0 0 0 0
108105 1 0 0 0 0
45109 1 0 0 0 0
109110 2 0 0 0 0
110107 1 0 0 0 0
43111 1 0 0 0 0
111112 2 0 0 0 0
112109 1 0 0 0 0
41113 1 0 0 0 0
113114 2 0 0 0 0
114111 1 0 0 0 0
M END
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest
self._callback(info)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept
return interceptor(request_info, *args)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate
self.session.ui.thread_safe(self.handle_scheme, url)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 368, in thread_safe
func(*args, **kw)
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
UnboundLocalError: local variable 's_sd_get' referenced before assignment
UnboundLocalError: local variable 's_sd_get' referenced before assignment
File "/home/chemistrylab/.local/share/ChimeraX/1.6/site-
packages/SEQCROW/tools/mol_builder.py", line 609, in handle_scheme
msg, status = s_sd_get.msg, s_sd_get.status
See log for complete Python traceback.
> hide #1 models
OpenGL version: 4.5 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.2
OpenGL renderer: llvmpipe (LLVM 15.0.7, 256 bits)
OpenGL vendor: Mesa
Python: 3.9.11
Locale: en_IN.ISO8859-1
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb
XDG_SESSION_TYPE=wayland
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
WAYLAND_DISPLAY=wayland-0
GNOME_SETUP_DISPLAY=:1
DISPLAY=:0
Manufacturer: innotek GmbH
Model: VirtualBox
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: oracle
CPU: 1 Intel(R) Core(TM) i5-7500T CPU @ 2.70GHz
Cache Size: 6144 KB
Memory:
total used free shared buff/cache available
Mem: 8.1Gi 1.6Gi 2.1Gi 126Mi 4.4Gi 6.1Gi
Swap: 2.0Gi 0B 2.0Gi
Graphics:
00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405]
Subsystem: VMware SVGA II Adapter [15ad:0405]
Kernel driver in use: vmwgfx
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
Send2Trash: 1.8.3
SEQCROW: 1.8.10
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 15 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → SEQCROW error: AttributeError: 'NoneType' object has no attribute 'group' |
comment:2 by , 15 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Same as #15749, same reporter.