Changes between Initial Version and Version 1 of Ticket #15728


Ignore:
Timestamp:
Aug 5, 2024, 11:55:29 AM (15 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #15728

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Core
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Crash in python_instances_of_class

  • Ticket #15728 – Description

    initial v1  
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     180[deleted to fit within ticket size limits],
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    … …  
    49472466Chain IDs of 21 residues changed 
    49482467
    4949 > delete #2/Ew:132
    4950 
    4951 > renumber #2/Ew:133-9999999 start 132
    4952 
    4953 11 residues renumbered 
    4954 ['3', '139'] 
    4955 
    4956 > select #2/Ew
    4957 
    4958 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    4959 107 
    4960 108 
    4961 >1 
    4962 > renumber #2/Ew start 108
    4963 
    4964 142 residues renumbered 
    4965 
    4966 > changechains #2/Ew Gc
    4967 
    4968 Chain IDs of 142 residues changed 
    4969 ['1', '3'] 
    4970 
    4971 > select #2/GO
    4972 
    4973 18 atoms, 18 bonds, 3 residues, 1 model selected 
    4974 249 
    4975 250 
    4976 >1 
    4977 > renumber #2/GO start 250
    4978 
    4979 3 residues renumbered 
    4980 
    4981 > changechains #2/GO Gc
    4982 
    4983 Chain IDs of 3 residues changed 
    4984 ['1', '8'] 
    4985 
    4986 > select #2/Z
    4987 
    4988 69 atoms, 71 bonds, 8 residues, 1 model selected 
    4989 252 
    4990 253 
    4991 >1 
    4992 > renumber #2/Z start 253
    4993 
    4994 8 residues renumbered 
    4995 
    4996 > changechains #2/Z Gc
    4997 
    4998 Chain IDs of 8 residues changed 
    4999 ['2', '18'] 
    5000 
    5001 > select #2/ES
    5002 
    5003 163 atoms, 164 bonds, 18 residues, 1 model selected 
    5004 260 
    5005 262 
    5006 >2 
    5007 > renumber #2/ES start 262
    5008 
    5009 18 residues renumbered 
    5010 
    5011 > changechains #2/ES Gc
    5012 
    5013 Chain IDs of 18 residues changed 
    5014 ['1', '7'] 
    5015 
    5016 > select #2/Fc
    5017 
    5018 40 atoms, 41 bonds, 7 residues, 1 model selected 
    5019 279 
    5020 282 
    5021 >3 
    5022 > renumber #2/Fc start 282
    5023 
    5024 7 residues renumbered 
    5025 
    5026 > changechains #2/Fc Gc
    5027 
    5028 Chain IDs of 7 residues changed 
    5029 ['7', '12'] 
    5030 
    5031 > select #2/Fa
    5032 
    5033 177 atoms, 179 bonds, 24 residues, 1 model selected 
    5034 288 
    5035 289 
    5036 >1 
    5037 > renumber #2/Fa start 289
    5038 
    5039 24 residues renumbered 
    5040 
    5041 > changechains #2/Fa Gc
    5042 
    5043 Chain IDs of 24 residues changed 
    5044 ['1', '10'] 
    5045 
    5046 > select #2/2
    5047 
    5048 81 atoms, 83 bonds, 10 residues, 1 model selected 
    5049 312 
    5050 314 
    5051 >2 
    5052 > renumber #2/2 start 314
    5053 
    5054 10 residues renumbered 
    5055 
    5056 > changechains #2/2 Gc
    5057 
    5058 Chain IDs of 10 residues changed 
    5059 ['1', '2'] 
    5060 
    5061 > select #2/E
    5062 
    5063 16 atoms, 16 bonds, 2 residues, 1 model selected 
    5064 323 
    5065 326 
    5066 >3 
    5067 > renumber #2/E start 326
    5068 
    5069 2 residues renumbered 
    5070 
    5071 > changechains #2/E Gc
    5072 
    5073 Chain IDs of 2 residues changed 
    5074 ['1', '10'] 
    5075 
    5076 > select #2/Ff
    5077 
    5078 75 atoms, 76 bonds, 10 residues, 1 model selected 
    5079 327 
    5080 328 
    5081 >1 
    5082 > renumber #2/Ff start 328
    5083 
    5084 10 residues renumbered 
    5085 
    5086 > changechains #2/Ff Gc
    5087 
    5088 Chain IDs of 10 residues changed 
    5089 ['4', '63'] 
    5090 
    5091 > select #2/E2
    5092 
    5093 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    5094 337 
    5095 338 
    5096 >1 
    5097 > renumber #2/E2 start 338
    5098 
    5099 132 residues renumbered 
    5100 
    5101 > changechains #2/E2 Gc
    5102 
    5103 Chain IDs of 132 residues changed 
    5104 ['9', '11'] 
    5105 
    5106 > select #2/W
    5107 
    5108 182 atoms, 189 bonds, 20 residues, 1 model selected 
    5109 469 
    5110 470 
    5111 >1 
    5112 > renumber #2/W start 470
    5113 
    5114 20 residues renumbered 
    5115 
    5116 > changechains #2/W Gc
    5117 
    5118 Chain IDs of 20 residues changed 
    5119 ['1', '1'] 
    5120 
    5121 > select #2/BM
    5122 
    5123 7 atoms, 6 bonds, 1 residue, 1 model selected 
    5124 489 
    5125 490 
    5126 >1 
    5127 > renumber #2/BM start 490
    5128 
    5129 1 residues renumbered 
    5130 
    5131 > changechains #2/BM Gc
    5132 
    5133 Chain IDs of 1 residues changed 
    5134 Renumering chain LtaP07.0060.mRNA_A 
    5135 ['1', '5'] 
    5136 
    5137 > select #2/A
    5138 
    5139 32 atoms, 33 bonds, 5 residues, 1 model selected 
    5140 0 
    5141 5 
    5142 >5 
    5143 > renumber #2/A start 5
    5144 
    5145 5 residues renumbered 
    5146 ['5', '33'] 
    5147 
    5148 > select #2/Fd
    5149 
    5150 314 atoms, 324 bonds, 36 residues, 1 model selected 
    5151 9 
    5152 10 
    5153 >1 
    5154 > renumber #2/Fd start 10
    5155 
    5156 36 residues renumbered 
    5157 
    5158 > changechains #2/Fd A
    5159 
    5160 Chain IDs of 36 residues changed 
    5161 ['1', '4'] 
    5162 
    5163 > select #2/Ef
    5164 
    5165 24 atoms, 23 bonds, 4 residues, 1 model selected 
    5166 45 
    5167 46 
    5168 >1 
    5169 > renumber #2/Ef start 46
    5170 
    5171 4 residues renumbered 
    5172 
    5173 > changechains #2/Ef A
    5174 
    5175 Chain IDs of 4 residues changed 
    5176 ['1', '74'] 
    5177 
    5178 > select #2/Eg
    5179 
    5180 577 atoms, 589 bonds, 74 residues, 1 model selected 
    5181 49 
    5182 50 
    5183 >1 
    5184 > renumber #2/Eg start 50
    5185 
    5186 74 residues renumbered 
    5187 
    5188 > changechains #2/Eg A
    5189 
    5190 Chain IDs of 74 residues changed 
    5191 ['3', '18'] 
    5192 
    5193 > select #2/j
    5194 
    5195 160 atoms, 162 bonds, 22 residues, 1 model selected 
    5196 123 
    5197 124 
    5198 >1 
    5199 > renumber #2/j start 124
    5200 
    5201 22 residues renumbered 
    5202 
    5203 > changechains #2/j A
    5204 
    5205 Chain IDs of 22 residues changed 
    5206 
    5207 > renumber #2/Ei:7-9999999 start 8
    5208 
    5209 19 residues renumbered 
    5210 
    5211 > ~bond #2/Ei:6@C #2/Ei:8@N
    5212 
    5213 ['2', '21'] 
    5214 
    5215 > select #2/Ei
    5216 
    5217 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    5218 145 
    5219 145 
    5220 >0 
    5221 
    5222 > delete #2/Ei:1
    5223 
    5224 > renumber #2/Ei start 146
    5225 
    5226 24 residues renumbered 
    5227 
    5228 > changechains #2/Ei A
    5229 
    5230 Chain IDs of 24 residues changed 
    5231 ['1', '4'] 
    5232 
    5233 > select #2/Bi
    5234 
    5235 23 atoms, 22 bonds, 4 residues, 1 model selected 
    5236 170 
    5237 168 
    5238 >-2 
    5239 
    5240 > delete #2/Bi:3
    5241 
    5242 > delete #2/Bi:2
    5243 
    5244 > delete #2/Bi:1
    5245 
    5246 > renumber #2/Bi start 171
    5247 
    5248 1 residues renumbered 
    5249 
    5250 > changechains #2/Bi A
    5251 
    5252 Chain IDs of 1 residues changed 
    5253 ['1', '3'] 
    5254 
    5255 > select #2/GM
    5256 
    5257 21 atoms, 20 bonds, 3 residues, 1 model selected 
    5258 171 
    5259 171 
    5260 >0 
    5261 
    5262 > delete #2/GM:1
    5263 
    5264 > renumber #2/GM start 172
    5265 
    5266 2 residues renumbered 
    5267 
    5268 > changechains #2/GM A
    5269 
    5270 Chain IDs of 2 residues changed 
    5271 ['2', '81'] 
    5272 
    5273 > select #2/E8
    5274 
    5275 695 atoms, 717 bonds, 86 residues, 1 model selected 
    5276 173 
    5277 174 
    5278 >1 
    5279 > renumber #2/E8 start 174
    5280 
    5281 86 residues renumbered 
    5282 
    5283 > changechains #2/E8 A
    5284 
    5285 Chain IDs of 86 residues changed 
    5286 Renumering chain LtaP32.3800.mRNA_A 
    5287 ['1', '8'] 
    5288 
    5289 > select #2/N
    5290 
    5291 66 atoms, 69 bonds, 8 residues, 1 model selected 
    5292 0 
    5293 34 
    5294 >34 
    5295 > renumber #2/N start 34
    5296 
    5297 8 residues renumbered 
    5298 ['1', '5'] 
    5299 
    5300 > select #2/GZ
    5301 
    5302 35 atoms, 34 bonds, 5 residues, 1 model selected 
    5303 41 
    5304 42 
    5305 >1 
    5306 > renumber #2/GZ start 42
    5307 
    5308 5 residues renumbered 
    5309 
    5310 > changechains #2/GZ N
    5311 
    5312 Chain IDs of 5 residues changed 
    5313 ['14', '47'] 
    5314 
    5315 > select #2/FT
    5316 
    5317 810 atoms, 833 bonds, 101 residues, 1 model selected 
    5318 46 
    5319 47 
    5320 >1 
    5321 > renumber #2/FT start 47
    5322 
    5323 101 residues renumbered 
    5324 
    5325 > changechains #2/FT N
    5326 
    5327 Chain IDs of 101 residues changed 
    5328 Renumering chain LtaP13.0770.mRNA_A 
    5329 ['1', '5'] 
    5330 
    5331 > select #2/4
    5332 
    5333 50 atoms, 51 bonds, 5 residues, 1 model selected 
    5334 0 
    5335 25 
    5336 >25 
    5337 > renumber #2/4 start 25
    5338 
    5339 5 residues renumbered 
    5340 ['1', '3'] 
    5341 
    5342 > select #2/D
    5343 
    5344 20 atoms, 20 bonds, 3 residues, 1 model selected 
    5345 29 
    5346 30 
    5347 >1 
    5348 > renumber #2/D start 30
    5349 
    5350 3 residues renumbered 
    5351 
    5352 > changechains #2/D 4
    5353 
    5354 Chain IDs of 3 residues changed 
    5355 ['1', '1'] 
    5356 
    5357 > select #2/CN
    5358 
    5359 6 atoms, 5 bonds, 1 residue, 1 model selected 
    5360 32 
    5361 33 
    5362 >1 
    5363 > renumber #2/CN start 33
    5364 
    5365 1 residues renumbered 
    5366 
    5367 > changechains #2/CN 4
    5368 
    5369 Chain IDs of 1 residues changed 
    5370 ['1', '7'] 
    5371 
    5372 > select #2/FG
    5373 
    5374 48 atoms, 48 bonds, 7 residues, 1 model selected 
    5375 33 
    5376 34 
    5377 >1 
    5378 > renumber #2/FG start 34
    5379 
    5380 7 residues renumbered 
    5381 
    5382 > changechains #2/FG 4
    5383 
    5384 Chain IDs of 7 residues changed 
    5385 ['1', '14'] 
    5386 
    5387 > select #2/GH
    5388 
    5389 92 atoms, 92 bonds, 14 residues, 1 model selected 
    5390 40 
    5391 57 
    5392 >17 
    5393 > renumber #2/GH start 57
    5394 
    5395 14 residues renumbered 
    5396 
    5397 > changechains #2/GH 4
    5398 
    5399 Chain IDs of 14 residues changed 
    5400 ['1', '5'] 
    5401 
    5402 > select #2/GW
    5403 
    5404 46 atoms, 46 bonds, 5 residues, 1 model selected 
    5405 70 
    5406 71 
    5407 >1 
    5408 > renumber #2/GW start 71
    5409 
    5410 5 residues renumbered 
    5411 
    5412 > changechains #2/GW 4
    5413 
    5414 Chain IDs of 5 residues changed 
    5415 ['1', '4'] 
    5416 
    5417 > select #2/Fj
    5418 
    5419 24 atoms, 23 bonds, 4 residues, 1 model selected 
    5420 75 
    5421 76 
    5422 >1 
    5423 > renumber #2/Fj start 76
    5424 
    5425 4 residues renumbered 
    5426 
    5427 > changechains #2/Fj 4
    5428 
    5429 Chain IDs of 4 residues changed 
    5430 ['1', '7'] 
    5431 
    5432 > select #2/E4
    5433 
    5434 48 atoms, 48 bonds, 7 residues, 1 model selected 
    5435 79 
    5436 80 
    5437 >1 
    5438 > renumber #2/E4 start 80
    5439 
    5440 7 residues renumbered 
    5441 
    5442 > changechains #2/E4 4
    5443 
    5444 Chain IDs of 7 residues changed 
    5445 ['1', '14'] 
    5446 
    5447 > select #2/Er
    5448 
    5449 99 atoms, 102 bonds, 14 residues, 1 model selected 
    5450 86 
    5451 87 
    5452 >1 
    5453 > renumber #2/Er start 87
    5454 
    5455 14 residues renumbered 
    5456 
    5457 > changechains #2/Er 4
    5458 
    5459 Chain IDs of 14 residues changed 
    5460 ['1', '25'] 
    5461 
    5462 > select #2/ER
    5463 
    5464 208 atoms, 211 bonds, 25 residues, 1 model selected 
    5465 100 
    5466 101 
    5467 >1 
    5468 > renumber #2/ER start 101
    5469 
    5470 25 residues renumbered 
    5471 
    5472 > changechains #2/ER 4
    5473 
    5474 Chain IDs of 25 residues changed 
    5475 ['1', '20'] 
    5476 
    5477 > select #2/Fz
    5478 
    5479 146 atoms, 147 bonds, 20 residues, 1 model selected 
    5480 125 
    5481 124 
    5482 >-1 
    5483 
    5484 > delete #2/Fz:2
    5485 
    5486 > delete #2/Fz:1
    5487 
    5488 > renumber #2/Fz start 126
    5489 
    5490 18 residues renumbered 
    5491 
    5492 > changechains #2/Fz 4
    5493 
    5494 Chain IDs of 18 residues changed 
    5495 ['1', '8'] 
    5496 
    5497 > select #2/p
    5498 
    5499 62 atoms, 62 bonds, 8 residues, 1 model selected 
    5500 143 
    5501 144 
    5502 >1 
    5503 > renumber #2/p start 144
    5504 
    5505 8 residues renumbered 
    5506 
    5507 > changechains #2/p 4
    5508 
    5509 Chain IDs of 8 residues changed 
    5510 ['1', '1'] 
    5511 
    5512 > select #2/Dk
    5513 
    5514 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5515 151 
    5516 152 
    5517 >1 
    5518 > renumber #2/Dk start 152
    5519 
    5520 1 residues renumbered 
    5521 
    5522 > changechains #2/Dk 4
    5523 
    5524 Chain IDs of 1 residues changed 
    5525 ['1', '2'] 
    5526 
    5527 > select #2/Bz
    5528 
    5529 16 atoms, 15 bonds, 2 residues, 1 model selected 
    5530 152 
    5531 153 
    5532 >1 
    5533 > renumber #2/Bz start 153
    5534 
    5535 2 residues renumbered 
    5536 
    5537 > changechains #2/Bz 4
    5538 
    5539 Chain IDs of 2 residues changed 
    5540 ['1', '2'] 
    5541 
    5542 > select #2/Br
    5543 
    5544 11 atoms, 10 bonds, 2 residues, 1 model selected 
    5545 154 
    5546 155 
    5547 >1 
    5548 > renumber #2/Br start 155
    5549 
    5550 2 residues renumbered 
    5551 
    5552 > changechains #2/Br 4
    5553 
    5554 Chain IDs of 2 residues changed 
    5555 ['1', '18'] 
    5556 
    5557 > select #2/F6
    5558 
    5559 144 atoms, 146 bonds, 18 residues, 1 model selected 
    5560 156 
    5561 181 
    5562 >25 
    5563 > renumber #2/F6 start 181
    5564 
    5565 18 residues renumbered 
    5566 
    5567 > changechains #2/F6 4
    5568 
    5569 Chain IDs of 18 residues changed 
    5570 ['1', '70'] 
    5571 
    5572 > select #2/q
    5573 
    5574 576 atoms, 590 bonds, 70 residues, 1 model selected 
    5575 198 
    5576 200 
    5577 >2 
    5578 > renumber #2/q start 200
    5579 
    5580 70 residues renumbered 
    5581 
    5582 > changechains #2/q 4
    5583 
    5584 Chain IDs of 70 residues changed 
    5585 ['1', '2'] 
    5586 
    5587 > select #2/Aw
    5588 
    5589 14 atoms, 13 bonds, 2 residues, 1 model selected 
    5590 269 
    5591 270 
    5592 >1 
    5593 > renumber #2/Aw start 270
    5594 
    5595 2 residues renumbered 
    5596 
    5597 > changechains #2/Aw 4
    5598 
    5599 Chain IDs of 2 residues changed 
    5600 ['1', '2'] 
    5601 
    5602 > select #2/X
    5603 
    5604 12 atoms, 11 bonds, 2 residues, 1 model selected 
    5605 271 
    5606 272 
    5607 >1 
    5608 > renumber #2/X start 272
    5609 
    5610 2 residues renumbered 
    5611 
    5612 > changechains #2/X 4
    5613 
    5614 Chain IDs of 2 residues changed 
    5615 ['1', '12'] 
    5616 
    5617 > select #2/Y
    5618 
    5619 92 atoms, 95 bonds, 12 residues, 1 model selected 
    5620 273 
    5621 274 
    5622 >1 
    5623 > renumber #2/Y start 274
    5624 
    5625 12 residues renumbered 
    5626 
    5627 > changechains #2/Y 4
    5628 
    5629 Chain IDs of 12 residues changed 
    5630 ['1', '5'] 
    5631 
    5632 > select #2/9
    5633 
    5634 41 atoms, 42 bonds, 5 residues, 1 model selected 
    5635 285 
    5636 286 
    5637 >1 
    5638 > renumber #2/9 start 286
    5639 
    5640 5 residues renumbered 
    5641 
    5642 > changechains #2/9 4
    5643 
    5644 Chain IDs of 5 residues changed 
    5645 ['1', '14'] 
    5646 
    5647 > select #2/c
    5648 
    5649 112 atoms, 116 bonds, 14 residues, 1 model selected 
    5650 290 
    5651 290 
    5652 >0 
    5653 
    5654 > delete #2/c:1
    5655 
    5656 > renumber #2/c start 291
    5657 
    5658 13 residues renumbered 
    5659 
    5660 > changechains #2/c 4
    5661 
    5662 Chain IDs of 13 residues changed 
    5663 ['1', '3'] 
    5664 
    5665 > select #2/Ge
    5666 
    5667 15 atoms, 14 bonds, 3 residues, 1 model selected 
    5668 303 
    5669 304 
    5670 >1 
    5671 > renumber #2/Ge start 304
    5672 
    5673 3 residues renumbered 
    5674 
    5675 > changechains #2/Ge 4
    5676 
    5677 Chain IDs of 3 residues changed 
    5678 ['1', '2'] 
    5679 
    5680 > select #2/Du
    5681 
    5682 13 atoms, 12 bonds, 2 residues, 1 model selected 
    5683 306 
    5684 309 
    5685 >3 
    5686 > renumber #2/Du start 309
    5687 
    5688 2 residues renumbered 
    5689 
    5690 > changechains #2/Du 4
    5691 
    5692 Chain IDs of 2 residues changed 
    5693 ['1', '3'] 
    5694 
    5695 > select #2/Ad
    5696 
    5697 18 atoms, 18 bonds, 3 residues, 1 model selected 
    5698 310 
    5699 311 
    5700 >1 
    5701 > renumber #2/Ad start 311
    5702 
    5703 3 residues renumbered 
    5704 
    5705 > changechains #2/Ad 4
    5706 
    5707 Chain IDs of 3 residues changed 
    5708 ['1', '7'] 
    5709 
    5710 > select #2/t
    5711 
    5712 50 atoms, 50 bonds, 7 residues, 1 model selected 
    5713 313 
    5714 314 
    5715 >1 
    5716 > renumber #2/t start 314
    5717 
    5718 7 residues renumbered 
    5719 
    5720 > changechains #2/t 4
    5721 
    5722 Chain IDs of 7 residues changed 
    5723 ['1', '32'] 
    5724 
    5725 > select #2/FU
    5726 
    5727 251 atoms, 254 bonds, 32 residues, 1 model selected 
    5728 320 
    5729 321 
    5730 >1 
    5731 > renumber #2/FU start 321
    5732 
    5733 32 residues renumbered 
    5734 
    5735 > changechains #2/FU 4
    5736 
    5737 Chain IDs of 32 residues changed 
    5738 ['1', '1'] 
    5739 
    5740 > select #2/By
    5741 
    5742 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5743 352 
    5744 353 
    5745 >1 
    5746 > renumber #2/By start 353
    5747 
    5748 1 residues renumbered 
    5749 
    5750 > changechains #2/By 4
    5751 
    5752 Chain IDs of 1 residues changed 
    5753 ['1', '2'] 
    5754 
    5755 > select #2/AH
    5756 
    5757 13 atoms, 12 bonds, 2 residues, 1 model selected 
    5758 353 
    5759 354 
    5760 >1 
    5761 > renumber #2/AH start 354
    5762 
    5763 2 residues renumbered 
    5764 
    5765 > changechains #2/AH 4
    5766 
    5767 Chain IDs of 2 residues changed 
    5768 ['9', '18'] 
    5769 
    5770 > select #2/GV
    5771 
    5772 182 atoms, 182 bonds, 24 residues, 1 model selected 
    5773 355 
    5774 356 
    5775 >1 
    5776 > renumber #2/GV start 356
    5777 
    5778 24 residues renumbered 
    5779 
    5780 > changechains #2/GV 4
    5781 
    5782 Chain IDs of 24 residues changed 
    5783 ['1', '1'] 
    5784 
    5785 > select #2/Dq
    5786 
    5787 4 atoms, 3 bonds, 1 residue, 1 model selected 
    5788 379 
    5789 380 
    5790 >1 
    5791 > renumber #2/Dq start 380
    5792 
    5793 1 residues renumbered 
    5794 
    5795 > changechains #2/Dq 4
    5796 
    5797 Chain IDs of 1 residues changed 
    5798 ['1', '4'] 
    5799 
    5800 > select #2/GT
    5801 
    5802 28 atoms, 27 bonds, 4 residues, 1 model selected 
    5803 380 
    5804 381 
    5805 >1 
    5806 > renumber #2/GT start 381
    5807 
    5808 4 residues renumbered 
    5809 
    5810 > changechains #2/GT 4
    5811 
    5812 Chain IDs of 4 residues changed 
    5813 ['1', '2'] 
    5814 
    5815 > select #2/DS
    5816 
    5817 15 atoms, 15 bonds, 2 residues, 1 model selected 
    5818 384 
    5819 387 
    5820 >3 
    5821 > renumber #2/DS start 387
    5822 
    5823 2 residues renumbered 
    5824 
    5825 > changechains #2/DS 4
    5826 
    5827 Chain IDs of 2 residues changed 
    5828 ['1', '10'] 
    5829 
    5830 > select #2/Fp
    5831 
    5832 76 atoms, 78 bonds, 10 residues, 1 model selected 
    5833 388 
    5834 389 
    5835 >1 
    5836 > renumber #2/Fp start 389
    5837 
    5838 10 residues renumbered 
    5839 
    5840 > changechains #2/Fp 4
    5841 
    5842 Chain IDs of 10 residues changed 
    5843 ['1', '5'] 
    5844 
    5845 > select #2/7
    5846 
    5847 37 atoms, 37 bonds, 5 residues, 1 model selected 
    5848 398 
    5849 399 
    5850 >1 
    5851 > renumber #2/7 start 399
    5852 
    5853 5 residues renumbered 
    5854 
    5855 > changechains #2/7 4
    5856 
    5857 Chain IDs of 5 residues changed 
    5858 ['1', '2'] 
    5859 
    5860 > select #2/8
    5861 
    5862 16 atoms, 15 bonds, 2 residues, 1 model selected 
    5863 403 
    5864 404 
    5865 >1 
    5866 > renumber #2/8 start 404
    5867 
    5868 2 residues renumbered 
    5869 
    5870 > changechains #2/8 4
    5871 
    5872 Chain IDs of 2 residues changed 
    5873 ['1', '20'] 
    5874 
    5875 > select #2/FJ
    5876 
    5877 149 atoms, 150 bonds, 20 residues, 1 model selected 
    5878 405 
    5879 407 
    5880 >2 
    5881 > renumber #2/FJ start 407
    5882 
    5883 20 residues renumbered 
    5884 
    5885 > changechains #2/FJ 4
    5886 
    5887 Chain IDs of 20 residues changed 
    5888 ['1', '7'] 
    5889 
    5890 > select #2/Fu
    5891 
    5892 53 atoms, 53 bonds, 7 residues, 1 model selected 
    5893 426 
    5894 426 
    5895 >0 
    5896 
    5897 > delete #2/Fu:1
    5898 
    5899 > renumber #2/Fu start 427
    5900 
    5901 6 residues renumbered 
    5902 
    5903 > changechains #2/Fu 4
    5904 
    5905 Chain IDs of 6 residues changed 
    5906 ['1', '1'] 
    5907 
    5908 > select #2/D6
    5909 
    5910 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5911 432 
    5912 469 
    5913 >37 
    5914 > renumber #2/D6 start 469
    5915 
    5916 1 residues renumbered 
    5917 
    5918 > changechains #2/D6 4
    5919 
    5920 Chain IDs of 1 residues changed 
    5921 ['1', '2'] 
    5922 
    5923 > select #2/Dl
    5924 
    5925 8 atoms, 7 bonds, 2 residues, 1 model selected 
    5926 469 
    5927 470 
    5928 >1 
    5929 > renumber #2/Dl start 470
    5930 
    5931 2 residues renumbered 
    5932 
    5933 > changechains #2/Dl 4
    5934 
    5935 Chain IDs of 2 residues changed 
    5936 ['1', '1'] 
    5937 
    5938 > select #2/Dk
    5939 
    5940 Nothing selected 
    5941 471 
    5942 472 
    5943 >1 
    5944 > renumber #2/Dk start 472
    5945 
    5946 Traceback (most recent call last): 
    5947 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    5948 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    5949 line 188, in   
    5950 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    5951 File
    5952 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5953 packages/chimerax/core/commands/run.py", line 49, in run 
    5954 results = command.run(text, log=log, return_json=return_json) 
    5955 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5956 File
    5957 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5958 packages/chimerax/core/commands/cli.py", line 3213, in run 
    5959 result = ci.function(session, **kw_args) 
    5960 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    5961 File
    5962 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    5963 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    5964 raise UserError("No residues specified") 
    5965 chimerax.core.errors.UserError: No residues specified 
    5966  
    5967 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    5968 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    5969 
    5970 > select #1/Dk
    5971 
    5972 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5973 
    5974 > show sel atoms
    5975 
    5976 > hide sel cartoons
    5977 
    5978 > hide sel atoms
    5979 
    5980 > close #2
    5981 
    5982 > select #1/Dk
    5983 
    5984 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5985 
    5986 > select #1/4
    5987 
    5988 50 atoms, 51 bonds, 5 residues, 1 model selected 
    5989 
    5990 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    5991 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    5992 > #1 alignmentsMod1Mod.txt
    5993 
    5994 ['1', '8'] 
    5995 ['1', '8'] 
    5996 ['11'] 
    5997 ['1', '1'] 
    5998 ['11'] 
    5999 ['1', '1'] 
    6000 ['1', '3'] 
    6001 ['1', '3'] 
    6002 ['11'] 
    6003 ['1', '1'] 
    6004 ['1', '4'] 
    6005 ['1', '4'] 
    6006 ['1', '15'] 
    6007 ['1', '15'] 
    6008 ['11'] 
    6009 ['1', '1'] 
    6010 ['1', '9'] 
    6011 ['1', '9'] 
    6012 ['1', '4'] 
    6013 ['1', '4'] 
    6014 ['1', '28'] 
    6015 ['1', '28'] 
    6016 ['1', '15'] 
    6017 ['1', '15'] 
    6018 ['7', '15'] 
    6019 ['7', '15'] 
    6020 ['2', '44'] 
    6021 ['2', '44'] 
    6022 ['1', '7'] 
    6023 ['1', '7'] 
    6024 ['1', '8'] 
    6025 ['1', '8'] 
    6026 ['1', '13'] 
    6027 ['1', '13'] 
    6028 ['11'] 
    6029 ['1', '1'] 
    6030 ['1', '31'] 
    6031 ['1', '31'] 
    6032 ['12'] 
    6033 ['1', '2'] 
    6034 ['6', '22'] 
    6035 ['6', '22'] 
    6036 ['5', '21'] 
    6037 ['5', '21'] 
    6038 ['3', '140'] 
    6039 ['3', '140'] 
    6040 ['1', '3'] 
    6041 ['1', '3'] 
    6042 ['1', '8'] 
    6043 ['1', '8'] 
    6044 ['2', '18'] 
    6045 ['2', '18'] 
    6046 ['1', '7'] 
    6047 ['1', '7'] 
    6048 ['7', '12'] 
    6049 ['7', '12'] 
    6050 ['1', '10'] 
    6051 ['1', '10'] 
    6052 ['12'] 
    6053 ['1', '2'] 
    6054 ['1', '10'] 
    6055 ['1', '10'] 
    6056 ['4', '63'] 
    6057 ['4', '63'] 
    6058 ['9', '11'] 
    6059 ['9', '11'] 
    6060 ['11'] 
    6061 ['1', '1'] 
    6062 ['1', '5'] 
    6063 ['1', '5'] 
    6064 ['5', '33'] 
    6065 ['5', '33'] 
    6066 ['1', '4'] 
    6067 ['1', '4'] 
    6068 ['1', '74'] 
    6069 ['1', '74'] 
    6070 ['3', '18'] 
    6071 ['3', '18'] 
    6072 ['2', '22'] 
    6073 ['2', '22'] 
    6074 ['1', '4'] 
    6075 ['1', '4'] 
    6076 ['1', '3'] 
    6077 ['1', '3'] 
    6078 ['2', '81'] 
    6079 ['2', '81'] 
    6080 ['1', '8'] 
    6081 ['1', '8'] 
    6082 ['1', '5'] 
    6083 ['1', '5'] 
    6084 ['14', '47'] 
    6085 ['14', '47'] 
    6086 ['1', '5'] 
    6087 ['1', '5'] 
    6088 ['1', '3'] 
    6089 ['1', '3'] 
    6090 ['11'] 
    6091 ['1', '1'] 
    6092 ['1', '7'] 
    6093 ['1', '7'] 
    6094 ['1', '14'] 
    6095 ['1', '14'] 
    6096 ['1', '5'] 
    6097 ['1', '5'] 
    6098 ['1', '4'] 
    6099 ['1', '4'] 
    6100 ['1', '7'] 
    6101 ['1', '7'] 
    6102 ['1', '14'] 
    6103 ['1', '14'] 
    6104 ['1', '25'] 
    6105 ['1', '25'] 
    6106 ['1', '20'] 
    6107 ['1', '20'] 
    6108 ['1', '8'] 
    6109 ['1', '8'] 
    6110 ['11'] 
    6111 ['1', '1'] 
    6112 ['12'] 
    6113 ['1', '2'] 
    6114 ['12'] 
    6115 ['1', '2'] 
    6116 ['1', '18'] 
    6117 ['1', '18'] 
    6118 ['1', '70'] 
    6119 ['1', '70'] 
    6120 ['12'] 
    6121 ['1', '2'] 
    6122 ['12'] 
    6123 ['1', '2'] 
    6124 ['1', '12'] 
    6125 ['1', '12'] 
    6126 ['1', '5'] 
    6127 ['1', '5'] 
    6128 ['1', '14'] 
    6129 ['1', '14'] 
    6130 ['1', '3'] 
    6131 ['1', '3'] 
    6132 ['12'] 
    6133 ['1', '2'] 
    6134 ['1', '3'] 
    6135 ['1', '3'] 
    6136 ['1', '7'] 
    6137 ['1', '7'] 
    6138 ['1', '32'] 
    6139 ['1', '32'] 
    6140 ['11'] 
    6141 ['1', '1'] 
    6142 ['12'] 
    6143 ['1', '2'] 
    6144 ['9', '18'] 
    6145 ['9', '18'] 
    6146 ['11'] 
    6147 ['1', '1'] 
    6148 ['1', '4'] 
    6149 ['1', '4'] 
    6150 ['12'] 
    6151 ['1', '2'] 
    6152 ['1', '10'] 
    6153 ['1', '10'] 
    6154 ['1', '5'] 
    6155 ['1', '5'] 
    6156 ['12'] 
    6157 ['1', '2'] 
    6158 ['1', '20'] 
    6159 ['1', '20'] 
    6160 ['1', '7'] 
    6161 ['1', '7'] 
    6162 ['11'] 
    6163 ['1', '1'] 
    6164 ['12'] 
    6165 ['1', '2'] 
    6166 ['11'] 
    6167 ['1', '1'] 
    6168 ['11'] 
    6169 ['1', '1'] 
    6170 ['12'] 
    6171 ['1', '2'] 
    6172 ['1', '3'] 
    6173 ['1', '3'] 
    6174 ['11', '32'] 
    6175 ['11', '32'] 
    6176 ['1', '12'] 
    6177 ['1', '12'] 
    6178 ['1', '3'] 
    6179 ['1', '3'] 
    6180 ['2', '15'] 
    6181 ['2', '15'] 
    6182 ['11'] 
    6183 ['1', '1'] 
    6184 ['11'] 
    6185 ['1', '1'] 
    6186 ['1', '153'] 
    6187 ['1', '153'] 
    6188 ['11'] 
    6189 ['1', '1'] 
    6190 ['1', '39'] 
    6191 ['1', '39'] 
    6192 ['1', '27'] 
    6193 ['1', '27'] 
    6194 ['1', '37'] 
    6195 ['1', '37'] 
    6196 ['12'] 
    6197 ['1', '2'] 
    6198 ['11'] 
    6199 ['1', '1'] 
    6200 ['11'] 
    6201 ['1', '1'] 
    6202 ['1', '56'] 
    6203 ['1', '56'] 
    6204 ['1', '9'] 
    6205 ['1', '9'] 
    6206 ['1', '4'] 
    6207 ['1', '4'] 
    6208 ['12'] 
    6209 ['1', '2'] 
    6210 ['1', '3'] 
    6211 ['1', '3'] 
    6212 ['12'] 
    6213 ['1', '2'] 
    6214 ['11'] 
    6215 ['1', '1'] 
    6216 ['1', '10'] 
    6217 ['1', '10'] 
    6218 ['1', '4'] 
    6219 ['1', '4'] 
    6220 ['11'] 
    6221 ['1', '1'] 
    6222 ['12'] 
    6223 ['1', '2'] 
    6224 ['1', '30'] 
    6225 ['1', '30'] 
    6226 ['3', '45'] 
    6227 ['3', '45'] 
    6228 ['1', '9'] 
    6229 ['1', '9'] 
    6230 ['2', '4'] 
    6231 ['2', '4'] 
    6232 ['12'] 
    6233 ['1', '2'] 
    6234 ['1', '59'] 
    6235 ['1', '59'] 
    6236 ['1', '13'] 
    6237 ['1', '13'] 
    6238 ['1', '34'] 
    6239 ['1', '34'] 
    6240 ['1', '5'] 
    6241 ['1', '5'] 
    6242 ['3', '25'] 
    6243 ['3', '25'] 
    6244 ['1', '4'] 
    6245 ['1', '4'] 
    6246 ['1', '3'] 
    6247 ['1', '3'] 
    6248 ['6', '20'] 
    6249 ['6', '20'] 
    6250 ['1', '11'] 
    6251 ['1', '11'] 
    6252 ['3', '39'] 
    6253 ['3', '39'] 
    6254 ['1', '27'] 
    6255 ['1', '27'] 
    6256 ['1', '21'] 
    6257 ['1', '21'] 
    6258 ['11'] 
    6259 ['1', '1'] 
    6260 ['1', '4'] 
    6261 ['1', '4'] 
    6262 ['2', '33'] 
    6263 ['2', '33'] 
    6264 ['11'] 
    6265 ['1', '1'] 
    6266 ['11'] 
    6267 ['1', '1'] 
    6268 ['12'] 
    6269 ['1', '2'] 
    6270 ['11'] 
    6271 ['1', '1'] 
    6272 ['11'] 
    6273 ['1', '1'] 
    6274 ['1', '8'] 
    6275 ['1', '8'] 
    6276 LtaP35.1590.mRNA_A 
    6277 LtaP35.1450.mRNA_A 
    6278 LtaP07.0060.mRNA_A 
    6279 LtaP32.3800.mRNA_A 
    6280 LtaP13.0770.mRNA_A 
    6281 sp|P14548.2|CYB_LEITA_A 
    6282 LtaP35.0210.mRNA_A 
    6283 GET91263.1_A 
    6284 LtaP35.0250.mRNA_A 
    6285 GET89654.1_A 
    6286 
    6287 > combine #1 close false name renamedAndRenumberedModel
    6288 
    6289 Renumering chain LtaP35.1590.mRNA_A 
    6290 ['1', '8'] 
    6291 
    6292 > select #2/GC
    6293 
    6294 66 atoms, 66 bonds, 8 residues, 1 model selected 
    6295 0 
    6296 17 
    6297 >17 
    6298 > renumber #2/GC start 17
    6299 
    6300 8 residues renumbered 
    6301 ['1', '1'] 
    6302 
    6303 > select #2/Bd
    6304 
    6305 4 atoms, 3 bonds, 1 residue, 1 model selected 
    6306 24 
    6307 25 
    6308 >1 
    6309 > renumber #2/Bd start 25
    6310 
    6311 1 residues renumbered 
    6312 
    6313 > changechains #2/Bd GC
    6314 
    6315 Chain IDs of 1 residues changed 
    6316 ['1', '1'] 
    6317 
    6318 > select #2/Ca
    6319 
    6320 4 atoms, 3 bonds, 1 residue, 1 model selected 
    6321 25 
    6322 26 
    6323 >1 
    6324 > renumber #2/Ca start 26
    6325 
    6326 1 residues renumbered 
    6327 
    6328 > changechains #2/Ca GC
    6329 
    6330 Chain IDs of 1 residues changed 
    6331 ['1', '3'] 
    6332 
    6333 > select #2/AP
    6334 
    6335 19 atoms, 19 bonds, 3 residues, 1 model selected 
    6336 26 
    6337 27 
    6338 >1 
    6339 > renumber #2/AP start 27
    6340 
    6341 3 residues renumbered 
    6342 
    6343 > changechains #2/AP GC
    6344 
    6345 Chain IDs of 3 residues changed 
    6346 ['1', '1'] 
    6347 
    6348 > select #2/BN
    6349 
    6350 6 atoms, 5 bonds, 1 residue, 1 model selected 
    6351 29 
    6352 30 
    6353 >1 
    6354 > renumber #2/BN start 30
    6355 
    6356 1 residues renumbered 
    6357 
    6358 > changechains #2/BN GC
    6359 
    6360 Chain IDs of 1 residues changed 
    6361 ['1', '4'] 
    6362 
    6363 > select #2/FF
    6364 
    6365 32 atoms, 32 bonds, 4 residues, 1 model selected 
    6366 30 
    6367 31 
    6368 >1 
    6369 > renumber #2/FF start 31
    6370 
    6371 4 residues renumbered 
    6372 
    6373 > changechains #2/FF GC
    6374 
    6375 Chain IDs of 4 residues changed 
    6376 ['1', '15'] 
    6377 
    6378 > select #2/Fo
    6379 
    6380 103 atoms, 106 bonds, 15 residues, 1 model selected 
    6381 34 
    6382 35 
    6383 >1 
    6384 > renumber #2/Fo start 35
    6385 
    6386 15 residues renumbered 
    6387 
    6388 > changechains #2/Fo GC
    6389 
    6390 Chain IDs of 15 residues changed 
    6391 ['1', '1'] 
    6392 
    6393 > select #2/Cy
    6394 
    6395 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6396 49 
    6397 50 
    6398 >1 
    6399 > renumber #2/Cy start 50
    6400 
    6401 1 residues renumbered 
    6402 
    6403 > changechains #2/Cy GC
    6404 
    6405 Chain IDs of 1 residues changed 
    6406 ['1', '9'] 
    6407 
    6408 > select #2/EY
    6409 
    6410 66 atoms, 67 bonds, 9 residues, 1 model selected 
    6411 50 
    6412 51 
    6413 >1 
    6414 > renumber #2/EY start 51
    6415 
    6416 9 residues renumbered 
    6417 
    6418 > changechains #2/EY GC
    6419 
    6420 Chain IDs of 9 residues changed 
    6421 ['1', '4'] 
    6422 
    6423 > select #2/FV
    6424 
    6425 24 atoms, 23 bonds, 4 residues, 1 model selected 
    6426 59 
    6427 60 
    6428 >1 
    6429 > renumber #2/FV start 60
    6430 
    6431 4 residues renumbered 
    6432 
    6433 > changechains #2/FV GC
    6434 
    6435 Chain IDs of 4 residues changed 
    6436 ['1', '28'] 
    6437 
    6438 > select #2/Ey
    6439 
    6440 210 atoms, 213 bonds, 28 residues, 1 model selected 
    6441 63 
    6442 64 
    6443 >1 
    6444 > renumber #2/Ey start 64
    6445 
    6446 28 residues renumbered 
    6447 
    6448 > changechains #2/Ey GC
    6449 
    6450 Chain IDs of 28 residues changed 
    6451 ['1', '15'] 
    6452 
    6453 > select #2/K
    6454 
    6455 102 atoms, 102 bonds, 15 residues, 1 model selected 
    6456 91 
    6457 92 
    6458 >1 
    6459 > renumber #2/K start 92
    6460 
    6461 15 residues renumbered 
    6462 
    6463 > changechains #2/K GC
    6464 
    6465 Chain IDs of 15 residues changed 
    6466 ['7', '15'] 
    6467 
    6468 > select #2/L
    6469 
    6470 184 atoms, 187 bonds, 22 residues, 1 model selected 
    6471 106 
    6472 107 
    6473 >1 
    6474 > renumber #2/L start 107
    6475 
    6476 22 residues renumbered 
    6477 
    6478 > changechains #2/L GC
    6479 
    6480 Chain IDs of 22 residues changed 
    6481 ['2', '44'] 
    6482 
    6483 > select #2/Ee
    6484 
    6485 355 atoms, 363 bonds, 44 residues, 1 model selected 
    6486 128 
    6487 129 
    6488 >1 
    6489 > renumber #2/Ee start 129
    6490 
    6491 44 residues renumbered 
    6492 
    6493 > changechains #2/Ee GC
    6494 
    6495 Chain IDs of 44 residues changed 
    6496 Renumering chain LtaP35.1450.mRNA_A 
    6497 ['1', '7'] 
    6498 
    6499 > select #2/Gc
    6500 
    6501 52 atoms, 52 bonds, 7 residues, 1 model selected 
    6502 0 
    6503 2 
    6504 >2 
    6505 > renumber #2/Gc start 2
    6506 
    6507 7 residues renumbered 
    6508 ['1', '8'] 
    6509 
    6510 > select #2/Ex
    6511 
    6512 55 atoms, 56 bonds, 8 residues, 1 model selected 
    6513 8 
    6514 10 
    6515 >2 
    6516 > renumber #2/Ex start 10
    6517 
    6518 8 residues renumbered 
    6519 
    6520 > changechains #2/Ex Gc
    6521 
    6522 Chain IDs of 8 residues changed 
    6523 ['1', '13'] 
    6524 
    6525 > select #2/E6
    6526 
    6527 98 atoms, 100 bonds, 13 residues, 1 model selected 
    6528 17 
    6529 18 
    6530 >1 
    6531 > renumber #2/E6 start 18
    6532 
    6533 13 residues renumbered 
    6534 
    6535 > changechains #2/E6 Gc
    6536 
    6537 Chain IDs of 13 residues changed 
    6538 ['1', '1'] 
    6539 
    6540 > select #2/Ai
    6541 
    6542 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6543 30 
    6544 31 
    6545 >1 
    6546 > renumber #2/Ai start 31
    6547 
    6548 1 residues renumbered 
    6549 
    6550 > changechains #2/Ai Gc
    6551 
    6552 Chain IDs of 1 residues changed 
    6553 ['1', '31'] 
    6554 
    6555 > select #2/0
    6556 
    6557 233 atoms, 235 bonds, 31 residues, 1 model selected 
    6558 31 
    6559 32 
    6560 >1 
    6561 > renumber #2/0 start 32
    6562 
    6563 31 residues renumbered 
    6564 
    6565 > changechains #2/0 Gc
    6566 
    6567 Chain IDs of 31 residues changed 
    6568 ['1', '2'] 
    6569 
    6570 > select #2/U
    6571 
    6572 11 atoms, 10 bonds, 2 residues, 1 model selected 
    6573 62 
    6574 63 
    6575 >1 
    6576 > renumber #2/U start 63
    6577 
    6578 2 residues renumbered 
    6579 
    6580 > changechains #2/U Gc
    6581 
    6582 Chain IDs of 2 residues changed 
    6583 ['6', '22'] 
    6584 
    6585 > select #2/d
    6586 
    6587 176 atoms, 182 bonds, 22 residues, 1 model selected 
    6588 64 
    6589 65 
    6590 >1 
    6591 > renumber #2/d start 65
    6592 
    6593 22 residues renumbered 
    6594 
    6595 > changechains #2/d Gc
    6596 
    6597 Chain IDs of 22 residues changed 
    6598 ['5', '21'] 
    6599 
    6600 > select #2/EV
    6601 
    6602 161 atoms, 160 bonds, 21 residues, 1 model selected 
    6603 86 
    6604 87 
    6605 >1 
    6606 > renumber #2/EV start 87
    6607 
    6608 21 residues renumbered 
    6609 
    6610 > changechains #2/EV Gc
    6611 
    6612 Chain IDs of 21 residues changed 
    6613 
    6614 > delete #2/Ew:132
    6615 
    6616 > renumber #2/Ew:133-9999999 start 132
    6617 
    6618 11 residues renumbered 
    6619 ['3', '139'] 
    6620 
    6621 > select #2/Ew
    6622 
    6623 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    6624 107 
    6625 108 
    6626 >1 
    6627 > renumber #2/Ew start 108
    6628 
    6629 142 residues renumbered 
    6630 
    6631 > changechains #2/Ew Gc
    6632 
    6633 Chain IDs of 142 residues changed 
    6634 ['1', '3'] 
    6635 
    6636 > select #2/GO
    6637 
    6638 18 atoms, 18 bonds, 3 residues, 1 model selected 
    6639 249 
    6640 250 
    6641 >1 
    6642 > renumber #2/GO start 250
    6643 
    6644 3 residues renumbered 
    6645 
    6646 > changechains #2/GO Gc
    6647 
    6648 Chain IDs of 3 residues changed 
    6649 ['1', '8'] 
    6650 
    6651 > select #2/Z
    6652 
    6653 69 atoms, 71 bonds, 8 residues, 1 model selected 
    6654 252 
    6655 253 
    6656 >1 
    6657 > renumber #2/Z start 253
    6658 
    6659 8 residues renumbered 
    6660 
    6661 > changechains #2/Z Gc
    6662 
    6663 Chain IDs of 8 residues changed 
    6664 ['2', '18'] 
    6665 
    6666 > select #2/ES
    6667 
    6668 163 atoms, 164 bonds, 18 residues, 1 model selected 
    6669 260 
    6670 262 
    6671 >2 
    6672 > renumber #2/ES start 262
    6673 
    6674 18 residues renumbered 
    6675 
    6676 > changechains #2/ES Gc
    6677 
    6678 Chain IDs of 18 residues changed 
    6679 ['1', '7'] 
    6680 
    6681 > select #2/Fc
    6682 
    6683 40 atoms, 41 bonds, 7 residues, 1 model selected 
    6684 279 
    6685 282 
    6686 >3 
    6687 > renumber #2/Fc start 282
    6688 
    6689 7 residues renumbered 
    6690 
    6691 > changechains #2/Fc Gc
    6692 
    6693 Chain IDs of 7 residues changed 
    6694 ['7', '12'] 
    6695 
    6696 > select #2/Fa
    6697 
    6698 177 atoms, 179 bonds, 24 residues, 1 model selected 
    6699 288 
    6700 289 
    6701 >1 
    6702 > renumber #2/Fa start 289
    6703 
    6704 24 residues renumbered 
    6705 
    6706 > changechains #2/Fa Gc
    6707 
    6708 Chain IDs of 24 residues changed 
    6709 ['1', '10'] 
    6710 
    6711 > select #2/2
    6712 
    6713 81 atoms, 83 bonds, 10 residues, 1 model selected 
    6714 312 
    6715 314 
    6716 >2 
    6717 > renumber #2/2 start 314
    6718 
    6719 10 residues renumbered 
    6720 
    6721 > changechains #2/2 Gc
    6722 
    6723 Chain IDs of 10 residues changed 
    6724 ['1', '2'] 
    6725 
    6726 > select #2/E
    6727 
    6728 16 atoms, 16 bonds, 2 residues, 1 model selected 
    6729 323 
    6730 326 
    6731 >3 
    6732 > renumber #2/E start 326
    6733 
    6734 2 residues renumbered 
    6735 
    6736 > changechains #2/E Gc
    6737 
    6738 Chain IDs of 2 residues changed 
    6739 ['1', '10'] 
    6740 
    6741 > select #2/Ff
    6742 
    6743 75 atoms, 76 bonds, 10 residues, 1 model selected 
    6744 327 
    6745 328 
    6746 >1 
    6747 > renumber #2/Ff start 328
    6748 
    6749 10 residues renumbered 
    6750 
    6751 > changechains #2/Ff Gc
    6752 
    6753 Chain IDs of 10 residues changed 
    6754 ['4', '63'] 
    6755 
    6756 > select #2/E2
    6757 
    6758 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    6759 337 
    6760 338 
    6761 >1 
    6762 > renumber #2/E2 start 338
    6763 
    6764 132 residues renumbered 
    6765 
    6766 > changechains #2/E2 Gc
    6767 
    6768 Chain IDs of 132 residues changed 
    6769 ['9', '11'] 
    6770 
    6771 > select #2/W
    6772 
    6773 182 atoms, 189 bonds, 20 residues, 1 model selected 
    6774 469 
    6775 470 
    6776 >1 
    6777 > renumber #2/W start 470
    6778 
    6779 20 residues renumbered 
    6780 
    6781 > changechains #2/W Gc
    6782 
    6783 Chain IDs of 20 residues changed 
    6784 ['1', '1'] 
    6785 
    6786 > select #2/BM
    6787 
    6788 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6789 489 
    6790 490 
    6791 >1 
    6792 > renumber #2/BM start 490
    6793 
    6794 1 residues renumbered 
    6795 
    6796 > changechains #2/BM Gc
    6797 
    6798 Chain IDs of 1 residues changed 
    6799 Renumering chain LtaP07.0060.mRNA_A 
    6800 ['1', '5'] 
    6801 
    6802 > select #2/A
    6803 
    6804 32 atoms, 33 bonds, 5 residues, 1 model selected 
    6805 0 
    6806 5 
    6807 >5 
    6808 > renumber #2/A start 5
    6809 
    6810 5 residues renumbered 
    6811 ['5', '33'] 
    6812 
    6813 > select #2/Fd
    6814 
    6815 314 atoms, 324 bonds, 36 residues, 1 model selected 
    6816 9 
    6817 10 
    6818 >1 
    6819 > renumber #2/Fd start 10
    6820 
    6821 36 residues renumbered 
    6822 
    6823 > changechains #2/Fd A
    6824 
    6825 Chain IDs of 36 residues changed 
    6826 ['1', '4'] 
    6827 
    6828 > select #2/Ef
    6829 
    6830 24 atoms, 23 bonds, 4 residues, 1 model selected 
    6831 45 
    6832 46 
    6833 >1 
    6834 > renumber #2/Ef start 46
    6835 
    6836 4 residues renumbered 
    6837 
    6838 > changechains #2/Ef A
    6839 
    6840 Chain IDs of 4 residues changed 
    6841 ['1', '74'] 
    6842 
    6843 > select #2/Eg
    6844 
    6845 577 atoms, 589 bonds, 74 residues, 1 model selected 
    6846 49 
    6847 50 
    6848 >1 
    6849 > renumber #2/Eg start 50
    6850 
    6851 74 residues renumbered 
    6852 
    6853 > changechains #2/Eg A
    6854 
    6855 Chain IDs of 74 residues changed 
    6856 ['3', '18'] 
    6857 
    6858 > select #2/j
    6859 
    6860 160 atoms, 162 bonds, 22 residues, 1 model selected 
    6861 123 
    6862 124 
    6863 >1 
    6864 > renumber #2/j start 124
    6865 
    6866 22 residues renumbered 
    6867 
    6868 > changechains #2/j A
    6869 
    6870 Chain IDs of 22 residues changed 
    6871 
    6872 > renumber #2/Ei:7-9999999 start 8
    6873 
    6874 19 residues renumbered 
    6875 
    6876 > ~bond #2/Ei:6@C #2/Ei:8@N
    6877 
    6878 ['2', '21'] 
    6879 
    6880 > select #2/Ei
    6881 
    6882 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    6883 145 
    6884 145 
    6885 >0 
    6886 
    6887 > delete #2/Ei:1
    6888 
    6889 > renumber #2/Ei start 146
    6890 
    6891 24 residues renumbered 
    6892 
    6893 > changechains #2/Ei A
    6894 
    6895 Chain IDs of 24 residues changed 
    6896 ['1', '4'] 
    6897 
    6898 > select #2/Bi
    6899 
    6900 23 atoms, 22 bonds, 4 residues, 1 model selected 
    6901 170 
    6902 168 
    6903 >-2 
    6904 
    6905 > delete #2/Bi:3
    6906 
    6907 > delete #2/Bi:2
    6908 
    6909 > delete #2/Bi:1
    6910 
    6911 > renumber #2/Bi start 171
    6912 
    6913 1 residues renumbered 
    6914 
    6915 > changechains #2/Bi A
    6916 
    6917 Chain IDs of 1 residues changed 
    6918 ['1', '3'] 
    6919 
    6920 > select #2/GM
    6921 
    6922 21 atoms, 20 bonds, 3 residues, 1 model selected 
    6923 171 
    6924 171 
    6925 >0 
    6926 
    6927 > delete #2/GM:1
    6928 
    6929 > renumber #2/GM start 172
    6930 
    6931 2 residues renumbered 
    6932 
    6933 > changechains #2/GM A
    6934 
    6935 Chain IDs of 2 residues changed 
    6936 ['2', '81'] 
    6937 
    6938 > select #2/E8
    6939 
    6940 695 atoms, 717 bonds, 86 residues, 1 model selected 
    6941 173 
    6942 174 
    6943 >1 
    6944 > renumber #2/E8 start 174
    6945 
    6946 86 residues renumbered 
    6947 
    6948 > changechains #2/E8 A
    6949 
    6950 Chain IDs of 86 residues changed 
    6951 Renumering chain LtaP32.3800.mRNA_A 
    6952 ['1', '8'] 
    6953 
    6954 > select #2/N
    6955 
    6956 66 atoms, 69 bonds, 8 residues, 1 model selected 
    6957 0 
    6958 34 
    6959 >34 
    6960 > renumber #2/N start 34
    6961 
    6962 8 residues renumbered 
    6963 ['1', '5'] 
    6964 
    6965 > select #2/GZ
    6966 
    6967 35 atoms, 34 bonds, 5 residues, 1 model selected 
    6968 41 
    6969 42 
    6970 >1 
    6971 > renumber #2/GZ start 42
    6972 
    6973 5 residues renumbered 
    6974 
    6975 > changechains #2/GZ N
    6976 
    6977 Chain IDs of 5 residues changed 
    6978 ['14', '47'] 
    6979 
    6980 > select #2/FT
    6981 
    6982 810 atoms, 833 bonds, 101 residues, 1 model selected 
    6983 46 
    6984 47 
    6985 >1 
    6986 > renumber #2/FT start 47
    6987 
    6988 101 residues renumbered 
    6989 
    6990 > changechains #2/FT N
    6991 
    6992 Chain IDs of 101 residues changed 
    6993 Renumering chain LtaP13.0770.mRNA_A 
    6994 ['1', '5'] 
    6995 
    6996 > select #2/4
    6997 
    6998 50 atoms, 51 bonds, 5 residues, 1 model selected 
    6999 0 
    7000 25 
    7001 >25 
    7002 > renumber #2/4 start 25
    7003 
    7004 5 residues renumbered 
    7005 ['1', '3'] 
    7006 
    7007 > select #2/D
    7008 
    7009 20 atoms, 20 bonds, 3 residues, 1 model selected 
    7010 29 
    7011 30 
    7012 >1 
    7013 > renumber #2/D start 30
    7014 
    7015 3 residues renumbered 
    7016 
    7017 > changechains #2/D 4
    7018 
    7019 Chain IDs of 3 residues changed 
    7020 ['1', '1'] 
    7021 
    7022 > select #2/CN
    7023 
    7024 6 atoms, 5 bonds, 1 residue, 1 model selected 
    7025 32 
    7026 33 
    7027 >1 
    7028 > renumber #2/CN start 33
    7029 
    7030 1 residues renumbered 
    7031 
    7032 > changechains #2/CN 4
    7033 
    7034 Chain IDs of 1 residues changed 
    7035 ['1', '7'] 
    7036 
    7037 > select #2/FG
    7038 
    7039 48 atoms, 48 bonds, 7 residues, 1 model selected 
    7040 33 
    7041 34 
    7042 >1 
    7043 > renumber #2/FG start 34
    7044 
    7045 7 residues renumbered 
    7046 
    7047 > changechains #2/FG 4
    7048 
    7049 Chain IDs of 7 residues changed 
    7050 ['1', '14'] 
    7051 
    7052 > select #2/GH
    7053 
    7054 92 atoms, 92 bonds, 14 residues, 1 model selected 
    7055 40 
    7056 57 
    7057 >17 
    7058 > renumber #2/GH start 57
    7059 
    7060 14 residues renumbered 
    7061 
    7062 > changechains #2/GH 4
    7063 
    7064 Chain IDs of 14 residues changed 
    7065 ['1', '5'] 
    7066 
    7067 > select #2/GW
    7068 
    7069 46 atoms, 46 bonds, 5 residues, 1 model selected 
    7070 70 
    7071 71 
    7072 >1 
    7073 > renumber #2/GW start 71
    7074 
    7075 5 residues renumbered 
    7076 
    7077 > changechains #2/GW 4
    7078 
    7079 Chain IDs of 5 residues changed 
    7080 ['1', '4'] 
    7081 
    7082 > select #2/Fj
    7083 
    7084 24 atoms, 23 bonds, 4 residues, 1 model selected 
    7085 75 
    7086 76 
    7087 >1 
    7088 > renumber #2/Fj start 76
    7089 
    7090 4 residues renumbered 
    7091 
    7092 > changechains #2/Fj 4
    7093 
    7094 Chain IDs of 4 residues changed 
    7095 ['1', '7'] 
    7096 
    7097 > select #2/E4
    7098 
    7099 48 atoms, 48 bonds, 7 residues, 1 model selected 
    7100 79 
    7101 80 
    7102 >1 
    7103 > renumber #2/E4 start 80
    7104 
    7105 7 residues renumbered 
    7106 
    7107 > changechains #2/E4 4
    7108 
    7109 Chain IDs of 7 residues changed 
    7110 ['1', '14'] 
    7111 
    7112 > select #2/Er
    7113 
    7114 99 atoms, 102 bonds, 14 residues, 1 model selected 
    7115 86 
    7116 87 
    7117 >1 
    7118 > renumber #2/Er start 87
    7119 
    7120 14 residues renumbered 
    7121 
    7122 > changechains #2/Er 4
    7123 
    7124 Chain IDs of 14 residues changed 
    7125 ['1', '25'] 
    7126 
    7127 > select #2/ER
    7128 
    7129 208 atoms, 211 bonds, 25 residues, 1 model selected 
    7130 100 
    7131 101 
    7132 >1 
    7133 > renumber #2/ER start 101
    7134 
    7135 25 residues renumbered 
    7136 
    7137 > changechains #2/ER 4
    7138 
    7139 Chain IDs of 25 residues changed 
    7140 ['1', '20'] 
    7141 
    7142 > select #2/Fz
    7143 
    7144 146 atoms, 147 bonds, 20 residues, 1 model selected 
    7145 125 
    7146 124 
    7147 >-1 
    7148 
    7149 > delete #2/Fz:2
    7150 
    7151 > delete #2/Fz:1
    7152 
    7153 > renumber #2/Fz start 126
    7154 
    7155 18 residues renumbered 
    7156 
    7157 > changechains #2/Fz 4
    7158 
    7159 Chain IDs of 18 residues changed 
    7160 ['1', '8'] 
    7161 
    7162 > select #2/p
    7163 
    7164 62 atoms, 62 bonds, 8 residues, 1 model selected 
    7165 143 
    7166 144 
    7167 >1 
    7168 > renumber #2/p start 144
    7169 
    7170 8 residues renumbered 
    7171 
    7172 > changechains #2/p 4
    7173 
    7174 Chain IDs of 8 residues changed 
    7175 ['1', '1'] 
    7176 
    7177 > select #2/Dk
    7178 
    7179 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7180 151 
    7181 152 
    7182 >1 
    7183 > renumber #2/Dk start 152
    7184 
    7185 1 residues renumbered 
    7186 
    7187 > changechains #2/Dk 4
    7188 
    7189 Chain IDs of 1 residues changed 
    7190 ['1', '2'] 
    7191 
    7192 > select #2/Bz
    7193 
    7194 16 atoms, 15 bonds, 2 residues, 1 model selected 
    7195 152 
    7196 153 
    7197 >1 
    7198 > renumber #2/Bz start 153
    7199 
    7200 2 residues renumbered 
    7201 
    7202 > changechains #2/Bz 4
    7203 
    7204 Chain IDs of 2 residues changed 
    7205 ['1', '2'] 
    7206 
    7207 > select #2/Br
    7208 
    7209 11 atoms, 10 bonds, 2 residues, 1 model selected 
    7210 154 
    7211 155 
    7212 >1 
    7213 > renumber #2/Br start 155
    7214 
    7215 2 residues renumbered 
    7216 
    7217 > changechains #2/Br 4
    7218 
    7219 Chain IDs of 2 residues changed 
    7220 ['1', '18'] 
    7221 
    7222 > select #2/F6
    7223 
    7224 144 atoms, 146 bonds, 18 residues, 1 model selected 
    7225 156 
    7226 181 
    7227 >25 
    7228 > renumber #2/F6 start 181
    7229 
    7230 18 residues renumbered 
    7231 
    7232 > changechains #2/F6 4
    7233 
    7234 Chain IDs of 18 residues changed 
    7235 ['1', '70'] 
    7236 
    7237 > select #2/q
    7238 
    7239 576 atoms, 590 bonds, 70 residues, 1 model selected 
    7240 198 
    7241 200 
    7242 >2 
    7243 > renumber #2/q start 200
    7244 
    7245 70 residues renumbered 
    7246 
    7247 > changechains #2/q 4
    7248 
    7249 Chain IDs of 70 residues changed 
    7250 ['1', '2'] 
    7251 
    7252 > select #2/Aw
    7253 
    7254 14 atoms, 13 bonds, 2 residues, 1 model selected 
    7255 269 
    7256 270 
    7257 >1 
    7258 > renumber #2/Aw start 270
    7259 
    7260 2 residues renumbered 
    7261 
    7262 > changechains #2/Aw 4
    7263 
    7264 Chain IDs of 2 residues changed 
    7265 ['1', '2'] 
    7266 
    7267 > select #2/X
    7268 
    7269 12 atoms, 11 bonds, 2 residues, 1 model selected 
    7270 271 
    7271 272 
    7272 >1 
    7273 > renumber #2/X start 272
    7274 
    7275 2 residues renumbered 
    7276 
    7277 > changechains #2/X 4
    7278 
    7279 Chain IDs of 2 residues changed 
    7280 ['1', '12'] 
    7281 
    7282 > select #2/Y
    7283 
    7284 92 atoms, 95 bonds, 12 residues, 1 model selected 
    7285 273 
    7286 274 
    7287 >1 
    7288 > renumber #2/Y start 274
    7289 
    7290 12 residues renumbered 
    7291 
    7292 > changechains #2/Y 4
    7293 
    7294 Chain IDs of 12 residues changed 
    7295 ['1', '5'] 
    7296 
    7297 > select #2/9
    7298 
    7299 41 atoms, 42 bonds, 5 residues, 1 model selected 
    7300 285 
    7301 286 
    7302 >1 
    7303 > renumber #2/9 start 286
    7304 
    7305 5 residues renumbered 
    7306 
    7307 > changechains #2/9 4
    7308 
    7309 Chain IDs of 5 residues changed 
    7310 ['1', '14'] 
    7311 
    7312 > select #2/c
    7313 
    7314 112 atoms, 116 bonds, 14 residues, 1 model selected 
    7315 290 
    7316 290 
    7317 >0 
    7318 
    7319 > delete #2/c:1
    7320 
    7321 > renumber #2/c start 291
    7322 
    7323 13 residues renumbered 
    7324 
    7325 > changechains #2/c 4
    7326 
    7327 Chain IDs of 13 residues changed 
    7328 ['1', '3'] 
    7329 
    7330 > select #2/Ge
    7331 
    7332 15 atoms, 14 bonds, 3 residues, 1 model selected 
    7333 303 
    7334 304 
    7335 >1 
    7336 > renumber #2/Ge start 304
    7337 
    7338 3 residues renumbered 
    7339 
    7340 > changechains #2/Ge 4
    7341 
    7342 Chain IDs of 3 residues changed 
    7343 ['1', '2'] 
    7344 
    7345 > select #2/Du
    7346 
    7347 13 atoms, 12 bonds, 2 residues, 1 model selected 
    7348 306 
    7349 309 
    7350 >3 
    7351 > renumber #2/Du start 309
    7352 
    7353 2 residues renumbered 
    7354 
    7355 > changechains #2/Du 4
    7356 
    7357 Chain IDs of 2 residues changed 
    7358 ['1', '3'] 
    7359 
    7360 > select #2/Ad
    7361 
    7362 18 atoms, 18 bonds, 3 residues, 1 model selected 
    7363 310 
    7364 311 
    7365 >1 
    7366 > renumber #2/Ad start 311
    7367 
    7368 3 residues renumbered 
    7369 
    7370 > changechains #2/Ad 4
    7371 
    7372 Chain IDs of 3 residues changed 
    7373 ['1', '7'] 
    7374 
    7375 > select #2/t
    7376 
    7377 50 atoms, 50 bonds, 7 residues, 1 model selected 
    7378 313 
    7379 314 
    7380 >1 
    7381 > renumber #2/t start 314
    7382 
    7383 7 residues renumbered 
    7384 
    7385 > changechains #2/t 4
    7386 
    7387 Chain IDs of 7 residues changed 
    7388 ['1', '32'] 
    7389 
    7390 > select #2/FU
    7391 
    7392 251 atoms, 254 bonds, 32 residues, 1 model selected 
    7393 320 
    7394 321 
    7395 >1 
    7396 > renumber #2/FU start 321
    7397 
    7398 32 residues renumbered 
    7399 
    7400 > changechains #2/FU 4
    7401 
    7402 Chain IDs of 32 residues changed 
    7403 ['1', '1'] 
    7404 
    7405 > select #2/By
    7406 
    7407 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7408 352 
    7409 353 
    7410 >1 
    7411 > renumber #2/By start 353
    7412 
    7413 1 residues renumbered 
    7414 
    7415 > changechains #2/By 4
    7416 
    7417 Chain IDs of 1 residues changed 
    7418 ['1', '2'] 
    7419 
    7420 > select #2/AH
    7421 
    7422 13 atoms, 12 bonds, 2 residues, 1 model selected 
    7423 353 
    7424 354 
    7425 >1 
    7426 > renumber #2/AH start 354
    7427 
    7428 2 residues renumbered 
    7429 
    7430 > changechains #2/AH 4
    7431 
    7432 Chain IDs of 2 residues changed 
    7433 ['9', '18'] 
    7434 
    7435 > select #2/GV
    7436 
    7437 182 atoms, 182 bonds, 24 residues, 1 model selected 
    7438 355 
    7439 356 
    7440 >1 
    7441 > renumber #2/GV start 356
    7442 
    7443 24 residues renumbered 
    7444 
    7445 > changechains #2/GV 4
    7446 
    7447 Chain IDs of 24 residues changed 
    7448 ['1', '1'] 
    7449 
    7450 > select #2/Dq
    7451 
    7452 4 atoms, 3 bonds, 1 residue, 1 model selected 
    7453 379 
    7454 380 
    7455 >1 
    7456 > renumber #2/Dq start 380
    7457 
    7458 1 residues renumbered 
    7459 
    7460 > changechains #2/Dq 4
    7461 
    7462 Chain IDs of 1 residues changed 
    7463 ['1', '4'] 
    7464 
    7465 > select #2/GT
    7466 
    7467 28 atoms, 27 bonds, 4 residues, 1 model selected 
    7468 380 
    7469 381 
    7470 >1 
    7471 > renumber #2/GT start 381
    7472 
    7473 4 residues renumbered 
    7474 
    7475 > changechains #2/GT 4
    7476 
    7477 Chain IDs of 4 residues changed 
    7478 ['1', '2'] 
    7479 
    7480 > select #2/DS
    7481 
    7482 15 atoms, 15 bonds, 2 residues, 1 model selected 
    7483 384 
    7484 387 
    7485 >3 
    7486 > renumber #2/DS start 387
    7487 
    7488 2 residues renumbered 
    7489 
    7490 > changechains #2/DS 4
    7491 
    7492 Chain IDs of 2 residues changed 
    7493 ['1', '10'] 
    7494 
    7495 > select #2/Fp
    7496 
    7497 76 atoms, 78 bonds, 10 residues, 1 model selected 
    7498 388 
    7499 389 
    7500 >1 
    7501 > renumber #2/Fp start 389
    7502 
    7503 10 residues renumbered 
    7504 
    7505 > changechains #2/Fp 4
    7506 
    7507 Chain IDs of 10 residues changed 
    7508 ['1', '5'] 
    7509 
    7510 > select #2/7
    7511 
    7512 37 atoms, 37 bonds, 5 residues, 1 model selected 
    7513 398 
    7514 399 
    7515 >1 
    7516 > renumber #2/7 start 399
    7517 
    7518 5 residues renumbered 
    7519 
    7520 > changechains #2/7 4
    7521 
    7522 Chain IDs of 5 residues changed 
    7523 ['1', '2'] 
    7524 
    7525 > select #2/8
    7526 
    7527 16 atoms, 15 bonds, 2 residues, 1 model selected 
    7528 403 
    7529 404 
    7530 >1 
    7531 > renumber #2/8 start 404
    7532 
    7533 2 residues renumbered 
    7534 
    7535 > changechains #2/8 4
    7536 
    7537 Chain IDs of 2 residues changed 
    7538 ['1', '20'] 
    7539 
    7540 > select #2/FJ
    7541 
    7542 149 atoms, 150 bonds, 20 residues, 1 model selected 
    7543 405 
    7544 407 
    7545 >2 
    7546 > renumber #2/FJ start 407
    7547 
    7548 20 residues renumbered 
    7549 
    7550 > changechains #2/FJ 4
    7551 
    7552 Chain IDs of 20 residues changed 
    7553 ['1', '7'] 
    7554 
    7555 > select #2/Fu
    7556 
    7557 53 atoms, 53 bonds, 7 residues, 1 model selected 
    7558 426 
    7559 426 
    7560 >0 
    7561 
    7562 > delete #2/Fu:1
    7563 
    7564 > renumber #2/Fu start 427
    7565 
    7566 6 residues renumbered 
    7567 
    7568 > changechains #2/Fu 4
    7569 
    7570 Chain IDs of 6 residues changed 
    7571 ['1', '1'] 
    7572 
    7573 > select #2/D6
    7574 
    7575 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7576 432 
    7577 469 
    7578 >37 
    7579 > renumber #2/D6 start 469
    7580 
    7581 1 residues renumbered 
    7582 
    7583 > changechains #2/D6 4
    7584 
    7585 Chain IDs of 1 residues changed 
    7586 ['1', '2'] 
    7587 
    7588 > select #2/Dl
    7589 
    7590 8 atoms, 7 bonds, 2 residues, 1 model selected 
    7591 469 
    7592 470 
    7593 >1 
    7594 > renumber #2/Dl start 470
    7595 
    7596 2 residues renumbered 
    7597 
    7598 > changechains #2/Dl 4
    7599 
    7600 Chain IDs of 2 residues changed 
    7601 ['1', '1'] 
    7602 
    7603 > select #2/Dk
    7604 
    7605 Nothing selected 
    7606 471 
    7607 472 
    7608 >1 
    7609 > renumber #2/Dk start 472
    7610 
    7611 Traceback (most recent call last): 
    7612 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    7613 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    7614 line 188, in   
    7615 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    7616 File
    7617 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    7618 packages/chimerax/core/commands/run.py", line 49, in run 
    7619 results = command.run(text, log=log, return_json=return_json) 
    7620 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    7621 File
    7622 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    7623 packages/chimerax/core/commands/cli.py", line 3213, in run 
    7624 result = ci.function(session, **kw_args) 
    7625 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    7626 File
    7627 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    7628 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    7629 raise UserError("No residues specified") 
    7630 chimerax.core.errors.UserError: No residues specified 
    7631  
    7632 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    7633 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    7634 
    7635 > select #2/4
    7636 
    7637 2801 atoms, 2823 bonds, 365 residues, 1 model selected 
    7638 
    7639 > select #2/4:490
    7640 
    7641 Nothing selected 
    7642 
    7643 > select #2/4
    7644 
    7645 2801 atoms, 2823 bonds, 365 residues, 1 model selected 
    7646 
    7647 > select #2/4:490
    7648 
    7649 Nothing selected 
    7650 
    7651 > select #2/4:470
    7652 
    7653 4 atoms, 3 bonds, 1 residue, 1 model selected 
    7654 
    7655 > close session
    7656 
    7657 > open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    7658 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    7659 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/manualAnnotation.cxs"
    7660 
    7661 Opened cryosparc_P31_J245_map_sharp_Zflipped.mrc as #1.1.1.1, grid size
    7662 290,290,290, pixel 1.16, shown at level 0.337, step 1, values float32 
    7663 opened ChimeraX session 
    7664 
    7665 > color #1 gray
    7666 
    7667 > color
    7668 > #1/L,W,FJ,y,FR,Ee,6,F1,Ei,Eq,Ek,Q,Eg,E8,d,Fa,Es,GJ,EZ,F7,EV,FH,0,Ew,Ec,Fq,GV,EJ,FT,c,x,F6,FZ,FN,Fg,Em,Ea,1,Ep,E5,k,EO,FQ,o,FI,Er,m,Ej,v,Fx,ES,FM,FA,j,FY,q,Eb,s,Fh,Ev,Fd,Ez,El,Et,u,E2,n,FC,EQ,FW
    7669 > magenta
    7670 
    7671 > color
    7672 > #1/GC,Bd,Ca,AP,BN,FF,Fo,Cy,EY,FV,Ey,K,Gc,Ex,E6,Ai,U,GO,Z,Fc,2,E,Ff,BM,A,Ef,Bi,GM,4,D,CN,FG,GH,GW,Fj,E4,Er,ER,Fz,p,Dk,Bz,Br,F6,q,Aw,X,Y,9,c,Ge,Du,Ad,t,FU,By,AH,Dq,GT,DS,Fp,7,8,FJ,Fu,D6,Dl,Dk,Dt,C2,GR,FK,Gb,BA,B9,Ej,AC,k,Fn,o,AE,C8,Bo,Ep,GU,FE,Az,J,AK,Cj,h,i,Cw,As,r,l,BD,GA,a,En,Eo,GQ,B2,AB,FM,BG,A8,B0,C1,GN,FL,FP
    7673 > green
    7674 
    7675 > ui tool show "Volume Viewer"
    7676 
    7677 The cached device pixel ratio value was stale on window expose. Please file a
    7678 QTBUG which explains how to reproduce. 
    7679 
    7680 > volume #1.1.1.1 color #00fdff
    7681 
    7682 > transparency 50
    7683 
    7684 > select #1/4
    7685 
    7686 50 atoms, 51 bonds, 5 residues, 1 model selected 
    7687 
    7688 > show #14 models
    7689 
    7690 > hide #14 models
    7691 
    7692 > show #14 models
    7693 
    7694 > hide #14 models
    7695 
    7696 > show #14 models
    7697 
    7698 > hide #14 models
    7699 
    7700 > show #6 models
    7701 
    7702 > hide #6 models
    7703 
    7704 > show #5 models
    7705 
    7706 > hide #5 models
    7707 
    7708 > show #4 models
    7709 
    7710 > show #3 models
    7711 
    7712 > hide #4 models
    7713 
    7714 > hide #3 models
    7715 
    7716 > show #6 models
    7717 
    7718 > hide #6 models
    7719 
    7720 > show #7 models
    7721 
    7722 > hide #7 models
    7723 
    7724 > show #7 models
    7725 
    7726 > select #7
    7727 
    7728 4057 atoms, 4149 bonds, 527 residues, 1 model selected 
    7729 
    7730 > select #7/468
    7731 
    7732 Nothing selected 
    7733 
    7734 > view #7/468
    7735 
    7736 No objects specified. 
    7737 
    7738 > view #7:468
    7739 
    7740 > show #14 models
    7741 
    7742 > close #14
    7743 
    7744 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    7745 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    7746 > #1 alignmentsMod1Mod.txt
    7747 
    7748 ['1', '8'] 
    7749 ['1', '8'] 
    7750 ['11'] 
    7751 ['1', '1'] 
    7752 ['11'] 
    7753 ['1', '1'] 
    7754 ['1', '3'] 
    7755 ['1', '3'] 
    7756 ['11'] 
    7757 ['1', '1'] 
    7758 ['1', '4'] 
    7759 ['1', '4'] 
    7760 ['1', '15'] 
    7761 ['1', '15'] 
    7762 ['11'] 
    7763 ['1', '1'] 
    7764 ['1', '9'] 
    7765 ['1', '9'] 
    7766 ['1', '4'] 
    7767 ['1', '4'] 
    7768 ['1', '28'] 
    7769 ['1', '28'] 
    7770 ['1', '15'] 
    7771 ['1', '15'] 
    7772 ['7', '15'] 
    7773 ['7', '15'] 
    7774 ['2', '44'] 
    7775 ['2', '44'] 
    7776 ['1', '7'] 
    7777 ['1', '7'] 
    7778 ['1', '8'] 
    7779 ['1', '8'] 
    7780 ['1', '13'] 
    7781 ['1', '13'] 
    7782 ['11'] 
    7783 ['1', '1'] 
    7784 ['1', '31'] 
    7785 ['1', '31'] 
    7786 ['12'] 
    7787 ['1', '2'] 
    7788 ['6', '22'] 
    7789 ['6', '22'] 
    7790 ['5', '21'] 
    7791 ['5', '21'] 
    7792 ['3', '140'] 
    7793 ['3', '140'] 
    7794 ['1', '3'] 
    7795 ['1', '3'] 
    7796 ['1', '8'] 
    7797 ['1', '8'] 
    7798 ['2', '18'] 
    7799 ['2', '18'] 
    7800 ['1', '7'] 
    7801 ['1', '7'] 
    7802 ['7', '12'] 
    7803 ['7', '12'] 
    7804 ['1', '10'] 
    7805 ['1', '10'] 
    7806 ['12'] 
    7807 ['1', '2'] 
    7808 ['1', '10'] 
    7809 ['1', '10'] 
    7810 ['4', '63'] 
    7811 ['4', '63'] 
    7812 ['9', '11'] 
    7813 ['9', '11'] 
    7814 ['11'] 
    7815 ['1', '1'] 
    7816 ['1', '5'] 
    7817 ['1', '5'] 
    7818 ['5', '33'] 
    7819 ['5', '33'] 
    7820 ['1', '4'] 
    7821 ['1', '4'] 
    7822 ['1', '74'] 
    7823 ['1', '74'] 
    7824 ['3', '18'] 
    7825 ['3', '18'] 
    7826 ['2', '22'] 
    7827 ['2', '22'] 
    7828 ['1', '4'] 
    7829 ['1', '4'] 
    7830 ['1', '3'] 
    7831 ['1', '3'] 
    7832 ['2', '81'] 
    7833 ['2', '81'] 
    7834 ['1', '8'] 
    7835 ['1', '8'] 
    7836 ['1', '5'] 
    7837 ['1', '5'] 
    7838 ['14', '47'] 
    7839 ['14', '47'] 
    7840 ['1', '5'] 
    7841 ['1', '5'] 
    7842 ['1', '3'] 
    7843 ['1', '3'] 
    7844 ['11'] 
    7845 ['1', '1'] 
    7846 ['1', '7'] 
    7847 ['1', '7'] 
    7848 ['1', '14'] 
    7849 ['1', '14'] 
    7850 ['1', '5'] 
    7851 ['1', '5'] 
    7852 ['1', '4'] 
    7853 ['1', '4'] 
    7854 ['1', '7'] 
    7855 ['1', '7'] 
    7856 ['1', '14'] 
    7857 ['1', '14'] 
    7858 ['1', '25'] 
    7859 ['1', '25'] 
    7860 ['1', '20'] 
    7861 ['1', '20'] 
    7862 ['1', '8'] 
    7863 ['1', '8'] 
    7864 ['11'] 
    7865 ['1', '1'] 
    7866 ['12'] 
    7867 ['1', '2'] 
    7868 ['12'] 
    7869 ['1', '2'] 
    7870 ['1', '18'] 
    7871 ['1', '18'] 
    7872 ['1', '70'] 
    7873 ['1', '70'] 
    7874 ['12'] 
    7875 ['1', '2'] 
    7876 ['12'] 
    7877 ['1', '2'] 
    7878 ['1', '12'] 
    7879 ['1', '12'] 
    7880 ['1', '5'] 
    7881 ['1', '5'] 
    7882 ['1', '14'] 
    7883 ['1', '14'] 
    7884 ['1', '3'] 
    7885 ['1', '3'] 
    7886 ['12'] 
    7887 ['1', '2'] 
    7888 ['1', '3'] 
    7889 ['1', '3'] 
    7890 ['1', '7'] 
    7891 ['1', '7'] 
    7892 ['1', '32'] 
    7893 ['1', '32'] 
    7894 ['11'] 
    7895 ['1', '1'] 
    7896 ['12'] 
    7897 ['1', '2'] 
    7898 ['9', '18'] 
    7899 ['9', '18'] 
    7900 ['11'] 
    7901 ['1', '1'] 
    7902 ['1', '4'] 
    7903 ['1', '4'] 
    7904 ['12'] 
    7905 ['1', '2'] 
    7906 ['1', '10'] 
    7907 ['1', '10'] 
    7908 ['1', '5'] 
    7909 ['1', '5'] 
    7910 ['12'] 
    7911 ['1', '2'] 
    7912 ['1', '20'] 
    7913 ['1', '20'] 
    7914 ['1', '7'] 
    7915 ['1', '7'] 
    7916 ['11'] 
    7917 ['1', '1'] 
    7918 ['12'] 
    7919 ['1', '2'] 
    7920 ['11'] 
    7921 ['1', '1'] 
    7922 ['11'] 
    7923 ['1', '1'] 
    7924 ['12'] 
    7925 ['1', '2'] 
    7926 ['1', '3'] 
    7927 ['1', '3'] 
    7928 ['11', '32'] 
    7929 ['11', '32'] 
    7930 ['1', '12'] 
    7931 ['1', '12'] 
    7932 ['1', '3'] 
    7933 ['1', '3'] 
    7934 ['2', '15'] 
    7935 ['2', '15'] 
    7936 ['11'] 
    7937 ['1', '1'] 
    7938 ['11'] 
    7939 ['1', '1'] 
    7940 ['1', '153'] 
    7941 ['1', '153'] 
    7942 ['11'] 
    7943 ['1', '1'] 
    7944 ['1', '39'] 
    7945 ['1', '39'] 
    7946 ['1', '27'] 
    7947 ['1', '27'] 
    7948 ['1', '37'] 
    7949 ['1', '37'] 
    7950 ['12'] 
    7951 ['1', '2'] 
    7952 ['11'] 
    7953 ['1', '1'] 
    7954 ['11'] 
    7955 ['1', '1'] 
    7956 ['1', '56'] 
    7957 ['1', '56'] 
    7958 ['1', '9'] 
    7959 ['1', '9'] 
    7960 ['1', '4'] 
    7961 ['1', '4'] 
    7962 ['12'] 
    7963 ['1', '2'] 
    7964 ['1', '3'] 
    7965 ['1', '3'] 
    7966 ['12'] 
    7967 ['1', '2'] 
    7968 ['11'] 
    7969 ['1', '1'] 
    7970 ['1', '10'] 
    7971 ['1', '10'] 
    7972 ['1', '4'] 
    7973 ['1', '4'] 
    7974 ['11'] 
    7975 ['1', '1'] 
    7976 ['12'] 
    7977 ['1', '2'] 
    7978 ['1', '30'] 
    7979 ['1', '30'] 
    7980 ['3', '45'] 
    7981 ['3', '45'] 
    7982 ['1', '9'] 
    7983 ['1', '9'] 
    7984 ['2', '4'] 
    7985 ['2', '4'] 
    7986 ['12'] 
    7987 ['1', '2'] 
    7988 ['1', '59'] 
    7989 ['1', '59'] 
    7990 ['1', '13'] 
    7991 ['1', '13'] 
    7992 ['1', '34'] 
    7993 ['1', '34'] 
    7994 ['1', '5'] 
    7995 ['1', '5'] 
    7996 ['3', '25'] 
    7997 ['3', '25'] 
    7998 ['1', '4'] 
    7999 ['1', '4'] 
    8000 ['1', '3'] 
    8001 ['1', '3'] 
    8002 ['6', '20'] 
    8003 ['6', '20'] 
    8004 ['1', '11'] 
    8005 ['1', '11'] 
    8006 ['3', '39'] 
    8007 ['3', '39'] 
    8008 ['1', '27'] 
    8009 ['1', '27'] 
    8010 ['1', '21'] 
    8011 ['1', '21'] 
    8012 ['11'] 
    8013 ['1', '1'] 
    8014 ['1', '4'] 
    8015 ['1', '4'] 
    8016 ['2', '33'] 
    8017 ['2', '33'] 
    8018 ['11'] 
    8019 ['1', '1'] 
    8020 ['11'] 
    8021 ['1', '1'] 
    8022 ['12'] 
    8023 ['1', '2'] 
    8024 ['11'] 
    8025 ['1', '1'] 
    8026 ['11'] 
    8027 ['1', '1'] 
    8028 ['1', '8'] 
    8029 ['1', '8'] 
    8030 LtaP35.1590.mRNA_A 
    8031 LtaP35.1450.mRNA_A 
    8032 LtaP07.0060.mRNA_A 
    8033 LtaP32.3800.mRNA_A 
    8034 LtaP13.0770.mRNA_A 
    8035 sp|P14548.2|CYB_LEITA_A 
    8036 LtaP35.0210.mRNA_A 
    8037 GET91263.1_A 
    8038 LtaP35.0250.mRNA_A 
    8039 GET89654.1_A 
    8040 
    8041 > combine #1 close false name renamedAndRenumberedModel
    8042 
    8043 Renumering chain LtaP35.1590.mRNA_A 
    8044 ['1', '8'] 
    8045 
    8046 > select #14/GC
    8047 
    8048 66 atoms, 66 bonds, 8 residues, 1 model selected 
    8049 0 
    8050 17 
    8051 >17 
    8052 > renumber #14/GC start 17
    8053 
    8054 8 residues renumbered 
    8055 ['1', '1'] 
    8056 
    8057 > select #14/Bd
    8058 
    8059 4 atoms, 3 bonds, 1 residue, 1 model selected 
    8060 24 
    8061 25 
    8062 >1 
    8063 > renumber #14/Bd start 25
    8064 
    8065 1 residues renumbered 
    8066 
    8067 > changechains #14/Bd GC
    8068 
    8069 Chain IDs of 1 residues changed 
    8070 ['1', '1'] 
    8071 
    8072 > select #14/Ca
    8073 
    8074 4 atoms, 3 bonds, 1 residue, 1 model selected 
    8075 25 
    8076 26 
    8077 >1 
    8078 > renumber #14/Ca start 26
    8079 
    8080 1 residues renumbered 
    8081 
    8082 > changechains #14/Ca GC
    8083 
    8084 Chain IDs of 1 residues changed 
    8085 ['1', '3'] 
    8086 
    8087 > select #14/AP
    8088 
    8089 19 atoms, 19 bonds, 3 residues, 1 model selected 
    8090 26 
    8091 27 
    8092 >1 
    8093 > renumber #14/AP start 27
    8094 
    8095 3 residues renumbered 
    8096 
    8097 > changechains #14/AP GC
    8098 
    8099 Chain IDs of 3 residues changed 
    8100 ['1', '1'] 
    8101 
    8102 > select #14/BN
    8103 
    8104 6 atoms, 5 bonds, 1 residue, 1 model selected 
    8105 29 
    8106 30 
    8107 >1 
    8108 > renumber #14/BN start 30
    8109 
    8110 1 residues renumbered 
    8111 
    8112 > changechains #14/BN GC
    8113 
    8114 Chain IDs of 1 residues changed 
    8115 ['1', '4'] 
    8116 
    8117 > select #14/FF
    8118 
    8119 32 atoms, 32 bonds, 4 residues, 1 model selected 
    8120 30 
    8121 31 
    8122 >1 
    8123 > renumber #14/FF start 31
    8124 
    8125 4 residues renumbered 
    8126 
    8127 > changechains #14/FF GC
    8128 
    8129 Chain IDs of 4 residues changed 
    8130 ['1', '15'] 
    8131 
    8132 > select #14/Fo
    8133 
    8134 103 atoms, 106 bonds, 15 residues, 1 model selected 
    8135 34 
    8136 35 
    8137 >1 
    8138 > renumber #14/Fo start 35
    8139 
    8140 0 residues renumbered 
    8141 
    8142 > changechains #14/Fo GC
    8143 
    8144 Chain IDs of 15 residues changed 
    8145 ['1', '1'] 
    8146 
    8147 > select #14/Cy
    8148 
    8149 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8150 49 
    8151 50 
    8152 >1 
    8153 > renumber #14/Cy start 50
    8154 
    8155 1 residues renumbered 
    8156 
    8157 > changechains #14/Cy GC
    8158 
    8159 Chain IDs of 1 residues changed 
    8160 ['1', '9'] 
    8161 
    8162 > select #14/EY
    8163 
    8164 66 atoms, 67 bonds, 9 residues, 1 model selected 
    8165 50 
    8166 51 
    8167 >1 
    8168 > renumber #14/EY start 51
    8169 
    8170 0 residues renumbered 
    8171 
    8172 > changechains #14/EY GC
    8173 
    8174 Chain IDs of 9 residues changed 
    8175 ['1', '4'] 
    8176 
    8177 > select #14/FV
    8178 
    8179 24 atoms, 23 bonds, 4 residues, 1 model selected 
    8180 59 
    8181 60 
    8182 >1 
    8183 > renumber #14/FV start 60
    8184 
    8185 4 residues renumbered 
    8186 
    8187 > changechains #14/FV GC
    8188 
    8189 Chain IDs of 4 residues changed 
    8190 ['1', '28'] 
    8191 
    8192 > select #14/Ey
    8193 
    8194 210 atoms, 213 bonds, 28 residues, 1 model selected 
    8195 63 
    8196 64 
    8197 >1 
    8198 > renumber #14/Ey start 64
    8199 
    8200 0 residues renumbered 
    8201 
    8202 > changechains #14/Ey GC
    8203 
    8204 Chain IDs of 28 residues changed 
    8205 ['1', '15'] 
    8206 
    8207 > select #14/K
    8208 
    8209 102 atoms, 102 bonds, 15 residues, 1 model selected 
    8210 91 
    8211 92 
    8212 >1 
    8213 > renumber #14/K start 92
    8214 
    8215 0 residues renumbered 
    8216 
    8217 > changechains #14/K GC
    8218 
    8219 Chain IDs of 15 residues changed 
    8220 ['7', '15'] 
    8221 
    8222 > select #14/L
    8223 
    8224 184 atoms, 187 bonds, 22 residues, 1 model selected 
    8225 106 
    8226 107 
    8227 >1 
    8228 > renumber #14/L start 107
    8229 
    8230 0 residues renumbered 
    8231 
    8232 > changechains #14/L GC
    8233 
    8234 Chain IDs of 22 residues changed 
    8235 ['2', '44'] 
    8236 
    8237 > select #14/Ee
    8238 
    8239 355 atoms, 363 bonds, 44 residues, 1 model selected 
    8240 128 
    8241 129 
    8242 >1 
    8243 > renumber #14/Ee start 129
    8244 
    8245 0 residues renumbered 
    8246 
    8247 > changechains #14/Ee GC
    8248 
    8249 Chain IDs of 44 residues changed 
    8250 Renumering chain LtaP35.1450.mRNA_A 
    8251 ['1', '7'] 
    8252 
    8253 > select #14/Gc
    8254 
    8255 52 atoms, 52 bonds, 7 residues, 1 model selected 
    8256 0 
    8257 2 
    8258 >2 
    8259 > renumber #14/Gc start 2
    8260 
    8261 7 residues renumbered 
    8262 ['1', '8'] 
    8263 
    8264 > select #14/Ex
    8265 
    8266 55 atoms, 56 bonds, 8 residues, 1 model selected 
    8267 8 
    8268 10 
    8269 >2 
    8270 > renumber #14/Ex start 10
    8271 
    8272 8 residues renumbered 
    8273 
    8274 > changechains #14/Ex Gc
    8275 
    8276 Chain IDs of 8 residues changed 
    8277 ['1', '13'] 
    8278 
    8279 > select #14/E6
    8280 
    8281 98 atoms, 100 bonds, 13 residues, 1 model selected 
    8282 17 
    8283 18 
    8284 >1 
    8285 > renumber #14/E6 start 18
    8286 
    8287 13 residues renumbered 
    8288 
    8289 > changechains #14/E6 Gc
    8290 
    8291 Chain IDs of 13 residues changed 
    8292 ['1', '1'] 
    8293 
    8294 > select #14/Ai
    8295 
    8296 11 atoms, 10 bonds, 1 residue, 1 model selected 
    8297 30 
    8298 31 
    8299 >1 
    8300 > renumber #14/Ai start 31
    8301 
    8302 1 residues renumbered 
    8303 
    8304 > changechains #14/Ai Gc
    8305 
    8306 Chain IDs of 1 residues changed 
    8307 ['1', '31'] 
    8308 
    8309 > select #14/0
    8310 
    8311 233 atoms, 235 bonds, 31 residues, 1 model selected 
    8312 31 
    8313 32 
    8314 >1 
    8315 > renumber #14/0 start 32
    8316 
    8317 0 residues renumbered 
    8318 
    8319 > changechains #14/0 Gc
    8320 
    8321 Chain IDs of 31 residues changed 
    8322 ['1', '2'] 
    8323 
    8324 > select #14/U
    8325 
    8326 11 atoms, 10 bonds, 2 residues, 1 model selected 
    8327 62 
    8328 63 
    8329 >1 
    8330 > renumber #14/U start 63
    8331 
    8332 2 residues renumbered 
    8333 
    8334 > changechains #14/U Gc
    8335 
    8336 Chain IDs of 2 residues changed 
    8337 ['6', '22'] 
    8338 
    8339 > select #14/d
    8340 
    8341 176 atoms, 182 bonds, 22 residues, 1 model selected 
    8342 64 
    8343 65 
    8344 >1 
    8345 > renumber #14/d start 65
    8346 
    8347 0 residues renumbered 
    8348 
    8349 > changechains #14/d Gc
    8350 
    8351 Chain IDs of 22 residues changed 
    8352 ['5', '21'] 
    8353 
    8354 > select #14/EV
    8355 
    8356 161 atoms, 160 bonds, 21 residues, 1 model selected 
    8357 86 
    8358 87 
    8359 >1 
    8360 > renumber #14/EV start 87
    8361 
    8362 0 residues renumbered 
    8363 
    8364 > changechains #14/EV Gc
    8365 
    8366 Chain IDs of 21 residues changed 
    8367 
    8368 > delete #14/Ew:132
    8369 
    8370 > renumber #14/Ew:133-9999999 start 132
    8371 
    8372 118 residues renumbered 
    8373 ['3', '139'] 
    8374 
    8375 > select #14/Ew
    8376 
    8377 1064 atoms, 1076 bonds, 1 pseudobond, 142 residues, 2 models selected 
    8378 107 
    8379 108 
    8380 >1 
    8381 > renumber #14/Ew start 108
    8382 
    8383 0 residues renumbered 
    8384 
    8385 > changechains #14/Ew Gc
    8386 
    8387 Chain IDs of 142 residues changed 
    8388 ['1', '3'] 
    8389 
    8390 > select #14/GO
    8391 
    8392 18 atoms, 18 bonds, 3 residues, 1 model selected 
    8393 249 
    8394 250 
    8395 >1 
    8396 > renumber #14/GO start 250
    8397 
    8398 3 residues renumbered 
    8399 
    8400 > changechains #14/GO Gc
    8401 
    8402 Chain IDs of 3 residues changed 
    8403 ['1', '8'] 
    8404 
    8405 > select #14/Z
    8406 
    8407 69 atoms, 71 bonds, 8 residues, 1 model selected 
    8408 252 
    8409 253 
    8410 >1 
    8411 > renumber #14/Z start 253
    8412 
    8413 8 residues renumbered 
    8414 
    8415 > changechains #14/Z Gc
    8416 
    8417 Chain IDs of 8 residues changed 
    8418 ['2', '18'] 
    8419 
    8420 > select #14/ES
    8421 
    8422 163 atoms, 164 bonds, 18 residues, 1 model selected 
    8423 260 
    8424 262 
    8425 >2 
    8426 > renumber #14/ES start 262
    8427 
    8428 0 residues renumbered 
    8429 
    8430 > changechains #14/ES Gc
    8431 
    8432 Chain IDs of 18 residues changed 
    8433 ['1', '7'] 
    8434 
    8435 > select #14/Fc
    8436 
    8437 40 atoms, 41 bonds, 7 residues, 1 model selected 
    8438 279 
    8439 282 
    8440 >3 
    8441 > renumber #14/Fc start 282
    8442 
    8443 0 residues renumbered 
    8444 
    8445 > changechains #14/Fc Gc
    8446 
    8447 Chain IDs of 7 residues changed 
    8448 ['7', '12'] 
    8449 
    8450 > select #14/Fa
    8451 
    8452 177 atoms, 179 bonds, 24 residues, 1 model selected 
    8453 288 
    8454 289 
    8455 >1 
    8456 > renumber #14/Fa start 289
    8457 
    8458 0 residues renumbered 
    8459 
    8460 > changechains #14/Fa Gc
    8461 
    8462 Chain IDs of 24 residues changed 
    8463 ['1', '10'] 
    8464 
    8465 > select #14/2
    8466 
    8467 81 atoms, 83 bonds, 10 residues, 1 model selected 
    8468 312 
    8469 314 
    8470 >2 
    8471 > renumber #14/2 start 314
    8472 
    8473 10 residues renumbered 
    8474 
    8475 > changechains #14/2 Gc
    8476 
    8477 Chain IDs of 10 residues changed 
    8478 ['1', '2'] 
    8479 
    8480 > select #14/E
    8481 
    8482 16 atoms, 16 bonds, 2 residues, 1 model selected 
    8483 323 
    8484 326 
    8485 >3 
    8486 > renumber #14/E start 326
    8487 
    8488 2 residues renumbered 
    8489 
    8490 > changechains #14/E Gc
    8491 
    8492 Chain IDs of 2 residues changed 
    8493 ['1', '10'] 
    8494 
    8495 > select #14/Ff
    8496 
    8497 75 atoms, 76 bonds, 10 residues, 1 model selected 
    8498 327 
    8499 328 
    8500 >1 
    8501 > renumber #14/Ff start 328
    8502 
    8503 0 residues renumbered 
    8504 
    8505 > changechains #14/Ff Gc
    8506 
    8507 Chain IDs of 10 residues changed 
    8508 ['4', '63'] 
    8509 
    8510 > select #14/E2
    8511 
    8512 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    8513 337 
    8514 338 
    8515 >1 
    8516 > renumber #14/E2 start 338
    8517 
    8518 0 residues renumbered 
    8519 
    8520 > changechains #14/E2 Gc
    8521 
    8522 Chain IDs of 132 residues changed 
    8523 ['9', '11'] 
    8524 
    8525 > select #14/W
    8526 
    8527 182 atoms, 189 bonds, 20 residues, 1 model selected 
    8528 469 
    8529 470 
    8530 >1 
    8531 > renumber #14/W start 470
    8532 
    8533 0 residues renumbered 
    8534 
    8535 > changechains #14/W Gc
    8536 
    8537 Chain IDs of 20 residues changed 
    8538 ['1', '1'] 
    8539 
    8540 > select #14/BM
    8541 
    8542 7 atoms, 6 bonds, 1 residue, 1 model selected 
    8543 489 
    8544 490 
    8545 >1 
    8546 > renumber #14/BM start 490
    8547 
    8548 1 residues renumbered 
    8549 
    8550 > changechains #14/BM Gc
    8551 
    8552 Chain IDs of 1 residues changed 
    8553 Renumering chain LtaP07.0060.mRNA_A 
    8554 ['1', '5'] 
    8555 
    8556 > select #14/A
    8557 
    8558 32 atoms, 33 bonds, 5 residues, 1 model selected 
    8559 0 
    8560 5 
    8561 >5 
    8562 > renumber #14/A start 5
    8563 
    8564 5 residues renumbered 
    8565 ['5', '33'] 
    8566 
    8567 > select #14/Fd
    8568 
    8569 314 atoms, 324 bonds, 36 residues, 1 model selected 
    8570 9 
    8571 10 
    8572 >1 
    8573 > renumber #14/Fd start 10
    8574 
    8575 0 residues renumbered 
    8576 
    8577 > changechains #14/Fd A
    8578 
    8579 Chain IDs of 36 residues changed 
    8580 ['1', '4'] 
    8581 
    8582 > select #14/Ef
    8583 
    8584 24 atoms, 23 bonds, 4 residues, 1 model selected 
    8585 45 
    8586 46 
    8587 >1 
    8588 > renumber #14/Ef start 46
    8589 
    8590 4 residues renumbered 
    8591 
    8592 > changechains #14/Ef A
    8593 
    8594 Chain IDs of 4 residues changed 
    8595 ['1', '74'] 
    8596 
    8597 > select #14/Eg
    8598 
    8599 577 atoms, 589 bonds, 74 residues, 1 model selected 
    8600 49 
    8601 50 
    8602 >1 
    8603 > renumber #14/Eg start 50
    8604 
    8605 0 residues renumbered 
    8606 
    8607 > changechains #14/Eg A
    8608 
    8609 Chain IDs of 74 residues changed 
    8610 ['3', '18'] 
    8611 
    8612 > select #14/j
    8613 
    8614 160 atoms, 162 bonds, 22 residues, 1 model selected 
    8615 123 
    8616 124 
    8617 >1 
    8618 > renumber #14/j start 124
    8619 
    8620 0 residues renumbered 
    8621 
    8622 > changechains #14/j A
    8623 
    8624 Chain IDs of 22 residues changed 
    8625 
    8626 > renumber #14/Ei:7-9999999 start 8
    8627 
    8628 25 residues renumbered 
    8629 
    8630 > ~bond #14/Ei:6@C #14/Ei:8@N
    8631 
    8632 ['2', '21'] 
    8633 
    8634 > select #14/Ei
    8635 
    8636 187 atoms, 196 bonds, 25 residues, 1 model selected 
    8637 145 
    8638 145 
    8639 >0 
    8640 
    8641 > delete #14/Ei:1
    8642 
    8643 > renumber #14/Ei start 146
    8644 
    8645 25 residues renumbered 
    8646 
    8647 > changechains #14/Ei A
    8648 
    8649 Chain IDs of 25 residues changed 
    8650 ['1', '4'] 
    8651 
    8652 > select #14/Bi
    8653 
    8654 23 atoms, 22 bonds, 4 residues, 1 model selected 
    8655 170 
    8656 168 
    8657 >-2 
    8658 
    8659 > delete #14/Bi:3
    8660 
    8661 > delete #14/Bi:2
    8662 
    8663 > delete #14/Bi:1
    8664 
    8665 > renumber #14/Bi start 171
    8666 
    8667 1 residues renumbered 
    8668 
    8669 > changechains #14/Bi A
    8670 
    8671 Chain IDs of 1 residues changed 
    8672 ['1', '3'] 
    8673 
    8674 > select #14/GM
    8675 
    8676 21 atoms, 20 bonds, 3 residues, 1 model selected 
    8677 171 
    8678 171 
    8679 >0 
    8680 
    8681 > delete #14/GM:1
    8682 
    8683 > renumber #14/GM start 172
    8684 
    8685 2 residues renumbered 
    8686 
    8687 > changechains #14/GM A
    8688 
    8689 Chain IDs of 2 residues changed 
    8690 ['2', '81'] 
    8691 
    8692 > select #14/E8
    8693 
    8694 695 atoms, 717 bonds, 86 residues, 1 model selected 
    8695 173 
    8696 174 
    8697 >1 
    8698 > renumber #14/E8 start 174
    8699 
    8700 0 residues renumbered 
    8701 
    8702 > changechains #14/E8 A
    8703 
    8704 Chain IDs of 86 residues changed 
    8705 Renumering chain LtaP32.3800.mRNA_A 
    8706 ['1', '8'] 
    8707 
    8708 > select #14/N
    8709 
    8710 66 atoms, 69 bonds, 8 residues, 1 model selected 
    8711 0 
    8712 34 
    8713 >34 
    8714 > renumber #14/N start 34
    8715 
    8716 0 residues renumbered 
    8717 ['1', '5'] 
    8718 
    8719 > select #14/GZ
    8720 
    8721 35 atoms, 34 bonds, 5 residues, 1 model selected 
    8722 41 
    8723 42 
    8724 >1 
    8725 > renumber #14/GZ start 42
    8726 
    8727 5 residues renumbered 
    8728 
    8729 > changechains #14/GZ N
    8730 
    8731 Chain IDs of 5 residues changed 
    8732 ['14', '47'] 
    8733 
    8734 > select #14/FT
    8735 
    8736 810 atoms, 833 bonds, 101 residues, 1 model selected 
    8737 46 
    8738 47 
    8739 >1 
    8740 > renumber #14/FT start 47
    8741 
    8742 0 residues renumbered 
    8743 
    8744 > changechains #14/FT N
    8745 
    8746 Chain IDs of 101 residues changed 
    8747 Renumering chain LtaP13.0770.mRNA_A 
    8748 ['1', '5'] 
    8749 
    8750 > select #14/4
    8751 
    8752 50 atoms, 51 bonds, 5 residues, 1 model selected 
    8753 0 
    8754 25 
    8755 >25 
    8756 > renumber #14/4 start 25
    8757 
    8758 5 residues renumbered 
    8759 ['1', '3'] 
    8760 
    8761 > select #14/D
    8762 
    8763 20 atoms, 20 bonds, 3 residues, 1 model selected 
    8764 29 
    8765 30 
    8766 >1 
    8767 > renumber #14/D start 30
    8768 
    8769 3 residues renumbered 
    8770 
    8771 > changechains #14/D 4
    8772 
    8773 Chain IDs of 3 residues changed 
    8774 ['1', '1'] 
    8775 
    8776 > select #14/CN
    8777 
    8778 6 atoms, 5 bonds, 1 residue, 1 model selected 
    8779 32 
    8780 33 
    8781 >1 
    8782 > renumber #14/CN start 33
    8783 
    8784 1 residues renumbered 
    8785 
    8786 > changechains #14/CN 4
    8787 
    8788 Chain IDs of 1 residues changed 
    8789 ['1', '7'] 
    8790 
    8791 > select #14/FG
    8792 
    8793 48 atoms, 48 bonds, 7 residues, 1 model selected 
    8794 33 
    8795 34 
    8796 >1 
    8797 > renumber #14/FG start 34
    8798 
    8799 7 residues renumbered 
    8800 
    8801 > changechains #14/FG 4
    8802 
    8803 Chain IDs of 7 residues changed 
    8804 ['1', '14'] 
    8805 
    8806 > select #14/GH
    8807 
    8808 92 atoms, 92 bonds, 14 residues, 1 model selected 
    8809 40 
    8810 57 
    8811 >17 
    8812 > renumber #14/GH start 57
    8813 
    8814 0 residues renumbered 
    8815 
    8816 > changechains #14/GH 4
    8817 
    8818 Chain IDs of 14 residues changed 
    8819 ['1', '5'] 
    8820 
    8821 > select #14/GW
    8822 
    8823 46 atoms, 46 bonds, 5 residues, 1 model selected 
    8824 70 
    8825 71 
    8826 >1 
    8827 > renumber #14/GW start 71
    8828 
    8829 5 residues renumbered 
    8830 
    8831 > changechains #14/GW 4
    8832 
    8833 Chain IDs of 5 residues changed 
    8834 ['1', '4'] 
    8835 
    8836 > select #14/Fj
    8837 
    8838 24 atoms, 23 bonds, 4 residues, 1 model selected 
    8839 75 
    8840 76 
    8841 >1 
    8842 > renumber #14/Fj start 76
    8843 
    8844 4 residues renumbered 
    8845 
    8846 > changechains #14/Fj 4
    8847 
    8848 Chain IDs of 4 residues changed 
    8849 ['1', '7'] 
    8850 
    8851 > select #14/E4
    8852 
    8853 48 atoms, 48 bonds, 7 residues, 1 model selected 
    8854 79 
    8855 80 
    8856 >1 
    8857 > renumber #14/E4 start 80
    8858 
    8859 7 residues renumbered 
    8860 
    8861 > changechains #14/E4 4
    8862 
    8863 Chain IDs of 7 residues changed 
    8864 ['1', '14'] 
    8865 
    8866 > select #14/Er
    8867 
    8868 99 atoms, 102 bonds, 14 residues, 1 model selected 
    8869 86 
    8870 87 
    8871 >1 
    8872 > renumber #14/Er start 87
    8873 
    8874 0 residues renumbered 
    8875 
    8876 > changechains #14/Er 4
    8877 
    8878 Chain IDs of 14 residues changed 
    8879 ['1', '25'] 
    8880 
    8881 > select #14/ER
    8882 
    8883 208 atoms, 211 bonds, 25 residues, 1 model selected 
    8884 100 
    8885 101 
    8886 >1 
    8887 > renumber #14/ER start 101
    8888 
    8889 25 residues renumbered 
    8890 
    8891 > changechains #14/ER 4
    8892 
    8893 Chain IDs of 25 residues changed 
    8894 ['1', '20'] 
    8895 
    8896 > select #14/Fz
    8897 
    8898 146 atoms, 147 bonds, 20 residues, 1 model selected 
    8899 125 
    8900 124 
    8901 >-1 
    8902 
    8903 > delete #14/Fz:2
    8904 
    8905 > delete #14/Fz:1
    8906 
    8907 > renumber #14/Fz start 126
    8908 
    8909 20 residues renumbered 
    8910 
    8911 > changechains #14/Fz 4
    8912 
    8913 Chain IDs of 20 residues changed 
    8914 ['1', '8'] 
    8915 
    8916 > select #14/p
    8917 
    8918 62 atoms, 62 bonds, 8 residues, 1 model selected 
    8919 143 
    8920 144 
    8921 >1 
    8922 > renumber #14/p start 144
    8923 
    8924 8 residues renumbered 
    8925 
    8926 > changechains #14/p 4
    8927 
    8928 Traceback (most recent call last): 
    8929 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    8930 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    8931 line 190, in   
    8932 run(session, f'changechains {outModel}/{hC} {firstChain}') 
    8933 File
    8934 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    8935 packages/chimerax/core/commands/run.py", line 49, in run 
    8936 results = command.run(text, log=log, return_json=return_json) 
    8937 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    8938 File
    8939 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    8940 packages/chimerax/core/commands/cli.py", line 3213, in run 
    8941 result = ci.function(session, **kw_args) 
    8942 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    8943 File
    8944 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    8945 packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains 
    8946 raise UserError("Proposed chainID change conflicts with existing residue %s" %
    8947 r) 
    8948 chimerax.core.errors.UserError: Proposed chainID change conflicts with
    8949 existing residue renamedAndRenumberedModel #14/4 LEU 144 
    8950  
    8951 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    8952 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    8953 
    8954 > hide #1.3 models
    8955 
    8956 > hide #1.2 models
    8957 
    8958 > hide #!1.1 models
    8959 
    8960 > hide #!1 models
    8961 
    8962 > show #1.2 models
    8963 
    8964 > hide #!14 models
    8965 
    8966 > hide #1.2 models
    8967 
    8968 > show #!14 models
    8969 
    8970 > delete #14/FN:469
    8971 
    8972 > renumber #14/FN:470-503 start 479
    8973 
    8974 34 residues renumbered 
    8975 
    8976 > rename #14 teste
    8977 
    8978 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    8979 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    8980 > #14 alignmentsMod1Mod.txt
    8981 
    8982 ['1', '8'] 
    8983 ['1', '8'] 
    8984 ['11'] 
    8985 ['1', '1'] 
    8986 ['11'] 
    8987 ['1', '1'] 
    8988 ['1', '3'] 
    8989 ['1', '3'] 
    8990 ['11'] 
    8991 ['1', '1'] 
    8992 ['1', '4'] 
    8993 ['1', '4'] 
    8994 ['1', '15'] 
    8995 ['1', '15'] 
    8996 ['11'] 
    8997 ['1', '1'] 
    8998 ['1', '9'] 
    8999 ['1', '9'] 
    9000 ['1', '4'] 
    9001 ['1', '4'] 
    9002 ['1', '28'] 
    9003 ['1', '28'] 
    9004 ['1', '15'] 
    9005 ['1', '15'] 
    9006 ['7', '15'] 
    9007 ['7', '15'] 
    9008 ['2', '44'] 
    9009 ['2', '44'] 
    9010 ['1', '7'] 
    9011 ['1', '7'] 
    9012 ['1', '8'] 
    9013 ['1', '8'] 
    9014 ['1', '13'] 
    9015 ['1', '13'] 
    9016 ['11'] 
    9017 ['1', '1'] 
    9018 ['1', '31'] 
    9019 ['1', '31'] 
    9020 ['12'] 
    9021 ['1', '2'] 
    9022 ['6', '22'] 
    9023 ['6', '22'] 
    9024 ['5', '21'] 
    9025 ['5', '21'] 
    9026 ['3', '140'] 
    9027 ['3', '140'] 
    9028 ['1', '3'] 
    9029 ['1', '3'] 
    9030 ['1', '8'] 
    9031 ['1', '8'] 
    9032 ['2', '18'] 
    9033 ['2', '18'] 
    9034 ['1', '7'] 
    9035 ['1', '7'] 
    9036 ['7', '12'] 
    9037 ['7', '12'] 
    9038 ['1', '10'] 
    9039 ['1', '10'] 
    9040 ['12'] 
    9041 ['1', '2'] 
    9042 ['1', '10'] 
    9043 ['1', '10'] 
    9044 ['4', '63'] 
    9045 ['4', '63'] 
    9046 ['9', '11'] 
    9047 ['9', '11'] 
    9048 ['11'] 
    9049 ['1', '1'] 
    9050 ['1', '5'] 
    9051 ['1', '5'] 
    9052 ['5', '33'] 
    9053 ['5', '33'] 
    9054 ['1', '4'] 
    9055 ['1', '4'] 
    9056 ['1', '74'] 
    9057 ['1', '74'] 
    9058 ['3', '18'] 
    9059 ['3', '18'] 
    9060 ['2', '22'] 
    9061 ['2', '22'] 
    9062 ['1', '4'] 
    9063 ['1', '4'] 
    9064 ['1', '3'] 
    9065 ['1', '3'] 
    9066 ['2', '81'] 
    9067 ['2', '81'] 
    9068 ['1', '8'] 
    9069 ['1', '8'] 
    9070 ['1', '5'] 
    9071 ['1', '5'] 
    9072 ['14', '47'] 
    9073 ['14', '47'] 
    9074 ['1', '5'] 
    9075 ['1', '5'] 
    9076 ['1', '3'] 
    9077 ['1', '3'] 
    9078 ['11'] 
    9079 ['1', '1'] 
    9080 ['1', '7'] 
    9081 ['1', '7'] 
    9082 ['1', '14'] 
    9083 ['1', '14'] 
    9084 ['1', '5'] 
    9085 ['1', '5'] 
    9086 ['1', '4'] 
    9087 ['1', '4'] 
    9088 ['1', '7'] 
    9089 ['1', '7'] 
    9090 ['1', '14'] 
    9091 ['1', '14'] 
    9092 ['1', '25'] 
    9093 ['1', '25'] 
    9094 ['1', '20'] 
    9095 ['1', '20'] 
    9096 ['1', '8'] 
    9097 ['1', '8'] 
    9098 ['11'] 
    9099 ['1', '1'] 
    9100 ['12'] 
    9101 ['1', '2'] 
    9102 ['12'] 
    9103 ['1', '2'] 
    9104 ['1', '18'] 
    9105 ['1', '18'] 
    9106 ['1', '70'] 
    9107 ['1', '70'] 
    9108 ['12'] 
    9109 ['1', '2'] 
    9110 ['12'] 
    9111 ['1', '2'] 
    9112 ['1', '12'] 
    9113 ['1', '12'] 
    9114 ['1', '5'] 
    9115 ['1', '5'] 
    9116 ['1', '14'] 
    9117 ['1', '14'] 
    9118 ['1', '3'] 
    9119 ['1', '3'] 
    9120 ['12'] 
    9121 ['1', '2'] 
    9122 ['1', '3'] 
    9123 ['1', '3'] 
    9124 ['1', '7'] 
    9125 ['1', '7'] 
    9126 ['1', '32'] 
    9127 ['1', '32'] 
    9128 ['11'] 
    9129 ['1', '1'] 
    9130 ['12'] 
    9131 ['1', '2'] 
    9132 ['9', '18'] 
    9133 ['9', '18'] 
    9134 ['11'] 
    9135 ['1', '1'] 
    9136 ['1', '4'] 
    9137 ['1', '4'] 
    9138 ['12'] 
    9139 ['1', '2'] 
    9140 ['1', '10'] 
    9141 ['1', '10'] 
    9142 ['1', '5'] 
    9143 ['1', '5'] 
    9144 ['12'] 
    9145 ['1', '2'] 
    9146 ['1', '20'] 
    9147 ['1', '20'] 
    9148 ['1', '7'] 
    9149 ['1', '7'] 
    9150 ['11'] 
    9151 ['1', '1'] 
    9152 ['12'] 
    9153 ['1', '2'] 
    9154 ['11'] 
    9155 ['1', '1'] 
    9156 ['11'] 
    9157 ['1', '1'] 
    9158 ['12'] 
    9159 ['1', '2'] 
    9160 ['1', '3'] 
    9161 ['1', '3'] 
    9162 ['11', '32'] 
    9163 ['11', '32'] 
    9164 ['1', '12'] 
    9165 ['1', '12'] 
    9166 ['1', '3'] 
    9167 ['1', '3'] 
    9168 ['2', '15'] 
    9169 ['2', '15'] 
    9170 ['11'] 
    9171 ['1', '1'] 
    9172 ['11'] 
    9173 ['1', '1'] 
    9174 ['1', '153'] 
    9175 ['1', '153'] 
    9176 ['11'] 
    9177 ['1', '1'] 
    9178 ['1', '39'] 
    9179 ['1', '39'] 
    9180 ['1', '27'] 
    9181 ['1', '27'] 
    9182 ['1', '37'] 
    9183 ['1', '37'] 
    9184 ['12'] 
    9185 ['1', '2'] 
    9186 ['11'] 
    9187 ['1', '1'] 
    9188 ['11'] 
    9189 ['1', '1'] 
    9190 ['1', '56'] 
    9191 ['1', '56'] 
    9192 ['1', '9'] 
    9193 ['1', '9'] 
    9194 ['1', '4'] 
    9195 ['1', '4'] 
    9196 ['12'] 
    9197 ['1', '2'] 
    9198 ['1', '3'] 
    9199 ['1', '3'] 
    9200 ['12'] 
    9201 ['1', '2'] 
    9202 ['11'] 
    9203 ['1', '1'] 
    9204 ['1', '10'] 
    9205 ['1', '10'] 
    9206 ['1', '4'] 
    9207 ['1', '4'] 
    9208 ['11'] 
    9209 ['1', '1'] 
    9210 ['12'] 
    9211 ['1', '2'] 
    9212 ['1', '30'] 
    9213 ['1', '30'] 
    9214 ['3', '45'] 
    9215 ['3', '45'] 
    9216 ['1', '9'] 
    9217 ['1', '9'] 
    9218 ['2', '4'] 
    9219 ['2', '4'] 
    9220 ['12'] 
    9221 ['1', '2'] 
    9222 ['1', '59'] 
    9223 ['1', '59'] 
    9224 ['1', '13'] 
    9225 ['1', '13'] 
    9226 ['1', '34'] 
    9227 ['1', '34'] 
    9228 ['1', '5'] 
    9229 ['1', '5'] 
    9230 ['3', '25'] 
    9231 ['3', '25'] 
    9232 ['1', '4'] 
    9233 ['1', '4'] 
    9234 ['1', '3'] 
    9235 ['1', '3'] 
    9236 ['6', '20'] 
    9237 ['6', '20'] 
    9238 ['1', '11'] 
    9239 ['1', '11'] 
    9240 ['3', '39'] 
    9241 ['3', '39'] 
    9242 ['1', '27'] 
    9243 ['1', '27'] 
    9244 ['1', '21'] 
    9245 ['1', '21'] 
    9246 ['11'] 
    9247 ['1', '1'] 
    9248 ['1', '4'] 
    9249 ['1', '4'] 
    9250 ['2', '33'] 
    9251 ['2', '33'] 
    9252 ['11'] 
    9253 ['1', '1'] 
    9254 ['11'] 
    9255 ['1', '1'] 
    9256 ['12'] 
    9257 ['1', '2'] 
    9258 ['11'] 
    9259 ['1', '1'] 
    9260 ['11'] 
    9261 ['1', '1'] 
    9262 ['1', '8'] 
    9263 ['1', '8'] 
    9264 LtaP35.1590.mRNA_A 
    9265 LtaP35.1450.mRNA_A 
    9266 LtaP07.0060.mRNA_A 
    9267 LtaP32.3800.mRNA_A 
    9268 LtaP13.0770.mRNA_A 
    9269 sp|P14548.2|CYB_LEITA_A 
    9270 LtaP35.0210.mRNA_A 
    9271 GET91263.1_A 
    9272 LtaP35.0250.mRNA_A 
    9273 GET89654.1_A 
    9274 
    9275 > combine #14 close false name renamedAndRenumberedModel
    9276 
    9277 Renumering chain LtaP35.1590.mRNA_A 
    9278 ['1', '8'] 
    9279 
    9280 > select #15/GC
    9281 
    9282 1183 atoms, 1196 bonds, 156 residues, 1 model selected 
    9283 0 
    9284 17 
    9285 >17 
    9286 > renumber #15/GC start 17
    9287 
    9288 0 residues renumbered 
    9289 ['1', '1'] 
    9290 
    9291 > select #15/Bd
    9292 
    9293 Nothing selected 
    9294 172 
    9295 25 
    9296 >-147 
    9297 
    9298 > delete #15/Bd:148
    9299 
    9300 > delete #15/Bd:147
    9301 
    9302 > delete #15/Bd:146
    9303 
    9304 > delete #15/Bd:145
    9305 
    9306 > delete #15/Bd:144
    9307 
    9308 > delete #15/Bd:143
    9309 
    9310 > delete #15/Bd:142
    9311 
    9312 > delete #15/Bd:141
    9313 
    9314 > delete #15/Bd:140
    9315 
    9316 > delete #15/Bd:139
    9317 
    9318 > delete #15/Bd:138
    9319 
    9320 > delete #15/Bd:137
    9321 
    9322 > delete #15/Bd:136
    9323 
    9324 > delete #15/Bd:135
    9325 
    9326 > delete #15/Bd:134
    9327 
    9328 > delete #15/Bd:133
    9329 
    9330 > delete #15/Bd:132
    9331 
    9332 > delete #15/Bd:131
    9333 
    9334 > delete #15/Bd:130
    9335 
    9336 > delete #15/Bd:129
    9337 
    9338 > delete #15/Bd:128
    9339 
    9340 > delete #15/Bd:127
    9341 
    9342 > delete #15/Bd:126
    9343 
    9344 > delete #15/Bd:125
    9345 
    9346 > delete #15/Bd:124
    9347 
    9348 > delete #15/Bd:123
    9349 
    9350 > delete #15/Bd:122
    9351 
    9352 > delete #15/Bd:121
    9353 
    9354 > delete #15/Bd:120
    9355 
    9356 > delete #15/Bd:119
    9357 
    9358 > delete #15/Bd:118
    9359 
    9360 > delete #15/Bd:117
    9361 
    9362 > delete #15/Bd:116
    9363 
    9364 > delete #15/Bd:115
    9365 
    9366 > delete #15/Bd:114
    9367 
    9368 > delete #15/Bd:113
    9369 
    9370 > delete #15/Bd:112
    9371 
    9372 > delete #15/Bd:111
    9373 
    9374 > delete #15/Bd:110
    9375 
    9376 > delete #15/Bd:109
    9377 
    9378 > delete #15/Bd:108
    9379 
    9380 > delete #15/Bd:107
    9381 
    9382 > delete #15/Bd:106
    9383 
    9384 > delete #15/Bd:105
    9385 
    9386 > delete #15/Bd:104
    9387 
    9388 > delete #15/Bd:103
    9389 
    9390 > delete #15/Bd:102
    9391 
    9392 > delete #15/Bd:101
    9393 
    9394 > delete #15/Bd:100
    9395 
    9396 > delete #15/Bd:99
    9397 
    9398 > delete #15/Bd:98
    9399 
    9400 > delete #15/Bd:97
    9401 
    9402 > delete #15/Bd:96
    9403 
    9404 > delete #15/Bd:95
    9405 
    9406 > delete #15/Bd:94
    9407 
    9408 > delete #15/Bd:93
    9409 
    9410 > delete #15/Bd:92
    9411 
    9412 > delete #15/Bd:91
    9413 
    9414 > delete #15/Bd:90
    9415 
    9416 > delete #15/Bd:89
    9417 
    9418 > delete #15/Bd:88
    9419 
    9420 > delete #15/Bd:87
    9421 
    9422 > delete #15/Bd:86
    9423 
    9424 > delete #15/Bd:85
    9425 
    9426 > delete #15/Bd:84
    9427 
    9428 > delete #15/Bd:83
    9429 
    9430 > delete #15/Bd:82
    9431 
    9432 > delete #15/Bd:81
    9433 
    9434 > delete #15/Bd:80
    9435 
    9436 > delete #15/Bd:79
    9437 
    9438 > delete #15/Bd:78
    9439 
    9440 > delete #15/Bd:77
    9441 
    9442 > delete #15/Bd:76
    9443 
    9444 > delete #15/Bd:75
    9445 
    9446 > delete #15/Bd:74
    9447 
    9448 > delete #15/Bd:73
    9449 
    9450 > delete #15/Bd:72
    9451 
    9452 > delete #15/Bd:71
    9453 
    9454 > delete #15/Bd:70
    9455 
    9456 > delete #15/Bd:69
    9457 
    9458 > delete #15/Bd:68
    9459 
    9460 > delete #15/Bd:67
    9461 
    9462 > delete #15/Bd:66
    9463 
    9464 > delete #15/Bd:65
    9465 
    9466 > delete #15/Bd:64
    9467 
    9468 > delete #15/Bd:63
    9469 
    9470 > delete #15/Bd:62
    9471 
    9472 > delete #15/Bd:61
    9473 
    9474 > delete #15/Bd:60
    9475 
    9476 > delete #15/Bd:59
    9477 
    9478 > delete #15/Bd:58
    9479 
    9480 > delete #15/Bd:57
    9481 
    9482 > delete #15/Bd:56
    9483 
    9484 > delete #15/Bd:55
    9485 
    9486 > delete #15/Bd:54
    9487 
    9488 > delete #15/Bd:53
    9489 
    9490 > delete #15/Bd:52
    9491 
    9492 > delete #15/Bd:51
    9493 
    9494 > delete #15/Bd:50
    9495 
    9496 > delete #15/Bd:49
    9497 
    9498 > delete #15/Bd:48
    9499 
    9500 > delete #15/Bd:47
    9501 
    9502 > delete #15/Bd:46
    9503 
    9504 > delete #15/Bd:45
    9505 
    9506 > delete #15/Bd:44
    9507 
    9508 > delete #15/Bd:43
    9509 
    9510 > delete #15/Bd:42
    9511 
    9512 > delete #15/Bd:41
    9513 
    9514 > delete #15/Bd:40
    9515 
    9516 > delete #15/Bd:39
    9517 
    9518 > delete #15/Bd:38
    9519 
    9520 > delete #15/Bd:37
    9521 
    9522 > delete #15/Bd:36
    9523 
    9524 > delete #15/Bd:35
    9525 
    9526 > delete #15/Bd:34
    9527 
    9528 > delete #15/Bd:33
    9529 
    9530 > delete #15/Bd:32
    9531 
    9532 > delete #15/Bd:31
    9533 
    9534 > delete #15/Bd:30
    9535 
    9536 > delete #15/Bd:29
    9537 
    9538 > delete #15/Bd:28
    9539 
    9540 > delete #15/Bd:27
    9541 
    9542 > delete #15/Bd:26
    9543 
    9544 > delete #15/Bd:25
    9545 
    9546 > delete #15/Bd:24
    9547 
    9548 > delete #15/Bd:23
    9549 
    9550 > delete #15/Bd:22
    9551 
    9552 > delete #15/Bd:21
    9553 
    9554 > delete #15/Bd:20
    9555 
    9556 > delete #15/Bd:19
    9557 
    9558 > delete #15/Bd:18
    9559 
    9560 > delete #15/Bd:17
    9561 
    9562 > delete #15/Bd:16
    9563 
    9564 > delete #15/Bd:15
    9565 
    9566 > delete #15/Bd:14
    9567 
    9568 > delete #15/Bd:13
    9569 
    9570 > delete #15/Bd:12
    9571 
    9572 > delete #15/Bd:11
    9573 
    9574 > delete #15/Bd:10
    9575 
    9576 > delete #15/Bd:9
    9577 
    9578 > delete #15/Bd:8
    9579 
    9580 > delete #15/Bd:7
    9581 
    9582 > delete #15/Bd:6
    9583 
    9584 > delete #15/Bd:5
    9585 
    9586 > delete #15/Bd:4
    9587 
    9588 > delete #15/Bd:3
    9589 
    9590 > delete #15/Bd:2
    9591 
    9592 > delete #15/Bd:1
    9593 
    9594 > renumber #15/Bd start 173
    9595 
    9596 Traceback (most recent call last): 
    9597 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    9598 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    9599 line 188, in   
    9600 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    9601 File
    9602 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    9603 packages/chimerax/core/commands/run.py", line 49, in run 
    9604 results = command.run(text, log=log, return_json=return_json) 
    9605 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    9606 File
    9607 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    9608 packages/chimerax/core/commands/cli.py", line 3213, in run 
    9609 result = ci.function(session, **kw_args) 
    9610 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    9611 File
    9612 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    9613 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    9614 raise UserError("No residues specified") 
    9615 chimerax.core.errors.UserError: No residues specified 
    9616  
    9617 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    9618 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    9619 
    9620 > close session
    9621 
    9622 > open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    9623 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    9624 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
    9625 
    9626 Summary of feedback from opening
    9627 /Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    9628 rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    9629 Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif 
    9630 --- 
    9631 warnings | Missing entity information. Treating each chain as a separate entity. 
    9632 Missing or incomplete sequence information. Inferred polymer connectivity. 
    9633  
    9634  
    9635 Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #1 
    9636 --- 
    9637 Chain | Description 
    9638 0 | No description available 
    9639 1 | No description available 
    9640 2 | No description available 
    9641 3 | No description available 
    9642 4 | No description available 
    9643 5 | No description available 
    9644 6 | No description available 
    9645 7 | No description available 
    9646 8 | No description available 
    9647 9 | No description available 
    9648 A | No description available 
    9649 A3 | No description available 
    9650 A7 | No description available 
    9651 A8 | No description available 
    9652 AA | No description available 
    9653 AB | No description available 
    9654 AD | No description available 
    9655 AE | No description available 
    9656 AF | No description available 
    9657 AH Ck Du | No description available 
    9658 AK DC | No description available 
    9659 AL | No description available 
    9660 AN | No description available 
    9661 AP | No description available 
    9662 AQ BE CD DN Df Dl Dn Gj | No description available 
    9663 AU | No description available 
    9664 AY | No description available 
    9665 AZ | No description available 
    9666 Ab | No description available 
    9667 Ad | No description available 
    9668 Ae S | No description available 
    9669 Af | No description available 
    9670 Ah | No description available 
    9671 Aj | No description available 
    9672 Al | No description available 
    9673 Am | No description available 
    9674 Aq C5 Ct Cv DV | No description available 
    9675 As E | No description available 
    9676 Av | No description available 
    9677 Aw | No description available 
    9678 Ay B3 | No description available 
    9679 Az | No description available 
    9680 B | No description available 
    9681 B1 | No description available 
    9682 BB | No description available 
    9683 BD | No description available 
    9684 BK | No description available 
    9685 BL | No description available 
    9686 BO | No description available 
    9687 BS | No description available 
    9688 BU | No description available 
    9689 BW | No description available 
    9690 Bi | No description available 
    9691 Bk | No description available 
    9692 Br U | No description available 
    9693 Bu | No description available 
    9694 Bx | No description available 
    9695 Bz | No description available 
    9696 C | No description available 
    9697 C2 | No description available 
    9698 CC | No description available 
    9699 CE | No description available 
    9700 CG | No description available 
    9701 CT | No description available 
    9702 CW | No description available 
    9703 CY | No description available 
    9704 Cd | No description available 
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    9905 z | No description available 
    9906  
    9907 
    9908 > hide atoms
    9909 
    9910 > show cartoons
    9911 
    9912 > select #1/FN
    9913 
    9914 522 atoms, 530 bonds, 69 residues, 1 model selected 
    9915 
    9916 > open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    9917 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    9918 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/manualAnnotation.cxs"
    9919 
    9920 Opened cryosparc_P31_J245_map_sharp_Zflipped.mrc as #1.1.1.1, grid size
    9921 290,290,290, pixel 1.16, shown at level 0.337, step 1, values float32 
    9922 opened ChimeraX session 
    9923 
    9924 > color #1 gray
    9925 
    9926 > color
    9927 > #1/L,W,FJ,y,FR,Ee,6,F1,Ei,Eq,Ek,Q,Eg,E8,d,Fa,Es,GJ,EZ,F7,EV,FH,0,Ew,Ec,Fq,GV,EJ,FT,c,x,F6,FZ,FN,Fg,Em,Ea,1,Ep,E5,k,EO,FQ,o,FI,Er,m,Ej,v,Fx,ES,FM,FA,j,FY,q,Eb,s,Fh,Ev,Fd,Ez,El,Et,u,E2,n,FC,EQ,FW
    9928 > magenta
    9929 
    9930 > color
    9931 > #1/GC,Bd,Ca,AP,BN,FF,Fo,Cy,EY,FV,Ey,K,Gc,Ex,E6,Ai,U,GO,Z,Fc,2,E,Ff,BM,A,Ef,Bi,GM,4,D,CN,FG,GH,GW,Fj,E4,Er,ER,Fz,p,Dk,Bz,Br,F6,q,Aw,X,Y,9,c,Ge,Du,Ad,t,FU,By,AH,Dq,GT,DS,Fp,7,8,FJ,Fu,D6,Dl,Dk,Dt,C2,GR,FK,Gb,BA,B9,Ej,AC,k,Fn,o,AE,C8,Bo,Ep,GU,FE,Az,J,AK,Cj,h,i,Cw,As,r,l,BD,GA,a,En,Eo,GQ,B2,AB,FM,BG,A8,B0,C1,GN,FL,FP
    9932 > green
    9933 
    9934 > transparency 0
    9935 
    9936 > transparency 50
    9937 
    9938 > view #7/468
    9939 
    9940 No objects specified. 
    9941 
    9942 > view #7:468
    9943 
    9944 > show #7 models
    9945 
    9946 > open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    9947 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    9948 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
    9949 
    9950 Summary of feedback from opening
    9951 /Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    9952 rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    9953 Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif 
    9954 --- 
    9955 warnings | Missing entity information. Treating each chain as a separate entity. 
    9956 Missing or incomplete sequence information. Inferred polymer connectivity. 
    9957  
    9958  
    9959 Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #15 
    9960 --- 
    9961 Chain | Description 
    9962 0 | No description available 
    9963 1 | No description available 
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    10061 EX | No description available 
    10062 EY | No description available 
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    10228 y | No description available 
    10229 z | No description available 
    10230  
    10231 
    10232 > select #15
    10233 
    10234 39855 atoms, 40483 bonds, 5089 residues, 1 model selected 
    10235 
    10236 > hide sel atoms
    10237 
    10238 > show sel cartoons
    10239 
    10240 > select clear
    10241 
    10242 > delete #14/FN:35
    10243 
    10244 > delete #15/FN:35
    10245 
    10246 > renumber #14/FN:36-69 start 45
    10247 
    10248 No residues specified 
    10249 
    10250 > renumber #15/FN:36-69 start 45
    10251 
    10252 34 residues renumbered 
    10253 
    10254 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    10255 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    10256 > #15 alignmentsMod1Mod.txt
    10257 
    10258 ['1', '8'] 
    10259 ['1', '8'] 
    10260 ['11'] 
    10261 ['1', '1'] 
    10262 ['11'] 
    10263 ['1', '1'] 
    10264 ['1', '3'] 
    10265 ['1', '3'] 
    10266 ['11'] 
    10267 ['1', '1'] 
    10268 ['1', '4'] 
    10269 ['1', '4'] 
    10270 ['1', '15'] 
    10271 ['1', '15'] 
    10272 ['11'] 
    10273 ['1', '1'] 
    10274 ['1', '9'] 
    10275 ['1', '9'] 
    10276 ['1', '4'] 
    10277 ['1', '4'] 
    10278 ['1', '28'] 
    10279 ['1', '28'] 
    10280 ['1', '15'] 
    10281 ['1', '15'] 
    10282 ['7', '15'] 
    10283 ['7', '15'] 
    10284 ['2', '44'] 
    10285 ['2', '44'] 
    10286 ['1', '7'] 
    10287 ['1', '7'] 
    10288 ['1', '8'] 
    10289 ['1', '8'] 
    10290 ['1', '13'] 
    10291 ['1', '13'] 
    10292 ['11'] 
    10293 ['1', '1'] 
    10294 ['1', '31'] 
    10295 ['1', '31'] 
    10296 ['12'] 
    10297 ['1', '2'] 
    10298 ['6', '22'] 
    10299 ['6', '22'] 
    10300 ['5', '21'] 
    10301 ['5', '21'] 
    10302 ['3', '140'] 
    10303 ['3', '140'] 
    10304 ['1', '3'] 
    10305 ['1', '3'] 
    10306 ['1', '8'] 
    10307 ['1', '8'] 
    10308 ['2', '18'] 
    10309 ['2', '18'] 
    10310 ['1', '7'] 
    10311 ['1', '7'] 
    10312 ['7', '12'] 
    10313 ['7', '12'] 
    10314 ['1', '10'] 
    10315 ['1', '10'] 
    10316 ['12'] 
    10317 ['1', '2'] 
    10318 ['1', '10'] 
    10319 ['1', '10'] 
    10320 ['4', '63'] 
    10321 ['4', '63'] 
    10322 ['9', '11'] 
    10323 ['9', '11'] 
    10324 ['11'] 
    10325 ['1', '1'] 
    10326 ['1', '5'] 
    10327 ['1', '5'] 
    10328 ['5', '33'] 
    10329 ['5', '33'] 
    10330 ['1', '4'] 
    10331 ['1', '4'] 
    10332 ['1', '74'] 
    10333 ['1', '74'] 
    10334 ['3', '18'] 
    10335 ['3', '18'] 
    10336 ['2', '22'] 
    10337 ['2', '22'] 
    10338 ['1', '4'] 
    10339 ['1', '4'] 
    10340 ['1', '3'] 
    10341 ['1', '3'] 
    10342 ['2', '81'] 
    10343 ['2', '81'] 
    10344 ['1', '8'] 
    10345 ['1', '8'] 
    10346 ['1', '5'] 
    10347 ['1', '5'] 
    10348 ['14', '47'] 
    10349 ['14', '47'] 
    10350 ['1', '5'] 
    10351 ['1', '5'] 
    10352 ['1', '3'] 
    10353 ['1', '3'] 
    10354 ['11'] 
    10355 ['1', '1'] 
    10356 ['1', '7'] 
    10357 ['1', '7'] 
    10358 ['1', '14'] 
    10359 ['1', '14'] 
    10360 ['1', '5'] 
    10361 ['1', '5'] 
    10362 ['1', '4'] 
    10363 ['1', '4'] 
    10364 ['1', '7'] 
    10365 ['1', '7'] 
    10366 ['1', '14'] 
    10367 ['1', '14'] 
    10368 ['1', '25'] 
    10369 ['1', '25'] 
    10370 ['1', '20'] 
    10371 ['1', '20'] 
    10372 ['1', '8'] 
    10373 ['1', '8'] 
    10374 ['11'] 
    10375 ['1', '1'] 
    10376 ['12'] 
    10377 ['1', '2'] 
    10378 ['12'] 
    10379 ['1', '2'] 
    10380 ['1', '18'] 
    10381 ['1', '18'] 
    10382 ['1', '70'] 
    10383 ['1', '70'] 
    10384 ['12'] 
    10385 ['1', '2'] 
    10386 ['12'] 
    10387 ['1', '2'] 
    10388 ['1', '12'] 
    10389 ['1', '12'] 
    10390 ['1', '5'] 
    10391 ['1', '5'] 
    10392 ['1', '14'] 
    10393 ['1', '14'] 
    10394 ['1', '3'] 
    10395 ['1', '3'] 
    10396 ['12'] 
    10397 ['1', '2'] 
    10398 ['1', '3'] 
    10399 ['1', '3'] 
    10400 ['1', '7'] 
    10401 ['1', '7'] 
    10402 ['1', '32'] 
    10403 ['1', '32'] 
    10404 ['11'] 
    10405 ['1', '1'] 
    10406 ['12'] 
    10407 ['1', '2'] 
    10408 ['9', '18'] 
    10409 ['9', '18'] 
    10410 ['11'] 
    10411 ['1', '1'] 
    10412 ['1', '4'] 
    10413 ['1', '4'] 
    10414 ['12'] 
    10415 ['1', '2'] 
    10416 ['1', '10'] 
    10417 ['1', '10'] 
    10418 ['1', '5'] 
    10419 ['1', '5'] 
    10420 ['12'] 
    10421 ['1', '2'] 
    10422 ['1', '20'] 
    10423 ['1', '20'] 
    10424 ['1', '7'] 
    10425 ['1', '7'] 
    10426 ['11'] 
    10427 ['1', '1'] 
    10428 ['12'] 
    10429 ['1', '2'] 
    10430 ['11'] 
    10431 ['1', '1'] 
    10432 ['11'] 
    10433 ['1', '1'] 
    10434 ['12'] 
    10435 ['1', '2'] 
    10436 ['1', '3'] 
    10437 ['1', '3'] 
    10438 ['11', '32'] 
    10439 ['11', '32'] 
    10440 ['1', '12'] 
    10441 ['1', '12'] 
    10442 ['1', '3'] 
    10443 ['1', '3'] 
    10444 ['2', '15'] 
    10445 ['2', '15'] 
    10446 ['11'] 
    10447 ['1', '1'] 
    10448 ['11'] 
    10449 ['1', '1'] 
    10450 ['1', '153'] 
    10451 ['1', '153'] 
    10452 ['11'] 
    10453 ['1', '1'] 
    10454 ['1', '39'] 
    10455 ['1', '39'] 
    10456 ['1', '27'] 
    10457 ['1', '27'] 
    10458 ['1', '37'] 
    10459 ['1', '37'] 
    10460 ['12'] 
    10461 ['1', '2'] 
    10462 ['11'] 
    10463 ['1', '1'] 
    10464 ['11'] 
    10465 ['1', '1'] 
    10466 ['1', '56'] 
    10467 ['1', '56'] 
    10468 ['1', '9'] 
    10469 ['1', '9'] 
    10470 ['1', '4'] 
    10471 ['1', '4'] 
    10472 ['12'] 
    10473 ['1', '2'] 
    10474 ['1', '3'] 
    10475 ['1', '3'] 
    10476 ['12'] 
    10477 ['1', '2'] 
    10478 ['11'] 
    10479 ['1', '1'] 
    10480 ['1', '10'] 
    10481 ['1', '10'] 
    10482 ['1', '4'] 
    10483 ['1', '4'] 
    10484 ['11'] 
    10485 ['1', '1'] 
    10486 ['12'] 
    10487 ['1', '2'] 
    10488 ['1', '30'] 
    10489 ['1', '30'] 
    10490 ['3', '45'] 
    10491 ['3', '45'] 
    10492 ['1', '9'] 
    10493 ['1', '9'] 
    10494 ['2', '4'] 
    10495 ['2', '4'] 
    10496 ['12'] 
    10497 ['1', '2'] 
    10498 ['1', '59'] 
    10499 ['1', '59'] 
    10500 ['1', '13'] 
    10501 ['1', '13'] 
    10502 ['1', '34'] 
    10503 ['1', '34'] 
    10504 ['1', '5'] 
    10505 ['1', '5'] 
    10506 ['3', '25'] 
    10507 ['3', '25'] 
    10508 ['1', '4'] 
    10509 ['1', '4'] 
    10510 ['1', '3'] 
    10511 ['1', '3'] 
    10512 ['6', '20'] 
    10513 ['6', '20'] 
    10514 ['1', '11'] 
    10515 ['1', '11'] 
    10516 ['3', '39'] 
    10517 ['3', '39'] 
    10518 ['1', '27'] 
    10519 ['1', '27'] 
    10520 ['1', '21'] 
    10521 ['1', '21'] 
    10522 ['11'] 
    10523 ['1', '1'] 
    10524 ['1', '4'] 
    10525 ['1', '4'] 
    10526 ['2', '33'] 
    10527 ['2', '33'] 
    10528 ['11'] 
    10529 ['1', '1'] 
    10530 ['11'] 
    10531 ['1', '1'] 
    10532 ['12'] 
    10533 ['1', '2'] 
    10534 ['11'] 
    10535 ['1', '1'] 
    10536 ['11'] 
    10537 ['1', '1'] 
    10538 ['1', '8'] 
    10539 ['1', '8'] 
    10540 LtaP35.1590.mRNA_A 
    10541 LtaP35.1450.mRNA_A 
    10542 LtaP07.0060.mRNA_A 
    10543 LtaP32.3800.mRNA_A 
    10544 LtaP13.0770.mRNA_A 
    10545 sp|P14548.2|CYB_LEITA_A 
    10546 LtaP35.0210.mRNA_A 
    10547 GET91263.1_A 
    10548 LtaP35.0250.mRNA_A 
    10549 GET89654.1_A 
    10550 
    10551 > combine #15 close false name renamedAndRenumberedModel
    10552 
    10553 Renumering chain LtaP35.1590.mRNA_A 
    10554 ['1', '8'] 
    10555 
    10556 > select #16/GC
    10557 
    10558 66 atoms, 66 bonds, 8 residues, 1 model selected 
    10559 0 
    10560 17 
    10561 >17 
    10562 > renumber #16/GC start 17
    10563 
    10564 8 residues renumbered 
    10565 ['1', '1'] 
    10566 
    10567 > select #16/Bd
    10568 
    10569 4 atoms, 3 bonds, 1 residue, 1 model selected 
    10570 24 
    10571 25 
    10572 >1 
    10573 > renumber #16/Bd start 25
    10574 
    10575 1 residues renumbered 
    10576 
    10577 > changechains #16/Bd GC
    10578 
    10579 Chain IDs of 1 residues changed 
    10580 ['1', '1'] 
    10581 
    10582 > select #16/Ca
    10583 
    10584 4 atoms, 3 bonds, 1 residue, 1 model selected 
    10585 25 
    10586 26 
    10587 >1 
    10588 > renumber #16/Ca start 26
    10589 
    10590 1 residues renumbered 
    10591 
    10592 > changechains #16/Ca GC
    10593 
    10594 Chain IDs of 1 residues changed 
    10595 ['1', '3'] 
    10596 
    10597 > select #16/AP
    10598 
    10599 19 atoms, 19 bonds, 3 residues, 1 model selected 
    10600 26 
    10601 27 
    10602 >1 
    10603 > renumber #16/AP start 27
    10604 
    10605 3 residues renumbered 
    10606 
    10607 > changechains #16/AP GC
    10608 
    10609 Chain IDs of 3 residues changed 
    10610 ['1', '1'] 
    10611 
    10612 > select #16/BN
    10613 
    10614 6 atoms, 5 bonds, 1 residue, 1 model selected 
    10615 29 
    10616 30 
    10617 >1 
    10618 > renumber #16/BN start 30
    10619 
    10620 1 residues renumbered 
    10621 
    10622 > changechains #16/BN GC
    10623 
    10624 Chain IDs of 1 residues changed 
    10625 ['1', '4'] 
    10626 
    10627 > select #16/FF
    10628 
    10629 32 atoms, 32 bonds, 4 residues, 1 model selected 
    10630 30 
    10631 31 
    10632 >1 
    10633 > renumber #16/FF start 31
    10634 
    10635 4 residues renumbered 
    10636 
    10637 > changechains #16/FF GC
    10638 
    10639 Chain IDs of 4 residues changed 
    10640 ['1', '15'] 
    10641 
    10642 > select #16/Fo
    10643 
    10644 103 atoms, 106 bonds, 15 residues, 1 model selected 
    10645 34 
    10646 35 
    10647 >1 
    10648 > renumber #16/Fo start 35
    10649 
    10650 15 residues renumbered 
    10651 
    10652 > changechains #16/Fo GC
    10653 
    10654 Chain IDs of 15 residues changed 
    10655 ['1', '1'] 
    10656 
    10657 > select #16/Cy
    10658 
    10659 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10660 49 
    10661 50 
    10662 >1 
    10663 > renumber #16/Cy start 50
    10664 
    10665 1 residues renumbered 
    10666 
    10667 > changechains #16/Cy GC
    10668 
    10669 Chain IDs of 1 residues changed 
    10670 ['1', '9'] 
    10671 
    10672 > select #16/EY
    10673 
    10674 66 atoms, 67 bonds, 9 residues, 1 model selected 
    10675 50 
    10676 51 
    10677 >1 
    10678 > renumber #16/EY start 51
    10679 
    10680 9 residues renumbered 
    10681 
    10682 > changechains #16/EY GC
    10683 
    10684 Chain IDs of 9 residues changed 
    10685 ['1', '4'] 
    10686 
    10687 > select #16/FV
    10688 
    10689 24 atoms, 23 bonds, 4 residues, 1 model selected 
    10690 59 
    10691 60 
    10692 >1 
    10693 > renumber #16/FV start 60
    10694 
    10695 4 residues renumbered 
    10696 
    10697 > changechains #16/FV GC
    10698 
    10699 Chain IDs of 4 residues changed 
    10700 ['1', '28'] 
    10701 
    10702 > select #16/Ey
    10703 
    10704 210 atoms, 213 bonds, 28 residues, 1 model selected 
    10705 63 
    10706 64 
    10707 >1 
    10708 > renumber #16/Ey start 64
    10709 
    10710 28 residues renumbered 
    10711 
    10712 > changechains #16/Ey GC
    10713 
    10714 Chain IDs of 28 residues changed 
    10715 ['1', '15'] 
    10716 
    10717 > select #16/K
    10718 
    10719 102 atoms, 102 bonds, 15 residues, 1 model selected 
    10720 91 
    10721 92 
    10722 >1 
    10723 > renumber #16/K start 92
    10724 
    10725 15 residues renumbered 
    10726 
    10727 > changechains #16/K GC
    10728 
    10729 Chain IDs of 15 residues changed 
    10730 ['7', '15'] 
    10731 
    10732 > select #16/L
    10733 
    10734 184 atoms, 187 bonds, 22 residues, 1 model selected 
    10735 106 
    10736 107 
    10737 >1 
    10738 > renumber #16/L start 107
    10739 
    10740 22 residues renumbered 
    10741 
    10742 > changechains #16/L GC
    10743 
    10744 Chain IDs of 22 residues changed 
    10745 ['2', '44'] 
    10746 
    10747 > select #16/Ee
    10748 
    10749 355 atoms, 363 bonds, 44 residues, 1 model selected 
    10750 128 
    10751 129 
    10752 >1 
    10753 > renumber #16/Ee start 129
    10754 
    10755 44 residues renumbered 
    10756 
    10757 > changechains #16/Ee GC
    10758 
    10759 Chain IDs of 44 residues changed 
    10760 Renumering chain LtaP35.1450.mRNA_A 
    10761 ['1', '7'] 
    10762 
    10763 > select #16/Gc
    10764 
    10765 52 atoms, 52 bonds, 7 residues, 1 model selected 
    10766 0 
    10767 2 
    10768 >2 
    10769 > renumber #16/Gc start 2
    10770 
    10771 7 residues renumbered 
    10772 ['1', '8'] 
    10773 
    10774 > select #16/Ex
    10775 
    10776 55 atoms, 56 bonds, 8 residues, 1 model selected 
    10777 8 
    10778 10 
    10779 >2 
    10780 > renumber #16/Ex start 10
    10781 
    10782 8 residues renumbered 
    10783 
    10784 > changechains #16/Ex Gc
    10785 
    10786 Chain IDs of 8 residues changed 
    10787 ['1', '13'] 
    10788 
    10789 > select #16/E6
    10790 
    10791 98 atoms, 100 bonds, 13 residues, 1 model selected 
    10792 17 
    10793 18 
    10794 >1 
    10795 > renumber #16/E6 start 18
    10796 
    10797 13 residues renumbered 
    10798 
    10799 > changechains #16/E6 Gc
    10800 
    10801 Chain IDs of 13 residues changed 
    10802 ['1', '1'] 
    10803 
    10804 > select #16/Ai
    10805 
    10806 11 atoms, 10 bonds, 1 residue, 1 model selected 
    10807 30 
    10808 31 
    10809 >1 
    10810 > renumber #16/Ai start 31
    10811 
    10812 1 residues renumbered 
    10813 
    10814 > changechains #16/Ai Gc
    10815 
    10816 Chain IDs of 1 residues changed 
    10817 ['1', '31'] 
    10818 
    10819 > select #16/0
    10820 
    10821 233 atoms, 235 bonds, 31 residues, 1 model selected 
    10822 31 
    10823 32 
    10824 >1 
    10825 > renumber #16/0 start 32
    10826 
    10827 31 residues renumbered 
    10828 
    10829 > changechains #16/0 Gc
    10830 
    10831 Chain IDs of 31 residues changed 
    10832 ['1', '2'] 
    10833 
    10834 > select #16/U
    10835 
    10836 11 atoms, 10 bonds, 2 residues, 1 model selected 
    10837 62 
    10838 63 
    10839 >1 
    10840 > renumber #16/U start 63
    10841 
    10842 2 residues renumbered 
    10843 
    10844 > changechains #16/U Gc
    10845 
    10846 Chain IDs of 2 residues changed 
    10847 ['6', '22'] 
    10848 
    10849 > select #16/d
    10850 
    10851 176 atoms, 182 bonds, 22 residues, 1 model selected 
    10852 64 
    10853 65 
    10854 >1 
    10855 > renumber #16/d start 65
    10856 
    10857 22 residues renumbered 
    10858 
    10859 > changechains #16/d Gc
    10860 
    10861 Chain IDs of 22 residues changed 
    10862 ['5', '21'] 
    10863 
    10864 > select #16/EV
    10865 
    10866 161 atoms, 160 bonds, 21 residues, 1 model selected 
    10867 86 
    10868 87 
    10869 >1 
    10870 > renumber #16/EV start 87
    10871 
    10872 21 residues renumbered 
    10873 
    10874 > changechains #16/EV Gc
    10875 
    10876 Chain IDs of 21 residues changed 
    10877 
    10878 > delete #16/Ew:132
    10879 
    10880 > renumber #16/Ew:133-9999999 start 132
    10881 
    10882 11 residues renumbered 
    10883 ['3', '139'] 
    10884 
    10885 > select #16/Ew
    10886 
    10887 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    10888 107 
    10889 108 
    10890 >1 
    10891 > renumber #16/Ew start 108
    10892 
    10893 142 residues renumbered 
    10894 
    10895 > changechains #16/Ew Gc
    10896 
    10897 Chain IDs of 142 residues changed 
    10898 ['1', '3'] 
    10899 
    10900 > select #16/GO
    10901 
    10902 18 atoms, 18 bonds, 3 residues, 1 model selected 
    10903 249 
    10904 250 
    10905 >1 
    10906 > renumber #16/GO start 250
    10907 
    10908 3 residues renumbered 
    10909 
    10910 > changechains #16/GO Gc
    10911 
    10912 Chain IDs of 3 residues changed 
    10913 ['1', '8'] 
    10914 
    10915 > select #16/Z
    10916 
    10917 69 atoms, 71 bonds, 8 residues, 1 model selected 
    10918 252 
    10919 253 
    10920 >1 
    10921 > renumber #16/Z start 253
    10922 
    10923 8 residues renumbered 
    10924 
    10925 > changechains #16/Z Gc
    10926 
    10927 Chain IDs of 8 residues changed 
    10928 ['2', '18'] 
    10929 
    10930 > select #16/ES
    10931 
    10932 163 atoms, 164 bonds, 18 residues, 1 model selected 
    10933 260 
    10934 262 
    10935 >2 
    10936 > renumber #16/ES start 262
    10937 
    10938 18 residues renumbered 
    10939 
    10940 > changechains #16/ES Gc
    10941 
    10942 Chain IDs of 18 residues changed 
    10943 ['1', '7'] 
    10944 
    10945 > select #16/Fc
    10946 
    10947 40 atoms, 41 bonds, 7 residues, 1 model selected 
    10948 279 
    10949 282 
    10950 >3 
    10951 > renumber #16/Fc start 282
    10952 
    10953 7 residues renumbered 
    10954 
    10955 > changechains #16/Fc Gc
    10956 
    10957 Chain IDs of 7 residues changed 
    10958 ['7', '12'] 
    10959 
    10960 > select #16/Fa
    10961 
    10962 177 atoms, 179 bonds, 24 residues, 1 model selected 
    10963 288 
    10964 289 
    10965 >1 
    10966 > renumber #16/Fa start 289
    10967 
    10968 24 residues renumbered 
    10969 
    10970 > changechains #16/Fa Gc
    10971 
    10972 Chain IDs of 24 residues changed 
    10973 ['1', '10'] 
    10974 
    10975 > select #16/2
    10976 
    10977 81 atoms, 83 bonds, 10 residues, 1 model selected 
    10978 312 
    10979 314 
    10980 >2 
    10981 > renumber #16/2 start 314
    10982 
    10983 10 residues renumbered 
    10984 
    10985 > changechains #16/2 Gc
    10986 
    10987 Chain IDs of 10 residues changed 
    10988 ['1', '2'] 
    10989 
    10990 > select #16/E
    10991 
    10992 16 atoms, 16 bonds, 2 residues, 1 model selected 
    10993 323 
    10994 326 
    10995 >3 
    10996 > renumber #16/E start 326
    10997 
    10998 2 residues renumbered 
    10999 
    11000 > changechains #16/E Gc
    11001 
    11002 Chain IDs of 2 residues changed 
    11003 ['1', '10'] 
    11004 
    11005 > select #16/Ff
    11006 
    11007 75 atoms, 76 bonds, 10 residues, 1 model selected 
    11008 327 
    11009 328 
    11010 >1 
    11011 > renumber #16/Ff start 328
    11012 
    11013 10 residues renumbered 
    11014 
    11015 > changechains #16/Ff Gc
    11016 
    11017 Chain IDs of 10 residues changed 
    11018 ['4', '63'] 
    11019 
    11020 > select #16/E2
    11021 
    11022 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    11023 337 
    11024 338 
    11025 >1 
    11026 > renumber #16/E2 start 338
    11027 
    11028 132 residues renumbered 
    11029 
    11030 > changechains #16/E2 Gc
    11031 
    11032 Chain IDs of 132 residues changed 
    11033 ['9', '11'] 
    11034 
    11035 > select #16/W
    11036 
    11037 182 atoms, 189 bonds, 20 residues, 1 model selected 
    11038 469 
    11039 470 
    11040 >1 
    11041 > renumber #16/W start 470
    11042 
    11043 20 residues renumbered 
    11044 
    11045 > changechains #16/W Gc
    11046 
    11047 Chain IDs of 20 residues changed 
    11048 ['1', '1'] 
    11049 
    11050 > select #16/BM
    11051 
    11052 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11053 489 
    11054 490 
    11055 >1 
    11056 > renumber #16/BM start 490
    11057 
    11058 1 residues renumbered 
    11059 
    11060 > changechains #16/BM Gc
    11061 
    11062 Chain IDs of 1 residues changed 
    11063 Renumering chain LtaP07.0060.mRNA_A 
    11064 ['1', '5'] 
    11065 
    11066 > select #16/A
    11067 
    11068 32 atoms, 33 bonds, 5 residues, 1 model selected 
    11069 0 
    11070 5 
    11071 >5 
    11072 > renumber #16/A start 5
    11073 
    11074 5 residues renumbered 
    11075 ['5', '33'] 
    11076 
    11077 > select #16/Fd
    11078 
    11079 314 atoms, 324 bonds, 36 residues, 1 model selected 
    11080 9 
    11081 10 
    11082 >1 
    11083 > renumber #16/Fd start 10
    11084 
    11085 36 residues renumbered 
    11086 
    11087 > changechains #16/Fd A
    11088 
    11089 Chain IDs of 36 residues changed 
    11090 ['1', '4'] 
    11091 
    11092 > select #16/Ef
    11093 
    11094 24 atoms, 23 bonds, 4 residues, 1 model selected 
    11095 45 
    11096 46 
    11097 >1 
    11098 > renumber #16/Ef start 46
    11099 
    11100 4 residues renumbered 
    11101 
    11102 > changechains #16/Ef A
    11103 
    11104 Chain IDs of 4 residues changed 
    11105 ['1', '74'] 
    11106 
    11107 > select #16/Eg
    11108 
    11109 577 atoms, 589 bonds, 74 residues, 1 model selected 
    11110 49 
    11111 50 
    11112 >1 
    11113 > renumber #16/Eg start 50
    11114 
    11115 74 residues renumbered 
    11116 
    11117 > changechains #16/Eg A
    11118 
    11119 Chain IDs of 74 residues changed 
    11120 ['3', '18'] 
    11121 
    11122 > select #16/j
    11123 
    11124 160 atoms, 162 bonds, 22 residues, 1 model selected 
    11125 123 
    11126 124 
    11127 >1 
    11128 > renumber #16/j start 124
    11129 
    11130 22 residues renumbered 
    11131 
    11132 > changechains #16/j A
    11133 
    11134 Chain IDs of 22 residues changed 
    11135 
    11136 > renumber #16/Ei:7-9999999 start 8
    11137 
    11138 19 residues renumbered 
    11139 
    11140 > ~bond #16/Ei:6@C #16/Ei:8@N
    11141 
    11142 ['2', '21'] 
    11143 
    11144 > select #16/Ei
    11145 
    11146 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    11147 145 
    11148 145 
    11149 >0 
    11150 
    11151 > delete #16/Ei:1
    11152 
    11153 > renumber #16/Ei start 146
    11154 
    11155 24 residues renumbered 
    11156 
    11157 > changechains #16/Ei A
    11158 
    11159 Chain IDs of 24 residues changed 
    11160 ['1', '4'] 
    11161 
    11162 > select #16/Bi
    11163 
    11164 23 atoms, 22 bonds, 4 residues, 1 model selected 
    11165 170 
    11166 168 
    11167 >-2 
    11168 
    11169 > delete #16/Bi:3
    11170 
    11171 > delete #16/Bi:2
    11172 
    11173 > delete #16/Bi:1
    11174 
    11175 > renumber #16/Bi start 171
    11176 
    11177 1 residues renumbered 
    11178 
    11179 > changechains #16/Bi A
    11180 
    11181 Chain IDs of 1 residues changed 
    11182 ['1', '3'] 
    11183 
    11184 > select #16/GM
    11185 
    11186 21 atoms, 20 bonds, 3 residues, 1 model selected 
    11187 171 
    11188 171 
    11189 >0 
    11190 
    11191 > delete #16/GM:1
    11192 
    11193 > renumber #16/GM start 172
    11194 
    11195 2 residues renumbered 
    11196 
    11197 > changechains #16/GM A
    11198 
    11199 Chain IDs of 2 residues changed 
    11200 ['2', '81'] 
    11201 
    11202 > select #16/E8
    11203 
    11204 695 atoms, 717 bonds, 86 residues, 1 model selected 
    11205 173 
    11206 174 
    11207 >1 
    11208 > renumber #16/E8 start 174
    11209 
    11210 86 residues renumbered 
    11211 
    11212 > changechains #16/E8 A
    11213 
    11214 Chain IDs of 86 residues changed 
    11215 Renumering chain LtaP32.3800.mRNA_A 
    11216 ['1', '8'] 
    11217 
    11218 > select #16/N
    11219 
    11220 66 atoms, 69 bonds, 8 residues, 1 model selected 
    11221 0 
    11222 34 
    11223 >34 
    11224 > renumber #16/N start 34
    11225 
    11226 8 residues renumbered 
    11227 ['1', '5'] 
    11228 
    11229 > select #16/GZ
    11230 
    11231 35 atoms, 34 bonds, 5 residues, 1 model selected 
    11232 41 
    11233 42 
    11234 >1 
    11235 > renumber #16/GZ start 42
    11236 
    11237 5 residues renumbered 
    11238 
    11239 > changechains #16/GZ N
    11240 
    11241 Chain IDs of 5 residues changed 
    11242 ['14', '47'] 
    11243 
    11244 > select #16/FT
    11245 
    11246 810 atoms, 833 bonds, 101 residues, 1 model selected 
    11247 46 
    11248 47 
    11249 >1 
    11250 > renumber #16/FT start 47
    11251 
    11252 101 residues renumbered 
    11253 
    11254 > changechains #16/FT N
    11255 
    11256 Chain IDs of 101 residues changed 
    11257 Renumering chain LtaP13.0770.mRNA_A 
    11258 ['1', '5'] 
    11259 
    11260 > select #16/4
    11261 
    11262 50 atoms, 51 bonds, 5 residues, 1 model selected 
    11263 0 
    11264 25 
    11265 >25 
    11266 > renumber #16/4 start 25
    11267 
    11268 5 residues renumbered 
    11269 ['1', '3'] 
    11270 
    11271 > select #16/D
    11272 
    11273 20 atoms, 20 bonds, 3 residues, 1 model selected 
    11274 29 
    11275 30 
    11276 >1 
    11277 > renumber #16/D start 30
    11278 
    11279 3 residues renumbered 
    11280 
    11281 > changechains #16/D 4
    11282 
    11283 Chain IDs of 3 residues changed 
    11284 ['1', '1'] 
    11285 
    11286 > select #16/CN
    11287 
    11288 6 atoms, 5 bonds, 1 residue, 1 model selected 
    11289 32 
    11290 33 
    11291 >1 
    11292 > renumber #16/CN start 33
    11293 
    11294 1 residues renumbered 
    11295 
    11296 > changechains #16/CN 4
    11297 
    11298 Chain IDs of 1 residues changed 
    11299 ['1', '7'] 
    11300 
    11301 > select #16/FG
    11302 
    11303 48 atoms, 48 bonds, 7 residues, 1 model selected 
    11304 33 
    11305 34 
    11306 >1 
    11307 > renumber #16/FG start 34
    11308 
    11309 7 residues renumbered 
    11310 
    11311 > changechains #16/FG 4
    11312 
    11313 Chain IDs of 7 residues changed 
    11314 ['1', '14'] 
    11315 
    11316 > select #16/GH
    11317 
    11318 92 atoms, 92 bonds, 14 residues, 1 model selected 
    11319 40 
    11320 57 
    11321 >17 
    11322 > renumber #16/GH start 57
    11323 
    11324 14 residues renumbered 
    11325 
    11326 > changechains #16/GH 4
    11327 
    11328 Chain IDs of 14 residues changed 
    11329 ['1', '5'] 
    11330 
    11331 > select #16/GW
    11332 
    11333 46 atoms, 46 bonds, 5 residues, 1 model selected 
    11334 70 
    11335 71 
    11336 >1 
    11337 > renumber #16/GW start 71
    11338 
    11339 5 residues renumbered 
    11340 
    11341 > changechains #16/GW 4
    11342 
    11343 Chain IDs of 5 residues changed 
    11344 ['1', '4'] 
    11345 
    11346 > select #16/Fj
    11347 
    11348 24 atoms, 23 bonds, 4 residues, 1 model selected 
    11349 75 
    11350 76 
    11351 >1 
    11352 > renumber #16/Fj start 76
    11353 
    11354 4 residues renumbered 
    11355 
    11356 > changechains #16/Fj 4
    11357 
    11358 Chain IDs of 4 residues changed 
    11359 ['1', '7'] 
    11360 
    11361 > select #16/E4
    11362 
    11363 48 atoms, 48 bonds, 7 residues, 1 model selected 
    11364 79 
    11365 80 
    11366 >1 
    11367 > renumber #16/E4 start 80
    11368 
    11369 7 residues renumbered 
    11370 
    11371 > changechains #16/E4 4
    11372 
    11373 Chain IDs of 7 residues changed 
    11374 ['1', '14'] 
    11375 
    11376 > select #16/Er
    11377 
    11378 99 atoms, 102 bonds, 14 residues, 1 model selected 
    11379 86 
    11380 87 
    11381 >1 
    11382 > renumber #16/Er start 87
    11383 
    11384 14 residues renumbered 
    11385 
    11386 > changechains #16/Er 4
    11387 
    11388 Chain IDs of 14 residues changed 
    11389 ['1', '25'] 
    11390 
    11391 > select #16/ER
    11392 
    11393 208 atoms, 211 bonds, 25 residues, 1 model selected 
    11394 100 
    11395 101 
    11396 >1 
    11397 > renumber #16/ER start 101
    11398 
    11399 25 residues renumbered 
    11400 
    11401 > changechains #16/ER 4
    11402 
    11403 Chain IDs of 25 residues changed 
    11404 ['1', '20'] 
    11405 
    11406 > select #16/Fz
    11407 
    11408 146 atoms, 147 bonds, 20 residues, 1 model selected 
    11409 125 
    11410 124 
    11411 >-1 
    11412 
    11413 > delete #16/Fz:2
    11414 
    11415 > delete #16/Fz:1
    11416 
    11417 > renumber #16/Fz start 126
    11418 
    11419 18 residues renumbered 
    11420 
    11421 > changechains #16/Fz 4
    11422 
    11423 Chain IDs of 18 residues changed 
    11424 ['1', '8'] 
    11425 
    11426 > select #16/p
    11427 
    11428 62 atoms, 62 bonds, 8 residues, 1 model selected 
    11429 143 
    11430 144 
    11431 >1 
    11432 > renumber #16/p start 144
    11433 
    11434 8 residues renumbered 
    11435 
    11436 > changechains #16/p 4
    11437 
    11438 Chain IDs of 8 residues changed 
    11439 ['1', '1'] 
    11440 
    11441 > select #16/Dk
    11442 
    11443 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11444 151 
    11445 152 
    11446 >1 
    11447 > renumber #16/Dk start 152
    11448 
    11449 1 residues renumbered 
    11450 
    11451 > changechains #16/Dk 4
    11452 
    11453 Chain IDs of 1 residues changed 
    11454 ['1', '2'] 
    11455 
    11456 > select #16/Bz
    11457 
    11458 16 atoms, 15 bonds, 2 residues, 1 model selected 
    11459 152 
    11460 153 
    11461 >1 
    11462 > renumber #16/Bz start 153
    11463 
    11464 2 residues renumbered 
    11465 
    11466 > changechains #16/Bz 4
    11467 
    11468 Chain IDs of 2 residues changed 
    11469 ['1', '2'] 
    11470 
    11471 > select #16/Br
    11472 
    11473 11 atoms, 10 bonds, 2 residues, 1 model selected 
    11474 154 
    11475 155 
    11476 >1 
    11477 > renumber #16/Br start 155
    11478 
    11479 2 residues renumbered 
    11480 
    11481 > changechains #16/Br 4
    11482 
    11483 Chain IDs of 2 residues changed 
    11484 ['1', '18'] 
    11485 
    11486 > select #16/F6
    11487 
    11488 144 atoms, 146 bonds, 18 residues, 1 model selected 
    11489 156 
    11490 181 
    11491 >25 
    11492 > renumber #16/F6 start 181
    11493 
    11494 18 residues renumbered 
    11495 
    11496 > changechains #16/F6 4
    11497 
    11498 Chain IDs of 18 residues changed 
    11499 ['1', '70'] 
    11500 
    11501 > select #16/q
    11502 
    11503 576 atoms, 590 bonds, 70 residues, 1 model selected 
    11504 198 
    11505 200 
    11506 >2 
    11507 > renumber #16/q start 200
    11508 
    11509 70 residues renumbered 
    11510 
    11511 > changechains #16/q 4
    11512 
    11513 Chain IDs of 70 residues changed 
    11514 ['1', '2'] 
    11515 
    11516 > select #16/Aw
    11517 
    11518 14 atoms, 13 bonds, 2 residues, 1 model selected 
    11519 269 
    11520 270 
    11521 >1 
    11522 > renumber #16/Aw start 270
    11523 
    11524 2 residues renumbered 
    11525 
    11526 > changechains #16/Aw 4
    11527 
    11528 Chain IDs of 2 residues changed 
    11529 ['1', '2'] 
    11530 
    11531 > select #16/X
    11532 
    11533 12 atoms, 11 bonds, 2 residues, 1 model selected 
    11534 271 
    11535 272 
    11536 >1 
    11537 > renumber #16/X start 272
    11538 
    11539 2 residues renumbered 
    11540 
    11541 > changechains #16/X 4
    11542 
    11543 Chain IDs of 2 residues changed 
    11544 ['1', '12'] 
    11545 
    11546 > select #16/Y
    11547 
    11548 92 atoms, 95 bonds, 12 residues, 1 model selected 
    11549 273 
    11550 274 
    11551 >1 
    11552 > renumber #16/Y start 274
    11553 
    11554 12 residues renumbered 
    11555 
    11556 > changechains #16/Y 4
    11557 
    11558 Chain IDs of 12 residues changed 
    11559 ['1', '5'] 
    11560 
    11561 > select #16/9
    11562 
    11563 41 atoms, 42 bonds, 5 residues, 1 model selected 
    11564 285 
    11565 286 
    11566 >1 
    11567 > renumber #16/9 start 286
    11568 
    11569 5 residues renumbered 
    11570 
    11571 > changechains #16/9 4
    11572 
    11573 Chain IDs of 5 residues changed 
    11574 ['1', '14'] 
    11575 
    11576 > select #16/c
    11577 
    11578 112 atoms, 116 bonds, 14 residues, 1 model selected 
    11579 290 
    11580 290 
    11581 >0 
    11582 
    11583 > delete #16/c:1
    11584 
    11585 > renumber #16/c start 291
    11586 
    11587 13 residues renumbered 
    11588 
    11589 > changechains #16/c 4
    11590 
    11591 Chain IDs of 13 residues changed 
    11592 ['1', '3'] 
    11593 
    11594 > select #16/Ge
    11595 
    11596 15 atoms, 14 bonds, 3 residues, 1 model selected 
    11597 303 
    11598 304 
    11599 >1 
    11600 > renumber #16/Ge start 304
    11601 
    11602 3 residues renumbered 
    11603 
    11604 > changechains #16/Ge 4
    11605 
    11606 Chain IDs of 3 residues changed 
    11607 ['1', '2'] 
    11608 
    11609 > select #16/Du
    11610 
    11611 13 atoms, 12 bonds, 2 residues, 1 model selected 
    11612 306 
    11613 309 
    11614 >3 
    11615 > renumber #16/Du start 309
    11616 
    11617 2 residues renumbered 
    11618 
    11619 > changechains #16/Du 4
    11620 
    11621 Chain IDs of 2 residues changed 
    11622 ['1', '3'] 
    11623 
    11624 > select #16/Ad
    11625 
    11626 18 atoms, 18 bonds, 3 residues, 1 model selected 
    11627 310 
    11628 311 
    11629 >1 
    11630 > renumber #16/Ad start 311
    11631 
    11632 3 residues renumbered 
    11633 
    11634 > changechains #16/Ad 4
    11635 
    11636 Chain IDs of 3 residues changed 
    11637 ['1', '7'] 
    11638 
    11639 > select #16/t
    11640 
    11641 50 atoms, 50 bonds, 7 residues, 1 model selected 
    11642 313 
    11643 314 
    11644 >1 
    11645 > renumber #16/t start 314
    11646 
    11647 7 residues renumbered 
    11648 
    11649 > changechains #16/t 4
    11650 
    11651 Chain IDs of 7 residues changed 
    11652 ['1', '32'] 
    11653 
    11654 > select #16/FU
    11655 
    11656 251 atoms, 254 bonds, 32 residues, 1 model selected 
    11657 320 
    11658 321 
    11659 >1 
    11660 > renumber #16/FU start 321
    11661 
    11662 32 residues renumbered 
    11663 
    11664 > changechains #16/FU 4
    11665 
    11666 Chain IDs of 32 residues changed 
    11667 ['1', '1'] 
    11668 
    11669 > select #16/By
    11670 
    11671 11 atoms, 10 bonds, 1 residue, 1 model selected 
    11672 352 
    11673 353 
    11674 >1 
    11675 > renumber #16/By start 353
    11676 
    11677 1 residues renumbered 
    11678 
    11679 > changechains #16/By 4
    11680 
    11681 Chain IDs of 1 residues changed 
    11682 ['1', '2'] 
    11683 
    11684 > select #16/AH
    11685 
    11686 13 atoms, 12 bonds, 2 residues, 1 model selected 
    11687 353 
    11688 354 
    11689 >1 
    11690 > renumber #16/AH start 354
    11691 
    11692 2 residues renumbered 
    11693 
    11694 > changechains #16/AH 4
    11695 
    11696 Chain IDs of 2 residues changed 
    11697 ['9', '18'] 
    11698 
    11699 > select #16/GV
    11700 
    11701 182 atoms, 182 bonds, 24 residues, 1 model selected 
    11702 355 
    11703 356 
    11704 >1 
    11705 > renumber #16/GV start 356
    11706 
    11707 24 residues renumbered 
    11708 
    11709 > changechains #16/GV 4
    11710 
    11711 Chain IDs of 24 residues changed 
    11712 ['1', '1'] 
    11713 
    11714 > select #16/Dq
    11715 
    11716 4 atoms, 3 bonds, 1 residue, 1 model selected 
    11717 379 
    11718 380 
    11719 >1 
    11720 > renumber #16/Dq start 380
    11721 
    11722 1 residues renumbered 
    11723 
    11724 > changechains #16/Dq 4
    11725 
    11726 Chain IDs of 1 residues changed 
    11727 ['1', '4'] 
    11728 
    11729 > select #16/GT
    11730 
    11731 28 atoms, 27 bonds, 4 residues, 1 model selected 
    11732 380 
    11733 381 
    11734 >1 
    11735 > renumber #16/GT start 381
    11736 
    11737 4 residues renumbered 
    11738 
    11739 > changechains #16/GT 4
    11740 
    11741 Chain IDs of 4 residues changed 
    11742 ['1', '2'] 
    11743 
    11744 > select #16/DS
    11745 
    11746 15 atoms, 15 bonds, 2 residues, 1 model selected 
    11747 384 
    11748 387 
    11749 >3 
    11750 > renumber #16/DS start 387
    11751 
    11752 2 residues renumbered 
    11753 
    11754 > changechains #16/DS 4
    11755 
    11756 Chain IDs of 2 residues changed 
    11757 ['1', '10'] 
    11758 
    11759 > select #16/Fp
    11760 
    11761 76 atoms, 78 bonds, 10 residues, 1 model selected 
    11762 388 
    11763 389 
    11764 >1 
    11765 > renumber #16/Fp start 389
    11766 
    11767 10 residues renumbered 
    11768 
    11769 > changechains #16/Fp 4
    11770 
    11771 Chain IDs of 10 residues changed 
    11772 ['1', '5'] 
    11773 
    11774 > select #16/7
    11775 
    11776 37 atoms, 37 bonds, 5 residues, 1 model selected 
    11777 398 
    11778 399 
    11779 >1 
    11780 > renumber #16/7 start 399
    11781 
    11782 5 residues renumbered 
    11783 
    11784 > changechains #16/7 4
    11785 
    11786 Chain IDs of 5 residues changed 
    11787 ['1', '2'] 
    11788 
    11789 > select #16/8
    11790 
    11791 16 atoms, 15 bonds, 2 residues, 1 model selected 
    11792 403 
    11793 404 
    11794 >1 
    11795 > renumber #16/8 start 404
    11796 
    11797 2 residues renumbered 
    11798 
    11799 > changechains #16/8 4
    11800 
    11801 Chain IDs of 2 residues changed 
    11802 ['1', '20'] 
    11803 
    11804 > select #16/FJ
    11805 
    11806 149 atoms, 150 bonds, 20 residues, 1 model selected 
    11807 405 
    11808 407 
    11809 >2 
    11810 > renumber #16/FJ start 407
    11811 
    11812 20 residues renumbered 
    11813 
    11814 > changechains #16/FJ 4
    11815 
    11816 Chain IDs of 20 residues changed 
    11817 ['1', '7'] 
    11818 
    11819 > select #16/Fu
    11820 
    11821 53 atoms, 53 bonds, 7 residues, 1 model selected 
    11822 426 
    11823 426 
    11824 >0 
    11825 
    11826 > delete #16/Fu:1
    11827 
    11828 > renumber #16/Fu start 427
    11829 
    11830 6 residues renumbered 
    11831 
    11832 > changechains #16/Fu 4
    11833 
    11834 Chain IDs of 6 residues changed 
    11835 ['1', '1'] 
    11836 
    11837 > select #16/D6
    11838 
    11839 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11840 432 
    11841 469 
    11842 >37 
    11843 > renumber #16/D6 start 469
    11844 
    11845 1 residues renumbered 
    11846 
    11847 > changechains #16/D6 4
    11848 
    11849 Chain IDs of 1 residues changed 
    11850 ['1', '2'] 
    11851 
    11852 > select #16/Dl
    11853 
    11854 8 atoms, 7 bonds, 2 residues, 1 model selected 
    11855 469 
    11856 470 
    11857 >1 
    11858 > renumber #16/Dl start 470
    11859 
    11860 2 residues renumbered 
    11861 
    11862 > changechains #16/Dl 4
    11863 
    11864 Chain IDs of 2 residues changed 
    11865 ['1', '1'] 
    11866 
    11867 > select #16/Dk
    11868 
    11869 Nothing selected 
    11870 471 
    11871 472 
    11872 >1 
    11873 > renumber #16/Dk start 472
    11874 
    11875 Traceback (most recent call last): 
    11876 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    11877 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    11878 line 188, in   
    11879 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    11880 File
    11881 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11882 packages/chimerax/core/commands/run.py", line 49, in run 
    11883 results = command.run(text, log=log, return_json=return_json) 
    11884 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    11885 File
    11886 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11887 packages/chimerax/core/commands/cli.py", line 3213, in run 
    11888 result = ci.function(session, **kw_args) 
    11889 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    11890 File
    11891 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11892 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    11893 raise UserError("No residues specified") 
    11894 chimerax.core.errors.UserError: No residues specified 
    11895  
    11896 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    11897 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    11898 
    11899 > hide #!15 models
    11900 
    11901 > show #!15 models
    11902 
    11903 > select #15/Dk
    11904 
    11905 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11906 
    11907 > show sel atoms
    11908 
    11909 > view #15/Dk
    11910 
    11911 > show sel atoms
    11912 
    11913 > style sel stick
    11914 
    11915 Changed 8 atom styles 
    11916 
    11917 > view #7:468
    11918 
    11919 > select #15/Dk
    11920 
    11921 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11922 
    11923 > style sel sphere
    11924 
    11925 Changed 8 atom styles 
    11926 
    11927 > style sel sphere
    11928 
    11929 Changed 8 atom styles 
    11930 
    11931 > style sel stick
    11932 
    11933 Changed 8 atom styles 
    11934 
    11935 > select #15/Dk
    11936 
    11937 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11938 
    11939 > select #15/DK
    11940 
    11941 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11942 
    11943 > show sel atoms
    11944 
    11945 > style sel stick
    11946 
    11947 Changed 9 atom styles 
    11948 
    11949 > close #16
    11950 
    11951 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    11952 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    11953 > #15 alignmentsMod1Mod.txt
    11954 
    11955 ['1', '8'] 
    11956 ['1', '8'] 
    11957 ['11'] 
    11958 ['1', '1'] 
    11959 ['11'] 
    11960 ['1', '1'] 
    11961 ['1', '3'] 
    11962 ['1', '3'] 
    11963 ['11'] 
    11964 ['1', '1'] 
    11965 ['1', '4'] 
    11966 ['1', '4'] 
    11967 ['1', '15'] 
    11968 ['1', '15'] 
    11969 ['11'] 
    11970 ['1', '1'] 
    11971 ['1', '9'] 
    11972 ['1', '9'] 
    11973 ['1', '4'] 
    11974 ['1', '4'] 
    11975 ['1', '28'] 
    11976 ['1', '28'] 
    11977 ['1', '15'] 
    11978 ['1', '15'] 
    11979 ['7', '15'] 
    11980 ['7', '15'] 
    11981 ['2', '44'] 
    11982 ['2', '44'] 
    11983 ['1', '7'] 
    11984 ['1', '7'] 
    11985 ['1', '8'] 
    11986 ['1', '8'] 
    11987 ['1', '13'] 
    11988 ['1', '13'] 
    11989 ['11'] 
    11990 ['1', '1'] 
    11991 ['1', '31'] 
    11992 ['1', '31'] 
    11993 ['12'] 
    11994 ['1', '2'] 
    11995 ['6', '22'] 
    11996 ['6', '22'] 
    11997 ['5', '21'] 
    11998 ['5', '21'] 
    11999 ['3', '140'] 
    12000 ['3', '140'] 
    12001 ['1', '3'] 
    12002 ['1', '3'] 
    12003 ['1', '8'] 
    12004 ['1', '8'] 
    12005 ['2', '18'] 
    12006 ['2', '18'] 
    12007 ['1', '7'] 
    12008 ['1', '7'] 
    12009 ['7', '12'] 
    12010 ['7', '12'] 
    12011 ['1', '10'] 
    12012 ['1', '10'] 
    12013 ['12'] 
    12014 ['1', '2'] 
    12015 ['1', '10'] 
    12016 ['1', '10'] 
    12017 ['4', '63'] 
    12018 ['4', '63'] 
    12019 ['9', '11'] 
    12020 ['9', '11'] 
    12021 ['11'] 
    12022 ['1', '1'] 
    12023 ['1', '5'] 
    12024 ['1', '5'] 
    12025 ['5', '33'] 
    12026 ['5', '33'] 
    12027 ['1', '4'] 
    12028 ['1', '4'] 
    12029 ['1', '74'] 
    12030 ['1', '74'] 
    12031 ['3', '18'] 
    12032 ['3', '18'] 
    12033 ['2', '22'] 
    12034 ['2', '22'] 
    12035 ['1', '4'] 
    12036 ['1', '4'] 
    12037 ['1', '3'] 
    12038 ['1', '3'] 
    12039 ['2', '81'] 
    12040 ['2', '81'] 
    12041 ['1', '8'] 
    12042 ['1', '8'] 
    12043 ['1', '5'] 
    12044 ['1', '5'] 
    12045 ['14', '47'] 
    12046 ['14', '47'] 
    12047 ['1', '5'] 
    12048 ['1', '5'] 
    12049 ['1', '3'] 
    12050 ['1', '3'] 
    12051 ['11'] 
    12052 ['1', '1'] 
    12053 ['1', '7'] 
    12054 ['1', '7'] 
    12055 ['1', '14'] 
    12056 ['1', '14'] 
    12057 ['1', '5'] 
    12058 ['1', '5'] 
    12059 ['1', '4'] 
    12060 ['1', '4'] 
    12061 ['1', '7'] 
    12062 ['1', '7'] 
    12063 ['1', '14'] 
    12064 ['1', '14'] 
    12065 ['1', '25'] 
    12066 ['1', '25'] 
    12067 ['1', '20'] 
    12068 ['1', '20'] 
    12069 ['1', '8'] 
    12070 ['1', '8'] 
    12071 ['11'] 
    12072 ['1', '1'] 
    12073 ['12'] 
    12074 ['1', '2'] 
    12075 ['12'] 
    12076 ['1', '2'] 
    12077 ['1', '18'] 
    12078 ['1', '18'] 
    12079 ['1', '70'] 
    12080 ['1', '70'] 
    12081 ['12'] 
    12082 ['1', '2'] 
    12083 ['12'] 
    12084 ['1', '2'] 
    12085 ['1', '12'] 
    12086 ['1', '12'] 
    12087 ['1', '5'] 
    12088 ['1', '5'] 
    12089 ['1', '14'] 
    12090 ['1', '14'] 
    12091 ['1', '3'] 
    12092 ['1', '3'] 
    12093 ['12'] 
    12094 ['1', '2'] 
    12095 ['1', '3'] 
    12096 ['1', '3'] 
    12097 ['1', '7'] 
    12098 ['1', '7'] 
    12099 ['1', '32'] 
    12100 ['1', '32'] 
    12101 ['11'] 
    12102 ['1', '1'] 
    12103 ['12'] 
    12104 ['1', '2'] 
    12105 ['9', '18'] 
    12106 ['9', '18'] 
    12107 ['11'] 
    12108 ['1', '1'] 
    12109 ['1', '4'] 
    12110 ['1', '4'] 
    12111 ['12'] 
    12112 ['1', '2'] 
    12113 ['1', '10'] 
    12114 ['1', '10'] 
    12115 ['1', '5'] 
    12116 ['1', '5'] 
    12117 ['12'] 
    12118 ['1', '2'] 
    12119 ['1', '20'] 
    12120 ['1', '20'] 
    12121 ['1', '7'] 
    12122 ['1', '7'] 
    12123 ['11'] 
    12124 ['1', '1'] 
    12125 ['12'] 
    12126 ['1', '2'] 
    12127 ['11'] 
    12128 ['1', '1'] 
    12129 ['11'] 
    12130 ['1', '1'] 
    12131 ['12'] 
    12132 ['1', '2'] 
    12133 ['1', '3'] 
    12134 ['1', '3'] 
    12135 ['11', '32'] 
    12136 ['11', '32'] 
    12137 ['1', '12'] 
    12138 ['1', '12'] 
    12139 ['1', '3'] 
    12140 ['1', '3'] 
    12141 ['2', '15'] 
    12142 ['2', '15'] 
    12143 ['11'] 
    12144 ['1', '1'] 
    12145 ['11'] 
    12146 ['1', '1'] 
    12147 ['1', '153'] 
    12148 ['1', '153'] 
    12149 ['11'] 
    12150 ['1', '1'] 
    12151 ['1', '39'] 
    12152 ['1', '39'] 
    12153 ['1', '27'] 
    12154 ['1', '27'] 
    12155 ['1', '37'] 
    12156 ['1', '37'] 
    12157 ['12'] 
    12158 ['1', '2'] 
    12159 ['11'] 
    12160 ['1', '1'] 
    12161 ['11'] 
    12162 ['1', '1'] 
    12163 ['1', '56'] 
    12164 ['1', '56'] 
    12165 ['1', '9'] 
    12166 ['1', '9'] 
    12167 ['1', '4'] 
    12168 ['1', '4'] 
    12169 ['12'] 
    12170 ['1', '2'] 
    12171 ['1', '3'] 
    12172 ['1', '3'] 
    12173 ['12'] 
    12174 ['1', '2'] 
    12175 ['11'] 
    12176 ['1', '1'] 
    12177 ['1', '10'] 
    12178 ['1', '10'] 
    12179 ['1', '4'] 
    12180 ['1', '4'] 
    12181 ['11'] 
    12182 ['1', '1'] 
    12183 ['12'] 
    12184 ['1', '2'] 
    12185 ['1', '30'] 
    12186 ['1', '30'] 
    12187 ['3', '45'] 
    12188 ['3', '45'] 
    12189 ['1', '9'] 
    12190 ['1', '9'] 
    12191 ['2', '4'] 
    12192 ['2', '4'] 
    12193 ['12'] 
    12194 ['1', '2'] 
    12195 ['1', '59'] 
    12196 ['1', '59'] 
    12197 ['1', '13'] 
    12198 ['1', '13'] 
    12199 ['1', '34'] 
    12200 ['1', '34'] 
    12201 ['1', '5'] 
    12202 ['1', '5'] 
    12203 ['3', '25'] 
    12204 ['3', '25'] 
    12205 ['1', '4'] 
    12206 ['1', '4'] 
    12207 ['1', '3'] 
    12208 ['1', '3'] 
    12209 ['6', '20'] 
    12210 ['6', '20'] 
    12211 ['1', '11'] 
    12212 ['1', '11'] 
    12213 ['3', '39'] 
    12214 ['3', '39'] 
    12215 ['1', '27'] 
    12216 ['1', '27'] 
    12217 ['1', '21'] 
    12218 ['1', '21'] 
    12219 ['11'] 
    12220 ['1', '1'] 
    12221 ['1', '4'] 
    12222 ['1', '4'] 
    12223 ['2', '33'] 
    12224 ['2', '33'] 
    12225 ['11'] 
    12226 ['1', '1'] 
    12227 ['11'] 
    12228 ['1', '1'] 
    12229 ['12'] 
    12230 ['1', '2'] 
    12231 ['11'] 
    12232 ['1', '1'] 
    12233 ['11'] 
    12234 ['1', '1'] 
    12235 ['1', '8'] 
    12236 ['1', '8'] 
    12237 LtaP35.1590.mRNA_A 
    12238 LtaP35.1450.mRNA_A 
    12239 LtaP07.0060.mRNA_A 
    12240 LtaP32.3800.mRNA_A 
    12241 LtaP13.0770.mRNA_A 
    12242 sp|P14548.2|CYB_LEITA_A 
    12243 LtaP35.0210.mRNA_A 
    12244 GET91263.1_A 
    12245 LtaP35.0250.mRNA_A 
    12246 GET89654.1_A 
    12247 
    12248 > combine #15 close false name renamedAndRenumberedModel
    12249 
    12250 Renumering chain LtaP35.1590.mRNA_A 
    12251 ['1', '8'] 
    12252 
    12253 > select #16/GC
    12254 
    12255 66 atoms, 66 bonds, 8 residues, 1 model selected 
    12256 0 
    12257 17 
    12258 >17 
    12259 > renumber #16/GC start 17
    12260 
    12261 8 residues renumbered 
    12262 ['1', '1'] 
    12263 
    12264 > select #16/Bd
    12265 
    12266 4 atoms, 3 bonds, 1 residue, 1 model selected 
    12267 24 
    12268 25 
    12269 >1 
    12270 > renumber #16/Bd start 25
    12271 
    12272 1 residues renumbered 
    12273 
    12274 > changechains #16/Bd GC
    12275 
    12276 Chain IDs of 1 residues changed 
    12277 ['1', '1'] 
    12278 
    12279 > select #16/Ca
    12280 
    12281 4 atoms, 3 bonds, 1 residue, 1 model selected 
    12282 25 
    12283 26 
    12284 >1 
    12285 > renumber #16/Ca start 26
    12286 
    12287 1 residues renumbered 
    12288 
    12289 > changechains #16/Ca GC
    12290 
    12291 Chain IDs of 1 residues changed 
    12292 ['1', '3'] 
    12293 
    12294 > select #16/AP
    12295 
    12296 19 atoms, 19 bonds, 3 residues, 1 model selected 
    12297 26 
    12298 27 
    12299 >1 
    12300 > renumber #16/AP start 27
    12301 
    12302 3 residues renumbered 
    12303 
    12304 > changechains #16/AP GC
    12305 
    12306 Chain IDs of 3 residues changed 
    12307 ['1', '1'] 
    12308 
    12309 > select #16/BN
    12310 
    12311 6 atoms, 5 bonds, 1 residue, 1 model selected 
    12312 29 
    12313 30 
    12314 >1 
    12315 > renumber #16/BN start 30
    12316 
    12317 1 residues renumbered 
    12318 
    12319 > changechains #16/BN GC
    12320 
    12321 Chain IDs of 1 residues changed 
    12322 ['1', '4'] 
    12323 
    12324 > select #16/FF
    12325 
    12326 32 atoms, 32 bonds, 4 residues, 1 model selected 
    12327 30 
    12328 31 
    12329 >1 
    12330 > renumber #16/FF start 31
    12331 
    12332 4 residues renumbered 
    12333 
    12334 > changechains #16/FF GC
    12335 
    12336 Chain IDs of 4 residues changed 
    12337 ['1', '15'] 
    12338 
    12339 > select #16/Fo
    12340 
    12341 103 atoms, 106 bonds, 15 residues, 1 model selected 
    12342 34 
    12343 35 
    12344 >1 
    12345 > renumber #16/Fo start 35
    12346 
    12347 15 residues renumbered 
    12348 
    12349 > changechains #16/Fo GC
    12350 
    12351 Chain IDs of 15 residues changed 
    12352 ['1', '1'] 
    12353 
    12354 > select #16/Cy
    12355 
    12356 8 atoms, 7 bonds, 1 residue, 1 model selected 
    12357 49 
    12358 50 
    12359 >1 
    12360 > renumber #16/Cy start 50
    12361 
    12362 1 residues renumbered 
    12363 
    12364 > changechains #16/Cy GC
    12365 
    12366 Chain IDs of 1 residues changed 
    12367 ['1', '9'] 
    12368 
    12369 > select #16/EY
    12370 
    12371 66 atoms, 67 bonds, 9 residues, 1 model selected 
    12372 50 
    12373 51 
    12374 >1 
    12375 > renumber #16/EY start 51
    12376 
    12377 9 residues renumbered 
    12378 
    12379 > changechains #16/EY GC
    12380 
    12381 Chain IDs of 9 residues changed 
    12382 ['1', '4'] 
    12383 
    12384 > select #16/FV
    12385 
    12386 24 atoms, 23 bonds, 4 residues, 1 model selected 
    12387 59 
    12388 60 
    12389 >1 
    12390 > renumber #16/FV start 60
    12391 
    12392 4 residues renumbered 
    12393 
    12394 > changechains #16/FV GC
    12395 
    12396 Chain IDs of 4 residues changed 
    12397 ['1', '28'] 
    12398 
    12399 > select #16/Ey
    12400 
    12401 210 atoms, 213 bonds, 28 residues, 1 model selected 
    12402 63 
    12403 64 
    12404 >1 
    12405 > renumber #16/Ey start 64
    12406 
    12407 28 residues renumbered 
    12408 
    12409 > changechains #16/Ey GC
    12410 
    12411 Chain IDs of 28 residues changed 
    12412 ['1', '15'] 
    12413 
    12414 > select #16/K
    12415 
    12416 102 atoms, 102 bonds, 15 residues, 1 model selected 
    12417 91 
    12418 92 
    12419 >1 
    12420 > renumber #16/K start 92
    12421 
    12422 15 residues renumbered 
    12423 
    12424 > changechains #16/K GC
    12425 
    12426 Chain IDs of 15 residues changed 
    12427 ['7', '15'] 
    12428 
    12429 > select #16/L
    12430 
    12431 184 atoms, 187 bonds, 22 residues, 1 model selected 
    12432 106 
    12433 107 
    12434 >1 
    12435 > renumber #16/L start 107
    12436 
    12437 22 residues renumbered 
    12438 
    12439 > changechains #16/L GC
    12440 
    12441 Chain IDs of 22 residues changed 
    12442 ['2', '44'] 
    12443 
    12444 > select #16/Ee
    12445 
    12446 355 atoms, 363 bonds, 44 residues, 1 model selected 
    12447 128 
    12448 129 
    12449 >1 
    12450 > renumber #16/Ee start 129
    12451 
    12452 44 residues renumbered 
    12453 
    12454 > changechains #16/Ee GC
    12455 
    12456 Chain IDs of 44 residues changed 
    12457 Renumering chain LtaP35.1450.mRNA_A 
    12458 ['1', '7'] 
    12459 
    12460 > select #16/Gc
    12461 
    12462 52 atoms, 52 bonds, 7 residues, 1 model selected 
    12463 0 
    12464 2 
    12465 >2 
    12466 > renumber #16/Gc start 2
    12467 
    12468 7 residues renumbered 
    12469 ['1', '8'] 
    12470 
    12471 > select #16/Ex
    12472 
    12473 55 atoms, 56 bonds, 8 residues, 1 model selected 
    12474 8 
    12475 10 
    12476 >2 
    12477 > renumber #16/Ex start 10
    12478 
    12479 8 residues renumbered 
    12480 
    12481 > changechains #16/Ex Gc
    12482 
    12483 Chain IDs of 8 residues changed 
    12484 ['1', '13'] 
    12485 
    12486 > select #16/E6
    12487 
    12488 98 atoms, 100 bonds, 13 residues, 1 model selected 
    12489 17 
    12490 18 
    12491 >1 
    12492 > renumber #16/E6 start 18
    12493 
    12494 13 residues renumbered 
    12495 
    12496 > changechains #16/E6 Gc
    12497 
    12498 Chain IDs of 13 residues changed 
    12499 ['1', '1'] 
    12500 
    12501 > select #16/Ai
    12502 
    12503 11 atoms, 10 bonds, 1 residue, 1 model selected 
    12504 30 
    12505 31 
    12506 >1 
    12507 > renumber #16/Ai start 31
    12508 
    12509 1 residues renumbered 
    12510 
    12511 > changechains #16/Ai Gc
    12512 
    12513 Chain IDs of 1 residues changed 
    12514 ['1', '31'] 
    12515 
    12516 > select #16/0
    12517 
    12518 233 atoms, 235 bonds, 31 residues, 1 model selected 
    12519 31 
    12520 32 
    12521 >1 
    12522 > renumber #16/0 start 32
    12523 
    12524 31 residues renumbered 
    12525 
    12526 > changechains #16/0 Gc
    12527 
    12528 Chain IDs of 31 residues changed 
    12529 ['1', '2'] 
    12530 
    12531 > select #16/U
    12532 
    12533 11 atoms, 10 bonds, 2 residues, 1 model selected 
    12534 62 
    12535 63 
    12536 >1 
    12537 > renumber #16/U start 63
    12538 
    12539 2 residues renumbered 
    12540 
    12541 > changechains #16/U Gc
    12542 
    12543 Chain IDs of 2 residues changed 
    12544 ['6', '22'] 
    12545 
    12546 > select #16/d
    12547 
    12548 176 atoms, 182 bonds, 22 residues, 1 model selected 
    12549 64 
    12550 65 
    12551 >1 
    12552 > renumber #16/d start 65
    12553 
    12554 22 residues renumbered 
    12555 
    12556 > changechains #16/d Gc
    12557 
    12558 Chain IDs of 22 residues changed 
    12559 ['5', '21'] 
    12560 
    12561 > select #16/EV
    12562 
    12563 161 atoms, 160 bonds, 21 residues, 1 model selected 
    12564 86 
    12565 87 
    12566 >1 
    12567 > renumber #16/EV start 87
    12568 
    12569 21 residues renumbered 
    12570 
    12571 > changechains #16/EV Gc
    12572 
    12573 Chain IDs of 21 residues changed 
    12574 
    12575 > delete #16/Ew:132
    12576 
    12577 > renumber #16/Ew:133-9999999 start 132
    12578 
    12579 11 residues renumbered 
    12580 ['3', '139'] 
    12581 
    12582 > select #16/Ew
    12583 
    12584 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    12585 107 
    12586 108 
    12587 >1 
    12588 > renumber #16/Ew start 108
    12589 
    12590 142 residues renumbered 
    12591 
    12592 > changechains #16/Ew Gc
    12593 
    12594 Chain IDs of 142 residues changed 
    12595 ['1', '3'] 
    12596 
    12597 > select #16/GO
    12598 
    12599 18 atoms, 18 bonds, 3 residues, 1 model selected 
    12600 249 
    12601 250 
    12602 >1 
    12603 > renumber #16/GO start 250
    12604 
    12605 3 residues renumbered 
    12606 
    12607 > changechains #16/GO Gc
    12608 
    12609 Chain IDs of 3 residues changed 
    12610 ['1', '8'] 
    12611 
    12612 > select #16/Z
    12613 
    12614 69 atoms, 71 bonds, 8 residues, 1 model selected 
    12615 252 
    12616 253 
    12617 >1 
    12618 > renumber #16/Z start 253
    12619 
    12620 8 residues renumbered 
    12621 
    12622 > changechains #16/Z Gc
    12623 
    12624 Chain IDs of 8 residues changed 
    12625 ['2', '18'] 
    12626 
    12627 > select #16/ES
    12628 
    12629 163 atoms, 164 bonds, 18 residues, 1 model selected 
    12630 260 
    12631 262 
    12632 >2 
    12633 > renumber #16/ES start 262
    12634 
    12635 18 residues renumbered 
    12636 
    12637 > changechains #16/ES Gc
    12638 
    12639 Chain IDs of 18 residues changed 
    12640 ['1', '7'] 
    12641 
    12642 > select #16/Fc
    12643 
    12644 40 atoms, 41 bonds, 7 residues, 1 model selected 
    12645 279 
    12646 282 
    12647 >3 
    12648 > renumber #16/Fc start 282
    12649 
    12650 7 residues renumbered 
    12651 
    12652 > changechains #16/Fc Gc
    12653 
    12654 Chain IDs of 7 residues changed 
    12655 ['7', '12'] 
    12656 
    12657 > select #16/Fa
    12658 
    12659 177 atoms, 179 bonds, 24 residues, 1 model selected 
    12660 288 
    12661 289 
    12662 >1 
    12663 > renumber #16/Fa start 289
    12664 
    12665 24 residues renumbered 
    12666 
    12667 > changechains #16/Fa Gc
    12668 
    12669 Chain IDs of 24 residues changed 
    12670 ['1', '10'] 
    12671 
    12672 > select #16/2
    12673 
    12674 81 atoms, 83 bonds, 10 residues, 1 model selected 
    12675 312 
    12676 314 
    12677 >2 
    12678 > renumber #16/2 start 314
    12679 
    12680 10 residues renumbered 
    12681 
    12682 > changechains #16/2 Gc
    12683 
    12684 Chain IDs of 10 residues changed 
    12685 ['1', '2'] 
    12686 
    12687 > select #16/E
    12688 
    12689 16 atoms, 16 bonds, 2 residues, 1 model selected 
    12690 323 
    12691 326 
    12692 >3 
    12693 > renumber #16/E start 326
    12694 
    12695 2 residues renumbered 
    12696 
    12697 > changechains #16/E Gc
    12698 
    12699 Chain IDs of 2 residues changed 
    12700 ['1', '10'] 
    12701 
    12702 > select #16/Ff
    12703 
    12704 75 atoms, 76 bonds, 10 residues, 1 model selected 
    12705 327 
    12706 328 
    12707 >1 
    12708 > renumber #16/Ff start 328
    12709 
    12710 10 residues renumbered 
    12711 
    12712 > changechains #16/Ff Gc
    12713 
    12714 Chain IDs of 10 residues changed 
    12715 ['4', '63'] 
    12716 
    12717 > select #16/E2
    12718 
    12719 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    12720 337 
    12721 338 
    12722 >1 
    12723 > renumber #16/E2 start 338
    12724 
    12725 132 residues renumbered 
    12726 
    12727 > changechains #16/E2 Gc
    12728 
    12729 Chain IDs of 132 residues changed 
    12730 ['9', '11'] 
    12731 
    12732 > select #16/W
    12733 
    12734 182 atoms, 189 bonds, 20 residues, 1 model selected 
    12735 469 
    12736 470 
    12737 >1 
    12738 > renumber #16/W start 470
    12739 
    12740 20 residues renumbered 
    12741 
    12742 > changechains #16/W Gc
    12743 
    12744 Chain IDs of 20 residues changed 
    12745 ['1', '1'] 
    12746 
    12747 > select #16/BM
    12748 
    12749 7 atoms, 6 bonds, 1 residue, 1 model selected 
    12750 489 
    12751 490 
    12752 >1 
    12753 > renumber #16/BM start 490
    12754 
    12755 1 residues renumbered 
    12756 
    12757 > changechains #16/BM Gc
    12758 
    12759 Chain IDs of 1 residues changed 
    12760 Renumering chain LtaP07.0060.mRNA_A 
    12761 ['1', '5'] 
    12762 
    12763 > select #16/A
    12764 
    12765 32 atoms, 33 bonds, 5 residues, 1 model selected 
    12766 0 
    12767 5 
    12768 >5 
    12769 > renumber #16/A start 5
    12770 
    12771 5 residues renumbered 
    12772 ['5', '33'] 
    12773 
    12774 > select #16/Fd
    12775 
    12776 314 atoms, 324 bonds, 36 residues, 1 model selected 
    12777 9 
    12778 10 
    12779 >1 
    12780 > renumber #16/Fd start 10
    12781 
    12782 36 residues renumbered 
    12783 
    12784 > changechains #16/Fd A
    12785 
    12786 Chain IDs of 36 residues changed 
    12787 ['1', '4'] 
    12788 
    12789 > select #16/Ef
    12790 
    12791 24 atoms, 23 bonds, 4 residues, 1 model selected 
    12792 45 
    12793 46 
    12794 >1 
    12795 > renumber #16/Ef start 46
    12796 
    12797 4 residues renumbered 
    12798 
    12799 > changechains #16/Ef A
    12800 
    12801 Chain IDs of 4 residues changed 
    12802 ['1', '74'] 
    12803 
    12804 > select #16/Eg
    12805 
    12806 577 atoms, 589 bonds, 74 residues, 1 model selected 
    12807 49 
    12808 50 
    12809 >1 
    12810 > renumber #16/Eg start 50
    12811 
    12812 74 residues renumbered 
    12813 
    12814 > changechains #16/Eg A
    12815 
    12816 Chain IDs of 74 residues changed 
    12817 ['3', '18'] 
    12818 
    12819 > select #16/j
    12820 
    12821 160 atoms, 162 bonds, 22 residues, 1 model selected 
    12822 123 
    12823 124 
    12824 >1 
    12825 > renumber #16/j start 124
    12826 
    12827 22 residues renumbered 
    12828 
    12829 > changechains #16/j A
    12830 
    12831 Chain IDs of 22 residues changed 
    12832 
    12833 > renumber #16/Ei:7-9999999 start 8
    12834 
    12835 19 residues renumbered 
    12836 
    12837 > ~bond #16/Ei:6@C #16/Ei:8@N
    12838 
    12839 ['2', '21'] 
    12840 
    12841 > select #16/Ei
    12842 
    12843 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    12844 145 
    12845 145 
    12846 >0 
    12847 
    12848 > delete #16/Ei:1
    12849 
    12850 > renumber #16/Ei start 146
    12851 
    12852 24 residues renumbered 
    12853 
    12854 > changechains #16/Ei A
    12855 
    12856 Chain IDs of 24 residues changed 
    12857 ['1', '4'] 
    12858 
    12859 > select #16/Bi
    12860 
    12861 23 atoms, 22 bonds, 4 residues, 1 model selected 
    12862 170 
    12863 168 
    12864 >-2 
    12865 
    12866 > delete #16/Bi:3
    12867 
    12868 > delete #16/Bi:2
    12869 
    12870 > delete #16/Bi:1
    12871 
    12872 > renumber #16/Bi start 171
    12873 
    12874 1 residues renumbered 
    12875 
    12876 > changechains #16/Bi A
    12877 
    12878 Chain IDs of 1 residues changed 
    12879 ['1', '3'] 
    12880 
    12881 > select #16/GM
    12882 
    12883 21 atoms, 20 bonds, 3 residues, 1 model selected 
    12884 171 
    12885 171 
    12886 >0 
    12887 
    12888 > delete #16/GM:1
    12889 
    12890 > renumber #16/GM start 172
    12891 
    12892 2 residues renumbered 
    12893 
    12894 > changechains #16/GM A
    12895 
    12896 Chain IDs of 2 residues changed 
    12897 ['2', '81'] 
    12898 
    12899 > select #16/E8
    12900 
    12901 695 atoms, 717 bonds, 86 residues, 1 model selected 
    12902 173 
    12903 174 
    12904 >1 
    12905 > renumber #16/E8 start 174
    12906 
    12907 86 residues renumbered 
    12908 
    12909 > changechains #16/E8 A
    12910 
    12911 Chain IDs of 86 residues changed 
    12912 Renumering chain LtaP32.3800.mRNA_A 
    12913 ['1', '8'] 
    12914 
    12915 > select #16/N
    12916 
    12917 66 atoms, 69 bonds, 8 residues, 1 model selected 
    12918 0 
    12919 34 
    12920 >34 
    12921 > renumber #16/N start 34
    12922 
    12923 8 residues renumbered 
    12924 ['1', '5'] 
    12925 
    12926 > select #16/GZ
    12927 
    12928 35 atoms, 34 bonds, 5 residues, 1 model selected 
    12929 41 
    12930 42 
    12931 >1 
    12932 > renumber #16/GZ start 42
    12933 
    12934 5 residues renumbered 
    12935 
    12936 > changechains #16/GZ N
    12937 
    12938 Chain IDs of 5 residues changed 
    12939 ['14', '47'] 
    12940 
    12941 > select #16/FT
    12942 
    12943 810 atoms, 833 bonds, 101 residues, 1 model selected 
    12944 46 
    12945 47 
    12946 >1 
    12947 > renumber #16/FT start 47
    12948 
    12949 101 residues renumbered 
    12950 
    12951 > changechains #16/FT N
    12952 
    12953 Chain IDs of 101 residues changed 
    12954 Renumering chain LtaP13.0770.mRNA_A 
    12955 ['1', '5'] 
    12956 
    12957 > select #16/4
    12958 
    12959 50 atoms, 51 bonds, 5 residues, 1 model selected 
    12960 0 
    12961 25 
    12962 >25 
    12963 > renumber #16/4 start 25
    12964 
    12965 5 residues renumbered 
    12966 ['1', '3'] 
    12967 
    12968 > select #16/D
    12969 
    12970 20 atoms, 20 bonds, 3 residues, 1 model selected 
    12971 29 
    12972 30 
    12973 >1 
    12974 > renumber #16/D start 30
    12975 
    12976 3 residues renumbered 
    12977 
    12978 > changechains #16/D 4
    12979 
    12980 Chain IDs of 3 residues changed 
    12981 ['1', '1'] 
    12982 
    12983 > select #16/CN
    12984 
    12985 6 atoms, 5 bonds, 1 residue, 1 model selected 
    12986 32 
    12987 33 
    12988 >1 
    12989 > renumber #16/CN start 33
    12990 
    12991 1 residues renumbered 
    12992 
    12993 > changechains #16/CN 4
    12994 
    12995 Chain IDs of 1 residues changed 
    12996 ['1', '7'] 
    12997 
    12998 > select #16/FG
    12999 
    13000 48 atoms, 48 bonds, 7 residues, 1 model selected 
    13001 33 
    13002 34 
    13003 >1 
    13004 > renumber #16/FG start 34
    13005 
    13006 7 residues renumbered 
    13007 
    13008 > changechains #16/FG 4
    13009 
    13010 Chain IDs of 7 residues changed 
    13011 ['1', '14'] 
    13012 
    13013 > select #16/GH
    13014 
    13015 92 atoms, 92 bonds, 14 residues, 1 model selected 
    13016 40 
    13017 57 
    13018 >17 
    13019 > renumber #16/GH start 57
    13020 
    13021 14 residues renumbered 
    13022 
    13023 > changechains #16/GH 4
    13024 
    13025 Chain IDs of 14 residues changed 
    13026 ['1', '5'] 
    13027 
    13028 > select #16/GW
    13029 
    13030 46 atoms, 46 bonds, 5 residues, 1 model selected 
    13031 70 
    13032 71 
    13033 >1 
    13034 > renumber #16/GW start 71
    13035 
    13036 5 residues renumbered 
    13037 
    13038 > changechains #16/GW 4
    13039 
    13040 Chain IDs of 5 residues changed 
    13041 ['1', '4'] 
    13042 
    13043 > select #16/Fj
    13044 
    13045 24 atoms, 23 bonds, 4 residues, 1 model selected 
    13046 75 
    13047 76 
    13048 >1 
    13049 > renumber #16/Fj start 76
    13050 
    13051 4 residues renumbered 
    13052 
    13053 > changechains #16/Fj 4
    13054 
    13055 Chain IDs of 4 residues changed 
    13056 ['1', '7'] 
    13057 
    13058 > select #16/E4
    13059 
    13060 48 atoms, 48 bonds, 7 residues, 1 model selected 
    13061 79 
    13062 80 
    13063 >1 
    13064 > renumber #16/E4 start 80
    13065 
    13066 7 residues renumbered 
    13067 
    13068 > changechains #16/E4 4
    13069 
    13070 Chain IDs of 7 residues changed 
    13071 ['1', '14'] 
    13072 
    13073 > select #16/Er
    13074 
    13075 99 atoms, 102 bonds, 14 residues, 1 model selected 
    13076 86 
    13077 87 
    13078 >1 
    13079 > renumber #16/Er start 87
    13080 
    13081 14 residues renumbered 
    13082 
    13083 > changechains #16/Er 4
    13084 
    13085 Chain IDs of 14 residues changed 
    13086 ['1', '25'] 
    13087 
    13088 > select #16/ER
    13089 
    13090 208 atoms, 211 bonds, 25 residues, 1 model selected 
    13091 100 
    13092 101 
    13093 >1 
    13094 > renumber #16/ER start 101
    13095 
    13096 25 residues renumbered 
    13097 
    13098 > changechains #16/ER 4
    13099 
    13100 Chain IDs of 25 residues changed 
    13101 ['1', '20'] 
    13102 
    13103 > select #16/Fz
    13104 
    13105 146 atoms, 147 bonds, 20 residues, 1 model selected 
    13106 125 
    13107 124 
    13108 >-1 
    13109 
    13110 > delete #16/Fz:2
    13111 
    13112 > delete #16/Fz:1
    13113 
    13114 > renumber #16/Fz start 126
    13115 
    13116 18 residues renumbered 
    13117 
    13118 > changechains #16/Fz 4
    13119 
    13120 Chain IDs of 18 residues changed 
    13121 ['1', '8'] 
    13122 
    13123 > select #16/p
    13124 
    13125 62 atoms, 62 bonds, 8 residues, 1 model selected 
    13126 143 
    13127 144 
    13128 >1 
    13129 > renumber #16/p start 144
    13130 
    13131 8 residues renumbered 
    13132 
    13133 > changechains #16/p 4
    13134 
    13135 Chain IDs of 8 residues changed 
    13136 ['1', '1'] 
    13137 
    13138 > select #16/Dk
    13139 
    13140 8 atoms, 7 bonds, 1 residue, 1 model selected 
    13141 151 
    13142 152 
    13143 >1 
    13144 > renumber #16/Dk start 152
    13145 
    13146 1 residues renumbered 
    13147 
    13148 > changechains #16/Dk 4
    13149 
    13150 Chain IDs of 1 residues changed 
    13151 ['1', '2'] 
    13152 
    13153 > select #16/Bz
    13154 
    13155 16 atoms, 15 bonds, 2 residues, 1 model selected 
    13156 152 
    13157 153 
    13158 >1 
    13159 > renumber #16/Bz start 153
    13160 
    13161 2 residues renumbered 
    13162 
    13163 > changechains #16/Bz 4
    13164 
    13165 Chain IDs of 2 residues changed 
    13166 ['1', '2'] 
    13167 
    13168 > select #16/Br
    13169 
    13170 11 atoms, 10 bonds, 2 residues, 1 model selected 
    13171 154 
    13172 155 
    13173 >1 
    13174 > renumber #16/Br start 155
    13175 
    13176 2 residues renumbered 
    13177 
    13178 > changechains #16/Br 4
    13179 
    13180 Chain IDs of 2 residues changed 
    13181 ['1', '18'] 
    13182 
    13183 > select #16/F6
    13184 
    13185 144 atoms, 146 bonds, 18 residues, 1 model selected 
    13186 156 
    13187 181 
    13188 >25 
    13189 > renumber #16/F6 start 181
    13190 
    13191 18 residues renumbered 
    13192 
    13193 > changechains #16/F6 4
    13194 
    13195 Chain IDs of 18 residues changed 
    13196 ['1', '70'] 
    13197 
    13198 > select #16/q
    13199 
    13200 576 atoms, 590 bonds, 70 residues, 1 model selected 
    13201 198 
    13202 200 
    13203 >2 
    13204 > renumber #16/q start 200
    13205 
    13206 70 residues renumbered 
    13207 
    13208 > changechains #16/q 4
    13209 
    13210 Chain IDs of 70 residues changed 
    13211 ['1', '2'] 
    13212 
    13213 > select #16/Aw
    13214 
    13215 14 atoms, 13 bonds, 2 residues, 1 model selected 
    13216 269 
    13217 270 
    13218 >1 
    13219 > renumber #16/Aw start 270
    13220 
    13221 2 residues renumbered 
    13222 
    13223 > changechains #16/Aw 4
    13224 
    13225 Chain IDs of 2 residues changed 
    13226 ['1', '2'] 
    13227 
    13228 > select #16/X
    13229 
    13230 12 atoms, 11 bonds, 2 residues, 1 model selected 
    13231 271 
    13232 272 
    13233 >1 
    13234 > renumber #16/X start 272
    13235 
    13236 2 residues renumbered 
    13237 
    13238 > changechains #16/X 4
    13239 
    13240 Chain IDs of 2 residues changed 
    13241 ['1', '12'] 
    13242 
    13243 > select #16/Y
    13244 
    13245 92 atoms, 95 bonds, 12 residues, 1 model selected 
    13246 273 
    13247 274 
    13248 >1 
    13249 > renumber #16/Y start 274
    13250 
    13251 12 residues renumbered 
    13252 
    13253 > changechains #16/Y 4
    13254 
    13255 Chain IDs of 12 residues changed 
    13256 ['1', '5'] 
    13257 
    13258 > select #16/9
    13259 
    13260 41 atoms, 42 bonds, 5 residues, 1 model selected 
    13261 285 
    13262 286 
    13263 >1 
    13264 > renumber #16/9 start 286
    13265 
    13266 5 residues renumbered 
    13267 
    13268 > changechains #16/9 4
    13269 
    13270 Chain IDs of 5 residues changed 
    13271 ['1', '14'] 
    13272 
    13273 > select #16/c
    13274 
    13275 112 atoms, 116 bonds, 14 residues, 1 model selected 
    13276 290 
    13277 290 
    13278 >0 
    13279 
    13280 > delete #16/c:1
    13281 
    13282 > renumber #16/c start 291
    13283 
    13284 13 residues renumbered 
    13285 
    13286 > changechains #16/c 4
    13287 
    13288 Chain IDs of 13 residues changed 
    13289 ['1', '3'] 
    13290 
    13291 > select #16/Ge
    13292 
    13293 15 atoms, 14 bonds, 3 residues, 1 model selected 
    13294 303 
    13295 304 
    13296 >1 
    13297 > renumber #16/Ge start 304
    13298 
    13299 3 residues renumbered 
    13300 
    13301 > changechains #16/Ge 4
    13302 
    13303 Chain IDs of 3 residues changed 
    13304 ['1', '2'] 
    13305 
    13306 > select #16/Du
    13307 
    13308 13 atoms, 12 bonds, 2 residues, 1 model selected 
    13309 306 
    13310 309 
    13311 >3 
    13312 > renumber #16/Du start 309
    13313 
    13314 2 residues renumbered 
    13315 
    13316 > changechains #16/Du 4
    13317 
    13318 Chain IDs of 2 residues changed 
    13319 ['1', '3'] 
    13320 
    13321 > select #16/Ad
    13322 
    13323 18 atoms, 18 bonds, 3 residues, 1 model selected 
    13324 310 
    13325 311 
    13326 >1 
    13327 > renumber #16/Ad start 311
    13328 
    13329 3 residues renumbered 
    13330 
    13331 > changechains #16/Ad 4
    13332 
    13333 Chain IDs of 3 residues changed 
    13334 ['1', '7'] 
    13335 
    13336 > select #16/t
    13337 
    13338 50 atoms, 50 bonds, 7 residues, 1 model selected 
    13339 313 
    13340 314 
    13341 >1 
    13342 > renumber #16/t start 314
    13343 
    13344 7 residues renumbered 
    13345 
    13346 > changechains #16/t 4
    13347 
    13348 Chain IDs of 7 residues changed 
    13349 ['1', '32'] 
    13350 
    13351 > select #16/FU
    13352 
    13353 251 atoms, 254 bonds, 32 residues, 1 model selected 
    13354 320 
    13355 321 
    13356 >1 
    13357 > renumber #16/FU start 321
    13358 
    13359 32 residues renumbered 
    13360 
    13361 > changechains #16/FU 4
    13362 
    13363 Chain IDs of 32 residues changed 
    13364 ['1', '1'] 
    13365 
    13366 > select #16/By
    13367 
    13368 11 atoms, 10 bonds, 1 residue, 1 model selected 
    13369 352 
    13370 353 
    13371 >1 
    13372 > renumber #16/By start 353
    13373 
    13374 1 residues renumbered 
    13375 
    13376 > changechains #16/By 4
    13377 
    13378 Chain IDs of 1 residues changed 
    13379 ['1', '2'] 
    13380 
    13381 > select #16/AH
    13382 
    13383 13 atoms, 12 bonds, 2 residues, 1 model selected 
    13384 353 
    13385 354 
    13386 >1 
    13387 > renumber #16/AH start 354
    13388 
    13389 2 residues renumbered 
    13390 
    13391 > changechains #16/AH 4
    13392 
    13393 Chain IDs of 2 residues changed 
    13394 ['9', '18'] 
    13395 
    13396 > select #16/GV
    13397 
    13398 182 atoms, 182 bonds, 24 residues, 1 model selected 
    13399 355 
    13400 356 
    13401 >1 
    13402 > renumber #16/GV start 356
    13403 
    13404 24 residues renumbered 
    13405 
    13406 > changechains #16/GV 4
    13407 
    13408 Chain IDs of 24 residues changed 
    13409 ['1', '1'] 
    13410 
    13411 > select #16/Dq
    13412 
    13413 4 atoms, 3 bonds, 1 residue, 1 model selected 
    13414 379 
    13415 380 
    13416 >1 
    13417 > renumber #16/Dq start 380
    13418 
    13419 1 residues renumbered 
    13420 
    13421 > changechains #16/Dq 4
    13422 
    13423 Chain IDs of 1 residues changed 
    13424 ['1', '4'] 
    13425 
    13426 > select #16/GT
    13427 
    13428 28 atoms, 27 bonds, 4 residues, 1 model selected 
    13429 380 
    13430 381 
    13431 >1 
    13432 > renumber #16/GT start 381
    13433 
    13434 4 residues renumbered 
    13435 
    13436 > changechains #16/GT 4
    13437 
    13438 Chain IDs of 4 residues changed 
    13439 ['1', '2'] 
    13440 
    13441 > select #16/DS
    13442 
    13443 15 atoms, 15 bonds, 2 residues, 1 model selected 
    13444 384 
    13445 387 
    13446 >3 
    13447 > renumber #16/DS start 387
    13448 
    13449 2 residues renumbered 
    13450 
    13451 > changechains #16/DS 4
    13452 
    13453 Chain IDs of 2 residues changed 
    13454 ['1', '10'] 
    13455 
    13456 > select #16/Fp
    13457 
    13458 76 atoms, 78 bonds, 10 residues, 1 model selected 
    13459 388 
    13460 389 
    13461 >1 
    13462 > renumber #16/Fp start 389
    13463 
    13464 10 residues renumbered 
    13465 
    13466 > changechains #16/Fp 4
    13467 
    13468 Chain IDs of 10 residues changed 
    13469 ['1', '5'] 
    13470 
    13471 > select #16/7
    13472 
    13473 37 atoms, 37 bonds, 5 residues, 1 model selected 
    13474 398 
    13475 399 
    13476 >1 
    13477 > renumber #16/7 start 399
    13478 
    13479 5 residues renumbered 
    13480 
    13481 > changechains #16/7 4
    13482 
    13483 Chain IDs of 5 residues changed 
    13484 ['1', '2'] 
    13485 
    13486 > select #16/8
    13487 
    13488 16 atoms, 15 bonds, 2 residues, 1 model selected 
    13489 403 
    13490 404 
    13491 >1 
    13492 > renumber #16/8 start 404
    13493 
    13494 2 residues renumbered 
    13495 
    13496 > changechains #16/8 4
    13497 
    13498 Chain IDs of 2 residues changed 
    13499 ['1', '20'] 
    13500 
    13501 > select #16/FJ
    13502 
    13503 149 atoms, 150 bonds, 20 residues, 1 model selected 
    13504 405 
    13505 407 
    13506 >2 
    13507 > renumber #16/FJ start 407
    13508 
    13509 20 residues renumbered 
    13510 
    13511 > changechains #16/FJ 4
    13512 
    13513 Chain IDs of 20 residues changed 
    13514 ['1', '7'] 
    13515 
    13516 > select #16/Fu
    13517 
    13518 53 atoms, 53 bonds, 7 residues, 1 model selected 
    13519 426 
    13520 426 
    13521 >0 
    13522 
    13523 > delete #16/Fu:1
    13524 
    13525 > renumber #16/Fu start 427
    13526 
    13527 6 residues renumbered 
    13528 
    13529 > changechains #16/Fu 4
    13530 
    13531 Chain IDs of 6 residues changed 
    13532 ['1', '1'] 
    13533 
    13534 > select #16/D6
    13535 
    13536 8 atoms, 7 bonds, 1 residue, 1 model selected 
    13537 432 
    13538 469 
    13539 >37 
    13540 > renumber #16/D6 start 469
    13541 
    13542 1 residues renumbered 
    13543 
    13544 > changechains #16/D6 4
    13545 
    13546 Chain IDs of 1 residues changed 
    13547 ['1', '2'] 
    13548 
    13549 > select #16/Dl
    13550 
    13551 8 atoms, 7 bonds, 2 residues, 1 model selected 
    13552 469 
    13553 470 
    13554 >1 
    13555 > renumber #16/Dl start 470
    13556 
    13557 2 residues renumbered 
    13558 
    13559 > changechains #16/Dl 4
    13560 
    13561 Chain IDs of 2 residues changed 
    13562 ['1', '1'] 
    13563 
    13564 > select #16/DK
    13565 
    13566 9 atoms, 8 bonds, 1 residue, 1 model selected 
    13567 471 
    13568 472 
    13569 >1 
    13570 > renumber #16/DK start 472
    13571 
    13572 1 residues renumbered 
    13573 
    13574 > changechains #16/DK 4
    13575 
    13576 Chain IDs of 1 residues changed 
    13577 ['1', '1'] 
    13578 
    13579 > select #16/Dt
    13580 
    13581 9 atoms, 8 bonds, 1 residue, 1 model selected 
    13582 472 
    13583 473 
    13584 >1 
    13585 > renumber #16/Dt start 473
    13586 
    13587 1 residues renumbered 
    13588 
    13589 > changechains #16/Dt 4
    13590 
    13591 Chain IDs of 1 residues changed 
    13592 ['1', '2'] 
    13593 
    13594 > select #16/C2
    13595 
    13596 10 atoms, 9 bonds, 2 residues, 1 model selected 
    13597 473 
    13598 474 
    13599 >1 
    13600 > renumber #16/C2 start 474
    13601 
    13602 2 residues renumbered 
    13603 
    13604 > changechains #16/C2 4
    13605 
    13606 Chain IDs of 2 residues changed 
    13607 ['1', '3'] 
    13608 
    13609 > select #16/GR
    13610 
    13611 19 atoms, 18 bonds, 3 residues, 1 model selected 
    13612 475 
    13613 476 
    13614 >1 
    13615 > renumber #16/GR start 476
    13616 
    13617 3 residues renumbered 
    13618 
    13619 > changechains #16/GR 4
    13620 
    13621 Chain IDs of 3 residues changed 
    13622 ['11', '32'] 
    13623 
    13624 > select #16/FN
    13625 
    13626 518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected 
    13627 478 
    13628 435 
    13629 >-43 
    13630 
    13631 > delete #16/FN:44
    13632 
    13633 > delete #16/FN:43
    13634 
    13635 > delete #16/FN:42
    13636 
    13637 > delete #16/FN:41
    13638 
    13639 > delete #16/FN:40
    13640 
    13641 > delete #16/FN:39
    13642 
    13643 > delete #16/FN:38
    13644 
    13645 > delete #16/FN:37
    13646 
    13647 > delete #16/FN:36
    13648 
    13649 > delete #16/FN:35
    13650 
    13651 > delete #16/FN:34
    13652 
    13653 > delete #16/FN:33
    13654 
    13655 > delete #16/FN:32
    13656 
    13657 > delete #16/FN:31
    13658 
    13659 > delete #16/FN:30
    13660 
    13661 > delete #16/FN:29
    13662 
    13663 > delete #16/FN:28
    13664 
    13665 > delete #16/FN:27
    13666 
    13667 > delete #16/FN:26
    13668 
    13669 > delete #16/FN:25
    13670 
    13671 > delete #16/FN:24
    13672 
    13673 > delete #16/FN:23
    13674 
    13675 > delete #16/FN:22
    13676 
    13677 > delete #16/FN:21
    13678 
    13679 > delete #16/FN:20
    13680 
    13681 > delete #16/FN:19
    13682 
    13683 > delete #16/FN:18
    13684 
    13685 > delete #16/FN:17
    13686 
    13687 > delete #16/FN:16
    13688 
    13689 > delete #16/FN:15
    13690 
    13691 > delete #16/FN:14
    13692 
    13693 > delete #16/FN:13
    13694 
    13695 > delete #16/FN:12
    13696 
    13697 > delete #16/FN:11
    13698 
    13699 > delete #16/FN:10
    13700 
    13701 > delete #16/FN:9
    13702 
    13703 > delete #16/FN:8
    13704 
    13705 > delete #16/FN:7
    13706 
    13707 > delete #16/FN:6
    13708 
    13709 > delete #16/FN:5
    13710 
    13711 > delete #16/FN:4
    13712 
    13713 > delete #16/FN:3
    13714 
    13715 > delete #16/FN:2
    13716 
    13717 > delete #16/FN:1
    13718 
    13719 > renumber #16/FN start 479
    13720 
    13721 34 residues renumbered 
    13722 
    13723 > changechains #16/FN 4
    13724 
    13725 Chain IDs of 34 residues changed 
    13726 ['1', '12'] 
    13727 
    13728 > select #16/FK
    13729 
    13730 87 atoms, 88 bonds, 12 residues, 1 model selected 
    13731 502 
    13732 511 
    13733 >9 
    13734 > renumber #16/FK start 511
    13735 
    13736 12 residues renumbered 
    13737 
    13738 > changechains #16/FK 4
    13739 
    13740 Traceback (most recent call last): 
    13741 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    13742 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    13743 line 190, in   
    13744 run(session, f'changechains {outModel}/{hC} {firstChain}') 
    13745 File
    13746 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13747 packages/chimerax/core/commands/run.py", line 49, in run 
    13748 results = command.run(text, log=log, return_json=return_json) 
    13749 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13750 File
    13751 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13752 packages/chimerax/core/commands/cli.py", line 3213, in run 
    13753 result = ci.function(session, **kw_args) 
    13754 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13755 File
    13756 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13757 packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains 
    13758 raise UserError("Proposed chainID change conflicts with existing residue %s" %
    13759 r) 
    13760 chimerax.core.errors.UserError: Proposed chainID change conflicts with
    13761 existing residue renamedAndRenumberedModel #16/4 ALA 511 
    13762  
    13763 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    13764 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    13765 
    13766 > hide #!15 models
    13767 
    13768 > hide #1.2 models
    13769 
    13770 > show #!15 models
    13771 
    13772 > hide #!15 models
    13773 
    13774 > show #!15 models
    13775 
    13776 > close #16
    13777 
    13778 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    13779 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    13780 > #15 alignmentsMod1Mod.txt
    13781 
    13782 ['1', '8'] 
    13783 ['1', '8'] 
    13784 ['11'] 
    13785 ['1', '1'] 
    13786 ['11'] 
    13787 ['1', '1'] 
    13788 ['1', '3'] 
    13789 ['1', '3'] 
    13790 ['11'] 
    13791 ['1', '1'] 
    13792 ['1', '4'] 
    13793 ['1', '4'] 
    13794 ['1', '15'] 
    13795 ['1', '15'] 
    13796 ['11'] 
    13797 ['1', '1'] 
    13798 ['1', '9'] 
    13799 ['1', '9'] 
    13800 ['1', '4'] 
    13801 ['1', '4'] 
    13802 ['1', '28'] 
    13803 ['1', '28'] 
    13804 ['1', '15'] 
    13805 ['1', '15'] 
    13806 ['7', '15'] 
    13807 ['7', '15'] 
    13808 ['2', '44'] 
    13809 ['2', '44'] 
    13810 ['1', '7'] 
    13811 ['1', '7'] 
    13812 ['1', '8'] 
    13813 ['1', '8'] 
    13814 ['1', '13'] 
    13815 ['1', '13'] 
    13816 ['11'] 
    13817 ['1', '1'] 
    13818 ['1', '31'] 
    13819 ['1', '31'] 
    13820 ['12'] 
    13821 ['1', '2'] 
    13822 ['6', '22'] 
    13823 ['6', '22'] 
    13824 ['5', '21'] 
    13825 ['5', '21'] 
    13826 ['3', '140'] 
    13827 ['3', '140'] 
    13828 ['1', '3'] 
    13829 ['1', '3'] 
    13830 ['1', '8'] 
    13831 ['1', '8'] 
    13832 ['2', '18'] 
    13833 ['2', '18'] 
    13834 ['1', '7'] 
    13835 ['1', '7'] 
    13836 ['7', '12'] 
    13837 ['7', '12'] 
    13838 ['1', '10'] 
    13839 ['1', '10'] 
    13840 ['12'] 
    13841 ['1', '2'] 
    13842 ['1', '10'] 
    13843 ['1', '10'] 
    13844 ['4', '63'] 
    13845 ['4', '63'] 
    13846 ['9', '11'] 
    13847 ['9', '11'] 
    13848 ['11'] 
    13849 ['1', '1'] 
    13850 ['1', '5'] 
    13851 ['1', '5'] 
    13852 ['5', '33'] 
    13853 ['5', '33'] 
    13854 ['1', '4'] 
    13855 ['1', '4'] 
    13856 ['1', '74'] 
    13857 ['1', '74'] 
    13858 ['3', '18'] 
    13859 ['3', '18'] 
    13860 ['2', '22'] 
    13861 ['2', '22'] 
    13862 ['1', '4'] 
    13863 ['1', '4'] 
    13864 ['1', '3'] 
    13865 ['1', '3'] 
    13866 ['2', '81'] 
    13867 ['2', '81'] 
    13868 ['1', '8'] 
    13869 ['1', '8'] 
    13870 ['1', '5'] 
    13871 ['1', '5'] 
    13872 ['14', '47'] 
    13873 ['14', '47'] 
    13874 ['1', '5'] 
    13875 ['1', '5'] 
    13876 ['1', '3'] 
    13877 ['1', '3'] 
    13878 ['11'] 
    13879 ['1', '1'] 
    13880 ['1', '7'] 
    13881 ['1', '7'] 
    13882 ['1', '14'] 
    13883 ['1', '14'] 
    13884 ['1', '5'] 
    13885 ['1', '5'] 
    13886 ['1', '4'] 
    13887 ['1', '4'] 
    13888 ['1', '7'] 
    13889 ['1', '7'] 
    13890 ['1', '14'] 
    13891 ['1', '14'] 
    13892 ['1', '25'] 
    13893 ['1', '25'] 
    13894 ['1', '20'] 
    13895 ['1', '20'] 
    13896 ['1', '8'] 
    13897 ['1', '8'] 
    13898 ['11'] 
    13899 ['1', '1'] 
    13900 ['12'] 
    13901 ['1', '2'] 
    13902 ['12'] 
    13903 ['1', '2'] 
    13904 ['1', '18'] 
    13905 ['1', '18'] 
    13906 ['1', '70'] 
    13907 ['1', '70'] 
    13908 ['12'] 
    13909 ['1', '2'] 
    13910 ['12'] 
    13911 ['1', '2'] 
    13912 ['1', '12'] 
    13913 ['1', '12'] 
    13914 ['1', '5'] 
    13915 ['1', '5'] 
    13916 ['1', '14'] 
    13917 ['1', '14'] 
    13918 ['1', '3'] 
    13919 ['1', '3'] 
    13920 ['12'] 
    13921 ['1', '2'] 
    13922 ['1', '3'] 
    13923 ['1', '3'] 
    13924 ['1', '7'] 
    13925 ['1', '7'] 
    13926 ['1', '32'] 
    13927 ['1', '32'] 
    13928 ['11'] 
    13929 ['1', '1'] 
    13930 ['12'] 
    13931 ['1', '2'] 
    13932 ['9', '18'] 
    13933 ['9', '18'] 
    13934 ['11'] 
    13935 ['1', '1'] 
    13936 ['1', '4'] 
    13937 ['1', '4'] 
    13938 ['12'] 
    13939 ['1', '2'] 
    13940 ['1', '10'] 
    13941 ['1', '10'] 
    13942 ['1', '5'] 
    13943 ['1', '5'] 
    13944 ['12'] 
    13945 ['1', '2'] 
    13946 ['1', '20'] 
    13947 ['1', '20'] 
    13948 ['1', '7'] 
    13949 ['1', '7'] 
    13950 ['11'] 
    13951 ['1', '1'] 
    13952 ['12'] 
    13953 ['1', '2'] 
    13954 ['11'] 
    13955 ['1', '1'] 
    13956 ['11'] 
    13957 ['1', '1'] 
    13958 ['12'] 
    13959 ['1', '2'] 
    13960 ['1', '3'] 
    13961 ['1', '3'] 
    13962 ['11', '32'] 
    13963 ['11', '32'] 
    13964 ['1', '12'] 
    13965 ['1', '12'] 
    13966 ['1', '3'] 
    13967 ['1', '3'] 
    13968 ['2', '15'] 
    13969 ['2', '15'] 
    13970 ['11'] 
    13971 ['1', '1'] 
    13972 ['11'] 
    13973 ['1', '1'] 
    13974 ['1', '153'] 
    13975 ['1', '153'] 
    13976 ['11'] 
    13977 ['1', '1'] 
    13978 ['1', '39'] 
    13979 ['1', '39'] 
    13980 ['1', '27'] 
    13981 ['1', '27'] 
    13982 ['1', '37'] 
    13983 ['1', '37'] 
    13984 ['12'] 
    13985 ['1', '2'] 
    13986 ['11'] 
    13987 ['1', '1'] 
    13988 ['11'] 
    13989 ['1', '1'] 
    13990 ['1', '56'] 
    13991 ['1', '56'] 
    13992 ['1', '9'] 
    13993 ['1', '9'] 
    13994 ['1', '4'] 
    13995 ['1', '4'] 
    13996 ['12'] 
    13997 ['1', '2'] 
    13998 ['1', '3'] 
    13999 ['1', '3'] 
    14000 ['12'] 
    14001 ['1', '2'] 
    14002 ['11'] 
    14003 ['1', '1'] 
    14004 ['1', '10'] 
    14005 ['1', '10'] 
    14006 ['1', '4'] 
    14007 ['1', '4'] 
    14008 ['11'] 
    14009 ['1', '1'] 
    14010 ['12'] 
    14011 ['1', '2'] 
    14012 ['1', '30'] 
    14013 ['1', '30'] 
    14014 ['3', '45'] 
    14015 ['3', '45'] 
    14016 ['1', '9'] 
    14017 ['1', '9'] 
    14018 ['2', '4'] 
    14019 ['2', '4'] 
    14020 ['12'] 
    14021 ['1', '2'] 
    14022 ['1', '59'] 
    14023 ['1', '59'] 
    14024 ['1', '13'] 
    14025 ['1', '13'] 
    14026 ['1', '34'] 
    14027 ['1', '34'] 
    14028 ['1', '5'] 
    14029 ['1', '5'] 
    14030 ['3', '25'] 
    14031 ['3', '25'] 
    14032 ['1', '4'] 
    14033 ['1', '4'] 
    14034 ['1', '3'] 
    14035 ['1', '3'] 
    14036 ['6', '20'] 
    14037 ['6', '20'] 
    14038 ['1', '11'] 
    14039 ['1', '11'] 
    14040 ['3', '39'] 
    14041 ['3', '39'] 
    14042 ['1', '27'] 
    14043 ['1', '27'] 
    14044 ['1', '21'] 
    14045 ['1', '21'] 
    14046 ['11'] 
    14047 ['1', '1'] 
    14048 ['1', '4'] 
    14049 ['1', '4'] 
    14050 ['2', '33'] 
    14051 ['2', '33'] 
    14052 ['11'] 
    14053 ['1', '1'] 
    14054 ['11'] 
    14055 ['1', '1'] 
    14056 ['12'] 
    14057 ['1', '2'] 
    14058 ['11'] 
    14059 ['1', '1'] 
    14060 ['11'] 
    14061 ['1', '1'] 
    14062 ['1', '8'] 
    14063 ['1', '8'] 
    14064 LtaP35.1590.mRNA_A 
    14065 LtaP35.1450.mRNA_A 
    14066 LtaP07.0060.mRNA_A 
    14067 LtaP32.3800.mRNA_A 
    14068 LtaP13.0770.mRNA_A 
    14069 sp|P14548.2|CYB_LEITA_A 
    14070 LtaP35.0210.mRNA_A 
    14071 GET91263.1_A 
    14072 LtaP35.0250.mRNA_A 
    14073 GET89654.1_A 
    14074 
    14075 > combine #15 close false name renamedAndRenumberedModel
    14076 
    14077 Renumering chain LtaP35.1590.mRNA_A 
    14078 ['1', '8'] 
    14079 
    14080 > select #16/GC
    14081 
    14082 66 atoms, 66 bonds, 8 residues, 1 model selected 
    14083 0 
    14084 17 
    14085 >17 
    14086 > renumber #16/GC start 17
    14087 
    14088 8 residues renumbered 
    14089 ['1', '1'] 
    14090 
    14091 > select #16/Bd
    14092 
    14093 4 atoms, 3 bonds, 1 residue, 1 model selected 
    14094 24 
    14095 25 
    14096 >1 
    14097 > renumber #16/Bd start 25
    14098 
    14099 1 residues renumbered 
    14100 
    14101 > changechains #16/Bd GC
    14102 
    14103 Chain IDs of 1 residues changed 
    14104 ['1', '1'] 
    14105 
    14106 > select #16/Ca
    14107 
    14108 4 atoms, 3 bonds, 1 residue, 1 model selected 
    14109 25 
    14110 26 
    14111 >1 
    14112 > renumber #16/Ca start 26
    14113 
    14114 1 residues renumbered 
    14115 
    14116 > changechains #16/Ca GC
    14117 
    14118 Chain IDs of 1 residues changed 
    14119 ['1', '3'] 
    14120 
    14121 > select #16/AP
    14122 
    14123 19 atoms, 19 bonds, 3 residues, 1 model selected 
    14124 26 
    14125 27 
    14126 >1 
    14127 > renumber #16/AP start 27
    14128 
    14129 3 residues renumbered 
    14130 
    14131 > changechains #16/AP GC
    14132 
    14133 Chain IDs of 3 residues changed 
    14134 ['1', '1'] 
    14135 
    14136 > select #16/BN
    14137 
    14138 6 atoms, 5 bonds, 1 residue, 1 model selected 
    14139 29 
    14140 30 
    14141 >1 
    14142 > renumber #16/BN start 30
    14143 
    14144 1 residues renumbered 
    14145 
    14146 > changechains #16/BN GC
    14147 
    14148 Chain IDs of 1 residues changed 
    14149 ['1', '4'] 
    14150 
    14151 > select #16/FF
    14152 
    14153 32 atoms, 32 bonds, 4 residues, 1 model selected 
    14154 30 
    14155 31 
    14156 >1 
    14157 > renumber #16/FF start 31
    14158 
    14159 4 residues renumbered 
    14160 
    14161 > changechains #16/FF GC
    14162 
    14163 Chain IDs of 4 residues changed 
    14164 ['1', '15'] 
    14165 
    14166 > select #16/Fo
    14167 
    14168 103 atoms, 106 bonds, 15 residues, 1 model selected 
    14169 34 
    14170 35 
    14171 >1 
    14172 > renumber #16/Fo start 35
    14173 
    14174 15 residues renumbered 
    14175 
    14176 > changechains #16/Fo GC
    14177 
    14178 Chain IDs of 15 residues changed 
    14179 ['1', '1'] 
    14180 
    14181 > select #16/Cy
    14182 
    14183 8 atoms, 7 bonds, 1 residue, 1 model selected 
    14184 49 
    14185 50 
    14186 >1 
    14187 > renumber #16/Cy start 50
    14188 
    14189 1 residues renumbered 
    14190 
    14191 > changechains #16/Cy GC
    14192 
    14193 Chain IDs of 1 residues changed 
    14194 ['1', '9'] 
    14195 
    14196 > select #16/EY
    14197 
    14198 66 atoms, 67 bonds, 9 residues, 1 model selected 
    14199 50 
    14200 51 
    14201 >1 
    14202 > renumber #16/EY start 51
    14203 
    14204 9 residues renumbered 
    14205 
    14206 > changechains #16/EY GC
    14207 
    14208 Chain IDs of 9 residues changed 
    14209 ['1', '4'] 
    14210 
    14211 > select #16/FV
    14212 
    14213 24 atoms, 23 bonds, 4 residues, 1 model selected 
    14214 59 
    14215 60 
    14216 >1 
    14217 > renumber #16/FV start 60
    14218 
    14219 4 residues renumbered 
    14220 
    14221 > changechains #16/FV GC
    14222 
    14223 Chain IDs of 4 residues changed 
    14224 ['1', '28'] 
    14225 
    14226 > select #16/Ey
    14227 
    14228 210 atoms, 213 bonds, 28 residues, 1 model selected 
    14229 63 
    14230 64 
    14231 >1 
    14232 > renumber #16/Ey start 64
    14233 
    14234 28 residues renumbered 
    14235 
    14236 > changechains #16/Ey GC
    14237 
    14238 Chain IDs of 28 residues changed 
    14239 ['1', '15'] 
    14240 
    14241 > select #16/K
    14242 
    14243 102 atoms, 102 bonds, 15 residues, 1 model selected 
    14244 91 
    14245 92 
    14246 >1 
    14247 > renumber #16/K start 92
    14248 
    14249 15 residues renumbered 
    14250 
    14251 > changechains #16/K GC
    14252 
    14253 Chain IDs of 15 residues changed 
    14254 ['7', '15'] 
    14255 
    14256 > select #16/L
    14257 
    14258 184 atoms, 187 bonds, 22 residues, 1 model selected 
    14259 106 
    14260 107 
    14261 >1 
    14262 > renumber #16/L start 107
    14263 
    14264 22 residues renumbered 
    14265 
    14266 > changechains #16/L GC
    14267 
    14268 Chain IDs of 22 residues changed 
    14269 ['2', '44'] 
    14270 
    14271 > select #16/Ee
    14272 
    14273 355 atoms, 363 bonds, 44 residues, 1 model selected 
    14274 128 
    14275 129 
    14276 >1 
    14277 > renumber #16/Ee start 129
    14278 
    14279 44 residues renumbered 
    14280 
    14281 > changechains #16/Ee GC
    14282 
    14283 Chain IDs of 44 residues changed 
    14284 Renumering chain LtaP35.1450.mRNA_A 
    14285 ['1', '7'] 
    14286 
    14287 > select #16/Gc
    14288 
    14289 52 atoms, 52 bonds, 7 residues, 1 model selected 
    14290 0 
    14291 2 
    14292 >2 
    14293 > renumber #16/Gc start 2
    14294 
    14295 7 residues renumbered 
    14296 ['1', '8'] 
    14297 
    14298 > select #16/Ex
    14299 
    14300 55 atoms, 56 bonds, 8 residues, 1 model selected 
    14301 8 
    14302 10 
    14303 >2 
    14304 > renumber #16/Ex start 10
    14305 
    14306 8 residues renumbered 
    14307 
    14308 > changechains #16/Ex Gc
    14309 
    14310 Chain IDs of 8 residues changed 
    14311 ['1', '13'] 
    14312 
    14313 > select #16/E6
    14314 
    14315 98 atoms, 100 bonds, 13 residues, 1 model selected 
    14316 17 
    14317 18 
    14318 >1 
    14319 > renumber #16/E6 start 18
    14320 
    14321 13 residues renumbered 
    14322 
    14323 > changechains #16/E6 Gc
    14324 
    14325 Chain IDs of 13 residues changed 
    14326 ['1', '1'] 
    14327 
    14328 > select #16/Ai
    14329 
    14330 11 atoms, 10 bonds, 1 residue, 1 model selected 
    14331 30 
    14332 31 
    14333 >1 
    14334 > renumber #16/Ai start 31
    14335 
    14336 1 residues renumbered 
    14337 
    14338 > changechains #16/Ai Gc
    14339 
    14340 Chain IDs of 1 residues changed 
    14341 ['1', '31'] 
    14342 
    14343 > select #16/0
    14344 
    14345 233 atoms, 235 bonds, 31 residues, 1 model selected 
    14346 31 
    14347 32 
    14348 >1 
    14349 > renumber #16/0 start 32
    14350 
    14351 31 residues renumbered 
    14352 
    14353 > changechains #16/0 Gc
    14354 
    14355 Chain IDs of 31 residues changed 
    14356 ['1', '2'] 
    14357 
    14358 > select #16/U
    14359 
    14360 11 atoms, 10 bonds, 2 residues, 1 model selected 
    14361 62 
    14362 63 
    14363 >1 
    14364 > renumber #16/U start 63
    14365 
    14366 2 residues renumbered 
    14367 
    14368 > changechains #16/U Gc
    14369 
    14370 Chain IDs of 2 residues changed 
    14371 ['6', '22'] 
    14372 
    14373 > select #16/d
    14374 
    14375 176 atoms, 182 bonds, 22 residues, 1 model selected 
    14376 64 
    14377 65 
    14378 >1 
    14379 > renumber #16/d start 65
    14380 
    14381 22 residues renumbered 
    14382 
    14383 > changechains #16/d Gc
    14384 
    14385 Chain IDs of 22 residues changed 
    14386 ['5', '21'] 
    14387 
    14388 > select #16/EV
    14389 
    14390 161 atoms, 160 bonds, 21 residues, 1 model selected 
    14391 86 
    14392 87 
    14393 >1 
    14394 > renumber #16/EV start 87
    14395 
    14396 21 residues renumbered 
    14397 
    14398 > changechains #16/EV Gc
    14399 
    14400 Chain IDs of 21 residues changed 
    14401 
    14402 > delete #16/Ew:132
    14403 
    14404 > renumber #16/Ew:133-9999999 start 132
    14405 
    14406 11 residues renumbered 
    14407 ['3', '139'] 
    14408 
    14409 > select #16/Ew
    14410 
    14411 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    14412 107 
    14413 108 
    14414 >1 
    14415 > renumber #16/Ew start 108
    14416 
    14417 142 residues renumbered 
    14418 
    14419 > changechains #16/Ew Gc
    14420 
    14421 Chain IDs of 142 residues changed 
    14422 ['1', '3'] 
    14423 
    14424 > select #16/GO
    14425 
    14426 18 atoms, 18 bonds, 3 residues, 1 model selected 
    14427 249 
    14428 250 
    14429 >1 
    14430 > renumber #16/GO start 250
    14431 
    14432 3 residues renumbered 
    14433 
    14434 > changechains #16/GO Gc
    14435 
    14436 Chain IDs of 3 residues changed 
    14437 ['1', '8'] 
    14438 
    14439 > select #16/Z
    14440 
    14441 69 atoms, 71 bonds, 8 residues, 1 model selected 
    14442 252 
    14443 253 
    14444 >1 
    14445 > renumber #16/Z start 253
    14446 
    14447 8 residues renumbered 
    14448 
    14449 > changechains #16/Z Gc
    14450 
    14451 Chain IDs of 8 residues changed 
    14452 ['2', '18'] 
    14453 
    14454 > select #16/ES
    14455 
    14456 163 atoms, 164 bonds, 18 residues, 1 model selected 
    14457 260 
    14458 262 
    14459 >2 
    14460 > renumber #16/ES start 262
    14461 
    14462 18 residues renumbered 
    14463 
    14464 > changechains #16/ES Gc
    14465 
    14466 Chain IDs of 18 residues changed 
    14467 ['1', '7'] 
    14468 
    14469 > select #16/Fc
    14470 
    14471 40 atoms, 41 bonds, 7 residues, 1 model selected 
    14472 279 
    14473 282 
    14474 >3 
    14475 > renumber #16/Fc start 282
    14476 
    14477 7 residues renumbered 
    14478 
    14479 > changechains #16/Fc Gc
    14480 
    14481 Chain IDs of 7 residues changed 
    14482 ['7', '12'] 
    14483 
    14484 > select #16/Fa
    14485 
    14486 177 atoms, 179 bonds, 24 residues, 1 model selected 
    14487 288 
    14488 289 
    14489 >1 
    14490 > renumber #16/Fa start 289
    14491 
    14492 24 residues renumbered 
    14493 
    14494 > changechains #16/Fa Gc
    14495 
    14496 Chain IDs of 24 residues changed 
    14497 ['1', '10'] 
    14498 
    14499 > select #16/2
    14500 
    14501 81 atoms, 83 bonds, 10 residues, 1 model selected 
    14502 312 
    14503 314 
    14504 >2 
    14505 > renumber #16/2 start 314
    14506 
    14507 10 residues renumbered 
    14508 
    14509 > changechains #16/2 Gc
    14510 
    14511 Chain IDs of 10 residues changed 
    14512 ['1', '2'] 
    14513 
    14514 > select #16/E
    14515 
    14516 16 atoms, 16 bonds, 2 residues, 1 model selected 
    14517 323 
    14518 326 
    14519 >3 
    14520 > renumber #16/E start 326
    14521 
    14522 2 residues renumbered 
    14523 
    14524 > changechains #16/E Gc
    14525 
    14526 Chain IDs of 2 residues changed 
    14527 ['1', '10'] 
    14528 
    14529 > select #16/Ff
    14530 
    14531 75 atoms, 76 bonds, 10 residues, 1 model selected 
    14532 327 
    14533 328 
    14534 >1 
    14535 > renumber #16/Ff start 328
    14536 
    14537 10 residues renumbered 
    14538 
    14539 > changechains #16/Ff Gc
    14540 
    14541 Chain IDs of 10 residues changed 
    14542 ['4', '63'] 
    14543 
    14544 > select #16/E2
    14545 
    14546 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    14547 337 
    14548 338 
    14549 >1 
    14550 > renumber #16/E2 start 338
    14551 
    14552 132 residues renumbered 
    14553 
    14554 > changechains #16/E2 Gc
    14555 
    14556 Chain IDs of 132 residues changed 
    14557 ['9', '11'] 
    14558 
    14559 > select #16/W
    14560 
    14561 182 atoms, 189 bonds, 20 residues, 1 model selected 
    14562 469 
    14563 470 
    14564 >1 
    14565 > renumber #16/W start 470
    14566 
    14567 20 residues renumbered 
    14568 
    14569 > changechains #16/W Gc
    14570 
    14571 Chain IDs of 20 residues changed 
    14572 ['1', '1'] 
    14573 
    14574 > select #16/BM
    14575 
    14576 7 atoms, 6 bonds, 1 residue, 1 model selected 
    14577 489 
    14578 490 
    14579 >1 
    14580 > renumber #16/BM start 490
    14581 
    14582 1 residues renumbered 
    14583 
    14584 > changechains #16/BM Gc
    14585 
    14586 Chain IDs of 1 residues changed 
    14587 Renumering chain LtaP07.0060.mRNA_A 
    14588 ['1', '5'] 
    14589 
    14590 > select #16/A
    14591 
    14592 32 atoms, 33 bonds, 5 residues, 1 model selected 
    14593 0 
    14594 5 
    14595 >5 
    14596 > renumber #16/A start 5
    14597 
    14598 5 residues renumbered 
    14599 ['5', '33'] 
    14600 
    14601 > select #16/Fd
    14602 
    14603 314 atoms, 324 bonds, 36 residues, 1 model selected 
    14604 9 
    14605 10 
    14606 >1 
    14607 > renumber #16/Fd start 10
    14608 
    14609 36 residues renumbered 
    14610 
    14611 > changechains #16/Fd A
    14612 
    14613 Chain IDs of 36 residues changed 
    14614 ['1', '4'] 
    14615 
    14616 > select #16/Ef
    14617 
    14618 24 atoms, 23 bonds, 4 residues, 1 model selected 
    14619 45 
    14620 46 
    14621 >1 
    14622 > renumber #16/Ef start 46
    14623 
    14624 4 residues renumbered 
    14625 
    14626 > changechains #16/Ef A
    14627 
    14628 Chain IDs of 4 residues changed 
    14629 ['1', '74'] 
    14630 
    14631 > select #16/Eg
    14632 
    14633 577 atoms, 589 bonds, 74 residues, 1 model selected 
    14634 49 
    14635 50 
    14636 >1 
    14637 > renumber #16/Eg start 50
    14638 
    14639 74 residues renumbered 
    14640 
    14641 > changechains #16/Eg A
    14642 
    14643 Chain IDs of 74 residues changed 
    14644 ['3', '18'] 
    14645 
    14646 > select #16/j
    14647 
    14648 160 atoms, 162 bonds, 22 residues, 1 model selected 
    14649 123 
    14650 124 
    14651 >1 
    14652 > renumber #16/j start 124
    14653 
    14654 22 residues renumbered 
    14655 
    14656 > changechains #16/j A
    14657 
    14658 Chain IDs of 22 residues changed 
    14659 
    14660 > renumber #16/Ei:7-9999999 start 8
    14661 
    14662 19 residues renumbered 
    14663 
    14664 > ~bond #16/Ei:6@C #16/Ei:8@N
    14665 
    14666 ['2', '21'] 
    14667 
    14668 > select #16/Ei
    14669 
    14670 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    14671 145 
    14672 145 
    14673 >0 
    14674 
    14675 > delete #16/Ei:1
    14676 
    14677 > renumber #16/Ei start 146
    14678 
    14679 24 residues renumbered 
    14680 
    14681 > changechains #16/Ei A
    14682 
    14683 Chain IDs of 24 residues changed 
    14684 ['1', '4'] 
    14685 
    14686 > select #16/Bi
    14687 
    14688 23 atoms, 22 bonds, 4 residues, 1 model selected 
    14689 170 
    14690 168 
    14691 >-2 
    14692 
    14693 > delete #16/Bi:3
    14694 
    14695 > delete #16/Bi:2
    14696 
    14697 > delete #16/Bi:1
    14698 
    14699 > renumber #16/Bi start 171
    14700 
    14701 1 residues renumbered 
    14702 
    14703 > changechains #16/Bi A
    14704 
    14705 Chain IDs of 1 residues changed 
    14706 ['1', '3'] 
    14707 
    14708 > select #16/GM
    14709 
    14710 21 atoms, 20 bonds, 3 residues, 1 model selected 
    14711 171 
    14712 171 
    14713 >0 
    14714 
    14715 > delete #16/GM:1
    14716 
    14717 > renumber #16/GM start 172
    14718 
    14719 2 residues renumbered 
    14720 
    14721 > changechains #16/GM A
    14722 
    14723 Chain IDs of 2 residues changed 
    14724 ['2', '81'] 
    14725 
    14726 > select #16/E8
    14727 
    14728 695 atoms, 717 bonds, 86 residues, 1 model selected 
    14729 173 
    14730 174 
    14731 >1 
    14732 > renumber #16/E8 start 174
    14733 
    14734 86 residues renumbered 
    14735 
    14736 > changechains #16/E8 A
    14737 
    14738 Chain IDs of 86 residues changed 
    14739 Renumering chain LtaP32.3800.mRNA_A 
    14740 ['1', '8'] 
    14741 
    14742 > select #16/N
    14743 
    14744 66 atoms, 69 bonds, 8 residues, 1 model selected 
    14745 0 
    14746 34 
    14747 >34 
    14748 > renumber #16/N start 34
    14749 
    14750 8 residues renumbered 
    14751 ['1', '5'] 
    14752 
    14753 > select #16/GZ
    14754 
    14755 35 atoms, 34 bonds, 5 residues, 1 model selected 
    14756 41 
    14757 42 
    14758 >1 
    14759 > renumber #16/GZ start 42
    14760 
    14761 5 residues renumbered 
    14762 
    14763 > changechains #16/GZ N
    14764 
    14765 Chain IDs of 5 residues changed 
    14766 ['14', '47'] 
    14767 
    14768 > select #16/FT
    14769 
    14770 810 atoms, 833 bonds, 101 residues, 1 model selected 
    14771 46 
    14772 47 
    14773 >1 
    14774 > renumber #16/FT start 47
    14775 
    14776 101 residues renumbered 
    14777 
    14778 > changechains #16/FT N
    14779 
    14780 Chain IDs of 101 residues changed 
    14781 Renumering chain LtaP13.0770.mRNA_A 
    14782 ['1', '5'] 
    14783 
    14784 > select #16/4
    14785 
    14786 50 atoms, 51 bonds, 5 residues, 1 model selected 
    14787 0 
    14788 25 
    14789 >25 
    14790 > renumber #16/4 start 25
    14791 
    14792 5 residues renumbered 
    14793 ['1', '3'] 
    14794 
    14795 > select #16/D
    14796 
    14797 20 atoms, 20 bonds, 3 residues, 1 model selected 
    14798 29 
    14799 30 
    14800 >1 
    14801 > renumber #16/D start 30
    14802 
    14803 3 residues renumbered 
    14804 
    14805 > changechains #16/D 4
    14806 
    14807 Chain IDs of 3 residues changed 
    14808 ['1', '1'] 
    14809 
    14810 > select #16/CN
    14811 
    14812 6 atoms, 5 bonds, 1 residue, 1 model selected 
    14813 32 
    14814 33 
    14815 >1 
    14816 > renumber #16/CN start 33
    14817 
    14818 1 residues renumbered 
    14819 
    14820 > changechains #16/CN 4
    14821 
    14822 Chain IDs of 1 residues changed 
    14823 ['1', '7'] 
    14824 
    14825 > select #16/FG
    14826 
    14827 48 atoms, 48 bonds, 7 residues, 1 model selected 
    14828 33 
    14829 34 
    14830 >1 
    14831 > renumber #16/FG start 34
    14832 
    14833 7 residues renumbered 
    14834 
    14835 > changechains #16/FG 4
    14836 
    14837 Chain IDs of 7 residues changed 
    14838 ['1', '14'] 
    14839 
    14840 > select #16/GH
    14841 
    14842 92 atoms, 92 bonds, 14 residues, 1 model selected 
    14843 40 
    14844 57 
    14845 >17 
    14846 > renumber #16/GH start 57
    14847 
    14848 14 residues renumbered 
    14849 
    14850 > changechains #16/GH 4
    14851 
    14852 Chain IDs of 14 residues changed 
    14853 ['1', '5'] 
    14854 
    14855 > select #16/GW
    14856 
    14857 46 atoms, 46 bonds, 5 residues, 1 model selected 
    14858 70 
    14859 71 
    14860 >1 
    14861 > renumber #16/GW start 71
    14862 
    14863 5 residues renumbered 
    14864 
    14865 > changechains #16/GW 4
    14866 
    14867 Chain IDs of 5 residues changed 
    14868 ['1', '4'] 
    14869 
    14870 > select #16/Fj
    14871 
    14872 24 atoms, 23 bonds, 4 residues, 1 model selected 
    14873 75 
    14874 76 
    14875 >1 
    14876 > renumber #16/Fj start 76
    14877 
    14878 4 residues renumbered 
    14879 
    14880 > changechains #16/Fj 4
    14881 
    14882 Chain IDs of 4 residues changed 
    14883 ['1', '7'] 
    14884 
    14885 > select #16/E4
    14886 
    14887 48 atoms, 48 bonds, 7 residues, 1 model selected 
    14888 79 
    14889 80 
    14890 >1 
    14891 > renumber #16/E4 start 80
    14892 
    14893 7 residues renumbered 
    14894 
    14895 > changechains #16/E4 4
    14896 
    14897 Chain IDs of 7 residues changed 
    14898 ['1', '14'] 
    14899 
    14900 > select #16/Er
    14901 
    14902 99 atoms, 102 bonds, 14 residues, 1 model selected 
    14903 86 
    14904 87 
    14905 >1 
    14906 > renumber #16/Er start 87
    14907 
    14908 14 residues renumbered 
    14909 
    14910 > changechains #16/Er 4
    14911 
    14912 Chain IDs of 14 residues changed 
    14913 ['1', '25'] 
    14914 
    14915 > select #16/ER
    14916 
    14917 208 atoms, 211 bonds, 25 residues, 1 model selected 
    14918 100 
    14919 101 
    14920 >1 
    14921 > renumber #16/ER start 101
    14922 
    14923 25 residues renumbered 
    14924 
    14925 > changechains #16/ER 4
    14926 
    14927 Chain IDs of 25 residues changed 
    14928 ['1', '20'] 
    14929 
    14930 > select #16/Fz
    14931 
    14932 146 atoms, 147 bonds, 20 residues, 1 model selected 
    14933 125 
    14934 124 
    14935 >-1 
    14936 
    14937 > delete #16/Fz:2
    14938 
    14939 > delete #16/Fz:1
    14940 
    14941 > renumber #16/Fz start 126
    14942 
    14943 18 residues renumbered 
    14944 
    14945 > changechains #16/Fz 4
    14946 
    14947 Chain IDs of 18 residues changed 
    14948 ['1', '8'] 
    14949 
    14950 > select #16/p
    14951 
    14952 62 atoms, 62 bonds, 8 residues, 1 model selected 
    14953 143 
    14954 144 
    14955 >1 
    14956 > renumber #16/p start 144
    14957 
    14958 8 residues renumbered 
    14959 
    14960 > changechains #16/p 4
    14961 
    14962 Chain IDs of 8 residues changed 
    14963 ['1', '1'] 
    14964 
    14965 > select #16/Dk
    14966 
    14967 8 atoms, 7 bonds, 1 residue, 1 model selected 
    14968 151 
    14969 152 
    14970 >1 
    14971 > renumber #16/Dk start 152
    14972 
    14973 1 residues renumbered 
    14974 
    14975 > changechains #16/Dk 4
    14976 
    14977 Chain IDs of 1 residues changed 
    14978 ['1', '2'] 
    14979 
    14980 > select #16/Bz
    14981 
    14982 16 atoms, 15 bonds, 2 residues, 1 model selected 
    14983 152 
    14984 153 
    14985 >1 
    14986 > renumber #16/Bz start 153
    14987 
    14988 2 residues renumbered 
    14989 
    14990 > changechains #16/Bz 4
    14991 
    14992 Chain IDs of 2 residues changed 
    14993 ['1', '2'] 
    14994 
    14995 > select #16/Br
    14996 
    14997 11 atoms, 10 bonds, 2 residues, 1 model selected 
    14998 154 
    14999 155 
    15000 >1 
    15001 > renumber #16/Br start 155
    15002 
    15003 2 residues renumbered 
    15004 
    15005 > changechains #16/Br 4
    15006 
    15007 Chain IDs of 2 residues changed 
    15008 ['1', '18'] 
    15009 
    15010 > select #16/F6
    15011 
    15012 144 atoms, 146 bonds, 18 residues, 1 model selected 
    15013 156 
    15014 181 
    15015 >25 
    15016 > renumber #16/F6 start 181
    15017 
    15018 18 residues renumbered 
    15019 
    15020 > changechains #16/F6 4
    15021 
    15022 Chain IDs of 18 residues changed 
    15023 ['1', '70'] 
    15024 
    15025 > select #16/q
    15026 
    15027 576 atoms, 590 bonds, 70 residues, 1 model selected 
    15028 198 
    15029 200 
    15030 >2 
    15031 > renumber #16/q start 200
    15032 
    15033 70 residues renumbered 
    15034 
    15035 > changechains #16/q 4
    15036 
    15037 Chain IDs of 70 residues changed 
    15038 ['1', '2'] 
    15039 
    15040 > select #16/Aw
    15041 
    15042 14 atoms, 13 bonds, 2 residues, 1 model selected 
    15043 269 
    15044 270 
    15045 >1 
    15046 > renumber #16/Aw start 270
    15047 
    15048 2 residues renumbered 
    15049 
    15050 > changechains #16/Aw 4
    15051 
    15052 Chain IDs of 2 residues changed 
    15053 ['1', '2'] 
    15054 
    15055 > select #16/X
    15056 
    15057 12 atoms, 11 bonds, 2 residues, 1 model selected 
    15058 271 
    15059 272 
    15060 >1 
    15061 > renumber #16/X start 272
    15062 
    15063 2 residues renumbered 
    15064 
    15065 > changechains #16/X 4
    15066 
    15067 Chain IDs of 2 residues changed 
    15068 ['1', '12'] 
    15069 
    15070 > select #16/Y
    15071 
    15072 92 atoms, 95 bonds, 12 residues, 1 model selected 
    15073 273 
    15074 274 
    15075 >1 
    15076 > renumber #16/Y start 274
    15077 
    15078 12 residues renumbered 
    15079 
    15080 > changechains #16/Y 4
    15081 
    15082 Chain IDs of 12 residues changed 
    15083 ['1', '5'] 
    15084 
    15085 > select #16/9
    15086 
    15087 41 atoms, 42 bonds, 5 residues, 1 model selected 
    15088 285 
    15089 286 
    15090 >1 
    15091 > renumber #16/9 start 286
    15092 
    15093 5 residues renumbered 
    15094 
    15095 > changechains #16/9 4
    15096 
    15097 Chain IDs of 5 residues changed 
    15098 ['1', '14'] 
    15099 
    15100 > select #16/c
    15101 
    15102 112 atoms, 116 bonds, 14 residues, 1 model selected 
    15103 290 
    15104 290 
    15105 >0 
    15106 
    15107 > delete #16/c:1
    15108 
    15109 > renumber #16/c start 291
    15110 
    15111 13 residues renumbered 
    15112 
    15113 > changechains #16/c 4
    15114 
    15115 Chain IDs of 13 residues changed 
    15116 ['1', '3'] 
    15117 
    15118 > select #16/Ge
    15119 
    15120 15 atoms, 14 bonds, 3 residues, 1 model selected 
    15121 303 
    15122 304 
    15123 >1 
    15124 > renumber #16/Ge start 304
    15125 
    15126 3 residues renumbered 
    15127 
    15128 > changechains #16/Ge 4
    15129 
    15130 Chain IDs of 3 residues changed 
    15131 ['1', '2'] 
    15132 
    15133 > select #16/Du
    15134 
    15135 13 atoms, 12 bonds, 2 residues, 1 model selected 
    15136 306 
    15137 309 
    15138 >3 
    15139 > renumber #16/Du start 309
    15140 
    15141 2 residues renumbered 
    15142 
    15143 > changechains #16/Du 4
    15144 
    15145 Chain IDs of 2 residues changed 
    15146 ['1', '3'] 
    15147 
    15148 > select #16/Ad
    15149 
    15150 18 atoms, 18 bonds, 3 residues, 1 model selected 
    15151 310 
    15152 311 
    15153 >1 
    15154 > renumber #16/Ad start 311
    15155 
    15156 3 residues renumbered 
    15157 
    15158 > changechains #16/Ad 4
    15159 
    15160 Chain IDs of 3 residues changed 
    15161 ['1', '7'] 
    15162 
    15163 > select #16/t
    15164 
    15165 50 atoms, 50 bonds, 7 residues, 1 model selected 
    15166 313 
    15167 314 
    15168 >1 
    15169 > renumber #16/t start 314
    15170 
    15171 7 residues renumbered 
    15172 
    15173 > changechains #16/t 4
    15174 
    15175 Chain IDs of 7 residues changed 
    15176 ['1', '32'] 
    15177 
    15178 > select #16/FU
    15179 
    15180 251 atoms, 254 bonds, 32 residues, 1 model selected 
    15181 320 
    15182 321 
    15183 >1 
    15184 > renumber #16/FU start 321
    15185 
    15186 32 residues renumbered 
    15187 
    15188 > changechains #16/FU 4
    15189 
    15190 Chain IDs of 32 residues changed 
    15191 ['1', '1'] 
    15192 
    15193 > select #16/By
    15194 
    15195 11 atoms, 10 bonds, 1 residue, 1 model selected 
    15196 352 
    15197 353 
    15198 >1 
    15199 > renumber #16/By start 353
    15200 
    15201 1 residues renumbered 
    15202 
    15203 > changechains #16/By 4
    15204 
    15205 Chain IDs of 1 residues changed 
    15206 ['1', '2'] 
    15207 
    15208 > select #16/AH
    15209 
    15210 13 atoms, 12 bonds, 2 residues, 1 model selected 
    15211 353 
    15212 354 
    15213 >1 
    15214 > renumber #16/AH start 354
    15215 
    15216 2 residues renumbered 
    15217 
    15218 > changechains #16/AH 4
    15219 
    15220 Chain IDs of 2 residues changed 
    15221 ['9', '18'] 
    15222 
    15223 > select #16/GV
    15224 
    15225 182 atoms, 182 bonds, 24 residues, 1 model selected 
    15226 355 
    15227 356 
    15228 >1 
    15229 > renumber #16/GV start 356
    15230 
    15231 24 residues renumbered 
    15232 
    15233 > changechains #16/GV 4
    15234 
    15235 Chain IDs of 24 residues changed 
    15236 ['1', '1'] 
    15237 
    15238 > select #16/Dq
    15239 
    15240 4 atoms, 3 bonds, 1 residue, 1 model selected 
    15241 379 
    15242 380 
    15243 >1 
    15244 > renumber #16/Dq start 380
    15245 
    15246 1 residues renumbered 
    15247 
    15248 > changechains #16/Dq 4
    15249 
    15250 Chain IDs of 1 residues changed 
    15251 ['1', '4'] 
    15252 
    15253 > select #16/GT
    15254 
    15255 28 atoms, 27 bonds, 4 residues, 1 model selected 
    15256 380 
    15257 381 
    15258 >1 
    15259 > renumber #16/GT start 381
    15260 
    15261 4 residues renumbered 
    15262 
    15263 > changechains #16/GT 4
    15264 
    15265 Chain IDs of 4 residues changed 
    15266 ['1', '2'] 
    15267 
    15268 > select #16/DS
    15269 
    15270 15 atoms, 15 bonds, 2 residues, 1 model selected 
    15271 384 
    15272 387 
    15273 >3 
    15274 > renumber #16/DS start 387
    15275 
    15276 2 residues renumbered 
    15277 
    15278 > changechains #16/DS 4
    15279 
    15280 Chain IDs of 2 residues changed 
    15281 ['1', '10'] 
    15282 
    15283 > select #16/Fp
    15284 
    15285 76 atoms, 78 bonds, 10 residues, 1 model selected 
    15286 388 
    15287 389 
    15288 >1 
    15289 > renumber #16/Fp start 389
    15290 
    15291 10 residues renumbered 
    15292 
    15293 > changechains #16/Fp 4
    15294 
    15295 Chain IDs of 10 residues changed 
    15296 ['1', '5'] 
    15297 
    15298 > select #16/7
    15299 
    15300 37 atoms, 37 bonds, 5 residues, 1 model selected 
    15301 398 
    15302 399 
    15303 >1 
    15304 > renumber #16/7 start 399
    15305 
    15306 5 residues renumbered 
    15307 
    15308 > changechains #16/7 4
    15309 
    15310 Chain IDs of 5 residues changed 
    15311 ['1', '2'] 
    15312 
    15313 > select #16/8
    15314 
    15315 16 atoms, 15 bonds, 2 residues, 1 model selected 
    15316 403 
    15317 404 
    15318 >1 
    15319 > renumber #16/8 start 404
    15320 
    15321 2 residues renumbered 
    15322 
    15323 > changechains #16/8 4
    15324 
    15325 Chain IDs of 2 residues changed 
    15326 ['1', '20'] 
    15327 
    15328 > select #16/FJ
    15329 
    15330 149 atoms, 150 bonds, 20 residues, 1 model selected 
    15331 405 
    15332 407 
    15333 >2 
    15334 > renumber #16/FJ start 407
    15335 
    15336 20 residues renumbered 
    15337 
    15338 > changechains #16/FJ 4
    15339 
    15340 Chain IDs of 20 residues changed 
    15341 ['1', '7'] 
    15342 
    15343 > select #16/Fu
    15344 
    15345 53 atoms, 53 bonds, 7 residues, 1 model selected 
    15346 426 
    15347 426 
    15348 >0 
    15349 
    15350 > delete #16/Fu:1
    15351 
    15352 > renumber #16/Fu start 427
    15353 
    15354 6 residues renumbered 
    15355 
    15356 > changechains #16/Fu 4
    15357 
    15358 Chain IDs of 6 residues changed 
    15359 ['1', '1'] 
    15360 
    15361 > select #16/D6
    15362 
    15363 8 atoms, 7 bonds, 1 residue, 1 model selected 
    15364 432 
    15365 469 
    15366 >37 
    15367 > renumber #16/D6 start 469
    15368 
    15369 1 residues renumbered 
    15370 
    15371 > changechains #16/D6 4
    15372 
    15373 Chain IDs of 1 residues changed 
    15374 ['1', '2'] 
    15375 
    15376 > select #16/Dl
    15377 
    15378 8 atoms, 7 bonds, 2 residues, 1 model selected 
    15379 469 
    15380 470 
    15381 >1 
    15382 > renumber #16/Dl start 470
    15383 
    15384 2 residues renumbered 
    15385 
    15386 > changechains #16/Dl 4
    15387 
    15388 Chain IDs of 2 residues changed 
    15389 ['1', '1'] 
    15390 
    15391 > select #16/DK
    15392 
    15393 9 atoms, 8 bonds, 1 residue, 1 model selected 
    15394 471 
    15395 472 
    15396 >1 
    15397 > renumber #16/DK start 472
    15398 
    15399 1 residues renumbered 
    15400 
    15401 > changechains #16/DK 4
    15402 
    15403 Chain IDs of 1 residues changed 
    15404 ['1', '1'] 
    15405 
    15406 > select #16/Dt
    15407 
    15408 9 atoms, 8 bonds, 1 residue, 1 model selected 
    15409 472 
    15410 473 
    15411 >1 
    15412 > renumber #16/Dt start 473
    15413 
    15414 1 residues renumbered 
    15415 
    15416 > changechains #16/Dt 4
    15417 
    15418 Chain IDs of 1 residues changed 
    15419 ['1', '2'] 
    15420 
    15421 > select #16/C2
    15422 
    15423 10 atoms, 9 bonds, 2 residues, 1 model selected 
    15424 473 
    15425 474 
    15426 >1 
    15427 > renumber #16/C2 start 474
    15428 
    15429 2 residues renumbered 
    15430 
    15431 > changechains #16/C2 4
    15432 
    15433 Chain IDs of 2 residues changed 
    15434 ['1', '3'] 
    15435 
    15436 > select #16/GR
    15437 
    15438 19 atoms, 18 bonds, 3 residues, 1 model selected 
    15439 475 
    15440 476 
    15441 >1 
    15442 > renumber #16/GR start 476
    15443 
    15444 3 residues renumbered 
    15445 
    15446 > changechains #16/GR 4
    15447 
    15448 Chain IDs of 3 residues changed 
    15449 ['11', '32'] 
    15450 
    15451 > select #16/FN
    15452 
    15453 518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected 
    15454 478 
    15455 435 
    15456 >-43 
    15457 
    15458 > delete #16/FN:44
    15459 
    15460 > delete #16/FN:43
    15461 
    15462 > delete #16/FN:42
    15463 
    15464 > delete #16/FN:41
    15465 
    15466 > delete #16/FN:40
    15467 
    15468 > delete #16/FN:39
    15469 
    15470 > delete #16/FN:38
    15471 
    15472 > delete #16/FN:37
    15473 
    15474 > delete #16/FN:36
    15475 
    15476 > delete #16/FN:35
    15477 
    15478 > delete #16/FN:34
    15479 
    15480 > delete #16/FN:33
    15481 
    15482 > delete #16/FN:32
    15483 
    15484 > delete #16/FN:31
    15485 
    15486 > delete #16/FN:30
    15487 
    15488 > delete #16/FN:29
    15489 
    15490 > delete #16/FN:28
    15491 
    15492 > delete #16/FN:27
    15493 
    15494 > delete #16/FN:26
    15495 
    15496 > delete #16/FN:25
    15497 
    15498 > delete #16/FN:24
    15499 
    15500 > delete #16/FN:23
    15501 
    15502 > delete #16/FN:22
    15503 
    15504 > delete #16/FN:21
    15505 
    15506 > delete #16/FN:20
    15507 
    15508 > delete #16/FN:19
    15509 
    15510 > delete #16/FN:18
    15511 
    15512 > delete #16/FN:17
    15513 
    15514 > delete #16/FN:16
    15515 
    15516 > delete #16/FN:15
    15517 
    15518 > delete #16/FN:14
    15519 
    15520 > delete #16/FN:13
    15521 
    15522 > delete #16/FN:12
    15523 
    15524 > delete #16/FN:11
    15525 
    15526 > delete #16/FN:10
    15527 
    15528 > delete #16/FN:9
    15529 
    15530 > delete #16/FN:8
    15531 
    15532 > delete #16/FN:7
    15533 
    15534 > delete #16/FN:6
    15535 
    15536 > delete #16/FN:5
    15537 
    15538 > delete #16/FN:4
    15539 
    15540 > delete #16/FN:3
    15541 
    15542 > delete #16/FN:2
    15543 
    15544 > delete #16/FN:1
    15545 
    15546 > renumber #16/FN start 479
    15547 
    15548 34 residues renumbered 
    15549 
    15550 > changechains #16/FN 4
    15551 
    15552 Chain IDs of 34 residues changed 
    15553 ['1', '12'] 
    15554 
    15555 > select #16/FK
    15556 
    15557 87 atoms, 88 bonds, 12 residues, 1 model selected 
    15558 502 
    15559 511 
    15560 >9 
    15561 > renumber #16/FK start 511
    15562 
    15563 12 residues renumbered 
    15564 
    15565 > changechains #16/FK 4
    15566 
    15567 Traceback (most recent call last): 
    15568 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    15569 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    15570 line 190, in   
    15571 run(session, f'changechains {outModel}/{hC} {firstChain}') 
    15572 File
    15573 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15574 packages/chimerax/core/commands/run.py", line 49, in run 
    15575 results = command.run(text, log=log, return_json=return_json) 
    15576 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15577 File
    15578 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15579 packages/chimerax/core/commands/cli.py", line 3213, in run 
    15580 result = ci.function(session, **kw_args) 
    15581 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15582 File
    15583 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15584 packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains 
    15585 raise UserError("Proposed chainID change conflicts with existing residue %s" %
    15586 r) 
    15587 chimerax.core.errors.UserError: Proposed chainID change conflicts with
    15588 existing residue renamedAndRenumberedModel #16/4 ALA 511 
    15589  
    15590 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    15591 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    15592 
    15593 > hide #!15 models
    15594 
    15595 > close #16
    15596 
    15597 > show #!15 models
    15598 
    15599 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    15600 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    15601 > #15 alignmentsMod1Mod.txt
    15602 
    15603 ['1', '8'] 
    15604 ['1', '8'] 
    15605 ['11'] 
    15606 ['1', '1'] 
    15607 ['11'] 
    15608 ['1', '1'] 
    15609 ['1', '3'] 
    15610 ['1', '3'] 
    15611 ['11'] 
    15612 ['1', '1'] 
    15613 ['1', '4'] 
    15614 ['1', '4'] 
    15615 ['1', '15'] 
    15616 ['1', '15'] 
    15617 ['11'] 
    15618 ['1', '1'] 
    15619 ['1', '9'] 
    15620 ['1', '9'] 
    15621 ['1', '4'] 
    15622 ['1', '4'] 
    15623 ['1', '28'] 
    15624 ['1', '28'] 
    15625 ['1', '15'] 
    15626 ['1', '15'] 
    15627 ['7', '15'] 
    15628 ['7', '15'] 
    15629 ['2', '44'] 
    15630 ['2', '44'] 
    15631 ['1', '7'] 
    15632 ['1', '7'] 
    15633 ['1', '8'] 
    15634 ['1', '8'] 
    15635 ['1', '13'] 
    15636 ['1', '13'] 
    15637 ['11'] 
    15638 ['1', '1'] 
    15639 ['1', '31'] 
    15640 ['1', '31'] 
    15641 ['12'] 
    15642 ['1', '2'] 
    15643 ['6', '22'] 
    15644 ['6', '22'] 
    15645 ['5', '21'] 
    15646 ['5', '21'] 
    15647 ['3', '140'] 
    15648 ['3', '140'] 
    15649 ['1', '3'] 
    15650 ['1', '3'] 
    15651 ['1', '8'] 
    15652 ['1', '8'] 
    15653 ['2', '18'] 
    15654 ['2', '18'] 
    15655 ['1', '7'] 
    15656 ['1', '7'] 
    15657 ['7', '12'] 
    15658 ['7', '12'] 
    15659 ['1', '10'] 
    15660 ['1', '10'] 
    15661 ['12'] 
    15662 ['1', '2'] 
    15663 ['1', '10'] 
    15664 ['1', '10'] 
    15665 ['4', '63'] 
    15666 ['4', '63'] 
    15667 ['9', '11'] 
    15668 ['9', '11'] 
    15669 ['11'] 
    15670 ['1', '1'] 
    15671 ['1', '5'] 
    15672 ['1', '5'] 
    15673 ['5', '33'] 
    15674 ['5', '33'] 
    15675 ['1', '4'] 
    15676 ['1', '4'] 
    15677 ['1', '74'] 
    15678 ['1', '74'] 
    15679 ['3', '18'] 
    15680 ['3', '18'] 
    15681 ['2', '22'] 
    15682 ['2', '22'] 
    15683 ['1', '4'] 
    15684 ['1', '4'] 
    15685 ['1', '3'] 
    15686 ['1', '3'] 
    15687 ['2', '81'] 
    15688 ['2', '81'] 
    15689 ['1', '8'] 
    15690 ['1', '8'] 
    15691 ['1', '5'] 
    15692 ['1', '5'] 
    15693 ['14', '47'] 
    15694 ['14', '47'] 
    15695 ['1', '5'] 
    15696 ['1', '5'] 
    15697 ['1', '3'] 
    15698 ['1', '3'] 
    15699 ['11'] 
    15700 ['1', '1'] 
    15701 ['1', '7'] 
    15702 ['1', '7'] 
    15703 ['1', '14'] 
    15704 ['1', '14'] 
    15705 ['1', '5'] 
    15706 ['1', '5'] 
    15707 ['1', '4'] 
    15708 ['1', '4'] 
    15709 ['1', '7'] 
    15710 ['1', '7'] 
    15711 ['1', '14'] 
    15712 ['1', '14'] 
    15713 ['1', '25'] 
    15714 ['1', '25'] 
    15715 ['1', '20'] 
    15716 ['1', '20'] 
    15717 ['1', '8'] 
    15718 ['1', '8'] 
    15719 ['11'] 
    15720 ['1', '1'] 
    15721 ['12'] 
    15722 ['1', '2'] 
    15723 ['12'] 
    15724 ['1', '2'] 
    15725 ['1', '18'] 
    15726 ['1', '18'] 
    15727 ['1', '70'] 
    15728 ['1', '70'] 
    15729 ['12'] 
    15730 ['1', '2'] 
    15731 ['12'] 
    15732 ['1', '2'] 
    15733 ['1', '12'] 
    15734 ['1', '12'] 
    15735 ['1', '5'] 
    15736 ['1', '5'] 
    15737 ['1', '14'] 
    15738 ['1', '14'] 
    15739 ['1', '3'] 
    15740 ['1', '3'] 
    15741 ['12'] 
    15742 ['1', '2'] 
    15743 ['1', '3'] 
    15744 ['1', '3'] 
    15745 ['1', '7'] 
    15746 ['1', '7'] 
    15747 ['1', '32'] 
    15748 ['1', '32'] 
    15749 ['11'] 
    15750 ['1', '1'] 
    15751 ['12'] 
    15752 ['1', '2'] 
    15753 ['9', '18'] 
    15754 ['9', '18'] 
    15755 ['11'] 
    15756 ['1', '1'] 
    15757 ['1', '4'] 
    15758 ['1', '4'] 
    15759 ['12'] 
    15760 ['1', '2'] 
    15761 ['1', '10'] 
    15762 ['1', '10'] 
    15763 ['1', '5'] 
    15764 ['1', '5'] 
    15765 ['12'] 
    15766 ['1', '2'] 
    15767 ['1', '20'] 
    15768 ['1', '20'] 
    15769 ['1', '7'] 
    15770 ['1', '7'] 
    15771 ['11'] 
    15772 ['1', '1'] 
    15773 ['12'] 
    15774 ['1', '2'] 
    15775 ['11'] 
    15776 ['1', '1'] 
    15777 ['11'] 
    15778 ['1', '1'] 
    15779 ['12'] 
    15780 ['1', '2'] 
    15781 ['1', '3'] 
    15782 ['1', '3'] 
    15783 ['1', '12'] 
    15784 ['1', '12'] 
    15785 ['1', '3'] 
    15786 ['1', '3'] 
    15787 ['2', '15'] 
    15788 ['2', '15'] 
    15789 ['11'] 
    15790 ['1', '1'] 
    15791 ['11'] 
    15792 ['1', '1'] 
    15793 ['1', '153'] 
    15794 ['1', '153'] 
    15795 ['11'] 
    15796 ['1', '1'] 
    15797 ['1', '39'] 
    15798 ['1', '39'] 
    15799 ['1', '27'] 
    15800 ['1', '27'] 
    15801 ['1', '37'] 
    15802 ['1', '37'] 
    15803 ['12'] 
    15804 ['1', '2'] 
    15805 ['11'] 
    15806 ['1', '1'] 
    15807 ['11'] 
    15808 ['1', '1'] 
    15809 ['1', '56'] 
    15810 ['1', '56'] 
    15811 ['1', '9'] 
    15812 ['1', '9'] 
    15813 ['1', '4'] 
    15814 ['1', '4'] 
    15815 ['12'] 
    15816 ['1', '2'] 
    15817 ['1', '3'] 
    15818 ['1', '3'] 
    15819 ['12'] 
    15820 ['1', '2'] 
    15821 ['11'] 
    15822 ['1', '1'] 
    15823 ['1', '10'] 
    15824 ['1', '10'] 
    15825 ['1', '4'] 
    15826 ['1', '4'] 
    15827 ['11'] 
    15828 ['1', '1'] 
    15829 ['12'] 
    15830 ['1', '2'] 
    15831 ['1', '30'] 
    15832 ['1', '30'] 
    15833 ['3', '45'] 
    15834 ['3', '45'] 
    15835 ['1', '9'] 
    15836 ['1', '9'] 
    15837 ['2', '4'] 
    15838 ['2', '4'] 
    15839 ['12'] 
    15840 ['1', '2'] 
    15841 ['1', '59'] 
    15842 ['1', '59'] 
    15843 ['1', '13'] 
    15844 ['1', '13'] 
    15845 ['1', '34'] 
    15846 ['1', '34'] 
    15847 ['1', '5'] 
    15848 ['1', '5'] 
    15849 ['3', '25'] 
    15850 ['3', '25'] 
    15851 ['1', '4'] 
    15852 ['1', '4'] 
    15853 ['1', '3'] 
    15854 ['1', '3'] 
    15855 ['6', '20'] 
    15856 ['6', '20'] 
    15857 ['1', '11'] 
    15858 ['1', '11'] 
    15859 ['3', '39'] 
    15860 ['3', '39'] 
    15861 ['1', '27'] 
    15862 ['1', '27'] 
    15863 ['1', '21'] 
    15864 ['1', '21'] 
    15865 ['11'] 
    15866 ['1', '1'] 
    15867 ['1', '4'] 
    15868 ['1', '4'] 
    15869 ['2', '33'] 
    15870 ['2', '33'] 
    15871 ['11'] 
    15872 ['1', '1'] 
    15873 ['11'] 
    15874 ['1', '1'] 
    15875 ['12'] 
    15876 ['1', '2'] 
    15877 ['11'] 
    15878 ['1', '1'] 
    15879 ['11'] 
    15880 ['1', '1'] 
    15881 ['1', '8'] 
    15882 ['1', '8'] 
    15883 LtaP35.1590.mRNA_A 
    15884 LtaP35.1450.mRNA_A 
    15885 LtaP07.0060.mRNA_A 
    15886 LtaP32.3800.mRNA_A 
    15887 LtaP13.0770.mRNA_A 
    15888 sp|P14548.2|CYB_LEITA_A 
    15889 LtaP35.0210.mRNA_A 
    15890 GET91263.1_A 
    15891 LtaP35.0250.mRNA_A 
    15892 GET89654.1_A 
    15893 
    15894 > combine #15 close false name renamedAndRenumberedModel
    15895 
    15896 Renumering chain LtaP35.1590.mRNA_A 
    15897 ['1', '8'] 
    15898 
    15899 > select #16/GC
    15900 
    15901 66 atoms, 66 bonds, 8 residues, 1 model selected 
    15902 0 
    15903 17 
    15904 >17 
    15905 > renumber #16/GC start 17
    15906 
    15907 8 residues renumbered 
    15908 ['1', '1'] 
    15909 
    15910 > select #16/Bd
    15911 
    15912 4 atoms, 3 bonds, 1 residue, 1 model selected 
    15913 24 
    15914 25 
    15915 >1 
    15916 > renumber #16/Bd start 25
    15917 
    15918 1 residues renumbered 
    15919 
    15920 > changechains #16/Bd GC
    15921 
    15922 Chain IDs of 1 residues changed 
    15923 ['1', '1'] 
    15924 
    15925 > select #16/Ca
    15926 
    15927 4 atoms, 3 bonds, 1 residue, 1 model selected 
    15928 25 
    15929 26 
    15930 >1 
    15931 > renumber #16/Ca start 26
    15932 
    15933 1 residues renumbered 
    15934 
    15935 > changechains #16/Ca GC
    15936 
    15937 Chain IDs of 1 residues changed 
    15938 ['1', '3'] 
    15939 
    15940 > select #16/AP
    15941 
    15942 19 atoms, 19 bonds, 3 residues, 1 model selected 
    15943 26 
    15944 27 
    15945 >1 
    15946 > renumber #16/AP start 27
    15947 
    15948 3 residues renumbered 
    15949 
    15950 > changechains #16/AP GC
    15951 
    15952 Chain IDs of 3 residues changed 
    15953 ['1', '1'] 
    15954 
    15955 > select #16/BN
    15956 
    15957 6 atoms, 5 bonds, 1 residue, 1 model selected 
    15958 29 
    15959 30 
    15960 >1 
    15961 > renumber #16/BN start 30
    15962 
    15963 1 residues renumbered 
    15964 
    15965 > changechains #16/BN GC
    15966 
    15967 Chain IDs of 1 residues changed 
    15968 ['1', '4'] 
    15969 
    15970 > select #16/FF
    15971 
    15972 32 atoms, 32 bonds, 4 residues, 1 model selected 
    15973 30 
    15974 31 
    15975 >1 
    15976 > renumber #16/FF start 31
    15977 
    15978 4 residues renumbered 
    15979 
    15980 > changechains #16/FF GC
    15981 
    15982 Chain IDs of 4 residues changed 
    15983 ['1', '15'] 
    15984 
    15985 > select #16/Fo
    15986 
    15987 103 atoms, 106 bonds, 15 residues, 1 model selected 
    15988 34 
    15989 35 
    15990 >1 
    15991 > renumber #16/Fo start 35
    15992 
    15993 15 residues renumbered 
    15994 
    15995 > changechains #16/Fo GC
    15996 
    15997 Chain IDs of 15 residues changed 
    15998 ['1', '1'] 
    15999 
    16000 > select #16/Cy
    16001 
    16002 8 atoms, 7 bonds, 1 residue, 1 model selected 
    16003 49 
    16004 50 
    16005 >1 
    16006 > renumber #16/Cy start 50
    16007 
    16008 1 residues renumbered 
    16009 
    16010 > changechains #16/Cy GC
    16011 
    16012 Chain IDs of 1 residues changed 
    16013 ['1', '9'] 
    16014 
    16015 > select #16/EY
    16016 
    16017 66 atoms, 67 bonds, 9 residues, 1 model selected 
    16018 50 
    16019 51 
    16020 >1 
    16021 > renumber #16/EY start 51
    16022 
    16023 9 residues renumbered 
    16024 
    16025 > changechains #16/EY GC
    16026 
    16027 Chain IDs of 9 residues changed 
    16028 ['1', '4'] 
    16029 
    16030 > select #16/FV
    16031 
    16032 24 atoms, 23 bonds, 4 residues, 1 model selected 
    16033 59 
    16034 60 
    16035 >1 
    16036 > renumber #16/FV start 60
    16037 
    16038 4 residues renumbered 
    16039 
    16040 > changechains #16/FV GC
    16041 
    16042 Chain IDs of 4 residues changed 
    16043 ['1', '28'] 
    16044 
    16045 > select #16/Ey
    16046 
    16047 210 atoms, 213 bonds, 28 residues, 1 model selected 
    16048 63 
    16049 64 
    16050 >1 
    16051 > renumber #16/Ey start 64
    16052 
    16053 28 residues renumbered 
    16054 
    16055 > changechains #16/Ey GC
    16056 
    16057 Chain IDs of 28 residues changed 
    16058 ['1', '15'] 
    16059 
    16060 > select #16/K
    16061 
    16062 102 atoms, 102 bonds, 15 residues, 1 model selected 
    16063 91 
    16064 92 
    16065 >1 
    16066 > renumber #16/K start 92
    16067 
    16068 15 residues renumbered 
    16069 
    16070 > changechains #16/K GC
    16071 
    16072 Chain IDs of 15 residues changed 
    16073 ['7', '15'] 
    16074 
    16075 > select #16/L
    16076 
    16077 184 atoms, 187 bonds, 22 residues, 1 model selected 
    16078 106 
    16079 107 
    16080 >1 
    16081 > renumber #16/L start 107
    16082 
    16083 22 residues renumbered 
    16084 
    16085 > changechains #16/L GC
    16086 
    16087 Chain IDs of 22 residues changed 
    16088 ['2', '44'] 
    16089 
    16090 > select #16/Ee
    16091 
    16092 355 atoms, 363 bonds, 44 residues, 1 model selected 
    16093 128 
    16094 129 
    16095 >1 
    16096 > renumber #16/Ee start 129
    16097 
    16098 44 residues renumbered 
    16099 
    16100 > changechains #16/Ee GC
    16101 
    16102 Chain IDs of 44 residues changed 
    16103 Renumering chain LtaP35.1450.mRNA_A 
    16104 ['1', '7'] 
    16105 
    16106 > select #16/Gc
    16107 
    16108 52 atoms, 52 bonds, 7 residues, 1 model selected 
    16109 0 
    16110 2 
    16111 >2 
    16112 > renumber #16/Gc start 2
    16113 
    16114 7 residues renumbered 
    16115 ['1', '8'] 
    16116 
    16117 > select #16/Ex
    16118 
    16119 55 atoms, 56 bonds, 8 residues, 1 model selected 
    16120 8 
    16121 10 
    16122 >2 
    16123 > renumber #16/Ex start 10
    16124 
    16125 8 residues renumbered 
    16126 
    16127 > changechains #16/Ex Gc
    16128 
    16129 Chain IDs of 8 residues changed 
    16130 ['1', '13'] 
    16131 
    16132 > select #16/E6
    16133 
    16134 98 atoms, 100 bonds, 13 residues, 1 model selected 
    16135 17 
    16136 18 
    16137 >1 
    16138 > renumber #16/E6 start 18
    16139 
    16140 13 residues renumbered 
    16141 
    16142 > changechains #16/E6 Gc
    16143 
    16144 Chain IDs of 13 residues changed 
    16145 ['1', '1'] 
    16146 
    16147 > select #16/Ai
    16148 
    16149 11 atoms, 10 bonds, 1 residue, 1 model selected 
    16150 30 
    16151 31 
    16152 >1 
    16153 > renumber #16/Ai start 31
    16154 
    16155 1 residues renumbered 
    16156 
    16157 > changechains #16/Ai Gc
    16158 
    16159 Chain IDs of 1 residues changed 
    16160 ['1', '31'] 
    16161 
    16162 > select #16/0
    16163 
    16164 233 atoms, 235 bonds, 31 residues, 1 model selected 
    16165 31 
    16166 32 
    16167 >1 
    16168 > renumber #16/0 start 32
    16169 
    16170 31 residues renumbered 
    16171 
    16172 > changechains #16/0 Gc
    16173 
    16174 Chain IDs of 31 residues changed 
    16175 ['1', '2'] 
    16176 
    16177 > select #16/U
    16178 
    16179 11 atoms, 10 bonds, 2 residues, 1 model selected 
    16180 62 
    16181 63 
    16182 >1 
    16183 > renumber #16/U start 63
    16184 
    16185 2 residues renumbered 
    16186 
    16187 > changechains #16/U Gc
    16188 
    16189 Chain IDs of 2 residues changed 
    16190 ['6', '22'] 
    16191 
    16192 > select #16/d
    16193 
    16194 176 atoms, 182 bonds, 22 residues, 1 model selected 
    16195 64 
    16196 65 
    16197 >1 
    16198 > renumber #16/d start 65
    16199 
    16200 22 residues renumbered 
    16201 
    16202 > changechains #16/d Gc
    16203 
    16204 Chain IDs of 22 residues changed 
    16205 ['5', '21'] 
    16206 
    16207 > select #16/EV
    16208 
    16209 161 atoms, 160 bonds, 21 residues, 1 model selected 
    16210 86 
    16211 87 
    16212 >1 
    16213 > renumber #16/EV start 87
    16214 
    16215 21 residues renumbered 
    16216 
    16217 > changechains #16/EV Gc
    16218 
    16219 Chain IDs of 21 residues changed 
    16220 
    16221 > delete #16/Ew:132
    16222 
    16223 > renumber #16/Ew:133-9999999 start 132
    16224 
    16225 11 residues renumbered 
    16226 ['3', '139'] 
    16227 
    16228 > select #16/Ew
    16229 
    16230 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    16231 107 
    16232 108 
    16233 >1 
    16234 > renumber #16/Ew start 108
    16235 
    16236 142 residues renumbered 
    16237 
    16238 > changechains #16/Ew Gc
    16239 
    16240 Chain IDs of 142 residues changed 
    16241 ['1', '3'] 
    16242 
    16243 > select #16/GO
    16244 
    16245 18 atoms, 18 bonds, 3 residues, 1 model selected 
    16246 249 
    16247 250 
    16248 >1 
    16249 > renumber #16/GO start 250
    16250 
    16251 3 residues renumbered 
    16252 
    16253 > changechains #16/GO Gc
    16254 
    16255 Chain IDs of 3 residues changed 
    16256 ['1', '8'] 
    16257 
    16258 > select #16/Z
    16259 
    16260 69 atoms, 71 bonds, 8 residues, 1 model selected 
    16261 252 
    16262 253 
    16263 >1 
    16264 > renumber #16/Z start 253
    16265 
    16266 8 residues renumbered 
    16267 
    16268 > changechains #16/Z Gc
    16269 
    16270 Chain IDs of 8 residues changed 
    16271 ['2', '18'] 
    16272 
    16273 > select #16/ES
    16274 
    16275 163 atoms, 164 bonds, 18 residues, 1 model selected 
    16276 260 
    16277 262 
    16278 >2 
    16279 > renumber #16/ES start 262
    16280 
    16281 18 residues renumbered 
    16282 
    16283 > changechains #16/ES Gc
    16284 
    16285 Chain IDs of 18 residues changed 
    16286 ['1', '7'] 
    16287 
    16288 > select #16/Fc
    16289 
    16290 40 atoms, 41 bonds, 7 residues, 1 model selected 
    16291 279 
    16292 282 
    16293 >3 
    16294 > renumber #16/Fc start 282
    16295 
    16296 7 residues renumbered 
    16297 
    16298 > changechains #16/Fc Gc
    16299 
    16300 Chain IDs of 7 residues changed 
    16301 ['7', '12'] 
    16302 
    16303 > select #16/Fa
    16304 
    16305 177 atoms, 179 bonds, 24 residues, 1 model selected 
    16306 288 
    16307 289 
    16308 >1 
    16309 > renumber #16/Fa start 289
    16310 
    16311 24 residues renumbered 
    16312 
    16313 > changechains #16/Fa Gc
    16314 
    16315 Chain IDs of 24 residues changed 
    16316 ['1', '10'] 
    16317 
    16318 > select #16/2
    16319 
    16320 81 atoms, 83 bonds, 10 residues, 1 model selected 
    16321 312 
    16322 314 
    16323 >2 
    16324 > renumber #16/2 start 314
    16325 
    16326 10 residues renumbered 
    16327 
    16328 > changechains #16/2 Gc
    16329 
    16330 Chain IDs of 10 residues changed 
    16331 ['1', '2'] 
    16332 
    16333 > select #16/E
    16334 
    16335 16 atoms, 16 bonds, 2 residues, 1 model selected 
    16336 323 
    16337 326 
    16338 >3 
    16339 > renumber #16/E start 326
    16340 
    16341 2 residues renumbered 
    16342 
    16343 > changechains #16/E Gc
    16344 
    16345 Chain IDs of 2 residues changed 
    16346 ['1', '10'] 
    16347 
    16348 > select #16/Ff
    16349 
    16350 75 atoms, 76 bonds, 10 residues, 1 model selected 
    16351 327 
    16352 328 
    16353 >1 
    16354 > renumber #16/Ff start 328
    16355 
    16356 10 residues renumbered 
    16357 
    16358 > changechains #16/Ff Gc
    16359 
    16360 Chain IDs of 10 residues changed 
    16361 ['4', '63'] 
    16362 
    16363 > select #16/E2
    16364 
    16365 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    16366 337 
    16367 338 
    16368 >1 
    16369 > renumber #16/E2 start 338
    16370 
    16371 132 residues renumbered 
    16372 
    16373 > changechains #16/E2 Gc
    16374 
    16375 Chain IDs of 132 residues changed 
    16376 ['9', '11'] 
    16377 
    16378 > select #16/W
    16379 
    16380 182 atoms, 189 bonds, 20 residues, 1 model selected 
    16381 469 
    16382 470 
    16383 >1 
    16384 > renumber #16/W start 470
    16385 
    16386 20 residues renumbered 
    16387 
    16388 > changechains #16/W Gc
    16389 
    16390 Chain IDs of 20 residues changed 
    16391 ['1', '1'] 
    16392 
    16393 > select #16/BM
    16394 
    16395 7 atoms, 6 bonds, 1 residue, 1 model selected 
    16396 489 
    16397 490 
    16398 >1 
    16399 > renumber #16/BM start 490
    16400 
    16401 1 residues renumbered 
    16402 
    16403 > changechains #16/BM Gc
    16404 
    16405 Chain IDs of 1 residues changed 
    16406 Renumering chain LtaP07.0060.mRNA_A 
    16407 ['1', '5'] 
    16408 
    16409 > select #16/A
    16410 
    16411 32 atoms, 33 bonds, 5 residues, 1 model selected 
    16412 0 
    16413 5 
    16414 >5 
    16415 > renumber #16/A start 5
    16416 
    16417 5 residues renumbered 
    16418 ['5', '33'] 
    16419 
    16420 > select #16/Fd
    16421 
    16422 314 atoms, 324 bonds, 36 residues, 1 model selected 
    16423 9 
    16424 10 
    16425 >1 
    16426 > renumber #16/Fd start 10
    16427 
    16428 36 residues renumbered 
    16429 
    16430 > changechains #16/Fd A
    16431 
    16432 Chain IDs of 36 residues changed 
    16433 ['1', '4'] 
    16434 
    16435 > select #16/Ef
    16436 
    16437 24 atoms, 23 bonds, 4 residues, 1 model selected 
    16438 45 
    16439 46 
    16440 >1 
    16441 > renumber #16/Ef start 46
    16442 
    16443 4 residues renumbered 
    16444 
    16445 > changechains #16/Ef A
    16446 
    16447 Chain IDs of 4 residues changed 
    16448 ['1', '74'] 
    16449 
    16450 > select #16/Eg
    16451 
    16452 577 atoms, 589 bonds, 74 residues, 1 model selected 
    16453 49 
    16454 50 
    16455 >1 
    16456 > renumber #16/Eg start 50
    16457 
    16458 74 residues renumbered 
    16459 
    16460 > changechains #16/Eg A
    16461 
    16462 Chain IDs of 74 residues changed 
    16463 ['3', '18'] 
    16464 
    16465 > select #16/j
    16466 
    16467 160 atoms, 162 bonds, 22 residues, 1 model selected 
    16468 123 
    16469 124 
    16470 >1 
    16471 > renumber #16/j start 124
    16472 
    16473 22 residues renumbered 
    16474 
    16475 > changechains #16/j A
    16476 
    16477 Chain IDs of 22 residues changed 
    16478 
    16479 > renumber #16/Ei:7-9999999 start 8
    16480 
    16481 19 residues renumbered 
    16482 
    16483 > ~bond #16/Ei:6@C #16/Ei:8@N
    16484 
    16485 ['2', '21'] 
    16486 
    16487 > select #16/Ei
    16488 
    16489 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    16490 145 
    16491 145 
    16492 >0 
    16493 
    16494 > delete #16/Ei:1
    16495 
    16496 > renumber #16/Ei start 146
    16497 
    16498 24 residues renumbered 
    16499 
    16500 > changechains #16/Ei A
    16501 
    16502 Chain IDs of 24 residues changed 
    16503 ['1', '4'] 
    16504 
    16505 > select #16/Bi
    16506 
    16507 23 atoms, 22 bonds, 4 residues, 1 model selected 
    16508 170 
    16509 168 
    16510 >-2 
    16511 
    16512 > delete #16/Bi:3
    16513 
    16514 > delete #16/Bi:2
    16515 
    16516 > delete #16/Bi:1
    16517 
    16518 > renumber #16/Bi start 171
    16519 
    16520 1 residues renumbered 
    16521 
    16522 > changechains #16/Bi A
    16523 
    16524 Chain IDs of 1 residues changed 
    16525 ['1', '3'] 
    16526 
    16527 > select #16/GM
    16528 
    16529 21 atoms, 20 bonds, 3 residues, 1 model selected 
    16530 171 
    16531 171 
    16532 >0 
    16533 
    16534 > delete #16/GM:1
    16535 
    16536 > renumber #16/GM start 172
    16537 
    16538 2 residues renumbered 
    16539 
    16540 > changechains #16/GM A
    16541 
    16542 Chain IDs of 2 residues changed 
    16543 ['2', '81'] 
    16544 
    16545 > select #16/E8
    16546 
    16547 695 atoms, 717 bonds, 86 residues, 1 model selected 
    16548 173 
    16549 174 
    16550 >1 
    16551 > renumber #16/E8 start 174
    16552 
    16553 86 residues renumbered 
    16554 
    16555 > changechains #16/E8 A
    16556 
    16557 Chain IDs of 86 residues changed 
    16558 Renumering chain LtaP32.3800.mRNA_A 
    16559 ['1', '8'] 
    16560 
    16561 > select #16/N
    16562 
    16563 66 atoms, 69 bonds, 8 residues, 1 model selected 
    16564 0 
    16565 34 
    16566 >34 
    16567 > renumber #16/N start 34
    16568 
    16569 8 residues renumbered 
    16570 ['1', '5'] 
    16571 
    16572 > select #16/GZ
    16573 
    16574 35 atoms, 34 bonds, 5 residues, 1 model selected 
    16575 41 
    16576 42 
    16577 >1 
    16578 > renumber #16/GZ start 42
    16579 
    16580 5 residues renumbered 
    16581 
    16582 > changechains #16/GZ N
    16583 
    16584 Chain IDs of 5 residues changed 
    16585 ['14', '47'] 
    16586 
    16587 > select #16/FT
    16588 
    16589 810 atoms, 833 bonds, 101 residues, 1 model selected 
    16590 46 
    16591 47 
    16592 >1 
    16593 > renumber #16/FT start 47
    16594 
    16595 101 residues renumbered 
    16596 
    16597 > changechains #16/FT N
    16598 
    16599 Chain IDs of 101 residues changed 
    16600 Renumering chain LtaP13.0770.mRNA_A 
    16601 ['1', '5'] 
    16602 
    16603 > select #16/4
    16604 
    16605 50 atoms, 51 bonds, 5 residues, 1 model selected 
    16606 0 
    16607 25 
    16608 >25 
    16609 > renumber #16/4 start 25
    16610 
    16611 5 residues renumbered 
    16612 ['1', '3'] 
    16613 
    16614 > select #16/D
    16615 
    16616 20 atoms, 20 bonds, 3 residues, 1 model selected 
    16617 29 
    16618 30 
    16619 >1 
    16620 > renumber #16/D start 30
    16621 
    16622 3 residues renumbered 
    16623 
    16624 > changechains #16/D 4
    16625 
    16626 Chain IDs of 3 residues changed 
    16627 ['1', '1'] 
    16628 
    16629 > select #16/CN
    16630 
    16631 6 atoms, 5 bonds, 1 residue, 1 model selected 
    16632 32 
    16633 33 
    16634 >1 
    16635 > renumber #16/CN start 33
    16636 
    16637 1 residues renumbered 
    16638 
    16639 > changechains #16/CN 4
    16640 
    16641 Chain IDs of 1 residues changed 
    16642 ['1', '7'] 
    16643 
    16644 > select #16/FG
    16645 
    16646 48 atoms, 48 bonds, 7 residues, 1 model selected 
    16647 33 
    16648 34 
    16649 >1 
    16650 > renumber #16/FG start 34
    16651 
    16652 7 residues renumbered 
    16653 
    16654 > changechains #16/FG 4
    16655 
    16656 Chain IDs of 7 residues changed 
    16657 ['1', '14'] 
    16658 
    16659 > select #16/GH
    16660 
    16661 92 atoms, 92 bonds, 14 residues, 1 model selected 
    16662 40 
    16663 57 
    16664 >17 
    16665 > renumber #16/GH start 57
    16666 
    16667 14 residues renumbered 
    16668 
    16669 > changechains #16/GH 4
    16670 
    16671 Chain IDs of 14 residues changed 
    16672 ['1', '5'] 
    16673 
    16674 > select #16/GW
    16675 
    16676 46 atoms, 46 bonds, 5 residues, 1 model selected 
    16677 70 
    16678 71 
    16679 >1 
    16680 > renumber #16/GW start 71
    16681 
    16682 5 residues renumbered 
    16683 
    16684 > changechains #16/GW 4
    16685 
    16686 Chain IDs of 5 residues changed 
    16687 ['1', '4'] 
    16688 
    16689 > select #16/Fj
    16690 
    16691 24 atoms, 23 bonds, 4 residues, 1 model selected 
    16692 75 
    16693 76 
    16694 >1 
    16695 > renumber #16/Fj start 76
    16696 
    16697 4 residues renumbered 
    16698 
    16699 > changechains #16/Fj 4
    16700 
    16701 Chain IDs of 4 residues changed 
    16702 ['1', '7'] 
    16703 
    16704 > select #16/E4
    16705 
    16706 48 atoms, 48 bonds, 7 residues, 1 model selected 
    16707 79 
    16708 80 
    16709 >1 
    16710 > renumber #16/E4 start 80
    16711 
    16712 7 residues renumbered 
    16713 
    16714 > changechains #16/E4 4
    16715 
    16716 Chain IDs of 7 residues changed 
    16717 ['1', '14'] 
    16718 
    16719 > select #16/Er
    16720 
    16721 99 atoms, 102 bonds, 14 residues, 1 model selected 
    16722 86 
    16723 87 
    16724 >1 
    16725 > renumber #16/Er start 87
    16726 
    16727 14 residues renumbered 
    16728 
    16729 > changechains #16/Er 4
    16730 
    16731 Chain IDs of 14 residues changed 
    16732 ['1', '25'] 
    16733 
    16734 > select #16/ER
    16735 
    16736 208 atoms, 211 bonds, 25 residues, 1 model selected 
    16737 100 
    16738 101 
    16739 >1 
    16740 > renumber #16/ER start 101
    16741 
    16742 25 residues renumbered 
    16743 
    16744 > changechains #16/ER 4
    16745 
    16746 Chain IDs of 25 residues changed 
    16747 ['1', '20'] 
    16748 
    16749 > select #16/Fz
    16750 
    16751 146 atoms, 147 bonds, 20 residues, 1 model selected 
    16752 125 
    16753 124 
    16754 >-1 
    16755 
    16756 > delete #16/Fz:2
    16757 
    16758 > delete #16/Fz:1
    16759 
    16760 > renumber #16/Fz start 126
    16761 
    16762 18 residues renumbered 
    16763 
    16764 > changechains #16/Fz 4
    16765 
    16766 Chain IDs of 18 residues changed 
    16767 ['1', '8'] 
    16768 
    16769 > select #16/p
    16770 
    16771 62 atoms, 62 bonds, 8 residues, 1 model selected 
    16772 143 
    16773 144 
    16774 >1 
    16775 > renumber #16/p start 144
    16776 
    16777 8 residues renumbered 
    16778 
    16779 > changechains #16/p 4
    16780 
    16781 Chain IDs of 8 residues changed 
    16782 ['1', '1'] 
    16783 
    16784 > select #16/Dk
    16785 
    16786 8 atoms, 7 bonds, 1 residue, 1 model selected 
    16787 151 
    16788 152 
    16789 >1 
    16790 > renumber #16/Dk start 152
    16791 
    16792 1 residues renumbered 
    16793 
    16794 > changechains #16/Dk 4
    16795 
    16796 Chain IDs of 1 residues changed 
    16797 ['1', '2'] 
    16798 
    16799 > select #16/Bz
    16800 
    16801 16 atoms, 15 bonds, 2 residues, 1 model selected 
    16802 152 
    16803 153 
    16804 >1 
    16805 > renumber #16/Bz start 153
    16806 
    16807 2 residues renumbered 
    16808 
    16809 > changechains #16/Bz 4
    16810 
    16811 Chain IDs of 2 residues changed 
    16812 ['1', '2'] 
    16813 
    16814 > select #16/Br
    16815 
    16816 11 atoms, 10 bonds, 2 residues, 1 model selected 
    16817 154 
    16818 155 
    16819 >1 
    16820 > renumber #16/Br start 155
    16821 
    16822 2 residues renumbered 
    16823 
    16824 > changechains #16/Br 4
    16825 
    16826 Chain IDs of 2 residues changed 
    16827 ['1', '18'] 
    16828 
    16829 > select #16/F6
    16830 
    16831 144 atoms, 146 bonds, 18 residues, 1 model selected 
    16832 156 
    16833 181 
    16834 >25 
    16835 > renumber #16/F6 start 181
    16836 
    16837 18 residues renumbered 
    16838 
    16839 > changechains #16/F6 4
    16840 
    16841 Chain IDs of 18 residues changed 
    16842 ['1', '70'] 
    16843 
    16844 > select #16/q
    16845 
    16846 576 atoms, 590 bonds, 70 residues, 1 model selected 
    16847 198 
    16848 200 
    16849 >2 
    16850 > renumber #16/q start 200
    16851 
    16852 70 residues renumbered 
    16853 
    16854 > changechains #16/q 4
    16855 
    16856 Chain IDs of 70 residues changed 
    16857 ['1', '2'] 
    16858 
    16859 > select #16/Aw
    16860 
    16861 14 atoms, 13 bonds, 2 residues, 1 model selected 
    16862 269 
    16863 270 
    16864 >1 
    16865 > renumber #16/Aw start 270
    16866 
    16867 2 residues renumbered 
    16868 
    16869 > changechains #16/Aw 4
    16870 
    16871 Chain IDs of 2 residues changed 
    16872 ['1', '2'] 
    16873 
    16874 > select #16/X
    16875 
    16876 12 atoms, 11 bonds, 2 residues, 1 model selected 
    16877 271 
    16878 272 
    16879 >1 
    16880 > renumber #16/X start 272
    16881 
    16882 2 residues renumbered 
    16883 
    16884 > changechains #16/X 4
    16885 
    16886 Chain IDs of 2 residues changed 
    16887 ['1', '12'] 
    16888 
    16889 > select #16/Y
    16890 
    16891 92 atoms, 95 bonds, 12 residues, 1 model selected 
    16892 273 
    16893 274 
    16894 >1 
    16895 > renumber #16/Y start 274
    16896 
    16897 12 residues renumbered 
    16898 
    16899 > changechains #16/Y 4
    16900 
    16901 Chain IDs of 12 residues changed 
    16902 ['1', '5'] 
    16903 
    16904 > select #16/9
    16905 
    16906 41 atoms, 42 bonds, 5 residues, 1 model selected 
    16907 285 
    16908 286 
    16909 >1 
    16910 > renumber #16/9 start 286
    16911 
    16912 5 residues renumbered 
    16913 
    16914 > changechains #16/9 4
    16915 
    16916 Chain IDs of 5 residues changed 
    16917 ['1', '14'] 
    16918 
    16919 > select #16/c
    16920 
    16921 112 atoms, 116 bonds, 14 residues, 1 model selected 
    16922 290 
    16923 290 
    16924 >0 
    16925 
    16926 > delete #16/c:1
    16927 
    16928 > renumber #16/c start 291
    16929 
    16930 13 residues renumbered 
    16931 
    16932 > changechains #16/c 4
    16933 
    16934 Chain IDs of 13 residues changed 
    16935 ['1', '3'] 
    16936 
    16937 > select #16/Ge
    16938 
    16939 15 atoms, 14 bonds, 3 residues, 1 model selected 
    16940 303 
    16941 304 
    16942 >1 
    16943 > renumber #16/Ge start 304
    16944 
    16945 3 residues renumbered 
    16946 
    16947 > changechains #16/Ge 4
    16948 
    16949 Chain IDs of 3 residues changed 
    16950 ['1', '2'] 
    16951 
    16952 > select #16/Du
    16953 
    16954 13 atoms, 12 bonds, 2 residues, 1 model selected 
    16955 306 
    16956 309 
    16957 >3 
    16958 > renumber #16/Du start 309
    16959 
    16960 2 residues renumbered 
    16961 
    16962 > changechains #16/Du 4
    16963 
    16964 Chain IDs of 2 residues changed 
    16965 ['1', '3'] 
    16966 
    16967 > select #16/Ad
    16968 
    16969 18 atoms, 18 bonds, 3 residues, 1 model selected 
    16970 310 
    16971 311 
    16972 >1 
    16973 > renumber #16/Ad start 311
    16974 
    16975 3 residues renumbered 
    16976 
    16977 > changechains #16/Ad 4
    16978 
    16979 Chain IDs of 3 residues changed 
    16980 ['1', '7'] 
    16981 
    16982 > select #16/t
    16983 
    16984 50 atoms, 50 bonds, 7 residues, 1 model selected 
    16985 313 
    16986 314 
    16987 >1 
    16988 > renumber #16/t start 314
    16989 
    16990 7 residues renumbered 
    16991 
    16992 > changechains #16/t 4
    16993 
    16994 Chain IDs of 7 residues changed 
    16995 ['1', '32'] 
    16996 
    16997 > select #16/FU
    16998 
    16999 251 atoms, 254 bonds, 32 residues, 1 model selected 
    17000 320 
    17001 321 
    17002 >1 
    17003 > renumber #16/FU start 321
    17004 
    17005 32 residues renumbered 
    17006 
    17007 > changechains #16/FU 4
    17008 
    17009 Chain IDs of 32 residues changed 
    17010 ['1', '1'] 
    17011 
    17012 > select #16/By
    17013 
    17014 11 atoms, 10 bonds, 1 residue, 1 model selected 
    17015 352 
    17016 353 
    17017 >1 
    17018 > renumber #16/By start 353
    17019 
    17020 1 residues renumbered 
    17021 
    17022 > changechains #16/By 4
    17023 
    17024 Chain IDs of 1 residues changed 
    17025 ['1', '2'] 
    17026 
    17027 > select #16/AH
    17028 
    17029 13 atoms, 12 bonds, 2 residues, 1 model selected 
    17030 353 
    17031 354 
    17032 >1 
    17033 > renumber #16/AH start 354
    17034 
    17035 2 residues renumbered 
    17036 
    17037 > changechains #16/AH 4
    17038 
    17039 Chain IDs of 2 residues changed 
    17040 ['9', '18'] 
    17041 
    17042 > select #16/GV
    17043 
    17044 182 atoms, 182 bonds, 24 residues, 1 model selected 
    17045 355 
    17046 356 
    17047 >1 
    17048 > renumber #16/GV start 356
    17049 
    17050 24 residues renumbered 
    17051 
    17052 > changechains #16/GV 4
    17053 
    17054 Chain IDs of 24 residues changed 
    17055 ['1', '1'] 
    17056 
    17057 > select #16/Dq
    17058 
    17059 4 atoms, 3 bonds, 1 residue, 1 model selected 
    17060 379 
    17061 380 
    17062 >1 
    17063 > renumber #16/Dq start 380
    17064 
    17065 1 residues renumbered 
    17066 
    17067 > changechains #16/Dq 4
    17068 
    17069 Chain IDs of 1 residues changed 
    17070 ['1', '4'] 
    17071 
    17072 > select #16/GT
    17073 
    17074 28 atoms, 27 bonds, 4 residues, 1 model selected 
    17075 380 
    17076 381 
    17077 >1 
    17078 > renumber #16/GT start 381
    17079 
    17080 4 residues renumbered 
    17081 
    17082 > changechains #16/GT 4
    17083 
    17084 Chain IDs of 4 residues changed 
    17085 ['1', '2'] 
    17086 
    17087 > select #16/DS
    17088 
    17089 15 atoms, 15 bonds, 2 residues, 1 model selected 
    17090 384 
    17091 387 
    17092 >3 
    17093 > renumber #16/DS start 387
    17094 
    17095 2 residues renumbered 
    17096 
    17097 > changechains #16/DS 4
    17098 
    17099 Chain IDs of 2 residues changed 
    17100 ['1', '10'] 
    17101 
    17102 > select #16/Fp
    17103 
    17104 76 atoms, 78 bonds, 10 residues, 1 model selected 
    17105 388 
    17106 389 
    17107 >1 
    17108 > renumber #16/Fp start 389
    17109 
    17110 10 residues renumbered 
    17111 
    17112 > changechains #16/Fp 4
    17113 
    17114 Chain IDs of 10 residues changed 
    17115 ['1', '5'] 
    17116 
    17117 > select #16/7
    17118 
    17119 37 atoms, 37 bonds, 5 residues, 1 model selected 
    17120 398 
    17121 399 
    17122 >1 
    17123 > renumber #16/7 start 399
    17124 
    17125 5 residues renumbered 
    17126 
    17127 > changechains #16/7 4
    17128 
    17129 Chain IDs of 5 residues changed 
    17130 ['1', '2'] 
    17131 
    17132 > select #16/8
    17133 
    17134 16 atoms, 15 bonds, 2 residues, 1 model selected 
    17135 403 
    17136 404 
    17137 >1 
    17138 > renumber #16/8 start 404
    17139 
    17140 2 residues renumbered 
    17141 
    17142 > changechains #16/8 4
    17143 
    17144 Chain IDs of 2 residues changed 
    17145 ['1', '20'] 
    17146 
    17147 > select #16/FJ
    17148 
    17149 149 atoms, 150 bonds, 20 residues, 1 model selected 
    17150 405 
    17151 407 
    17152 >2 
    17153 > renumber #16/FJ start 407
    17154 
    17155 20 residues renumbered 
    17156 
    17157 > changechains #16/FJ 4
    17158 
    17159 Chain IDs of 20 residues changed 
    17160 ['1', '7'] 
    17161 
    17162 > select #16/Fu
    17163 
    17164 53 atoms, 53 bonds, 7 residues, 1 model selected 
    17165 426 
    17166 426 
    17167 >0 
    17168 
    17169 > delete #16/Fu:1
    17170 
    17171 > renumber #16/Fu start 427
    17172 
    17173 6 residues renumbered 
    17174 
    17175 > changechains #16/Fu 4
    17176 
    17177 Chain IDs of 6 residues changed 
    17178 ['1', '1'] 
    17179 
    17180 > select #16/D6
    17181 
    17182 8 atoms, 7 bonds, 1 residue, 1 model selected 
    17183 432 
    17184 469 
    17185 >37 
    17186 > renumber #16/D6 start 469
    17187 
    17188 1 residues renumbered 
    17189 
    17190 > changechains #16/D6 4
    17191 
    17192 Chain IDs of 1 residues changed 
    17193 ['1', '2'] 
    17194 
    17195 > select #16/Dl
    17196 
    17197 8 atoms, 7 bonds, 2 residues, 1 model selected 
    17198 469 
    17199 470 
    17200 >1 
    17201 > renumber #16/Dl start 470
    17202 
    17203 2 residues renumbered 
    17204 
    17205 > changechains #16/Dl 4
    17206 
    17207 Chain IDs of 2 residues changed 
    17208 ['1', '1'] 
    17209 
    17210 > select #16/DK
    17211 
    17212 9 atoms, 8 bonds, 1 residue, 1 model selected 
    17213 471 
    17214 472 
    17215 >1 
    17216 > renumber #16/DK start 472
    17217 
    17218 1 residues renumbered 
    17219 
    17220 > changechains #16/DK 4
    17221 
    17222 Chain IDs of 1 residues changed 
    17223 ['1', '1'] 
    17224 
    17225 > select #16/Dt
    17226 
    17227 9 atoms, 8 bonds, 1 residue, 1 model selected 
    17228 472 
    17229 473 
    17230 >1 
    17231 > renumber #16/Dt start 473
    17232 
    17233 1 residues renumbered 
    17234 
    17235 > changechains #16/Dt 4
    17236 
    17237 Chain IDs of 1 residues changed 
    17238 ['1', '2'] 
    17239 
    17240 > select #16/C2
    17241 
    17242 10 atoms, 9 bonds, 2 residues, 1 model selected 
    17243 473 
    17244 474 
    17245 >1 
    17246 > renumber #16/C2 start 474
    17247 
    17248 2 residues renumbered 
    17249 
    17250 > changechains #16/C2 4
    17251 
    17252 Chain IDs of 2 residues changed 
    17253 ['1', '3'] 
    17254 
    17255 > select #16/GR
    17256 
    17257 19 atoms, 18 bonds, 3 residues, 1 model selected 
    17258 475 
    17259 476 
    17260 >1 
    17261 > renumber #16/GR start 476
    17262 
    17263 3 residues renumbered 
    17264 
    17265 > changechains #16/GR 4
    17266 
    17267 Chain IDs of 3 residues changed 
    17268 ['1', '12'] 
    17269 
    17270 > select #16/FK
    17271 
    17272 87 atoms, 88 bonds, 12 residues, 1 model selected 
    17273 478 
    17274 511 
    17275 >33 
    17276 > renumber #16/FK start 511
    17277 
    17278 12 residues renumbered 
    17279 
    17280 > changechains #16/FK 4
    17281 
    17282 Chain IDs of 12 residues changed 
    17283 ['1', '3'] 
    17284 
    17285 > select #16/Gb
    17286 
    17287 19 atoms, 18 bonds, 3 residues, 1 model selected 
    17288 522 
    17289 524 
    17290 >2 
    17291 > renumber #16/Gb start 524
    17292 
    17293 3 residues renumbered 
    17294 
    17295 > changechains #16/Gb 4
    17296 
    17297 Chain IDs of 3 residues changed 
    17298 Renumering chain sp|P14548.2|CYB_LEITA_A 
    17299 ['2', '15'] 
    17300 
    17301 > select #16/FI
    17302 
    17303 436 atoms, 446 bonds, 53 residues, 1 model selected 
    17304 0 
    17305 2 
    17306 >2 
    17307 > renumber #16/FI start 2
    17308 
    17309 53 residues renumbered 
    17310 ['1', '1'] 
    17311 
    17312 > select #16/BA
    17313 
    17314 11 atoms, 11 bonds, 1 residue, 1 model selected 
    17315 54 
    17316 55 
    17317 >1 
    17318 > renumber #16/BA start 55
    17319 
    17320 1 residues renumbered 
    17321 
    17322 > changechains #16/BA FI
    17323 
    17324 Chain IDs of 1 residues changed 
    17325 ['1', '1'] 
    17326 
    17327 > select #16/B9
    17328 
    17329 5 atoms, 4 bonds, 1 residue, 1 model selected 
    17330 55 
    17331 56 
    17332 >1 
    17333 > renumber #16/B9 start 56
    17334 
    17335 1 residues renumbered 
    17336 
    17337 > changechains #16/B9 FI
    17338 
    17339 Chain IDs of 1 residues changed 
    17340 ['1', '153'] 
    17341 
    17342 > select #16/Ej
    17343 
    17344 1293 atoms, 1333 bonds, 153 residues, 1 model selected 
    17345 56 
    17346 57 
    17347 >1 
    17348 > renumber #16/Ej start 57
    17349 
    17350 153 residues renumbered 
    17351 
    17352 > changechains #16/Ej FI
    17353 
    17354 Chain IDs of 153 residues changed 
    17355 ['1', '1'] 
    17356 
    17357 > select #16/AC
    17358 
    17359 12 atoms, 12 bonds, 1 residue, 1 model selected 
    17360 209 
    17361 210 
    17362 >1 
    17363 > renumber #16/AC start 210
    17364 
    17365 1 residues renumbered 
    17366 
    17367 > changechains #16/AC FI
    17368 
    17369 Chain IDs of 1 residues changed 
    17370 ['1', '39'] 
    17371 
    17372 > select #16/k
    17373 
    17374 358 atoms, 372 bonds, 39 residues, 1 model selected 
    17375 210 
    17376 211 
    17377 >1 
    17378 > renumber #16/k start 211
    17379 
    17380 39 residues renumbered 
    17381 
    17382 > changechains #16/k FI
    17383 
    17384 Chain IDs of 39 residues changed 
    17385 ['1', '27'] 
    17386 
    17387 > select #16/Fn
    17388 
    17389 200 atoms, 203 bonds, 27 residues, 1 model selected 
    17390 249 
    17391 250 
    17392 >1 
    17393 > renumber #16/Fn start 250
    17394 
    17395 27 residues renumbered 
    17396 
    17397 > changechains #16/Fn FI
    17398 
    17399 Chain IDs of 27 residues changed 
    17400 ['1', '37'] 
    17401 
    17402 > select #16/o
    17403 
    17404 318 atoms, 331 bonds, 37 residues, 1 model selected 
    17405 276 
    17406 276 
    17407 >0 
    17408 
    17409 > delete #16/o:1
    17410 
    17411 > renumber #16/o start 277
    17412 
    17413 36 residues renumbered 
    17414 
    17415 > changechains #16/o FI
    17416 
    17417 Chain IDs of 36 residues changed 
    17418 ['1', '2'] 
    17419 
    17420 > select #16/AE
    17421 
    17422 22 atoms, 23 bonds, 2 residues, 1 model selected 
    17423 312 
    17424 313 
    17425 >1 
    17426 > renumber #16/AE start 313
    17427 
    17428 2 residues renumbered 
    17429 
    17430 > changechains #16/AE FI
    17431 
    17432 Chain IDs of 2 residues changed 
    17433 ['1', '1'] 
    17434 
    17435 > select #16/C8
    17436 
    17437 7 atoms, 7 bonds, 1 residue, 1 model selected 
    17438 314 
    17439 318 
    17440 >4 
    17441 > renumber #16/C8 start 318
    17442 
    17443 1 residues renumbered 
    17444 
    17445 > changechains #16/C8 FI
    17446 
    17447 Chain IDs of 1 residues changed 
    17448 ['1', '1'] 
    17449 
    17450 > select #16/Bo
    17451 
    17452 14 atoms, 15 bonds, 1 residue, 1 model selected 
    17453 318 
    17454 319 
    17455 >1 
    17456 > renumber #16/Bo start 319
    17457 
    17458 1 residues renumbered 
    17459 
    17460 > changechains #16/Bo FI
    17461 
    17462 Chain IDs of 1 residues changed 
    17463 ['1', '56'] 
    17464 
    17465 > select #16/Ep
    17466 
    17467 472 atoms, 486 bonds, 56 residues, 1 model selected 
    17468 319 
    17469 320 
    17470 >1 
    17471 > renumber #16/Ep start 320
    17472 
    17473 56 residues renumbered 
    17474 
    17475 > changechains #16/Ep FI
    17476 
    17477 Chain IDs of 56 residues changed 
    17478 Renumering chain LtaP35.0210.mRNA_A 
    17479 ['1', '9'] 
    17480 
    17481 > select #16/GU
    17482 
    17483 72 atoms, 72 bonds, 9 residues, 1 model selected 
    17484 0 
    17485 1 
    17486 >1 
    17487 > renumber #16/GU start 1
    17488 
    17489 0 residues renumbered 
    17490 ['1', '4'] 
    17491 
    17492 > select #16/FE
    17493 
    17494 28 atoms, 28 bonds, 4 residues, 1 model selected 
    17495 9 
    17496 10 
    17497 >1 
    17498 > renumber #16/FE start 10
    17499 
    17500 4 residues renumbered 
    17501 
    17502 > changechains #16/FE GU
    17503 
    17504 Chain IDs of 4 residues changed 
    17505 ['1', '2'] 
    17506 
    17507 > select #16/Az
    17508 
    17509 12 atoms, 11 bonds, 2 residues, 1 model selected 
    17510 13 
    17511 14 
    17512 >1 
    17513 > renumber #16/Az start 14
    17514 
    17515 2 residues renumbered 
    17516 
    17517 > changechains #16/Az GU
    17518 
    17519 Chain IDs of 2 residues changed 
    17520 ['1', '3'] 
    17521 
    17522 > select #16/J
    17523 
    17524 21 atoms, 20 bonds, 3 residues, 1 model selected 
    17525 15 
    17526 16 
    17527 >1 
    17528 > renumber #16/J start 16
    17529 
    17530 3 residues renumbered 
    17531 
    17532 > changechains #16/J GU
    17533 
    17534 Chain IDs of 3 residues changed 
    17535 ['1', '2'] 
    17536 
    17537 > select #16/AK
    17538 
    17539 12 atoms, 11 bonds, 2 residues, 1 model selected 
    17540 18 
    17541 19 
    17542 >1 
    17543 > renumber #16/AK start 19
    17544 
    17545 2 residues renumbered 
    17546 
    17547 > changechains #16/AK GU
    17548 
    17549 Chain IDs of 2 residues changed 
    17550 ['1', '1'] 
    17551 
    17552 > select #16/Cj
    17553 
    17554 11 atoms, 10 bonds, 1 residue, 1 model selected 
    17555 20 
    17556 20 
    17557 >0 
    17558 
    17559 > delete #16/Cj:1
    17560 
    17561 > renumber #16/Cj start 21
    17562 
    17563 Traceback (most recent call last): 
    17564 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    17565 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    17566 line 188, in   
    17567 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    17568 File
    17569 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17570 packages/chimerax/core/commands/run.py", line 49, in run 
    17571 results = command.run(text, log=log, return_json=return_json) 
    17572 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17573 File
    17574 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17575 packages/chimerax/core/commands/cli.py", line 3213, in run 
    17576 result = ci.function(session, **kw_args) 
    17577 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17578 File
    17579 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17580 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    17581 raise UserError("No residues specified") 
    17582 chimerax.core.errors.UserError: No residues specified 
    17583  
    17584 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    17585 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    17586 
    17587 > close #16
    17588 
    17589 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    17590 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    17591 > #15 alignmentsMod1Mod.txt
    17592 
    17593 ['1', '8'] 
    17594 ['1', '8'] 
    17595 ['11'] 
    17596 ['1', '1'] 
    17597 ['11'] 
    17598 ['1', '1'] 
    17599 ['1', '3'] 
    17600 ['1', '3'] 
    17601 ['11'] 
    17602 ['1', '1'] 
    17603 ['1', '4'] 
    17604 ['1', '4'] 
    17605 ['1', '15'] 
    17606 ['1', '15'] 
    17607 ['11'] 
    17608 ['1', '1'] 
    17609 ['1', '9'] 
    17610 ['1', '9'] 
    17611 ['1', '4'] 
    17612 ['1', '4'] 
    17613 ['1', '28'] 
    17614 ['1', '28'] 
    17615 ['1', '15'] 
    17616 ['1', '15'] 
    17617 ['7', '15'] 
    17618 ['7', '15'] 
    17619 ['2', '44'] 
    17620 ['2', '44'] 
    17621 ['1', '7'] 
    17622 ['1', '7'] 
    17623 ['1', '8'] 
    17624 ['1', '8'] 
    17625 ['1', '13'] 
    17626 ['1', '13'] 
    17627 ['11'] 
    17628 ['1', '1'] 
    17629 ['1', '31'] 
    17630 ['1', '31'] 
    17631 ['12'] 
    17632 ['1', '2'] 
    17633 ['6', '22'] 
    17634 ['6', '22'] 
    17635 ['5', '21'] 
    17636 ['5', '21'] 
    17637 ['3', '140'] 
    17638 ['3', '140'] 
    17639 ['1', '3'] 
    17640 ['1', '3'] 
    17641 ['1', '8'] 
    17642 ['1', '8'] 
    17643 ['2', '18'] 
    17644 ['2', '18'] 
    17645 ['1', '7'] 
    17646 ['1', '7'] 
    17647 ['7', '12'] 
    17648 ['7', '12'] 
    17649 ['1', '10'] 
    17650 ['1', '10'] 
    17651 ['12'] 
    17652 ['1', '2'] 
    17653 ['1', '10'] 
    17654 ['1', '10'] 
    17655 ['4', '63'] 
    17656 ['4', '63'] 
    17657 ['9', '11'] 
    17658 ['9', '11'] 
    17659 ['11'] 
    17660 ['1', '1'] 
    17661 ['1', '5'] 
    17662 ['1', '5'] 
    17663 ['5', '33'] 
    17664 ['5', '33'] 
    17665 ['1', '4'] 
    17666 ['1', '4'] 
    17667 ['1', '74'] 
    17668 ['1', '74'] 
    17669 ['3', '18'] 
    17670 ['3', '18'] 
    17671 ['2', '22'] 
    17672 ['2', '22'] 
    17673 ['1', '4'] 
    17674 ['1', '4'] 
    17675 ['1', '3'] 
    17676 ['1', '3'] 
    17677 ['2', '81'] 
    17678 ['2', '81'] 
    17679 ['1', '8'] 
    17680 ['1', '8'] 
    17681 ['1', '5'] 
    17682 ['1', '5'] 
    17683 ['14', '47'] 
    17684 ['14', '47'] 
    17685 ['1', '5'] 
    17686 ['1', '5'] 
    17687 ['1', '3'] 
    17688 ['1', '3'] 
    17689 ['11'] 
    17690 ['1', '1'] 
    17691 ['1', '7'] 
    17692 ['1', '7'] 
    17693 ['1', '14'] 
    17694 ['1', '14'] 
    17695 ['1', '5'] 
    17696 ['1', '5'] 
    17697 ['1', '4'] 
    17698 ['1', '4'] 
    17699 ['1', '7'] 
    17700 ['1', '7'] 
    17701 ['1', '14'] 
    17702 ['1', '14'] 
    17703 ['1', '25'] 
    17704 ['1', '25'] 
    17705 ['1', '20'] 
    17706 ['1', '20'] 
    17707 ['1', '8'] 
    17708 ['1', '8'] 
    17709 ['11'] 
    17710 ['1', '1'] 
    17711 ['12'] 
    17712 ['1', '2'] 
    17713 ['12'] 
    17714 ['1', '2'] 
    17715 ['1', '18'] 
    17716 ['1', '18'] 
    17717 ['1', '70'] 
    17718 ['1', '70'] 
    17719 ['12'] 
    17720 ['1', '2'] 
    17721 ['12'] 
    17722 ['1', '2'] 
    17723 ['1', '12'] 
    17724 ['1', '12'] 
    17725 ['1', '5'] 
    17726 ['1', '5'] 
    17727 ['1', '14'] 
    17728 ['1', '14'] 
    17729 ['1', '3'] 
    17730 ['1', '3'] 
    17731 ['12'] 
    17732 ['1', '2'] 
    17733 ['1', '3'] 
    17734 ['1', '3'] 
    17735 ['1', '7'] 
    17736 ['1', '7'] 
    17737 ['1', '32'] 
    17738 ['1', '32'] 
    17739 ['11'] 
    17740 ['1', '1'] 
    17741 ['12'] 
    17742 ['1', '2'] 
    17743 ['9', '18'] 
    17744 ['9', '18'] 
    17745 ['11'] 
    17746 ['1', '1'] 
    17747 ['1', '4'] 
    17748 ['1', '4'] 
    17749 ['12'] 
    17750 ['1', '2'] 
    17751 ['1', '10'] 
    17752 ['1', '10'] 
    17753 ['1', '5'] 
    17754 ['1', '5'] 
    17755 ['12'] 
    17756 ['1', '2'] 
    17757 ['1', '20'] 
    17758 ['1', '20'] 
    17759 ['1', '7'] 
    17760 ['1', '7'] 
    17761 ['11'] 
    17762 ['1', '1'] 
    17763 ['12'] 
    17764 ['1', '2'] 
    17765 ['11'] 
    17766 ['1', '1'] 
    17767 ['11'] 
    17768 ['1', '1'] 
    17769 ['12'] 
    17770 ['1', '2'] 
    17771 ['1', '3'] 
    17772 ['1', '3'] 
    17773 ['1', '12'] 
    17774 ['1', '12'] 
    17775 ['1', '3'] 
    17776 ['1', '3'] 
    17777 ['2', '15'] 
    17778 ['2', '15'] 
    17779 ['11'] 
    17780 ['1', '1'] 
    17781 ['11'] 
    17782 ['1', '1'] 
    17783 ['1', '153'] 
    17784 ['1', '153'] 
    17785 ['11'] 
    17786 ['1', '1'] 
    17787 ['1', '39'] 
    17788 ['1', '39'] 
    17789 ['1', '27'] 
    17790 ['1', '27'] 
    17791 ['1', '37'] 
    17792 ['1', '37'] 
    17793 ['12'] 
    17794 ['1', '2'] 
    17795 ['11'] 
    17796 ['1', '1'] 
    17797 ['11'] 
    17798 ['1', '1'] 
    17799 ['1', '56'] 
    17800 ['1', '56'] 
    17801 ['1', '9'] 
    17802 ['1', '9'] 
    17803 ['1', '4'] 
    17804 ['1', '4'] 
    17805 ['12'] 
    17806 ['1', '2'] 
    17807 ['1', '3'] 
    17808 ['1', '3'] 
    17809 ['12'] 
    17810 ['1', '2'] 
    17811 ['1', '10'] 
    17812 ['1', '10'] 
    17813 ['1', '4'] 
    17814 ['1', '4'] 
    17815 ['11'] 
    17816 ['1', '1'] 
    17817 ['12'] 
    17818 ['1', '2'] 
    17819 ['1', '30'] 
    17820 ['1', '30'] 
    17821 ['3', '45'] 
    17822 ['3', '45'] 
    17823 ['1', '9'] 
    17824 ['1', '9'] 
    17825 ['2', '4'] 
    17826 ['2', '4'] 
    17827 ['12'] 
    17828 ['1', '2'] 
    17829 ['1', '59'] 
    17830 ['1', '59'] 
    17831 ['1', '13'] 
    17832 ['1', '13'] 
    17833 ['1', '34'] 
    17834 ['1', '34'] 
    17835 ['1', '5'] 
    17836 ['1', '5'] 
    17837 ['3', '25'] 
    17838 ['3', '25'] 
    17839 ['1', '4'] 
    17840 ['1', '4'] 
    17841 ['1', '3'] 
    17842 ['1', '3'] 
    17843 ['6', '20'] 
    17844 ['6', '20'] 
    17845 ['1', '11'] 
    17846 ['1', '11'] 
    17847 ['3', '39'] 
    17848 ['3', '39'] 
    17849 ['1', '27'] 
    17850 ['1', '27'] 
    17851 ['1', '21'] 
    17852 ['1', '21'] 
    17853 ['11'] 
    17854 ['1', '1'] 
    17855 ['1', '4'] 
    17856 ['1', '4'] 
    17857 ['2', '33'] 
    17858 ['2', '33'] 
    17859 ['11'] 
    17860 ['1', '1'] 
    17861 ['11'] 
    17862 ['1', '1'] 
    17863 ['12'] 
    17864 ['1', '2'] 
    17865 ['11'] 
    17866 ['1', '1'] 
    17867 ['11'] 
    17868 ['1', '1'] 
    17869 ['1', '8'] 
    17870 ['1', '8'] 
    17871 LtaP35.1590.mRNA_A 
    17872 LtaP35.1450.mRNA_A 
    17873 LtaP07.0060.mRNA_A 
    17874 LtaP32.3800.mRNA_A 
    17875 LtaP13.0770.mRNA_A 
    17876 sp|P14548.2|CYB_LEITA_A 
    17877 LtaP35.0210.mRNA_A 
    17878 GET91263.1_A 
    17879 LtaP35.0250.mRNA_A 
    17880 GET89654.1_A 
    17881 
    17882 > combine #15 close false name renamedAndRenumberedModel
    17883 
    17884 Renumering chain LtaP35.1590.mRNA_A 
    17885 ['1', '8'] 
    17886 
    17887 > select #16/GC
    17888 
    17889 66 atoms, 66 bonds, 8 residues, 1 model selected 
    17890 0 
    17891 17 
    17892 >17 
    17893 > renumber #16/GC start 17
    17894 
    17895 8 residues renumbered 
    17896 ['1', '1'] 
    17897 
    17898 > select #16/Bd
    17899 
    17900 4 atoms, 3 bonds, 1 residue, 1 model selected 
    17901 24 
    17902 25 
    17903 >1 
    17904 > renumber #16/Bd start 25
    17905 
    17906 1 residues renumbered 
    17907 
    17908 > changechains #16/Bd GC
    17909 
    17910 Chain IDs of 1 residues changed 
    17911 ['1', '1'] 
    17912 
    17913 > select #16/Ca
    17914 
    17915 4 atoms, 3 bonds, 1 residue, 1 model selected 
    17916 25 
    17917 26 
    17918 >1 
    17919 > renumber #16/Ca start 26
    17920 
    17921 1 residues renumbered 
    17922 
    17923 > changechains #16/Ca GC
    17924 
    17925 Chain IDs of 1 residues changed 
    17926 ['1', '3'] 
    17927 
    17928 > select #16/AP
    17929 
    17930 19 atoms, 19 bonds, 3 residues, 1 model selected 
    17931 26 
    17932 27 
    17933 >1 
    17934 > renumber #16/AP start 27
    17935 
    17936 3 residues renumbered 
    17937 
    17938 > changechains #16/AP GC
    17939 
    17940 Chain IDs of 3 residues changed 
    17941 ['1', '1'] 
    17942 
    17943 > select #16/BN
    17944 
    17945 6 atoms, 5 bonds, 1 residue, 1 model selected 
    17946 29 
    17947 30 
    17948 >1 
    17949 > renumber #16/BN start 30
    17950 
    17951 1 residues renumbered 
    17952 
    17953 > changechains #16/BN GC
    17954 
    17955 Chain IDs of 1 residues changed 
    17956 ['1', '4'] 
    17957 
    17958 > select #16/FF
    17959 
    17960 32 atoms, 32 bonds, 4 residues, 1 model selected 
    17961 30 
    17962 31 
    17963 >1 
    17964 > renumber #16/FF start 31
    17965 
    17966 4 residues renumbered 
    17967 
    17968 > changechains #16/FF GC
    17969 
    17970 Chain IDs of 4 residues changed 
    17971 ['1', '15'] 
    17972 
    17973 > select #16/Fo
    17974 
    17975 103 atoms, 106 bonds, 15 residues, 1 model selected 
    17976 34 
    17977 35 
    17978 >1 
    17979 > renumber #16/Fo start 35
    17980 
    17981 15 residues renumbered 
    17982 
    17983 > changechains #16/Fo GC
    17984 
    17985 Chain IDs of 15 residues changed 
    17986 ['1', '1'] 
    17987 
    17988 > select #16/Cy
    17989 
    17990 8 atoms, 7 bonds, 1 residue, 1 model selected 
    17991 49 
    17992 50 
    17993 >1 
    17994 > renumber #16/Cy start 50
    17995 
    17996 1 residues renumbered 
    17997 
    17998 > changechains #16/Cy GC
    17999 
    18000 Chain IDs of 1 residues changed 
    18001 ['1', '9'] 
    18002 
    18003 > select #16/EY
    18004 
    18005 66 atoms, 67 bonds, 9 residues, 1 model selected 
    18006 50 
    18007 51 
    18008 >1 
    18009 > renumber #16/EY start 51
    18010 
    18011 9 residues renumbered 
    18012 
    18013 > changechains #16/EY GC
    18014 
    18015 Chain IDs of 9 residues changed 
    18016 ['1', '4'] 
    18017 
    18018 > select #16/FV
    18019 
    18020 24 atoms, 23 bonds, 4 residues, 1 model selected 
    18021 59 
    18022 60 
    18023 >1 
    18024 > renumber #16/FV start 60
    18025 
    18026 4 residues renumbered 
    18027 
    18028 > changechains #16/FV GC
    18029 
    18030 Chain IDs of 4 residues changed 
    18031 ['1', '28'] 
    18032 
    18033 > select #16/Ey
    18034 
    18035 210 atoms, 213 bonds, 28 residues, 1 model selected 
    18036 63 
    18037 64 
    18038 >1 
    18039 > renumber #16/Ey start 64
    18040 
    18041 28 residues renumbered 
    18042 
    18043 > changechains #16/Ey GC
    18044 
    18045 Chain IDs of 28 residues changed 
    18046 ['1', '15'] 
    18047 
    18048 > select #16/K
    18049 
    18050 102 atoms, 102 bonds, 15 residues, 1 model selected 
    18051 91 
    18052 92 
    18053 >1 
    18054 > renumber #16/K start 92
    18055 
    18056 15 residues renumbered 
    18057 
    18058 > changechains #16/K GC
    18059 
    18060 Chain IDs of 15 residues changed 
    18061 ['7', '15'] 
    18062 
    18063 > select #16/L
    18064 
    18065 184 atoms, 187 bonds, 22 residues, 1 model selected 
    18066 106 
    18067 107 
    18068 >1 
    18069 > renumber #16/L start 107
    18070 
    18071 22 residues renumbered 
    18072 
    18073 > changechains #16/L GC
    18074 
    18075 Chain IDs of 22 residues changed 
    18076 ['2', '44'] 
    18077 
    18078 > select #16/Ee
    18079 
    18080 355 atoms, 363 bonds, 44 residues, 1 model selected 
    18081 128 
    18082 129 
    18083 >1 
    18084 > renumber #16/Ee start 129
    18085 
    18086 44 residues renumbered 
    18087 
    18088 > changechains #16/Ee GC
    18089 
    18090 Chain IDs of 44 residues changed 
    18091 Renumering chain LtaP35.1450.mRNA_A 
    18092 ['1', '7'] 
    18093 
    18094 > select #16/Gc
    18095 
    18096 52 atoms, 52 bonds, 7 residues, 1 model selected 
    18097 0 
    18098 2 
    18099 >2 
    18100 > renumber #16/Gc start 2
    18101 
    18102 7 residues renumbered 
    18103 ['1', '8'] 
    18104 
    18105 > select #16/Ex
    18106 
    18107 55 atoms, 56 bonds, 8 residues, 1 model selected 
    18108 8 
    18109 10 
    18110 >2 
    18111 > renumber #16/Ex start 10
    18112 
    18113 8 residues renumbered 
    18114 
    18115 > changechains #16/Ex Gc
    18116 
    18117 Chain IDs of 8 residues changed 
    18118 ['1', '13'] 
    18119 
    18120 > select #16/E6
    18121 
    18122 98 atoms, 100 bonds, 13 residues, 1 model selected 
    18123 17 
    18124 18 
    18125 >1 
    18126 > renumber #16/E6 start 18
    18127 
    18128 13 residues renumbered 
    18129 
    18130 > changechains #16/E6 Gc
    18131 
    18132 Chain IDs of 13 residues changed 
    18133 ['1', '1'] 
    18134 
    18135 > select #16/Ai
    18136 
    18137 11 atoms, 10 bonds, 1 residue, 1 model selected 
    18138 30 
    18139 31 
    18140 >1 
    18141 > renumber #16/Ai start 31
    18142 
    18143 1 residues renumbered 
    18144 
    18145 > changechains #16/Ai Gc
    18146 
    18147 Chain IDs of 1 residues changed 
    18148 ['1', '31'] 
    18149 
    18150 > select #16/0
    18151 
    18152 233 atoms, 235 bonds, 31 residues, 1 model selected 
    18153 31 
    18154 32 
    18155 >1 
    18156 > renumber #16/0 start 32
    18157 
    18158 31 residues renumbered 
    18159 
    18160 > changechains #16/0 Gc
    18161 
    18162 Chain IDs of 31 residues changed 
    18163 ['1', '2'] 
    18164 
    18165 > select #16/U
    18166 
    18167 11 atoms, 10 bonds, 2 residues, 1 model selected 
    18168 62 
    18169 63 
    18170 >1 
    18171 > renumber #16/U start 63
    18172 
    18173 2 residues renumbered 
    18174 
    18175 > changechains #16/U Gc
    18176 
    18177 Chain IDs of 2 residues changed 
    18178 ['6', '22'] 
    18179 
    18180 > select #16/d
    18181 
    18182 176 atoms, 182 bonds, 22 residues, 1 model selected 
    18183 64 
    18184 65 
    18185 >1 
    18186 > renumber #16/d start 65
    18187 
    18188 22 residues renumbered 
    18189 
    18190 > changechains #16/d Gc
    18191 
    18192 Chain IDs of 22 residues changed 
    18193 ['5', '21'] 
    18194 
    18195 > select #16/EV
    18196 
    18197 161 atoms, 160 bonds, 21 residues, 1 model selected 
    18198 86 
    18199 87 
    18200 >1 
    18201 > renumber #16/EV start 87
    18202 
    18203 21 residues renumbered 
    18204 
    18205 > changechains #16/EV Gc
    18206 
    18207 Chain IDs of 21 residues changed 
    18208 
    18209 > delete #16/Ew:132
    18210 
    18211 > renumber #16/Ew:133-9999999 start 132
    18212 
    18213 11 residues renumbered 
    18214 ['3', '139'] 
    18215 
    18216 > select #16/Ew
    18217 
    18218 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    18219 107 
    18220 108 
    18221 >1 
    18222 > renumber #16/Ew start 108
    18223 
    18224 142 residues renumbered 
    18225 
    18226 > changechains #16/Ew Gc
    18227 
    18228 Chain IDs of 142 residues changed 
    18229 ['1', '3'] 
    18230 
    18231 > select #16/GO
    18232 
    18233 18 atoms, 18 bonds, 3 residues, 1 model selected 
    18234 249 
    18235 250 
    18236 >1 
    18237 > renumber #16/GO start 250
    18238 
    18239 3 residues renumbered 
    18240 
    18241 > changechains #16/GO Gc
    18242 
    18243 Chain IDs of 3 residues changed 
    18244 ['1', '8'] 
    18245 
    18246 > select #16/Z
    18247 
    18248 69 atoms, 71 bonds, 8 residues, 1 model selected 
    18249 252 
    18250 253 
    18251 >1 
    18252 > renumber #16/Z start 253
    18253 
    18254 8 residues renumbered 
    18255 
    18256 > changechains #16/Z Gc
    18257 
    18258 Chain IDs of 8 residues changed 
    18259 ['2', '18'] 
    18260 
    18261 > select #16/ES
    18262 
    18263 163 atoms, 164 bonds, 18 residues, 1 model selected 
    18264 260 
    18265 262 
    18266 >2 
    18267 > renumber #16/ES start 262
    18268 
    18269 18 residues renumbered 
    18270 
    18271 > changechains #16/ES Gc
    18272 
    18273 Chain IDs of 18 residues changed 
    18274 ['1', '7'] 
    18275 
    18276 > select #16/Fc
    18277 
    18278 40 atoms, 41 bonds, 7 residues, 1 model selected 
    18279 279 
    18280 282 
    18281 >3 
    18282 > renumber #16/Fc start 282
    18283 
    18284 7 residues renumbered 
    18285 
    18286 > changechains #16/Fc Gc
    18287 
    18288 Chain IDs of 7 residues changed 
    18289 ['7', '12'] 
    18290 
    18291 > select #16/Fa
    18292 
    18293 177 atoms, 179 bonds, 24 residues, 1 model selected 
    18294 288 
    18295 289 
    18296 >1 
    18297 > renumber #16/Fa start 289
    18298 
    18299 24 residues renumbered 
    18300 
    18301 > changechains #16/Fa Gc
    18302 
    18303 Chain IDs of 24 residues changed 
    18304 ['1', '10'] 
    18305 
    18306 > select #16/2
    18307 
    18308 81 atoms, 83 bonds, 10 residues, 1 model selected 
    18309 312 
    18310 314 
    18311 >2 
    18312 > renumber #16/2 start 314
    18313 
    18314 10 residues renumbered 
    18315 
    18316 > changechains #16/2 Gc
    18317 
    18318 Chain IDs of 10 residues changed 
    18319 ['1', '2'] 
    18320 
    18321 > select #16/E
    18322 
    18323 16 atoms, 16 bonds, 2 residues, 1 model selected 
    18324 323 
    18325 326 
    18326 >3 
    18327 > renumber #16/E start 326
    18328 
    18329 2 residues renumbered 
    18330 
    18331 > changechains #16/E Gc
    18332 
    18333 Chain IDs of 2 residues changed 
    18334 ['1', '10'] 
    18335 
    18336 > select #16/Ff
    18337 
    18338 75 atoms, 76 bonds, 10 residues, 1 model selected 
    18339 327 
    18340 328 
    18341 >1 
    18342 > renumber #16/Ff start 328
    18343 
    18344 10 residues renumbered 
    18345 
    18346 > changechains #16/Ff Gc
    18347 
    18348 Chain IDs of 10 residues changed 
    18349 ['4', '63'] 
    18350 
    18351 > select #16/E2
    18352 
    18353 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    18354 337 
    18355 338 
    18356 >1 
    18357 > renumber #16/E2 start 338
    18358 
    18359 132 residues renumbered 
    18360 
    18361 > changechains #16/E2 Gc
    18362 
    18363 Chain IDs of 132 residues changed 
    18364 ['9', '11'] 
    18365 
    18366 > select #16/W
    18367 
    18368 182 atoms, 189 bonds, 20 residues, 1 model selected 
    18369 469 
    18370 470 
    18371 >1 
    18372 > renumber #16/W start 470
    18373 
    18374 20 residues renumbered 
    18375 
    18376 > changechains #16/W Gc
    18377 
    18378 Chain IDs of 20 residues changed 
    18379 ['1', '1'] 
    18380 
    18381 > select #16/BM
    18382 
    18383 7 atoms, 6 bonds, 1 residue, 1 model selected 
    18384 489 
    18385 490 
    18386 >1 
    18387 > renumber #16/BM start 490
    18388 
    18389 1 residues renumbered 
    18390 
    18391 > changechains #16/BM Gc
    18392 
    18393 Chain IDs of 1 residues changed 
    18394 Renumering chain LtaP07.0060.mRNA_A 
    18395 ['1', '5'] 
    18396 
    18397 > select #16/A
    18398 
    18399 32 atoms, 33 bonds, 5 residues, 1 model selected 
    18400 0 
    18401 5 
    18402 >5 
    18403 > renumber #16/A start 5
    18404 
    18405 5 residues renumbered 
    18406 ['5', '33'] 
    18407 
    18408 > select #16/Fd
    18409 
    18410 314 atoms, 324 bonds, 36 residues, 1 model selected 
    18411 9 
    18412 10 
    18413 >1 
    18414 > renumber #16/Fd start 10
    18415 
    18416 36 residues renumbered 
    18417 
    18418 > changechains #16/Fd A
    18419 
    18420 Chain IDs of 36 residues changed 
    18421 ['1', '4'] 
    18422 
    18423 > select #16/Ef
    18424 
    18425 24 atoms, 23 bonds, 4 residues, 1 model selected 
    18426 45 
    18427 46 
    18428 >1 
    18429 > renumber #16/Ef start 46
    18430 
    18431 4 residues renumbered 
    18432 
    18433 > changechains #16/Ef A
    18434 
    18435 Chain IDs of 4 residues changed 
    18436 ['1', '74'] 
    18437 
    18438 > select #16/Eg
    18439 
    18440 577 atoms, 589 bonds, 74 residues, 1 model selected 
    18441 49 
    18442 50 
    18443 >1 
    18444 > renumber #16/Eg start 50
    18445 
    18446 74 residues renumbered 
    18447 
    18448 > changechains #16/Eg A
    18449 
    18450 Chain IDs of 74 residues changed 
    18451 ['3', '18'] 
    18452 
    18453 > select #16/j
    18454 
    18455 160 atoms, 162 bonds, 22 residues, 1 model selected 
    18456 123 
    18457 124 
    18458 >1 
    18459 > renumber #16/j start 124
    18460 
    18461 22 residues renumbered 
    18462 
    18463 > changechains #16/j A
    18464 
    18465 Chain IDs of 22 residues changed 
    18466 
    18467 > renumber #16/Ei:7-9999999 start 8
    18468 
    18469 19 residues renumbered 
    18470 
    18471 > ~bond #16/Ei:6@C #16/Ei:8@N
    18472 
    18473 ['2', '21'] 
    18474 
    18475 > select #16/Ei
    18476 
    18477 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    18478 145 
    18479 145 
    18480 >0 
    18481 
    18482 > delete #16/Ei:1
    18483 
    18484 > renumber #16/Ei start 146
    18485 
    18486 24 residues renumbered 
    18487 
    18488 > changechains #16/Ei A
    18489 
    18490 Chain IDs of 24 residues changed 
    18491 ['1', '4'] 
    18492 
    18493 > select #16/Bi
    18494 
    18495 23 atoms, 22 bonds, 4 residues, 1 model selected 
    18496 170 
    18497 168 
    18498 >-2 
    18499 
    18500 > delete #16/Bi:3
    18501 
    18502 > delete #16/Bi:2
    18503 
    18504 > delete #16/Bi:1
    18505 
    18506 > renumber #16/Bi start 171
    18507 
    18508 1 residues renumbered 
    18509 
    18510 > changechains #16/Bi A
    18511 
    18512 Chain IDs of 1 residues changed 
    18513 ['1', '3'] 
    18514 
    18515 > select #16/GM
    18516 
    18517 21 atoms, 20 bonds, 3 residues, 1 model selected 
    18518 171 
    18519 171 
    18520 >0 
    18521 
    18522 > delete #16/GM:1
    18523 
    18524 > renumber #16/GM start 172
    18525 
    18526 2 residues renumbered 
    18527 
    18528 > changechains #16/GM A
    18529 
    18530 Chain IDs of 2 residues changed 
    18531 ['2', '81'] 
    18532 
    18533 > select #16/E8
    18534 
    18535 695 atoms, 717 bonds, 86 residues, 1 model selected 
    18536 173 
    18537 174 
    18538 >1 
    18539 > renumber #16/E8 start 174
    18540 
    18541 86 residues renumbered 
    18542 
    18543 > changechains #16/E8 A
    18544 
    18545 Chain IDs of 86 residues changed 
    18546 Renumering chain LtaP32.3800.mRNA_A 
    18547 ['1', '8'] 
    18548 
    18549 > select #16/N
    18550 
    18551 66 atoms, 69 bonds, 8 residues, 1 model selected 
    18552 0 
    18553 34 
    18554 >34 
    18555 > renumber #16/N start 34
    18556 
    18557 8 residues renumbered 
    18558 ['1', '5'] 
    18559 
    18560 > select #16/GZ
    18561 
    18562 35 atoms, 34 bonds, 5 residues, 1 model selected 
    18563 41 
    18564 42 
    18565 >1 
    18566 > renumber #16/GZ start 42
    18567 
    18568 5 residues renumbered 
    18569 
    18570 > changechains #16/GZ N
    18571 
    18572 Chain IDs of 5 residues changed 
    18573 ['14', '47'] 
    18574 
    18575 > select #16/FT
    18576 
    18577 810 atoms, 833 bonds, 101 residues, 1 model selected 
    18578 46 
    18579 47 
    18580 >1 
    18581 > renumber #16/FT start 47
    18582 
    18583 101 residues renumbered 
    18584 
    18585 > changechains #16/FT N
    18586 
    18587 Chain IDs of 101 residues changed 
    18588 Renumering chain LtaP13.0770.mRNA_A 
    18589 ['1', '5'] 
    18590 
    18591 > select #16/4
    18592 
    18593 50 atoms, 51 bonds, 5 residues, 1 model selected 
    18594 0 
    18595 25 
    18596 >25 
    18597 > renumber #16/4 start 25
    18598 
    18599 5 residues renumbered 
    18600 ['1', '3'] 
    18601 
    18602 > select #16/D
    18603 
    18604 20 atoms, 20 bonds, 3 residues, 1 model selected 
    18605 29 
    18606 30 
    18607 >1 
    18608 > renumber #16/D start 30
    18609 
    18610 3 residues renumbered 
    18611 
    18612 > changechains #16/D 4
    18613 
    18614 Chain IDs of 3 residues changed 
    18615 ['1', '1'] 
    18616 
    18617 > select #16/CN
    18618 
    18619 6 atoms, 5 bonds, 1 residue, 1 model selected 
    18620 32 
    18621 33 
    18622 >1 
    18623 > renumber #16/CN start 33
    18624 
    18625 1 residues renumbered 
    18626 
    18627 > changechains #16/CN 4
    18628 
    18629 Chain IDs of 1 residues changed 
    18630 ['1', '7'] 
    18631 
    18632 > select #16/FG
    18633 
    18634 48 atoms, 48 bonds, 7 residues, 1 model selected 
    18635 33 
    18636 34 
    18637 >1 
    18638 > renumber #16/FG start 34
    18639 
    18640 7 residues renumbered 
    18641 
    18642 > changechains #16/FG 4
    18643 
    18644 Chain IDs of 7 residues changed 
    18645 ['1', '14'] 
    18646 
    18647 > select #16/GH
    18648 
    18649 92 atoms, 92 bonds, 14 residues, 1 model selected 
    18650 40 
    18651 57 
    18652 >17 
    18653 > renumber #16/GH start 57
    18654 
    18655 14 residues renumbered 
    18656 
    18657 > changechains #16/GH 4
    18658 
    18659 Chain IDs of 14 residues changed 
    18660 ['1', '5'] 
    18661 
    18662 > select #16/GW
    18663 
    18664 46 atoms, 46 bonds, 5 residues, 1 model selected 
    18665 70 
    18666 71 
    18667 >1 
    18668 > renumber #16/GW start 71
    18669 
    18670 5 residues renumbered 
    18671 
    18672 > changechains #16/GW 4
    18673 
    18674 Chain IDs of 5 residues changed 
    18675 ['1', '4'] 
    18676 
    18677 > select #16/Fj
    18678 
    18679 24 atoms, 23 bonds, 4 residues, 1 model selected 
    18680 75 
    18681 76 
    18682 >1 
    18683 > renumber #16/Fj start 76
    18684 
    18685 4 residues renumbered 
    18686 
    18687 > changechains #16/Fj 4
    18688 
    18689 Chain IDs of 4 residues changed 
    18690 ['1', '7'] 
    18691 
    18692 > select #16/E4
    18693 
    18694 48 atoms, 48 bonds, 7 residues, 1 model selected 
    18695 79 
    18696 80 
    18697 >1 
    18698 > renumber #16/E4 start 80
    18699 
    18700 7 residues renumbered 
    18701 
    18702 > changechains #16/E4 4
    18703 
    18704 Chain IDs of 7 residues changed 
    18705 ['1', '14'] 
    18706 
    18707 > select #16/Er
    18708 
    18709 99 atoms, 102 bonds, 14 residues, 1 model selected 
    18710 86 
    18711 87 
    18712 >1 
    18713 > renumber #16/Er start 87
    18714 
    18715 14 residues renumbered 
    18716 
    18717 > changechains #16/Er 4
    18718 
    18719 Chain IDs of 14 residues changed 
    18720 ['1', '25'] 
    18721 
    18722 > select #16/ER
    18723 
    18724 208 atoms, 211 bonds, 25 residues, 1 model selected 
    18725 100 
    18726 101 
    18727 >1 
    18728 > renumber #16/ER start 101
    18729 
    18730 25 residues renumbered 
    18731 
    18732 > changechains #16/ER 4
    18733 
    18734 Chain IDs of 25 residues changed 
    18735 ['1', '20'] 
    18736 
    18737 > select #16/Fz
    18738 
    18739 146 atoms, 147 bonds, 20 residues, 1 model selected 
    18740 125 
    18741 124 
    18742 >-1 
    18743 
    18744 > delete #16/Fz:2
    18745 
    18746 > delete #16/Fz:1
    18747 
    18748 > renumber #16/Fz start 126
    18749 
    18750 18 residues renumbered 
    18751 
    18752 > changechains #16/Fz 4
    18753 
    18754 Chain IDs of 18 residues changed 
    18755 ['1', '8'] 
    18756 
    18757 > select #16/p
    18758 
    18759 62 atoms, 62 bonds, 8 residues, 1 model selected 
    18760 143 
    18761 144 
    18762 >1 
    18763 > renumber #16/p start 144
    18764 
    18765 8 residues renumbered 
    18766 
    18767 > changechains #16/p 4
    18768 
    18769 Chain IDs of 8 residues changed 
    18770 ['1', '1'] 
    18771 
    18772 > select #16/Dk
    18773 
    18774 8 atoms, 7 bonds, 1 residue, 1 model selected 
    18775 151 
    18776 152 
    18777 >1 
    18778 > renumber #16/Dk start 152
    18779 
    18780 1 residues renumbered 
    18781 
    18782 > changechains #16/Dk 4
    18783 
    18784 Chain IDs of 1 residues changed 
    18785 ['1', '2'] 
    18786 
    18787 > select #16/Bz
    18788 
    18789 16 atoms, 15 bonds, 2 residues, 1 model selected 
    18790 152 
    18791 153 
    18792 >1 
    18793 > renumber #16/Bz start 153
    18794 
    18795 2 residues renumbered 
    18796 
    18797 > changechains #16/Bz 4
    18798 
    18799 Chain IDs of 2 residues changed 
    18800 ['1', '2'] 
    18801 
    18802 > select #16/Br
    18803 
    18804 11 atoms, 10 bonds, 2 residues, 1 model selected 
    18805 154 
    18806 155 
    18807 >1 
    18808 > renumber #16/Br start 155
    18809 
    18810 2 residues renumbered 
    18811 
    18812 > changechains #16/Br 4
    18813 
    18814 Chain IDs of 2 residues changed 
    18815 ['1', '18'] 
    18816 
    18817 > select #16/F6
    18818 
    18819 144 atoms, 146 bonds, 18 residues, 1 model selected 
    18820 156 
    18821 181 
    18822 >25 
    18823 > renumber #16/F6 start 181
    18824 
    18825 18 residues renumbered 
    18826 
    18827 > changechains #16/F6 4
    18828 
    18829 Chain IDs of 18 residues changed 
    18830 ['1', '70'] 
    18831 
    18832 > select #16/q
    18833 
    18834 576 atoms, 590 bonds, 70 residues, 1 model selected 
    18835 198 
    18836 200 
    18837 >2 
    18838 > renumber #16/q start 200
    18839 
    18840 70 residues renumbered 
    18841 
    18842 > changechains #16/q 4
    18843 
    18844 Chain IDs of 70 residues changed 
    18845 ['1', '2'] 
    18846 
    18847 > select #16/Aw
    18848 
    18849 14 atoms, 13 bonds, 2 residues, 1 model selected 
    18850 269 
    18851 270 
    18852 >1 
    18853 > renumber #16/Aw start 270
    18854 
    18855 2 residues renumbered 
    18856 
    18857 > changechains #16/Aw 4
    18858 
    18859 Chain IDs of 2 residues changed 
    18860 ['1', '2'] 
    18861 
    18862 > select #16/X
    18863 
    18864 12 atoms, 11 bonds, 2 residues, 1 model selected 
    18865 271 
    18866 272 
    18867 >1 
    18868 > renumber #16/X start 272
    18869 
    18870 2 residues renumbered 
    18871 
    18872 > changechains #16/X 4
    18873 
    18874 Chain IDs of 2 residues changed 
    18875 ['1', '12'] 
    18876 
    18877 > select #16/Y
    18878 
    18879 92 atoms, 95 bonds, 12 residues, 1 model selected 
    18880 273 
    18881 274 
    18882 >1 
    18883 > renumber #16/Y start 274
    18884 
    18885 12 residues renumbered 
    18886 
    18887 > changechains #16/Y 4
    18888 
    18889 Chain IDs of 12 residues changed 
    18890 ['1', '5'] 
    18891 
    18892 > select #16/9
    18893 
    18894 41 atoms, 42 bonds, 5 residues, 1 model selected 
    18895 285 
    18896 286 
    18897 >1 
    18898 > renumber #16/9 start 286
    18899 
    18900 5 residues renumbered 
    18901 
    18902 > changechains #16/9 4
    18903 
    18904 Chain IDs of 5 residues changed 
    18905 ['1', '14'] 
    18906 
    18907 > select #16/c
    18908 
    18909 112 atoms, 116 bonds, 14 residues, 1 model selected 
    18910 290 
    18911 290 
    18912 >0 
    18913 
    18914 > delete #16/c:1
    18915 
    18916 > renumber #16/c start 291
    18917 
    18918 13 residues renumbered 
    18919 
    18920 > changechains #16/c 4
    18921 
    18922 Chain IDs of 13 residues changed 
    18923 ['1', '3'] 
    18924 
    18925 > select #16/Ge
    18926 
    18927 15 atoms, 14 bonds, 3 residues, 1 model selected 
    18928 303 
    18929 304 
    18930 >1 
    18931 > renumber #16/Ge start 304
    18932 
    18933 3 residues renumbered 
    18934 
    18935 > changechains #16/Ge 4
    18936 
    18937 Chain IDs of 3 residues changed 
    18938 ['1', '2'] 
    18939 
    18940 > select #16/Du
    18941 
    18942 13 atoms, 12 bonds, 2 residues, 1 model selected 
    18943 306 
    18944 309 
    18945 >3 
    18946 > renumber #16/Du start 309
    18947 
    18948 2 residues renumbered 
    18949 
    18950 > changechains #16/Du 4
    18951 
    18952 Chain IDs of 2 residues changed 
    18953 ['1', '3'] 
    18954 
    18955 > select #16/Ad
    18956 
    18957 18 atoms, 18 bonds, 3 residues, 1 model selected 
    18958 310 
    18959 311 
    18960 >1 
    18961 > renumber #16/Ad start 311
    18962 
    18963 3 residues renumbered 
    18964 
    18965 > changechains #16/Ad 4
    18966 
    18967 Chain IDs of 3 residues changed 
    18968 ['1', '7'] 
    18969 
    18970 > select #16/t
    18971 
    18972 50 atoms, 50 bonds, 7 residues, 1 model selected 
    18973 313 
    18974 314 
    18975 >1 
    18976 > renumber #16/t start 314
    18977 
    18978 7 residues renumbered 
    18979 
    18980 > changechains #16/t 4
    18981 
    18982 Chain IDs of 7 residues changed 
    18983 ['1', '32'] 
    18984 
    18985 > select #16/FU
    18986 
    18987 251 atoms, 254 bonds, 32 residues, 1 model selected 
    18988 320 
    18989 321 
    18990 >1 
    18991 > renumber #16/FU start 321
    18992 
    18993 32 residues renumbered 
    18994 
    18995 > changechains #16/FU 4
    18996 
    18997 Chain IDs of 32 residues changed 
    18998 ['1', '1'] 
    18999 
    19000 > select #16/By
    19001 
    19002 11 atoms, 10 bonds, 1 residue, 1 model selected 
    19003 352 
    19004 353 
    19005 >1 
    19006 > renumber #16/By start 353
    19007 
    19008 1 residues renumbered 
    19009 
    19010 > changechains #16/By 4
    19011 
    19012 Chain IDs of 1 residues changed 
    19013 ['1', '2'] 
    19014 
    19015 > select #16/AH
    19016 
    19017 13 atoms, 12 bonds, 2 residues, 1 model selected 
    19018 353 
    19019 354 
    19020 >1 
    19021 > renumber #16/AH start 354
    19022 
    19023 2 residues renumbered 
    19024 
    19025 > changechains #16/AH 4
    19026 
    19027 Chain IDs of 2 residues changed 
    19028 ['9', '18'] 
    19029 
    19030 > select #16/GV
    19031 
    19032 182 atoms, 182 bonds, 24 residues, 1 model selected 
    19033 355 
    19034 356 
    19035 >1 
    19036 > renumber #16/GV start 356
    19037 
    19038 24 residues renumbered 
    19039 
    19040 > changechains #16/GV 4
    19041 
    19042 Chain IDs of 24 residues changed 
    19043 ['1', '1'] 
    19044 
    19045 > select #16/Dq
    19046 
    19047 4 atoms, 3 bonds, 1 residue, 1 model selected 
    19048 379 
    19049 380 
    19050 >1 
    19051 > renumber #16/Dq start 380
    19052 
    19053 1 residues renumbered 
    19054 
    19055 > changechains #16/Dq 4
    19056 
    19057 Chain IDs of 1 residues changed 
    19058 ['1', '4'] 
    19059 
    19060 > select #16/GT
    19061 
    19062 28 atoms, 27 bonds, 4 residues, 1 model selected 
    19063 380 
    19064 381 
    19065 >1 
    19066 > renumber #16/GT start 381
    19067 
    19068 4 residues renumbered 
    19069 
    19070 > changechains #16/GT 4
    19071 
    19072 Chain IDs of 4 residues changed 
    19073 ['1', '2'] 
    19074 
    19075 > select #16/DS
    19076 
    19077 15 atoms, 15 bonds, 2 residues, 1 model selected 
    19078 384 
    19079 387 
    19080 >3 
    19081 > renumber #16/DS start 387
    19082 
    19083 2 residues renumbered 
    19084 
    19085 > changechains #16/DS 4
    19086 
    19087 Chain IDs of 2 residues changed 
    19088 ['1', '10'] 
    19089 
    19090 > select #16/Fp
    19091 
    19092 76 atoms, 78 bonds, 10 residues, 1 model selected 
    19093 388 
    19094 389 
    19095 >1 
    19096 > renumber #16/Fp start 389
    19097 
    19098 10 residues renumbered 
    19099 
    19100 > changechains #16/Fp 4
    19101 
    19102 Chain IDs of 10 residues changed 
    19103 ['1', '5'] 
    19104 
    19105 > select #16/7
    19106 
    19107 37 atoms, 37 bonds, 5 residues, 1 model selected 
    19108 398 
    19109 399 
    19110 >1 
    19111 > renumber #16/7 start 399
    19112 
    19113 5 residues renumbered 
    19114 
    19115 > changechains #16/7 4
    19116 
    19117 Chain IDs of 5 residues changed 
    19118 ['1', '2'] 
    19119 
    19120 > select #16/8
    19121 
    19122 16 atoms, 15 bonds, 2 residues, 1 model selected 
    19123 403 
    19124 404 
    19125 >1 
    19126 > renumber #16/8 start 404
    19127 
    19128 2 residues renumbered 
    19129 
    19130 > changechains #16/8 4
    19131 
    19132 Chain IDs of 2 residues changed 
    19133 ['1', '20'] 
    19134 
    19135 > select #16/FJ
    19136 
    19137 149 atoms, 150 bonds, 20 residues, 1 model selected 
    19138 405 
    19139 407 
    19140 >2 
    19141 > renumber #16/FJ start 407
    19142 
    19143 20 residues renumbered 
    19144 
    19145 > changechains #16/FJ 4
    19146 
    19147 Chain IDs of 20 residues changed 
    19148 ['1', '7'] 
    19149 
    19150 > select #16/Fu
    19151 
    19152 53 atoms, 53 bonds, 7 residues, 1 model selected 
    19153 426 
    19154 426 
    19155 >0 
    19156 
    19157 > delete #16/Fu:1
    19158 
    19159 > renumber #16/Fu start 427
    19160 
    19161 6 residues renumbered 
    19162 
    19163 > changechains #16/Fu 4
    19164 
    19165 Chain IDs of 6 residues changed 
    19166 ['1', '1'] 
    19167 
    19168 > select #16/D6
    19169 
    19170 8 atoms, 7 bonds, 1 residue, 1 model selected 
    19171 432 
    19172 469 
    19173 >37 
    19174 > renumber #16/D6 start 469
    19175 
    19176 1 residues renumbered 
    19177 
    19178 > changechains #16/D6 4
    19179 
    19180 Chain IDs of 1 residues changed 
    19181 ['1', '2'] 
    19182 
    19183 > select #16/Dl
    19184 
    19185 8 atoms, 7 bonds, 2 residues, 1 model selected 
    19186 469 
    19187 470 
    19188 >1 
    19189 > renumber #16/Dl start 470
    19190 
    19191 2 residues renumbered 
    19192 
    19193 > changechains #16/Dl 4
    19194 
    19195 Chain IDs of 2 residues changed 
    19196 ['1', '1'] 
    19197 
    19198 > select #16/DK
    19199 
    19200 9 atoms, 8 bonds, 1 residue, 1 model selected 
    19201 471 
    19202 472 
    19203 >1 
    19204 > renumber #16/DK start 472
    19205 
    19206 1 residues renumbered 
    19207 
    19208 > changechains #16/DK 4
    19209 
    19210 Chain IDs of 1 residues changed 
    19211 ['1', '1'] 
    19212 
    19213 > select #16/Dt
    19214 
    19215 9 atoms, 8 bonds, 1 residue, 1 model selected 
    19216 472 
    19217 473 
    19218 >1 
    19219 > renumber #16/Dt start 473
    19220 
    19221 1 residues renumbered 
    19222 
    19223 > changechains #16/Dt 4
    19224 
    19225 Chain IDs of 1 residues changed 
    19226 ['1', '2'] 
    19227 
    19228 > select #16/C2
    19229 
    19230 10 atoms, 9 bonds, 2 residues, 1 model selected 
    19231 473 
    19232 474 
    19233 >1 
    19234 > renumber #16/C2 start 474
    19235 
    19236 2 residues renumbered 
    19237 
    19238 > changechains #16/C2 4
    19239 
    19240 Chain IDs of 2 residues changed 
    19241 ['1', '3'] 
    19242 
    19243 > select #16/GR
    19244 
    19245 19 atoms, 18 bonds, 3 residues, 1 model selected 
    19246 475 
    19247 476 
    19248 >1 
    19249 > renumber #16/GR start 476
    19250 
    19251 3 residues renumbered 
    19252 
    19253 > changechains #16/GR 4
    19254 
    19255 Chain IDs of 3 residues changed 
    19256 ['1', '12'] 
    19257 
    19258 > select #16/FK
    19259 
    19260 87 atoms, 88 bonds, 12 residues, 1 model selected 
    19261 478 
    19262 511 
    19263 >33 
    19264 > renumber #16/FK start 511
    19265 
    19266 12 residues renumbered 
    19267 
    19268 > changechains #16/FK 4
    19269 
    19270 Chain IDs of 12 residues changed 
    19271 ['1', '3'] 
    19272 
    19273 > select #16/Gb
    19274 
    19275 19 atoms, 18 bonds, 3 residues, 1 model selected 
    19276 522 
    19277 524 
    19278 >2 
    19279 > renumber #16/Gb start 524
    19280 
    19281 3 residues renumbered 
    19282 
    19283 > changechains #16/Gb 4
    19284 
    19285 Chain IDs of 3 residues changed 
    19286 Renumering chain sp|P14548.2|CYB_LEITA_A 
    19287 ['2', '15'] 
    19288 
    19289 > select #16/FI
    19290 
    19291 436 atoms, 446 bonds, 53 residues, 1 model selected 
    19292 0 
    19293 2 
    19294 >2 
    19295 > renumber #16/FI start 2
    19296 
    19297 53 residues renumbered 
    19298 ['1', '1'] 
    19299 
    19300 > select #16/BA
    19301 
    19302 11 atoms, 11 bonds, 1 residue, 1 model selected 
    19303 54 
    19304 55 
    19305 >1 
    19306 > renumber #16/BA start 55
    19307 
    19308 1 residues renumbered 
    19309 
    19310 > changechains #16/BA FI
    19311 
    19312 Chain IDs of 1 residues changed 
    19313 ['1', '1'] 
    19314 
    19315 > select #16/B9
    19316 
    19317 5 atoms, 4 bonds, 1 residue, 1 model selected 
    19318 55 
    19319 56 
    19320 >1 
    19321 > renumber #16/B9 start 56
    19322 
    19323 1 residues renumbered 
    19324 
    19325 > changechains #16/B9 FI
    19326 
    19327 Chain IDs of 1 residues changed 
    19328 ['1', '153'] 
    19329 
    19330 > select #16/Ej
    19331 
    19332 1293 atoms, 1333 bonds, 153 residues, 1 model selected 
    19333 56 
    19334 57 
    19335 >1 
    19336 > renumber #16/Ej start 57
    19337 
    19338 153 residues renumbered 
    19339 
    19340 > changechains #16/Ej FI
    19341 
    19342 Chain IDs of 153 residues changed 
    19343 ['1', '1'] 
    19344 
    19345 > select #16/AC
    19346 
    19347 12 atoms, 12 bonds, 1 residue, 1 model selected 
    19348 209 
    19349 210 
    19350 >1 
    19351 > renumber #16/AC start 210
    19352 
    19353 1 residues renumbered 
    19354 
    19355 > changechains #16/AC FI
    19356 
    19357 Chain IDs of 1 residues changed 
    19358 ['1', '39'] 
    19359 
    19360 > select #16/k
    19361 
    19362 358 atoms, 372 bonds, 39 residues, 1 model selected 
    19363 210 
    19364 211 
    19365 >1 
    19366 > renumber #16/k start 211
    19367 
    19368 39 residues renumbered 
    19369 
    19370 > changechains #16/k FI
    19371 
    19372 Chain IDs of 39 residues changed 
    19373 ['1', '27'] 
    19374 
    19375 > select #16/Fn
    19376 
    19377 200 atoms, 203 bonds, 27 residues, 1 model selected 
    19378 249 
    19379 250 
    19380 >1 
    19381 > renumber #16/Fn start 250
    19382 
    19383 27 residues renumbered 
    19384 
    19385 > changechains #16/Fn FI
    19386 
    19387 Chain IDs of 27 residues changed 
    19388 ['1', '37'] 
    19389 
    19390 > select #16/o
    19391 
    19392 318 atoms, 331 bonds, 37 residues, 1 model selected 
    19393 276 
    19394 276 
    19395 >0 
    19396 
    19397 > delete #16/o:1
    19398 
    19399 > renumber #16/o start 277
    19400 
    19401 36 residues renumbered 
    19402 
    19403 > changechains #16/o FI
    19404 
    19405 Chain IDs of 36 residues changed 
    19406 ['1', '2'] 
    19407 
    19408 > select #16/AE
    19409 
    19410 22 atoms, 23 bonds, 2 residues, 1 model selected 
    19411 312 
    19412 313 
    19413 >1 
    19414 > renumber #16/AE start 313
    19415 
    19416 2 residues renumbered 
    19417 
    19418 > changechains #16/AE FI
    19419 
    19420 Chain IDs of 2 residues changed 
    19421 ['1', '1'] 
    19422 
    19423 > select #16/C8
    19424 
    19425 7 atoms, 7 bonds, 1 residue, 1 model selected 
    19426 314 
    19427 318 
    19428 >4 
    19429 > renumber #16/C8 start 318
    19430 
    19431 1 residues renumbered 
    19432 
    19433 > changechains #16/C8 FI
    19434 
    19435 Chain IDs of 1 residues changed 
    19436 ['1', '1'] 
    19437 
    19438 > select #16/Bo
    19439 
    19440 14 atoms, 15 bonds, 1 residue, 1 model selected 
    19441 318 
    19442 319 
    19443 >1 
    19444 > renumber #16/Bo start 319
    19445 
    19446 1 residues renumbered 
    19447 
    19448 > changechains #16/Bo FI
    19449 
    19450 Chain IDs of 1 residues changed 
    19451 ['1', '56'] 
    19452 
    19453 > select #16/Ep
    19454 
    19455 472 atoms, 486 bonds, 56 residues, 1 model selected 
    19456 319 
    19457 320 
    19458 >1 
    19459 > renumber #16/Ep start 320
    19460 
    19461 56 residues renumbered 
    19462 
    19463 > changechains #16/Ep FI
    19464 
    19465 Chain IDs of 56 residues changed 
    19466 Renumering chain LtaP35.0210.mRNA_A 
    19467 ['1', '9'] 
    19468 
    19469 > select #16/GU
    19470 
    19471 72 atoms, 72 bonds, 9 residues, 1 model selected 
    19472 0 
    19473 1 
    19474 >1 
    19475 > renumber #16/GU start 1
    19476 
    19477 0 residues renumbered 
    19478 ['1', '4'] 
    19479 
    19480 > select #16/FE
    19481 
    19482 28 atoms, 28 bonds, 4 residues, 1 model selected 
    19483 9 
    19484 10 
    19485 >1 
    19486 > renumber #16/FE start 10
    19487 
    19488 4 residues renumbered 
    19489 
    19490 > changechains #16/FE GU
    19491 
    19492 Chain IDs of 4 residues changed 
    19493 ['1', '2'] 
    19494 
    19495 > select #16/Az
    19496 
    19497 12 atoms, 11 bonds, 2 residues, 1 model selected 
    19498 13 
    19499 14 
    19500 >1 
    19501 > renumber #16/Az start 14
    19502 
    19503 2 residues renumbered 
    19504 
    19505 > changechains #16/Az GU
    19506 
    19507 Chain IDs of 2 residues changed 
    19508 ['1', '3'] 
    19509 
    19510 > select #16/J
    19511 
    19512 21 atoms, 20 bonds, 3 residues, 1 model selected 
    19513 15 
    19514 16 
    19515 >1 
    19516 > renumber #16/J start 16
    19517 
    19518 3 residues renumbered 
    19519 
    19520 > changechains #16/J GU
    19521 
    19522 Chain IDs of 3 residues changed 
    19523 ['1', '2'] 
    19524 
    19525 > select #16/AK
    19526 
    19527 12 atoms, 11 bonds, 2 residues, 1 model selected 
    19528 18 
    19529 19 
    19530 >1 
    19531 > renumber #16/AK start 19
    19532 
    19533 2 residues renumbered 
    19534 
    19535 > changechains #16/AK GU
    19536 
    19537 Chain IDs of 2 residues changed 
    19538 ['1', '10'] 
    19539 
    19540 > select #16/h
    19541 
    19542 86 atoms, 88 bonds, 10 residues, 1 model selected 
    19543 20 
    19544 21 
    19545 >1 
    19546 > renumber #16/h start 21
    19547 
    19548 10 residues renumbered 
    19549 
    19550 > changechains #16/h GU
    19551 
    19552 Chain IDs of 10 residues changed 
    19553 ['1', '4'] 
    19554 
    19555 > select #16/i
    19556 
    19557 44 atoms, 46 bonds, 4 residues, 1 model selected 
    19558 30 
    19559 31 
    19560 >1 
    19561 > renumber #16/i start 31
    19562 
    19563 4 residues renumbered 
    19564 
    19565 > changechains #16/i GU
    19566 
    19567 Chain IDs of 4 residues changed 
    19568 ['1', '1'] 
    19569 
    19570 > select #16/Cw
    19571 
    19572 8 atoms, 7 bonds, 1 residue, 1 model selected 
    19573 34 
    19574 35 
    19575 >1 
    19576 > renumber #16/Cw start 35
    19577 
    19578 1 residues renumbered 
    19579 
    19580 > changechains #16/Cw GU
    19581 
    19582 Chain IDs of 1 residues changed 
    19583 ['1', '2'] 
    19584 
    19585 > select #16/As
    19586 
    19587 16 atoms, 16 bonds, 2 residues, 1 model selected 
    19588 35 
    19589 36 
    19590 >1 
    19591 > renumber #16/As start 36
    19592 
    19593 2 residues renumbered 
    19594 
    19595 > changechains #16/As GU
    19596 
    19597 Chain IDs of 2 residues changed 
    19598 ['1', '30'] 
    19599 
    19600 > select #16/r
    19601 
    19602 242 atoms, 242 bonds, 30 residues, 1 model selected 
    19603 37 
    19604 38 
    19605 >1 
    19606 > renumber #16/r start 38
    19607 
    19608 30 residues renumbered 
    19609 
    19610 > changechains #16/r GU
    19611 
    19612 Chain IDs of 30 residues changed 
    19613 ['3', '45'] 
    19614 
    19615 > select #16/E5
    19616 
    19617 401 atoms, 418 bonds, 48 residues, 1 model selected 
    19618 67 
    19619 68 
    19620 >1 
    19621 > renumber #16/E5 start 68
    19622 
    19623 48 residues renumbered 
    19624 
    19625 > changechains #16/E5 GU
    19626 
    19627 Chain IDs of 48 residues changed 
    19628 ['1', '9'] 
    19629 
    19630 > select #16/l
    19631 
    19632 68 atoms, 68 bonds, 9 residues, 1 model selected 
    19633 115 
    19634 116 
    19635 >1 
    19636 > renumber #16/l start 116
    19637 
    19638 9 residues renumbered 
    19639 
    19640 > changechains #16/l GU
    19641 
    19642 Chain IDs of 9 residues changed 
    19643 ['2', '4'] 
    19644 
    19645 > select #16/FW
    19646 
    19647 101 atoms, 104 bonds, 13 residues, 1 model selected 
    19648 124 
    19649 125 
    19650 >1 
    19651 > renumber #16/FW start 125
    19652 
    19653 13 residues renumbered 
    19654 
    19655 > changechains #16/FW GU
    19656 
    19657 Chain IDs of 13 residues changed 
    19658 ['1', '2'] 
    19659 
    19660 > select #16/BD
    19661 
    19662 11 atoms, 10 bonds, 2 residues, 1 model selected 
    19663 137 
    19664 125 
    19665 >-12 
    19666 
    19667 > delete #16/BD:13
    19668 
    19669 > delete #16/BD:12
    19670 
    19671 > delete #16/BD:11
    19672 
    19673 > delete #16/BD:10
    19674 
    19675 > delete #16/BD:9
    19676 
    19677 > delete #16/BD:8
    19678 
    19679 > delete #16/BD:7
    19680 
    19681 > delete #16/BD:6
    19682 
    19683 > delete #16/BD:5
    19684 
    19685 > delete #16/BD:4
    19686 
    19687 > delete #16/BD:3
    19688 
    19689 > delete #16/BD:2
    19690 
    19691 > delete #16/BD:1
    19692 
    19693 > renumber #16/BD start 138
    19694 
    19695 Traceback (most recent call last): 
    19696 File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
    19697 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
    19698 line 188, in   
    19699 run(session, f'renumber {outModel}/{hC} start {newStart}') 
    19700 File
    19701 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19702 packages/chimerax/core/commands/run.py", line 49, in run 
    19703 results = command.run(text, log=log, return_json=return_json) 
    19704 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19705 File
    19706 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19707 packages/chimerax/core/commands/cli.py", line 3213, in run 
    19708 result = ci.function(session, **kw_args) 
    19709 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19710 File
    19711 "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19712 packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber 
    19713 raise UserError("No residues specified") 
    19714 chimerax.core.errors.UserError: No residues specified 
    19715  
    19716 Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    19717 Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py 
    19718 
    19719 > close #16
    19720 
    19721 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    19722 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    19723 > #15 alignmentsMod1Mod.txt
    19724 
    19725 ['1', '8'] 
    19726 ['1', '8'] 
    19727 ['11'] 
    19728 ['1', '1'] 
    19729 ['11'] 
    19730 ['1', '1'] 
    19731 ['1', '3'] 
    19732 ['1', '3'] 
    19733 ['11'] 
    19734 ['1', '1'] 
    19735 ['1', '4'] 
    19736 ['1', '4'] 
    19737 ['1', '15'] 
    19738 ['1', '15'] 
    19739 ['11'] 
    19740 ['1', '1'] 
    19741 ['1', '9'] 
    19742 ['1', '9'] 
    19743 ['1', '4'] 
    19744 ['1', '4'] 
    19745 ['1', '28'] 
    19746 ['1', '28'] 
    19747 ['1', '15'] 
    19748 ['1', '15'] 
    19749 ['7', '15'] 
    19750 ['7', '15'] 
    19751 ['2', '44'] 
    19752 ['2', '44'] 
    19753 ['1', '7'] 
    19754 ['1', '7'] 
    19755 ['1', '8'] 
    19756 ['1', '8'] 
    19757 ['1', '13'] 
    19758 ['1', '13'] 
    19759 ['11'] 
    19760 ['1', '1'] 
    19761 ['1', '31'] 
    19762 ['1', '31'] 
    19763 ['12'] 
    19764 ['1', '2'] 
    19765 ['6', '22'] 
    19766 ['6', '22'] 
    19767 ['5', '21'] 
    19768 ['5', '21'] 
    19769 ['3', '140'] 
    19770 ['3', '140'] 
    19771 ['1', '3'] 
    19772 ['1', '3'] 
    19773 ['1', '8'] 
    19774 ['1', '8'] 
    19775 ['2', '18'] 
    19776 ['2', '18'] 
    19777 ['1', '7'] 
    19778 ['1', '7'] 
    19779 ['7', '12'] 
    19780 ['7', '12'] 
    19781 ['1', '10'] 
    19782 ['1', '10'] 
    19783 ['12'] 
    19784 ['1', '2'] 
    19785 ['1', '10'] 
    19786 ['1', '10'] 
    19787 ['4', '63'] 
    19788 ['4', '63'] 
    19789 ['9', '11'] 
    19790 ['9', '11'] 
    19791 ['11'] 
    19792 ['1', '1'] 
    19793 ['1', '5'] 
    19794 ['1', '5'] 
    19795 ['5', '33'] 
    19796 ['5', '33'] 
    19797 ['1', '4'] 
    19798 ['1', '4'] 
    19799 ['1', '74'] 
    19800 ['1', '74'] 
    19801 ['3', '18'] 
    19802 ['3', '18'] 
    19803 ['2', '22'] 
    19804 ['2', '22'] 
    19805 ['1', '4'] 
    19806 ['1', '4'] 
    19807 ['1', '3'] 
    19808 ['1', '3'] 
    19809 ['2', '81'] 
    19810 ['2', '81'] 
    19811 ['1', '8'] 
    19812 ['1', '8'] 
    19813 ['1', '5'] 
    19814 ['1', '5'] 
    19815 ['14', '47'] 
    19816 ['14', '47'] 
    19817 ['1', '5'] 
    19818 ['1', '5'] 
    19819 ['1', '3'] 
    19820 ['1', '3'] 
    19821 ['11'] 
    19822 ['1', '1'] 
    19823 ['1', '7'] 
    19824 ['1', '7'] 
    19825 ['1', '14'] 
    19826 ['1', '14'] 
    19827 ['1', '5'] 
    19828 ['1', '5'] 
    19829 ['1', '4'] 
    19830 ['1', '4'] 
    19831 ['1', '7'] 
    19832 ['1', '7'] 
    19833 ['1', '14'] 
    19834 ['1', '14'] 
    19835 ['1', '25'] 
    19836 ['1', '25'] 
    19837 ['1', '20'] 
    19838 ['1', '20'] 
    19839 ['1', '8'] 
    19840 ['1', '8'] 
    19841 ['11'] 
    19842 ['1', '1'] 
    19843 ['12'] 
    19844 ['1', '2'] 
    19845 ['12'] 
    19846 ['1', '2'] 
    19847 ['1', '18'] 
    19848 ['1', '18'] 
    19849 ['1', '70'] 
    19850 ['1', '70'] 
    19851 ['12'] 
    19852 ['1', '2'] 
    19853 ['12'] 
    19854 ['1', '2'] 
    19855 ['1', '12'] 
    19856 ['1', '12'] 
    19857 ['1', '5'] 
    19858 ['1', '5'] 
    19859 ['1', '14'] 
    19860 ['1', '14'] 
    19861 ['1', '3'] 
    19862 ['1', '3'] 
    19863 ['12'] 
    19864 ['1', '2'] 
    19865 ['1', '3'] 
    19866 ['1', '3'] 
    19867 ['1', '7'] 
    19868 ['1', '7'] 
    19869 ['1', '32'] 
    19870 ['1', '32'] 
    19871 ['11'] 
    19872 ['1', '1'] 
    19873 ['12'] 
    19874 ['1', '2'] 
    19875 ['9', '18'] 
    19876 ['9', '18'] 
    19877 ['11'] 
    19878 ['1', '1'] 
    19879 ['1', '4'] 
    19880 ['1', '4'] 
    19881 ['12'] 
    19882 ['1', '2'] 
    19883 ['1', '10'] 
    19884 ['1', '10'] 
    19885 ['1', '5'] 
    19886 ['1', '5'] 
    19887 ['12'] 
    19888 ['1', '2'] 
    19889 ['1', '20'] 
    19890 ['1', '20'] 
    19891 ['1', '7'] 
    19892 ['1', '7'] 
    19893 ['11'] 
    19894 ['1', '1'] 
    19895 ['12'] 
    19896 ['1', '2'] 
    19897 ['11'] 
    19898 ['1', '1'] 
    19899 ['11'] 
    19900 ['1', '1'] 
    19901 ['12'] 
    19902 ['1', '2'] 
    19903 ['1', '3'] 
    19904 ['1', '3'] 
    19905 ['1', '12'] 
    19906 ['1', '12'] 
    19907 ['1', '3'] 
    19908 ['1', '3'] 
    19909 ['2', '15'] 
    19910 ['2', '15'] 
    19911 ['11'] 
    19912 ['1', '1'] 
    19913 ['11'] 
    19914 ['1', '1'] 
    19915 ['1', '153'] 
    19916 ['1', '153'] 
    19917 ['11'] 
    19918 ['1', '1'] 
    19919 ['1', '39'] 
    19920 ['1', '39'] 
    19921 ['1', '27'] 
    19922 ['1', '27'] 
    19923 ['1', '37'] 
    19924 ['1', '37'] 
    19925 ['12'] 
    19926 ['1', '2'] 
    19927 ['11'] 
    19928 ['1', '1'] 
    19929 ['11'] 
    19930 ['1', '1'] 
    19931 ['1', '56'] 
    19932 ['1', '56'] 
    19933 ['1', '9'] 
    19934 ['1', '9'] 
    19935 ['1', '4'] 
    19936 ['1', '4'] 
    19937 ['12'] 
    19938 ['1', '2'] 
    19939 ['1', '3'] 
    19940 ['1', '3'] 
    19941 ['12'] 
    19942 ['1', '2'] 
    19943 ['1', '10'] 
    19944 ['1', '10'] 
    19945 ['1', '4'] 
    19946 ['1', '4'] 
    19947 ['11'] 
    19948 ['1', '1'] 
    19949 ['12'] 
    19950 ['1', '2'] 
    19951 ['1', '30'] 
    19952 ['1', '30'] 
    19953 ['3', '45'] 
    19954 ['3', '45'] 
    19955 ['1', '9'] 
    19956 ['1', '9'] 
    19957 ['12'] 
    19958 ['1', '2'] 
    19959 ['1', '59'] 
    19960 ['1', '59'] 
    19961 ['1', '13'] 
    19962 ['1', '13'] 
    19963 ['1', '34'] 
    19964 ['1', '34'] 
    19965 ['1', '5'] 
    19966 ['1', '5'] 
    19967 ['3', '25'] 
    19968 ['3', '25'] 
    19969 ['1', '4'] 
    19970 ['1', '4'] 
    19971 ['1', '3'] 
    19972 ['1', '3'] 
    19973 ['6', '20'] 
    19974 ['6', '20'] 
    19975 ['1', '11'] 
    19976 ['1', '11'] 
    19977 ['3', '39'] 
    19978 ['3', '39'] 
    19979 ['1', '27'] 
    19980 ['1', '27'] 
    19981 ['1', '21'] 
    19982 ['1', '21'] 
    19983 ['11'] 
    19984 ['1', '1'] 
    19985 ['1', '4'] 
    19986 ['1', '4'] 
    19987 ['2', '33'] 
    19988 ['2', '33'] 
    19989 ['11'] 
    19990 ['1', '1'] 
    19991 ['11'] 
    19992 ['1', '1'] 
    19993 ['12'] 
    19994 ['1', '2'] 
    19995 ['11'] 
    19996 ['1', '1'] 
    19997 ['11'] 
    19998 ['1', '1'] 
    19999 ['1', '8'] 
    20000 ['1', '8'] 
    20001 LtaP35.1590.mRNA_A 
    20002 LtaP35.1450.mRNA_A 
    20003 LtaP07.0060.mRNA_A 
    20004 LtaP32.3800.mRNA_A 
    20005 LtaP13.0770.mRNA_A 
    20006 sp|P14548.2|CYB_LEITA_A 
    20007 LtaP35.0210.mRNA_A 
    20008 GET91263.1_A 
    20009 LtaP35.0250.mRNA_A 
    20010 GET89654.1_A 
    20011 
    20012 > combine #15 close false name renamedAndRenumberedModel
    20013 
    20014 Renumering chain LtaP35.1590.mRNA_A 
    20015 ['1', '8'] 
    20016 
    20017 > select #16/GC
    20018 
    20019 66 atoms, 66 bonds, 8 residues, 1 model selected 
    20020 0 
    20021 17 
    20022 >17 
    20023 > renumber #16/GC start 17
    20024 
    20025 8 residues renumbered 
    20026 ['1', '1'] 
    20027 
    20028 > select #16/Bd
    20029 
    20030 4 atoms, 3 bonds, 1 residue, 1 model selected 
    20031 24 
    20032 25 
    20033 >1 
    20034 > renumber #16/Bd start 25
    20035 
    20036 1 residues renumbered 
    20037 
    20038 > changechains #16/Bd GC
    20039 
    20040 Chain IDs of 1 residues changed 
    20041 ['1', '1'] 
    20042 
    20043 > select #16/Ca
    20044 
    20045 4 atoms, 3 bonds, 1 residue, 1 model selected 
    20046 25 
    20047 26 
    20048 >1 
    20049 > renumber #16/Ca start 26
    20050 
    20051 1 residues renumbered 
    20052 
    20053 > changechains #16/Ca GC
    20054 
    20055 Chain IDs of 1 residues changed 
    20056 ['1', '3'] 
    20057 
    20058 > select #16/AP
    20059 
    20060 19 atoms, 19 bonds, 3 residues, 1 model selected 
    20061 26 
    20062 27 
    20063 >1 
    20064 > renumber #16/AP start 27
    20065 
    20066 3 residues renumbered 
    20067 
    20068 > changechains #16/AP GC
    20069 
    20070 Chain IDs of 3 residues changed 
    20071 ['1', '1'] 
    20072 
    20073 > select #16/BN
    20074 
    20075 6 atoms, 5 bonds, 1 residue, 1 model selected 
    20076 29 
    20077 30 
    20078 >1 
    20079 > renumber #16/BN start 30
    20080 
    20081 1 residues renumbered 
    20082 
    20083 > changechains #16/BN GC
    20084 
    20085 Chain IDs of 1 residues changed 
    20086 ['1', '4'] 
    20087 
    20088 > select #16/FF
    20089 
    20090 32 atoms, 32 bonds, 4 residues, 1 model selected 
    20091 30 
    20092 31 
    20093 >1 
    20094 > renumber #16/FF start 31
    20095 
    20096 4 residues renumbered 
    20097 
    20098 > changechains #16/FF GC
    20099 
    20100 Chain IDs of 4 residues changed 
    20101 ['1', '15'] 
    20102 
    20103 > select #16/Fo
    20104 
    20105 103 atoms, 106 bonds, 15 residues, 1 model selected 
    20106 34 
    20107 35 
    20108 >1 
    20109 > renumber #16/Fo start 35
    20110 
    20111 15 residues renumbered 
    20112 
    20113 > changechains #16/Fo GC
    20114 
    20115 Chain IDs of 15 residues changed 
    20116 ['1', '1'] 
    20117 
    20118 > select #16/Cy
    20119 
    20120 8 atoms, 7 bonds, 1 residue, 1 model selected 
    20121 49 
    20122 50 
    20123 >1 
    20124 > renumber #16/Cy start 50
    20125 
    20126 1 residues renumbered 
    20127 
    20128 > changechains #16/Cy GC
    20129 
    20130 Chain IDs of 1 residues changed 
    20131 ['1', '9'] 
    20132 
    20133 > select #16/EY
    20134 
    20135 66 atoms, 67 bonds, 9 residues, 1 model selected 
    20136 50 
    20137 51 
    20138 >1 
    20139 > renumber #16/EY start 51
    20140 
    20141 9 residues renumbered 
    20142 
    20143 > changechains #16/EY GC
    20144 
    20145 Chain IDs of 9 residues changed 
    20146 ['1', '4'] 
    20147 
    20148 > select #16/FV
    20149 
    20150 24 atoms, 23 bonds, 4 residues, 1 model selected 
    20151 59 
    20152 60 
    20153 >1 
    20154 > renumber #16/FV start 60
    20155 
    20156 4 residues renumbered 
    20157 
    20158 > changechains #16/FV GC
    20159 
    20160 Chain IDs of 4 residues changed 
    20161 ['1', '28'] 
    20162 
    20163 > select #16/Ey
    20164 
    20165 210 atoms, 213 bonds, 28 residues, 1 model selected 
    20166 63 
    20167 64 
    20168 >1 
    20169 > renumber #16/Ey start 64
    20170 
    20171 28 residues renumbered 
    20172 
    20173 > changechains #16/Ey GC
    20174 
    20175 Chain IDs of 28 residues changed 
    20176 ['1', '15'] 
    20177 
    20178 > select #16/K
    20179 
    20180 102 atoms, 102 bonds, 15 residues, 1 model selected 
    20181 91 
    20182 92 
    20183 >1 
    20184 > renumber #16/K start 92
    20185 
    20186 15 residues renumbered 
    20187 
    20188 > changechains #16/K GC
    20189 
    20190 Chain IDs of 15 residues changed 
    20191 ['7', '15'] 
    20192 
    20193 > select #16/L
    20194 
    20195 184 atoms, 187 bonds, 22 residues, 1 model selected 
    20196 106 
    20197 107 
    20198 >1 
    20199 > renumber #16/L start 107
    20200 
    20201 22 residues renumbered 
    20202 
    20203 > changechains #16/L GC
    20204 
    20205 Chain IDs of 22 residues changed 
    20206 ['2', '44'] 
    20207 
    20208 > select #16/Ee
    20209 
    20210 355 atoms, 363 bonds, 44 residues, 1 model selected 
    20211 128 
    20212 129 
    20213 >1 
    20214 > renumber #16/Ee start 129
    20215 
    20216 44 residues renumbered 
    20217 
    20218 > changechains #16/Ee GC
    20219 
    20220 Chain IDs of 44 residues changed 
    20221 Renumering chain LtaP35.1450.mRNA_A 
    20222 ['1', '7'] 
    20223 
    20224 > select #16/Gc
    20225 
    20226 52 atoms, 52 bonds, 7 residues, 1 model selected 
    20227 0 
    20228 2 
    20229 >2 
    20230 > renumber #16/Gc start 2
    20231 
    20232 7 residues renumbered 
    20233 ['1', '8'] 
    20234 
    20235 > select #16/Ex
    20236 
    20237 55 atoms, 56 bonds, 8 residues, 1 model selected 
    20238 8 
    20239 10 
    20240 >2 
    20241 > renumber #16/Ex start 10
    20242 
    20243 8 residues renumbered 
    20244 
    20245 > changechains #16/Ex Gc
    20246 
    20247 Chain IDs of 8 residues changed 
    20248 ['1', '13'] 
    20249 
    20250 > select #16/E6
    20251 
    20252 98 atoms, 100 bonds, 13 residues, 1 model selected 
    20253 17 
    20254 18 
    20255 >1 
    20256 > renumber #16/E6 start 18
    20257 
    20258 13 residues renumbered 
    20259 
    20260 > changechains #16/E6 Gc
    20261 
    20262 Chain IDs of 13 residues changed 
    20263 ['1', '1'] 
    20264 
    20265 > select #16/Ai
    20266 
    20267 11 atoms, 10 bonds, 1 residue, 1 model selected 
    20268 30 
    20269 31 
    20270 >1 
    20271 > renumber #16/Ai start 31
    20272 
    20273 1 residues renumbered 
    20274 
    20275 > changechains #16/Ai Gc
    20276 
    20277 Chain IDs of 1 residues changed 
    20278 ['1', '31'] 
    20279 
    20280 > select #16/0
    20281 
    20282 233 atoms, 235 bonds, 31 residues, 1 model selected 
    20283 31 
    20284 32 
    20285 >1 
    20286 > renumber #16/0 start 32
    20287 
    20288 31 residues renumbered 
    20289 
    20290 > changechains #16/0 Gc
    20291 
    20292 Chain IDs of 31 residues changed 
    20293 ['1', '2'] 
    20294 
    20295 > select #16/U
    20296 
    20297 11 atoms, 10 bonds, 2 residues, 1 model selected 
    20298 62 
    20299 63 
    20300 >1 
    20301 > renumber #16/U start 63
    20302 
    20303 2 residues renumbered 
    20304 
    20305 > changechains #16/U Gc
    20306 
    20307 Chain IDs of 2 residues changed 
    20308 ['6', '22'] 
    20309 
    20310 > select #16/d
    20311 
    20312 176 atoms, 182 bonds, 22 residues, 1 model selected 
    20313 64 
    20314 65 
    20315 >1 
    20316 > renumber #16/d start 65
    20317 
    20318 22 residues renumbered 
    20319 
    20320 > changechains #16/d Gc
    20321 
    20322 Chain IDs of 22 residues changed 
    20323 ['5', '21'] 
    20324 
    20325 > select #16/EV
    20326 
    20327 161 atoms, 160 bonds, 21 residues, 1 model selected 
    20328 86 
    20329 87 
    20330 >1 
    20331 > renumber #16/EV start 87
    20332 
    20333 21 residues renumbered 
    20334 
    20335 > changechains #16/EV Gc
    20336 
    20337 Chain IDs of 21 residues changed 
    20338 
    20339 > delete #16/Ew:132
    20340 
    20341 > renumber #16/Ew:133-9999999 start 132
    20342 
    20343 11 residues renumbered 
    20344 ['3', '139'] 
    20345 
    20346 > select #16/Ew
    20347 
    20348 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    20349 107 
    20350 108 
    20351 >1 
    20352 > renumber #16/Ew start 108
    20353 
    20354 142 residues renumbered 
    20355 
    20356 > changechains #16/Ew Gc
    20357 
    20358 Chain IDs of 142 residues changed 
    20359 ['1', '3'] 
    20360 
    20361 > select #16/GO
    20362 
    20363 18 atoms, 18 bonds, 3 residues, 1 model selected 
    20364 249 
    20365 250 
    20366 >1 
    20367 > renumber #16/GO start 250
    20368 
    20369 3 residues renumbered 
    20370 
    20371 > changechains #16/GO Gc
    20372 
    20373 Chain IDs of 3 residues changed 
    20374 ['1', '8'] 
    20375 
    20376 > select #16/Z
    20377 
    20378 69 atoms, 71 bonds, 8 residues, 1 model selected 
    20379 252 
    20380 253 
    20381 >1 
    20382 > renumber #16/Z start 253
    20383 
    20384 8 residues renumbered 
    20385 
    20386 > changechains #16/Z Gc
    20387 
    20388 Chain IDs of 8 residues changed 
    20389 ['2', '18'] 
    20390 
    20391 > select #16/ES
    20392 
    20393 163 atoms, 164 bonds, 18 residues, 1 model selected 
    20394 260 
    20395 262 
    20396 >2 
    20397 > renumber #16/ES start 262
    20398 
    20399 18 residues renumbered 
    20400 
    20401 > changechains #16/ES Gc
    20402 
    20403 Chain IDs of 18 residues changed 
    20404 ['1', '7'] 
    20405 
    20406 > select #16/Fc
    20407 
    20408 40 atoms, 41 bonds, 7 residues, 1 model selected 
    20409 279 
    20410 282 
    20411 >3 
    20412 > renumber #16/Fc start 282
    20413 
    20414 7 residues renumbered 
    20415 
    20416 > changechains #16/Fc Gc
    20417 
    20418 Chain IDs of 7 residues changed 
    20419 ['7', '12'] 
    20420 
    20421 > select #16/Fa
    20422 
    20423 177 atoms, 179 bonds, 24 residues, 1 model selected 
    20424 288 
    20425 289 
    20426 >1 
    20427 > renumber #16/Fa start 289
    20428 
    20429 24 residues renumbered 
    20430 
    20431 > changechains #16/Fa Gc
    20432 
    20433 Chain IDs of 24 residues changed 
    20434 ['1', '10'] 
    20435 
    20436 > select #16/2
    20437 
    20438 81 atoms, 83 bonds, 10 residues, 1 model selected 
    20439 312 
    20440 314 
    20441 >2 
    20442 > renumber #16/2 start 314
    20443 
    20444 10 residues renumbered 
    20445 
    20446 > changechains #16/2 Gc
    20447 
    20448 Chain IDs of 10 residues changed 
    20449 ['1', '2'] 
    20450 
    20451 > select #16/E
    20452 
    20453 16 atoms, 16 bonds, 2 residues, 1 model selected 
    20454 323 
    20455 326 
    20456 >3 
    20457 > renumber #16/E start 326
    20458 
    20459 2 residues renumbered 
    20460 
    20461 > changechains #16/E Gc
    20462 
    20463 Chain IDs of 2 residues changed 
    20464 ['1', '10'] 
    20465 
    20466 > select #16/Ff
    20467 
    20468 75 atoms, 76 bonds, 10 residues, 1 model selected 
    20469 327 
    20470 328 
    20471 >1 
    20472 > renumber #16/Ff start 328
    20473 
    20474 10 residues renumbered 
    20475 
    20476 > changechains #16/Ff Gc
    20477 
    20478 Chain IDs of 10 residues changed 
    20479 ['4', '63'] 
    20480 
    20481 > select #16/E2
    20482 
    20483 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    20484 337 
    20485 338 
    20486 >1 
    20487 > renumber #16/E2 start 338
    20488 
    20489 132 residues renumbered 
    20490 
    20491 > changechains #16/E2 Gc
    20492 
    20493 Chain IDs of 132 residues changed 
    20494 ['9', '11'] 
    20495 
    20496 > select #16/W
    20497 
    20498 182 atoms, 189 bonds, 20 residues, 1 model selected 
    20499 469 
    20500 470 
    20501 >1 
    20502 > renumber #16/W start 470
    20503 
    20504 20 residues renumbered 
    20505 
    20506 > changechains #16/W Gc
    20507 
    20508 Chain IDs of 20 residues changed 
    20509 ['1', '1'] 
    20510 
    20511 > select #16/BM
    20512 
    20513 7 atoms, 6 bonds, 1 residue, 1 model selected 
    20514 489 
    20515 490 
    20516 >1 
    20517 > renumber #16/BM start 490
    20518 
    20519 1 residues renumbered 
    20520 
    20521 > changechains #16/BM Gc
    20522 
    20523 Chain IDs of 1 residues changed 
    20524 Renumering chain LtaP07.0060.mRNA_A 
    20525 ['1', '5'] 
    20526 
    20527 > select #16/A
    20528 
    20529 32 atoms, 33 bonds, 5 residues, 1 model selected 
    20530 0 
    20531 5 
    20532 >5 
    20533 > renumber #16/A start 5
    20534 
    20535 5 residues renumbered 
    20536 ['5', '33'] 
    20537 
    20538 > select #16/Fd
    20539 
    20540 314 atoms, 324 bonds, 36 residues, 1 model selected 
    20541 9 
    20542 10 
    20543 >1 
    20544 > renumber #16/Fd start 10
    20545 
    20546 36 residues renumbered 
    20547 
    20548 > changechains #16/Fd A
    20549 
    20550 Chain IDs of 36 residues changed 
    20551 ['1', '4'] 
    20552 
    20553 > select #16/Ef
    20554 
    20555 24 atoms, 23 bonds, 4 residues, 1 model selected 
    20556 45 
    20557 46 
    20558 >1 
    20559 > renumber #16/Ef start 46
    20560 
    20561 4 residues renumbered 
    20562 
    20563 > changechains #16/Ef A
    20564 
    20565 Chain IDs of 4 residues changed 
    20566 ['1', '74'] 
    20567 
    20568 > select #16/Eg
    20569 
    20570 577 atoms, 589 bonds, 74 residues, 1 model selected 
    20571 49 
    20572 50 
    20573 >1 
    20574 > renumber #16/Eg start 50
    20575 
    20576 74 residues renumbered 
    20577 
    20578 > changechains #16/Eg A
    20579 
    20580 Chain IDs of 74 residues changed 
    20581 ['3', '18'] 
    20582 
    20583 > select #16/j
    20584 
    20585 160 atoms, 162 bonds, 22 residues, 1 model selected 
    20586 123 
    20587 124 
    20588 >1 
    20589 > renumber #16/j start 124
    20590 
    20591 22 residues renumbered 
    20592 
    20593 > changechains #16/j A
    20594 
    20595 Chain IDs of 22 residues changed 
    20596 
    20597 > renumber #16/Ei:7-9999999 start 8
    20598 
    20599 19 residues renumbered 
    20600 
    20601 > ~bond #16/Ei:6@C #16/Ei:8@N
    20602 
    20603 ['2', '21'] 
    20604 
    20605 > select #16/Ei
    20606 
    20607 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    20608 145 
    20609 145 
    20610 >0 
    20611 
    20612 > delete #16/Ei:1
    20613 
    20614 > renumber #16/Ei start 146
    20615 
    20616 24 residues renumbered 
    20617 
    20618 > changechains #16/Ei A
    20619 
    20620 Chain IDs of 24 residues changed 
    20621 ['1', '4'] 
    20622 
    20623 > select #16/Bi
    20624 
    20625 23 atoms, 22 bonds, 4 residues, 1 model selected 
    20626 170 
    20627 168 
    20628 >-2 
    20629 
    20630 > delete #16/Bi:3
    20631 
    20632 > delete #16/Bi:2
    20633 
    20634 > delete #16/Bi:1
    20635 
    20636 > renumber #16/Bi start 171
    20637 
    20638 1 residues renumbered 
    20639 
    20640 > changechains #16/Bi A
    20641 
    20642 Chain IDs of 1 residues changed 
    20643 ['1', '3'] 
    20644 
    20645 > select #16/GM
    20646 
    20647 21 atoms, 20 bonds, 3 residues, 1 model selected 
    20648 171 
    20649 171 
    20650 >0 
    20651 
    20652 > delete #16/GM:1
    20653 
    20654 > renumber #16/GM start 172
    20655 
    20656 2 residues renumbered 
    20657 
    20658 > changechains #16/GM A
    20659 
    20660 Chain IDs of 2 residues changed 
    20661 ['2', '81'] 
    20662 
    20663 > select #16/E8
    20664 
    20665 695 atoms, 717 bonds, 86 residues, 1 model selected 
    20666 173 
    20667 174 
    20668 >1 
    20669 > renumber #16/E8 start 174
    20670 
    20671 86 residues renumbered 
    20672 
    20673 > changechains #16/E8 A
    20674 
    20675 Chain IDs of 86 residues changed 
    20676 Renumering chain LtaP32.3800.mRNA_A 
    20677 ['1', '8'] 
    20678 
    20679 > select #16/N
    20680 
    20681 66 atoms, 69 bonds, 8 residues, 1 model selected 
    20682 0 
    20683 34 
    20684 >34 
    20685 > renumber #16/N start 34
    20686 
    20687 8 residues renumbered 
    20688 ['1', '5'] 
    20689 
    20690 > select #16/GZ
    20691 
    20692 35 atoms, 34 bonds, 5 residues, 1 model selected 
    20693 41 
    20694 42 
    20695 >1 
    20696 > renumber #16/GZ start 42
    20697 
    20698 5 residues renumbered 
    20699 
    20700 > changechains #16/GZ N
    20701 
    20702 Chain IDs of 5 residues changed 
    20703 ['14', '47'] 
    20704 
    20705 > select #16/FT
    20706 
    20707 810 atoms, 833 bonds, 101 residues, 1 model selected 
    20708 46 
    20709 47 
    20710 >1 
    20711 > renumber #16/FT start 47
    20712 
    20713 101 residues renumbered 
    20714 
    20715 > changechains #16/FT N
    20716 
    20717 Chain IDs of 101 residues changed 
    20718 Renumering chain LtaP13.0770.mRNA_A 
    20719 ['1', '5'] 
    20720 
    20721 > select #16/4
    20722 
    20723 50 atoms, 51 bonds, 5 residues, 1 model selected 
    20724 0 
    20725 25 
    20726 >25 
    20727 > renumber #16/4 start 25
    20728 
    20729 5 residues renumbered 
    20730 ['1', '3'] 
    20731 
    20732 > select #16/D
    20733 
    20734 20 atoms, 20 bonds, 3 residues, 1 model selected 
    20735 29 
    20736 30 
    20737 >1 
    20738 > renumber #16/D start 30
    20739 
    20740 3 residues renumbered 
    20741 
    20742 > changechains #16/D 4
    20743 
    20744 Chain IDs of 3 residues changed 
    20745 ['1', '1'] 
    20746 
    20747 > select #16/CN
    20748 
    20749 6 atoms, 5 bonds, 1 residue, 1 model selected 
    20750 32 
    20751 33 
    20752 >1 
    20753 > renumber #16/CN start 33
    20754 
    20755 1 residues renumbered 
    20756 
    20757 > changechains #16/CN 4
    20758 
    20759 Chain IDs of 1 residues changed 
    20760 ['1', '7'] 
    20761 
    20762 > select #16/FG
    20763 
    20764 48 atoms, 48 bonds, 7 residues, 1 model selected 
    20765 33 
    20766 34 
    20767 >1 
    20768 > renumber #16/FG start 34
    20769 
    20770 7 residues renumbered 
    20771 
    20772 > changechains #16/FG 4
    20773 
    20774 Chain IDs of 7 residues changed 
    20775 ['1', '14'] 
    20776 
    20777 > select #16/GH
    20778 
    20779 92 atoms, 92 bonds, 14 residues, 1 model selected 
    20780 40 
    20781 57 
    20782 >17 
    20783 > renumber #16/GH start 57
    20784 
    20785 14 residues renumbered 
    20786 
    20787 > changechains #16/GH 4
    20788 
    20789 Chain IDs of 14 residues changed 
    20790 ['1', '5'] 
    20791 
    20792 > select #16/GW
    20793 
    20794 46 atoms, 46 bonds, 5 residues, 1 model selected 
    20795 70 
    20796 71 
    20797 >1 
    20798 > renumber #16/GW start 71
    20799 
    20800 5 residues renumbered 
    20801 
    20802 > changechains #16/GW 4
    20803 
    20804 Chain IDs of 5 residues changed 
    20805 ['1', '4'] 
    20806 
    20807 > select #16/Fj
    20808 
    20809 24 atoms, 23 bonds, 4 residues, 1 model selected 
    20810 75 
    20811 76 
    20812 >1 
    20813 > renumber #16/Fj start 76
    20814 
    20815 4 residues renumbered 
    20816 
    20817 > changechains #16/Fj 4
    20818 
    20819 Chain IDs of 4 residues changed 
    20820 ['1', '7'] 
    20821 
    20822 > select #16/E4
    20823 
    20824 48 atoms, 48 bonds, 7 residues, 1 model selected 
    20825 79 
    20826 80 
    20827 >1 
    20828 > renumber #16/E4 start 80
    20829 
    20830 7 residues renumbered 
    20831 
    20832 > changechains #16/E4 4
    20833 
    20834 Chain IDs of 7 residues changed 
    20835 ['1', '14'] 
    20836 
    20837 > select #16/Er
    20838 
    20839 99 atoms, 102 bonds, 14 residues, 1 model selected 
    20840 86 
    20841 87 
    20842 >1 
    20843 > renumber #16/Er start 87
    20844 
    20845 14 residues renumbered 
    20846 
    20847 > changechains #16/Er 4
    20848 
    20849 Chain IDs of 14 residues changed 
    20850 ['1', '25'] 
    20851 
    20852 > select #16/ER
    20853 
    20854 208 atoms, 211 bonds, 25 residues, 1 model selected 
    20855 100 
    20856 101 
    20857 >1 
    20858 > renumber #16/ER start 101
    20859 
    20860 25 residues renumbered 
    20861 
    20862 > changechains #16/ER 4
    20863 
    20864 Chain IDs of 25 residues changed 
    20865 ['1', '20'] 
    20866 
    20867 > select #16/Fz
    20868 
    20869 146 atoms, 147 bonds, 20 residues, 1 model selected 
    20870 125 
    20871 124 
    20872 >-1 
    20873 
    20874 > delete #16/Fz:2
    20875 
    20876 > delete #16/Fz:1
    20877 
    20878 > renumber #16/Fz start 126
    20879 
    20880 18 residues renumbered 
    20881 
    20882 > changechains #16/Fz 4
    20883 
    20884 Chain IDs of 18 residues changed 
    20885 ['1', '8'] 
    20886 
    20887 > select #16/p
    20888 
    20889 62 atoms, 62 bonds, 8 residues, 1 model selected 
    20890 143 
    20891 144 
    20892 >1 
    20893 > renumber #16/p start 144
    20894 
    20895 8 residues renumbered 
    20896 
    20897 > changechains #16/p 4
    20898 
    20899 Chain IDs of 8 residues changed 
    20900 ['1', '1'] 
    20901 
    20902 > select #16/Dk
    20903 
    20904 8 atoms, 7 bonds, 1 residue, 1 model selected 
    20905 151 
    20906 152 
    20907 >1 
    20908 > renumber #16/Dk start 152
    20909 
    20910 1 residues renumbered 
    20911 
    20912 > changechains #16/Dk 4
    20913 
    20914 Chain IDs of 1 residues changed 
    20915 ['1', '2'] 
    20916 
    20917 > select #16/Bz
    20918 
    20919 16 atoms, 15 bonds, 2 residues, 1 model selected 
    20920 152 
    20921 153 
    20922 >1 
    20923 > renumber #16/Bz start 153
    20924 
    20925 2 residues renumbered 
    20926 
    20927 > changechains #16/Bz 4
    20928 
    20929 Chain IDs of 2 residues changed 
    20930 ['1', '2'] 
    20931 
    20932 > select #16/Br
    20933 
    20934 11 atoms, 10 bonds, 2 residues, 1 model selected 
    20935 154 
    20936 155 
    20937 >1 
    20938 > renumber #16/Br start 155
    20939 
    20940 2 residues renumbered 
    20941 
    20942 > changechains #16/Br 4
    20943 
    20944 Chain IDs of 2 residues changed 
    20945 ['1', '18'] 
    20946 
    20947 > select #16/F6
    20948 
    20949 144 atoms, 146 bonds, 18 residues, 1 model selected 
    20950 156 
    20951 181 
    20952 >25 
    20953 > renumber #16/F6 start 181
    20954 
    20955 18 residues renumbered 
    20956 
    20957 > changechains #16/F6 4
    20958 
    20959 Chain IDs of 18 residues changed 
    20960 ['1', '70'] 
    20961 
    20962 > select #16/q
    20963 
    20964 576 atoms, 590 bonds, 70 residues, 1 model selected 
    20965 198 
    20966 200 
    20967 >2 
    20968 > renumber #16/q start 200
    20969 
    20970 70 residues renumbered 
    20971 
    20972 > changechains #16/q 4
    20973 
    20974 Chain IDs of 70 residues changed 
    20975 ['1', '2'] 
    20976 
    20977 > select #16/Aw
    20978 
    20979 14 atoms, 13 bonds, 2 residues, 1 model selected 
    20980 269 
    20981 270 
    20982 >1 
    20983 > renumber #16/Aw start 270
    20984 
    20985 2 residues renumbered 
    20986 
    20987 > changechains #16/Aw 4
    20988 
    20989 Chain IDs of 2 residues changed 
    20990 ['1', '2'] 
    20991 
    20992 > select #16/X
    20993 
    20994 12 atoms, 11 bonds, 2 residues, 1 model selected 
    20995 271 
    20996 272 
    20997 >1 
    20998 > renumber #16/X start 272
    20999 
    21000 2 residues renumbered 
    21001 
    21002 > changechains #16/X 4
    21003 
    21004 Chain IDs of 2 residues changed 
    21005 ['1', '12'] 
    21006 
    21007 > select #16/Y
    21008 
    21009 92 atoms, 95 bonds, 12 residues, 1 model selected 
    21010 273 
    21011 274 
    21012 >1 
    21013 > renumber #16/Y start 274
    21014 
    21015 12 residues renumbered 
    21016 
    21017 > changechains #16/Y 4
    21018 
    21019 Chain IDs of 12 residues changed 
    21020 ['1', '5'] 
    21021 
    21022 > select #16/9
    21023 
    21024 41 atoms, 42 bonds, 5 residues, 1 model selected 
    21025 285 
    21026 286 
    21027 >1 
    21028 > renumber #16/9 start 286
    21029 
    21030 5 residues renumbered 
    21031 
    21032 > changechains #16/9 4
    21033 
    21034 Chain IDs of 5 residues changed 
    21035 ['1', '14'] 
    21036 
    21037 > select #16/c
    21038 
    21039 112 atoms, 116 bonds, 14 residues, 1 model selected 
    21040 290 
    21041 290 
    21042 >0 
    21043 
    21044 > delete #16/c:1
    21045 
    21046 > renumber #16/c start 291
    21047 
    21048 13 residues renumbered 
    21049 
    21050 > changechains #16/c 4
    21051 
    21052 Chain IDs of 13 residues changed 
    21053 ['1', '3'] 
    21054 
    21055 > select #16/Ge
    21056 
    21057 15 atoms, 14 bonds, 3 residues, 1 model selected 
    21058 303 
    21059 304 
    21060 >1 
    21061 > renumber #16/Ge start 304
    21062 
    21063 3 residues renumbered 
    21064 
    21065 > changechains #16/Ge 4
    21066 
    21067 Chain IDs of 3 residues changed 
    21068 ['1', '2'] 
    21069 
    21070 > select #16/Du
    21071 
    21072 13 atoms, 12 bonds, 2 residues, 1 model selected 
    21073 306 
    21074 309 
    21075 >3 
    21076 > renumber #16/Du start 309
    21077 
    21078 2 residues renumbered 
    21079 
    21080 > changechains #16/Du 4
    21081 
    21082 Chain IDs of 2 residues changed 
    21083 ['1', '3'] 
    21084 
    21085 > select #16/Ad
    21086 
    21087 18 atoms, 18 bonds, 3 residues, 1 model selected 
    21088 310 
    21089 311 
    21090 >1 
    21091 > renumber #16/Ad start 311
    21092 
    21093 3 residues renumbered 
    21094 
    21095 > changechains #16/Ad 4
    21096 
    21097 Chain IDs of 3 residues changed 
    21098 ['1', '7'] 
    21099 
    21100 > select #16/t
    21101 
    21102 50 atoms, 50 bonds, 7 residues, 1 model selected 
    21103 313 
    21104 314 
    21105 >1 
    21106 > renumber #16/t start 314
    21107 
    21108 7 residues renumbered 
    21109 
    21110 > changechains #16/t 4
    21111 
    21112 Chain IDs of 7 residues changed 
    21113 ['1', '32'] 
    21114 
    21115 > select #16/FU
    21116 
    21117 251 atoms, 254 bonds, 32 residues, 1 model selected 
    21118 320 
    21119 321 
    21120 >1 
    21121 > renumber #16/FU start 321
    21122 
    21123 32 residues renumbered 
    21124 
    21125 > changechains #16/FU 4
    21126 
    21127 Chain IDs of 32 residues changed 
    21128 ['1', '1'] 
    21129 
    21130 > select #16/By
    21131 
    21132 11 atoms, 10 bonds, 1 residue, 1 model selected 
    21133 352 
    21134 353 
    21135 >1 
    21136 > renumber #16/By start 353
    21137 
    21138 1 residues renumbered 
    21139 
    21140 > changechains #16/By 4
    21141 
    21142 Chain IDs of 1 residues changed 
    21143 ['1', '2'] 
    21144 
    21145 > select #16/AH
    21146 
    21147 13 atoms, 12 bonds, 2 residues, 1 model selected 
    21148 353 
    21149 354 
    21150 >1 
    21151 > renumber #16/AH start 354
    21152 
    21153 2 residues renumbered 
    21154 
    21155 > changechains #16/AH 4
    21156 
    21157 Chain IDs of 2 residues changed 
    21158 ['9', '18'] 
    21159 
    21160 > select #16/GV
    21161 
    21162 182 atoms, 182 bonds, 24 residues, 1 model selected 
    21163 355 
    21164 356 
    21165 >1 
    21166 > renumber #16/GV start 356
    21167 
    21168 24 residues renumbered 
    21169 
    21170 > changechains #16/GV 4
    21171 
    21172 Chain IDs of 24 residues changed 
    21173 ['1', '1'] 
    21174 
    21175 > select #16/Dq
    21176 
    21177 4 atoms, 3 bonds, 1 residue, 1 model selected 
    21178 379 
    21179 380 
    21180 >1 
    21181 > renumber #16/Dq start 380
    21182 
    21183 1 residues renumbered 
    21184 
    21185 > changechains #16/Dq 4
    21186 
    21187 Chain IDs of 1 residues changed 
    21188 ['1', '4'] 
    21189 
    21190 > select #16/GT
    21191 
    21192 28 atoms, 27 bonds, 4 residues, 1 model selected 
    21193 380 
    21194 381 
    21195 >1 
    21196 > renumber #16/GT start 381
    21197 
    21198 4 residues renumbered 
    21199 
    21200 > changechains #16/GT 4
    21201 
    21202 Chain IDs of 4 residues changed 
    21203 ['1', '2'] 
    21204 
    21205 > select #16/DS
    21206 
    21207 15 atoms, 15 bonds, 2 residues, 1 model selected 
    21208 384 
    21209 387 
    21210 >3 
    21211 > renumber #16/DS start 387
    21212 
    21213 2 residues renumbered 
    21214 
    21215 > changechains #16/DS 4
    21216 
    21217 Chain IDs of 2 residues changed 
    21218 ['1', '10'] 
    21219 
    21220 > select #16/Fp
    21221 
    21222 76 atoms, 78 bonds, 10 residues, 1 model selected 
    21223 388 
    21224 389 
    21225 >1 
    21226 > renumber #16/Fp start 389
    21227 
    21228 10 residues renumbered 
    21229 
    21230 > changechains #16/Fp 4
    21231 
    21232 Chain IDs of 10 residues changed 
    21233 ['1', '5'] 
    21234 
    21235 > select #16/7
    21236 
    21237 37 atoms, 37 bonds, 5 residues, 1 model selected 
    21238 398 
    21239 399 
    21240 >1 
    21241 > renumber #16/7 start 399
    21242 
    21243 5 residues renumbered 
    21244 
    21245 > changechains #16/7 4
    21246 
    21247 Chain IDs of 5 residues changed 
    21248 ['1', '2'] 
    21249 
    21250 > select #16/8
    21251 
    21252 16 atoms, 15 bonds, 2 residues, 1 model selected 
    21253 403 
    21254 404 
    21255 >1 
    21256 > renumber #16/8 start 404
    21257 
    21258 2 residues renumbered 
    21259 
    21260 > changechains #16/8 4
    21261 
    21262 Chain IDs of 2 residues changed 
    21263 ['1', '20'] 
    21264 
    21265 > select #16/FJ
    21266 
    21267 149 atoms, 150 bonds, 20 residues, 1 model selected 
    21268 405 
    21269 407 
    21270 >2 
    21271 > renumber #16/FJ start 407
    21272 
    21273 20 residues renumbered 
    21274 
    21275 > changechains #16/FJ 4
    21276 
    21277 Chain IDs of 20 residues changed 
    21278 ['1', '7'] 
    21279 
    21280 > select #16/Fu
    21281 
    21282 53 atoms, 53 bonds, 7 residues, 1 model selected 
    21283 426 
    21284 426 
    21285 >0 
    21286 
    21287 > delete #16/Fu:1
    21288 
    21289 > renumber #16/Fu start 427
    21290 
    21291 6 residues renumbered 
    21292 
    21293 > changechains #16/Fu 4
    21294 
    21295 Chain IDs of 6 residues changed 
    21296 ['1', '1'] 
    21297 
    21298 > select #16/D6
    21299 
    21300 8 atoms, 7 bonds, 1 residue, 1 model selected 
    21301 432 
    21302 469 
    21303 >37 
    21304 > renumber #16/D6 start 469
    21305 
    21306 1 residues renumbered 
    21307 
    21308 > changechains #16/D6 4
    21309 
    21310 Chain IDs of 1 residues changed 
    21311 ['1', '2'] 
    21312 
    21313 > select #16/Dl
    21314 
    21315 8 atoms, 7 bonds, 2 residues, 1 model selected 
    21316 469 
    21317 470 
    21318 >1 
    21319 > renumber #16/Dl start 470
    21320 
    21321 2 residues renumbered 
    21322 
    21323 > changechains #16/Dl 4
    21324 
    21325 Chain IDs of 2 residues changed 
    21326 ['1', '1'] 
    21327 
    21328 > select #16/DK
    21329 
    21330 9 atoms, 8 bonds, 1 residue, 1 model selected 
    21331 471 
    21332 472 
    21333 >1 
    21334 > renumber #16/DK start 472
    21335 
    21336 1 residues renumbered 
    21337 
    21338 > changechains #16/DK 4
    21339 
    21340 Chain IDs of 1 residues changed 
    21341 ['1', '1'] 
    21342 
    21343 > select #16/Dt
    21344 
    21345 9 atoms, 8 bonds, 1 residue, 1 model selected 
    21346 472 
    21347 473 
    21348 >1 
    21349 > renumber #16/Dt start 473
    21350 
    21351 1 residues renumbered 
    21352 
    21353 > changechains #16/Dt 4
    21354 
    21355 Chain IDs of 1 residues changed 
    21356 ['1', '2'] 
    21357 
    21358 > select #16/C2
    21359 
    21360 10 atoms, 9 bonds, 2 residues, 1 model selected 
    21361 473 
    21362 474 
    21363 >1 
    21364 > renumber #16/C2 start 474
    21365 
    21366 2 residues renumbered 
    21367 
    21368 > changechains #16/C2 4
    21369 
    21370 Chain IDs of 2 residues changed 
    21371 ['1', '3'] 
    21372 
    21373 > select #16/GR
    21374 
    21375 19 atoms, 18 bonds, 3 residues, 1 model selected 
    21376 475 
    21377 476 
    21378 >1 
    21379 > renumber #16/GR start 476
    21380 
    21381 3 residues renumbered 
    21382 
    21383 > changechains #16/GR 4
    21384 
    21385 Chain IDs of 3 residues changed 
    21386 ['1', '12'] 
    21387 
    21388 > select #16/FK
    21389 
    21390 87 atoms, 88 bonds, 12 residues, 1 model selected 
    21391 478 
    21392 511 
    21393 >33 
    21394 > renumber #16/FK start 511
    21395 
    21396 12 residues renumbered 
    21397 
    21398 > changechains #16/FK 4
    21399 
    21400 Chain IDs of 12 residues changed 
    21401 ['1', '3'] 
    21402 
    21403 > select #16/Gb
    21404 
    21405 19 atoms, 18 bonds, 3 residues, 1 model selected 
    21406 522 
    21407 524 
    21408 >2 
    21409 > renumber #16/Gb start 524
    21410 
    21411 3 residues renumbered 
    21412 
    21413 > changechains #16/Gb 4
    21414 
    21415 Chain IDs of 3 residues changed 
    21416 Renumering chain sp|P14548.2|CYB_LEITA_A 
    21417 ['2', '15'] 
    21418 
    21419 > select #16/FI
    21420 
    21421 436 atoms, 446 bonds, 53 residues, 1 model selected 
    21422 0 
    21423 2 
    21424 >2 
    21425 > renumber #16/FI start 2
    21426 
    21427 53 residues renumbered 
    21428 ['1', '1'] 
    21429 
    21430 > select #16/BA
    21431 
    21432 11 atoms, 11 bonds, 1 residue, 1 model selected 
    21433 54 
    21434 55 
    21435 >1 
    21436 > renumber #16/BA start 55
    21437 
    21438 1 residues renumbered 
    21439 
    21440 > changechains #16/BA FI
    21441 
    21442 Chain IDs of 1 residues changed 
    21443 ['1', '1'] 
    21444 
    21445 > select #16/B9
    21446 
    21447 5 atoms, 4 bonds, 1 residue, 1 model selected 
    21448 55 
    21449 56 
    21450 >1 
    21451 > renumber #16/B9 start 56
    21452 
    21453 1 residues renumbered 
    21454 
    21455 > changechains #16/B9 FI
    21456 
    21457 Chain IDs of 1 residues changed 
    21458 ['1', '153'] 
    21459 
    21460 > select #16/Ej
    21461 
    21462 1293 atoms, 1333 bonds, 153 residues, 1 model selected 
    21463 56 
    21464 57 
    21465 >1 
    21466 > renumber #16/Ej start 57
    21467 
    21468 153 residues renumbered 
    21469 
    21470 > changechains #16/Ej FI
    21471 
    21472 Chain IDs of 153 residues changed 
    21473 ['1', '1'] 
    21474 
    21475 > select #16/AC
    21476 
    21477 12 atoms, 12 bonds, 1 residue, 1 model selected 
    21478 209 
    21479 210 
    21480 >1 
    21481 > renumber #16/AC start 210
    21482 
    21483 1 residues renumbered 
    21484 
    21485 > changechains #16/AC FI
    21486 
    21487 Chain IDs of 1 residues changed 
    21488 ['1', '39'] 
    21489 
    21490 > select #16/k
    21491 
    21492 358 atoms, 372 bonds, 39 residues, 1 model selected 
    21493 210 
    21494 211 
    21495 >1 
    21496 > renumber #16/k start 211
    21497 
    21498 39 residues renumbered 
    21499 
    21500 > changechains #16/k FI
    21501 
    21502 Chain IDs of 39 residues changed 
    21503 ['1', '27'] 
    21504 
    21505 > select #16/Fn
    21506 
    21507 200 atoms, 203 bonds, 27 residues, 1 model selected 
    21508 249 
    21509 250 
    21510 >1 
    21511 > renumber #16/Fn start 250
    21512 
    21513 27 residues renumbered 
    21514 
    21515 > changechains #16/Fn FI
    21516 
    21517 Chain IDs of 27 residues changed 
    21518 ['1', '37'] 
    21519 
    21520 > select #16/o
    21521 
    21522 318 atoms, 331 bonds, 37 residues, 1 model selected 
    21523 276 
    21524 276 
    21525 >0 
    21526 
    21527 > delete #16/o:1
    21528 
    21529 > renumber #16/o start 277
    21530 
    21531 36 residues renumbered 
    21532 
    21533 > changechains #16/o FI
    21534 
    21535 Chain IDs of 36 residues changed 
    21536 ['1', '2'] 
    21537 
    21538 > select #16/AE
    21539 
    21540 22 atoms, 23 bonds, 2 residues, 1 model selected 
    21541 312 
    21542 313 
    21543 >1 
    21544 > renumber #16/AE start 313
    21545 
    21546 2 residues renumbered 
    21547 
    21548 > changechains #16/AE FI
    21549 
    21550 Chain IDs of 2 residues changed 
    21551 ['1', '1'] 
    21552 
    21553 > select #16/C8
    21554 
    21555 7 atoms, 7 bonds, 1 residue, 1 model selected 
    21556 314 
    21557 318 
    21558 >4 
    21559 > renumber #16/C8 start 318
    21560 
    21561 1 residues renumbered 
    21562 
    21563 > changechains #16/C8 FI
    21564 
    21565 Chain IDs of 1 residues changed 
    21566 ['1', '1'] 
    21567 
    21568 > select #16/Bo
    21569 
    21570 14 atoms, 15 bonds, 1 residue, 1 model selected 
    21571 318 
    21572 319 
    21573 >1 
    21574 > renumber #16/Bo start 319
    21575 
    21576 1 residues renumbered 
    21577 
    21578 > changechains #16/Bo FI
    21579 
    21580 Chain IDs of 1 residues changed 
    21581 ['1', '56'] 
    21582 
    21583 > select #16/Ep
    21584 
    21585 472 atoms, 486 bonds, 56 residues, 1 model selected 
    21586 319 
    21587 320 
    21588 >1 
    21589 > renumber #16/Ep start 320
    21590 
    21591 56 residues renumbered 
    21592 
    21593 > changechains #16/Ep FI
    21594 
    21595 Chain IDs of 56 residues changed 
    21596 Renumering chain LtaP35.0210.mRNA_A 
    21597 ['1', '9'] 
    21598 
    21599 > select #16/GU
    21600 
    21601 72 atoms, 72 bonds, 9 residues, 1 model selected 
    21602 0 
    21603 1 
    21604 >1 
    21605 > renumber #16/GU start 1
    21606 
    21607 0 residues renumbered 
    21608 ['1', '4'] 
    21609 
    21610 > select #16/FE
    21611 
    21612 28 atoms, 28 bonds, 4 residues, 1 model selected 
    21613 9 
    21614 10 
    21615 >1 
    21616 > renumber #16/FE start 10
    21617 
    21618 4 residues renumbered 
    21619 
    21620 > changechains #16/FE GU
    21621 
    21622 Chain IDs of 4 residues changed 
    21623 ['1', '2'] 
    21624 
    21625 > select #16/Az
    21626 
    21627 12 atoms, 11 bonds, 2 residues, 1 model selected 
    21628 13 
    21629 14 
    21630 >1 
    21631 > renumber #16/Az start 14
    21632 
    21633 2 residues renumbered 
    21634 
    21635 > changechains #16/Az GU
    21636 
    21637 Chain IDs of 2 residues changed 
    21638 ['1', '3'] 
    21639 
    21640 > select #16/J
    21641 
    21642 21 atoms, 20 bonds, 3 residues, 1 model selected 
    21643 15 
    21644 16 
    21645 >1 
    21646 > renumber #16/J start 16
    21647 
    21648 3 residues renumbered 
    21649 
    21650 > changechains #16/J GU
    21651 
    21652 Chain IDs of 3 residues changed 
    21653 ['1', '2'] 
    21654 
    21655 > select #16/AK
    21656 
    21657 12 atoms, 11 bonds, 2 residues, 1 model selected 
    21658 18 
    21659 19 
    21660 >1 
    21661 > renumber #16/AK start 19
    21662 
    21663 2 residues renumbered 
    21664 
    21665 > changechains #16/AK GU
    21666 
    21667 Chain IDs of 2 residues changed 
    21668 ['1', '10'] 
    21669 
    21670 > select #16/h
    21671 
    21672 86 atoms, 88 bonds, 10 residues, 1 model selected 
    21673 20 
    21674 21 
    21675 >1 
    21676 > renumber #16/h start 21
    21677 
    21678 10 residues renumbered 
    21679 
    21680 > changechains #16/h GU
    21681 
    21682 Chain IDs of 10 residues changed 
    21683 ['1', '4'] 
    21684 
    21685 > select #16/i
    21686 
    21687 44 atoms, 46 bonds, 4 residues, 1 model selected 
    21688 30 
    21689 31 
    21690 >1 
    21691 > renumber #16/i start 31
    21692 
    21693 4 residues renumbered 
    21694 
    21695 > changechains #16/i GU
    21696 
    21697 Chain IDs of 4 residues changed 
    21698 ['1', '1'] 
    21699 
    21700 > select #16/Cw
    21701 
    21702 8 atoms, 7 bonds, 1 residue, 1 model selected 
    21703 34 
    21704 35 
    21705 >1 
    21706 > renumber #16/Cw start 35
    21707 
    21708 1 residues renumbered 
    21709 
    21710 > changechains #16/Cw GU
    21711 
    21712 Chain IDs of 1 residues changed 
    21713 ['1', '2'] 
    21714 
    21715 > select #16/As
    21716 
    21717 16 atoms, 16 bonds, 2 residues, 1 model selected 
    21718 35 
    21719 36 
    21720 >1 
    21721 > renumber #16/As start 36
    21722 
    21723 2 residues renumbered 
    21724 
    21725 > changechains #16/As GU
    21726 
    21727 Chain IDs of 2 residues changed 
    21728 ['1', '30'] 
    21729 
    21730 > select #16/r
    21731 
    21732 242 atoms, 242 bonds, 30 residues, 1 model selected 
    21733 37 
    21734 38 
    21735 >1 
    21736 > renumber #16/r start 38
    21737 
    21738 30 residues renumbered 
    21739 
    21740 > changechains #16/r GU
    21741 
    21742 Chain IDs of 30 residues changed 
    21743 ['3', '45'] 
    21744 
    21745 > select #16/E5
    21746 
    21747 401 atoms, 418 bonds, 48 residues, 1 model selected 
    21748 67 
    21749 68 
    21750 >1 
    21751 > renumber #16/E5 start 68
    21752 
    21753 48 residues renumbered 
    21754 
    21755 > changechains #16/E5 GU
    21756 
    21757 Chain IDs of 48 residues changed 
    21758 ['1', '9'] 
    21759 
    21760 > select #16/l
    21761 
    21762 68 atoms, 68 bonds, 9 residues, 1 model selected 
    21763 115 
    21764 116 
    21765 >1 
    21766 > renumber #16/l start 116
    21767 
    21768 9 residues renumbered 
    21769 
    21770 > changechains #16/l GU
    21771 
    21772 Chain IDs of 9 residues changed 
    21773 ['1', '2'] 
    21774 
    21775 > select #16/BD
    21776 
    21777 11 atoms, 10 bonds, 2 residues, 1 model selected 
    21778 124 
    21779 125 
    21780 >1 
    21781 > renumber #16/BD start 125
    21782 
    21783 2 residues renumbered 
    21784 
    21785 > changechains #16/BD GU
    21786 
    21787 Chain IDs of 2 residues changed 
    21788 ['1', '59'] 
    21789 
    21790 > select #16/Em
    21791 
    21792 552 atoms, 567 bonds, 65 residues, 1 model selected 
    21793 126 
    21794 127 
    21795 >1 
    21796 > renumber #16/Em start 127
    21797 
    21798 65 residues renumbered 
    21799 
    21800 > changechains #16/Em GU
    21801 
    21802 Chain IDs of 65 residues changed 
    21803 ['1', '13'] 
    21804 
    21805 > select #16/FW
    21806 
    21807 101 atoms, 104 bonds, 13 residues, 1 model selected 
    21808 191 
    21809 191 
    21810 >0 
    21811 
    21812 > delete #16/FW:1
    21813 
    21814 > renumber #16/FW start 192
    21815 
    21816 12 residues renumbered 
    21817 
    21818 > changechains #16/FW GU
    21819 
    21820 Chain IDs of 12 residues changed 
    21821 Renumering chain GET91263.1_A 
    21822 ['1', '34'] 
    21823 
    21824 > select #16/FL
    21825 
    21826 257 atoms, 261 bonds, 34 residues, 1 model selected 
    21827 0 
    21828 4 
    21829 >4 
    21830 > renumber #16/FL start 4
    21831 
    21832 34 residues renumbered 
    21833 ['1', '5'] 
    21834 
    21835 > select #16/FP
    21836 
    21837 31 atoms, 31 bonds, 5 residues, 1 model selected 
    21838 37 
    21839 39 
    21840 >2 
    21841 > renumber #16/FP start 39
    21842 
    21843 5 residues renumbered 
    21844 
    21845 > changechains #16/FP FL
    21846 
    21847 Chain IDs of 5 residues changed 
    21848 ['3', '25'] 
    21849 
    21850 > select #16/1
    21851 
    21852 220 atoms, 226 bonds, 26 residues, 1 model selected 
    21853 43 
    21854 45 
    21855 >2 
    21856 > renumber #16/1 start 45
    21857 
    21858 26 residues renumbered 
    21859 
    21860 > changechains #16/1 FL
    21861 
    21862 Chain IDs of 26 residues changed 
    21863 Renumering chain LtaP35.0250.mRNA_A 
    21864 ['1', '4'] 
    21865 
    21866 > select #16/GA
    21867 
    21868 26 atoms, 27 bonds, 4 residues, 1 model selected 
    21869 0 
    21870 13 
    21871 >13 
    21872 > renumber #16/GA start 13
    21873 
    21874 4 residues renumbered 
    21875 ['1', '3'] 
    21876 
    21877 > select #16/a
    21878 
    21879 19 atoms, 18 bonds, 3 residues, 1 model selected 
    21880 16 
    21881 17 
    21882 >1 
    21883 > renumber #16/a start 17
    21884 
    21885 3 residues renumbered 
    21886 
    21887 > changechains #16/a GA
    21888 
    21889 Chain IDs of 3 residues changed 
    21890 ['6', '20'] 
    21891 
    21892 > select #16/EQ
    21893 
    21894 192 atoms, 194 bonds, 24 residues, 1 model selected 
    21895 19 
    21896 20 
    21897 >1 
    21898 > renumber #16/EQ start 20
    21899 
    21900 24 residues renumbered 
    21901 
    21902 > changechains #16/EQ GA
    21903 
    21904 Chain IDs of 24 residues changed 
    21905 ['1', '11'] 
    21906 
    21907 > select #16/En
    21908 
    21909 90 atoms, 92 bonds, 11 residues, 1 model selected 
    21910 43 
    21911 45 
    21912 >2 
    21913 > renumber #16/En start 45
    21914 
    21915 11 residues renumbered 
    21916 
    21917 > changechains #16/En GA
    21918 
    21919 Chain IDs of 11 residues changed 
    21920 ['3', '39'] 
    21921 
    21922 > select #16/m
    21923 
    21924 342 atoms, 353 bonds, 39 residues, 1 model selected 
    21925 55 
    21926 57 
    21927 >2 
    21928 > renumber #16/m start 57
    21929 
    21930 39 residues renumbered 
    21931 
    21932 > changechains #16/m GA
    21933 
    21934 Chain IDs of 39 residues changed 
    21935 ['1', '27'] 
    21936 
    21937 > select #16/Eo
    21938 
    21939 229 atoms, 235 bonds, 27 residues, 1 model selected 
    21940 95 
    21941 96 
    21942 >1 
    21943 > renumber #16/Eo start 96
    21944 
    21945 27 residues renumbered 
    21946 
    21947 > changechains #16/Eo GA
    21948 
    21949 Chain IDs of 27 residues changed 
    21950 Renumering chain GET89654.1_A 
    21951 ['1', '21'] 
    21952 
    21953 > select #16/GQ
    21954 
    21955 149 atoms, 153 bonds, 21 residues, 1 model selected 
    21956 0 
    21957 13 
    21958 >13 
    21959 > renumber #16/GQ start 13
    21960 
    21961 21 residues renumbered 
    21962 ['1', '1'] 
    21963 
    21964 > select #16/B2
    21965 
    21966 11 atoms, 11 bonds, 1 residue, 1 model selected 
    21967 33 
    21968 34 
    21969 >1 
    21970 > renumber #16/B2 start 34
    21971 
    21972 1 residues renumbered 
    21973 
    21974 > changechains #16/B2 GQ
    21975 
    21976 Chain IDs of 1 residues changed 
    21977 ['1', '4'] 
    21978 
    21979 > select #16/AB
    21980 
    21981 32 atoms, 32 bonds, 4 residues, 1 model selected 
    21982 34 
    21983 35 
    21984 >1 
    21985 > renumber #16/AB start 35
    21986 
    21987 4 residues renumbered 
    21988 
    21989 > changechains #16/AB GQ
    21990 
    21991 Chain IDs of 4 residues changed 
    21992 ['2', '33'] 
    21993 
    21994 > select #16/FM
    21995 
    21996 254 atoms, 256 bonds, 33 residues, 1 model selected 
    21997 38 
    21998 39 
    21999 >1 
    22000 > renumber #16/FM start 39
    22001 
    22002 33 residues renumbered 
    22003 
    22004 > changechains #16/FM GQ
    22005 
    22006 Chain IDs of 33 residues changed 
    22007 ['1', '1'] 
    22008 
    22009 > select #16/CP
    22010 
    22011 8 atoms, 7 bonds, 1 residue, 1 model selected 
    22012 71 
    22013 72 
    22014 >1 
    22015 > renumber #16/CP start 72
    22016 
    22017 1 residues renumbered 
    22018 
    22019 > changechains #16/CP GQ
    22020 
    22021 Chain IDs of 1 residues changed 
    22022 ['1', '1'] 
    22023 
    22024 > select #16/BG
    22025 
    22026 4 atoms, 3 bonds, 1 residue, 1 model selected 
    22027 72 
    22028 73 
    22029 >1 
    22030 > renumber #16/BG start 73
    22031 
    22032 1 residues renumbered 
    22033 
    22034 > changechains #16/BG GQ
    22035 
    22036 Chain IDs of 1 residues changed 
    22037 ['1', '2'] 
    22038 
    22039 > select #16/A8
    22040 
    22041 15 atoms, 15 bonds, 2 residues, 1 model selected 
    22042 73 
    22043 74 
    22044 >1 
    22045 > renumber #16/A8 start 74
    22046 
    22047 2 residues renumbered 
    22048 
    22049 > changechains #16/A8 GQ
    22050 
    22051 Chain IDs of 2 residues changed 
    22052 ['1', '1'] 
    22053 
    22054 > select #16/B0
    22055 
    22056 4 atoms, 3 bonds, 1 residue, 1 model selected 
    22057 75 
    22058 76 
    22059 >1 
    22060 > renumber #16/B0 start 76
    22061 
    22062 1 residues renumbered 
    22063 
    22064 > changechains #16/B0 GQ
    22065 
    22066 Chain IDs of 1 residues changed 
    22067 ['1', '1'] 
    22068 
    22069 > select #16/C1
    22070 
    22071 5 atoms, 4 bonds, 1 residue, 1 model selected 
    22072 76 
    22073 77 
    22074 >1 
    22075 > renumber #16/C1 start 77
    22076 
    22077 1 residues renumbered 
    22078 
    22079 > changechains #16/C1 GQ
    22080 
    22081 Chain IDs of 1 residues changed 
    22082 ['1', '8'] 
    22083 
    22084 > select #16/GN
    22085 
    22086 58 atoms, 58 bonds, 8 residues, 1 model selected 
    22087 77 
    22088 78 
    22089 >1 
    22090 > renumber #16/GN start 78
    22091 
    22092 8 residues renumbered 
    22093 
    22094 > changechains #16/GN GQ
    22095 
    22096 Chain IDs of 8 residues changed 
    22097 
    22098 > view #7:468
    22099 
    22100 > hide #!15 models
    22101 
    22102 > renumber #1/FN start 440
    22103 
    22104 69 residues renumbered 
    22105 
    22106 > renumber #16/FN start 440
    22107 
    22108 68 residues renumbered 
    22109 
    22110 > renumber #16/FN start 434
    22111 
    22112 68 residues renumbered 
    22113 
    22114 > renumber #16/FN start 435
    22115 
    22116 68 residues renumbered 
    22117 
    22118 > changechains #16/FN 4
    22119 
    22120 Proposed chainID change conflicts with existing residue
    22121 renamedAndRenumberedModel #16/4 TYR 511 
    22122 
    22123 > seelct #16
    22124 
    22125 Unknown command: seelct #16 
    22126 
    22127 > select #16
    22128 
    22129 39770 atoms, 40393 bonds, 3 pseudobonds, 5076 residues, 2 models selected 
    22130 
    22131 > show sel atoms
    22132 
    22133 > style sel stick
    22134 
    22135 Changed 39770 atom styles 
    22136 
    22137 > renumber #16/FN start 435
    22138 
    22139 0 residues renumbered 
    22140 
    22141 > delete #16/FN 505;
    22142 
    22143 Expected a keyword 
    22144 
    22145 > delete #16/FN 508;
    22146 
    22147 Expected a keyword 
    22148 
    22149 > renumber #16/FN:479-512 start 479 relative false
    22150 
    22151 0 residues renumbered 
    22152 
    22153 > delete #16/FN:505
    22154 
    22155 > delete #16/FN:508
    22156 
    22157 > renumber #16/FN:479-512 start 479 relative false
    22158 
    22159 6 residues renumbered 
    22160 
    22161 > changechains #16/FN 4
    22162 
    22163 Chain IDs of 66 residues changed 
    22164 
    22165 > close session
    22166 
    22167 > open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    22168 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    22169 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
    22170 
    22171 Summary of feedback from opening
    22172 /Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    22173 rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    22174 Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif 
    22175 --- 
    22176 warnings | Missing entity information. Treating each chain as a separate entity. 
    22177 Missing or incomplete sequence information. Inferred polymer connectivity. 
    22178  
    22179  
    22180 Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #1 
    22181 --- 
    22182 Chain | Description 
    22183 0 | No description available 
    22184 1 | No description available 
    22185 2 | No description available 
    22186 3 | No description available 
    22187 4 | No description available 
    22188 5 | No description available 
    22189 6 | No description available 
    22190 7 | No description available 
    22191 8 | No description available 
    22192 9 | No description available 
    22193 A | No description available 
    22194 A3 | No description available 
    22195 A7 | No description available 
    22196 A8 | No description available 
    22197 AA | No description available 
    22198 AB | No description available 
    22199 AD | No description available 
    22200 AE | No description available 
    22201 AF | No description available 
    22202 AH Ck Du | No description available 
    22203 AK DC | No description available 
    22204 AL | No description available 
    22205 AN | No description available 
    22206 AP | No description available 
    22207 AQ BE CD DN Df Dl Dn Gj | No description available 
    22208 AU | No description available 
    22209 AY | No description available 
    22210 AZ | No description available 
    22211 Ab | No description available 
    22212 Ad | No description available 
    22213 Ae S | No description available 
    22214 Af | No description available 
    22215 Ah | No description available 
    22216 Aj | No description available 
    22217 Al | No description available 
    22218 Am | No description available 
    22219 Aq C5 Ct Cv DV | No description available 
    22220 As E | No description available 
    22221 Av | No description available 
    22222 Aw | No description available 
    22223 Ay B3 | No description available 
    22224 Az | No description available 
    22225 B | No description available 
    22226 B1 | No description available 
    22227 BB | No description available 
    22228 BD | No description available 
    22229 BK | No description available 
    22230 BL | No description available 
    22231 BO | No description available 
    22232 BS | No description available 
    22233 BU | No description available 
    22234 BW | No description available 
    22235 Bi | No description available 
    22236 Bk | No description available 
    22237 Br U | No description available 
    22238 Bu | No description available 
    22239 Bx | No description available 
    22240 Bz | No description available 
    22241 C | No description available 
    22242 C2 | No description available 
    22243 CC | No description available 
    22244 CE | No description available 
    22245 CG | No description available 
    22246 CT | No description available 
    22247 CW | No description available 
    22248 CY | No description available 
    22249 Cd | No description available 
    22250 Ch | No description available 
    22251 Cl | No description available 
    22252 D | No description available 
    22253 D9 | No description available 
    22254 DB | No description available 
    22255 DF | No description available 
    22256 DS | No description available 
    22257 DY | No description available 
    22258 E0 | No description available 
    22259 E1 | No description available 
    22260 E2 | No description available 
    22261 E3 | No description available 
    22262 E4 | No description available 
    22263 E5 | No description available 
    22264 E6 | No description available 
    22265 E7 | No description available 
    22266 E8 | No description available 
    22267 E9 | No description available 
    22268 EJ | No description available 
    22269 EK | No description available 
    22270 EL | No description available 
    22271 EM | No description available 
    22272 EN | No description available 
    22273 EO | No description available 
    22274 EP | No description available 
    22275 EQ | No description available 
    22276 ER | No description available 
    22277 ES | No description available 
    22278 ET | No description available 
    22279 EU | No description available 
    22280 EV | No description available 
    22281 EW | No description available 
    22282 EX | No description available 
    22283 EY | No description available 
    22284 EZ | No description available 
    22285 Ea | No description available 
    22286 Eb | No description available 
    22287 Ec | No description available 
    22288 Ed | No description available 
    22289 Ee | No description available 
    22290 Ef | No description available 
    22291 Eg | No description available 
    22292 Eh | No description available 
    22293 Ei | No description available 
    22294 Ej | No description available 
    22295 Ek | No description available 
    22296 El | No description available 
    22297 Em | No description available 
    22298 En | No description available 
    22299 Eo | No description available 
    22300 Ep | No description available 
    22301 Eq | No description available 
    22302 Er | No description available 
    22303 Es | No description available 
    22304 Et | No description available 
    22305 Eu | No description available 
    22306 Ev | No description available 
    22307 Ew | No description available 
    22308 Ex | No description available 
    22309 Ey | No description available 
    22310 Ez | No description available 
    22311 F | No description available 
    22312 F0 | No description available 
    22313 F1 | No description available 
    22314 F2 | No description available 
    22315 F3 | No description available 
    22316 F4 | No description available 
    22317 F5 | No description available 
    22318 F6 | No description available 
    22319 F7 | No description available 
    22320 F8 | No description available 
    22321 F9 | No description available 
    22322 FA | No description available 
    22323 FB | No description available 
    22324 FC | No description available 
    22325 FD | No description available 
    22326 FE | No description available 
    22327 FF | No description available 
    22328 FG | No description available 
    22329 FH | No description available 
    22330 FI | No description available 
    22331 FJ | No description available 
    22332 FK | No description available 
    22333 FL | No description available 
    22334 FM | No description available 
    22335 FN | No description available 
    22336 FO | No description available 
    22337 FP | No description available 
    22338 FQ | No description available 
    22339 FR | No description available 
    22340 FS | No description available 
    22341 FT | No description available 
    22342 FU | No description available 
    22343 FV | No description available 
    22344 FW | No description available 
    22345 FX | No description available 
    22346 FY | No description available 
    22347 FZ | No description available 
    22348 Fa | No description available 
    22349 Fb | No description available 
    22350 Fc | No description available 
    22351 Fd | No description available 
    22352 Fe | No description available 
    22353 Ff | No description available 
    22354 Fg | No description available 
    22355 Fh | No description available 
    22356 Fi | No description available 
    22357 Fj | No description available 
    22358 Fk | No description available 
    22359 Fl | No description available 
    22360 Fm | No description available 
    22361 Fn | No description available 
    22362 Fo | No description available 
    22363 Fp | No description available 
    22364 Fq | No description available 
    22365 Fr | No description available 
    22366 Fs | No description available 
    22367 Ft | No description available 
    22368 Fu | No description available 
    22369 Fv | No description available 
    22370 Fw | No description available 
    22371 Fx | No description available 
    22372 Fy | No description available 
    22373 Fz | No description available 
    22374 G | No description available 
    22375 GA | No description available 
    22376 GB | No description available 
    22377 GC | No description available 
    22378 GD | No description available 
    22379 GE | No description available 
    22380 GF | No description available 
    22381 GG | No description available 
    22382 GH | No description available 
    22383 GI | No description available 
    22384 GJ | No description available 
    22385 GK | No description available 
    22386 GL | No description available 
    22387 GM | No description available 
    22388 GN | No description available 
    22389 GO | No description available 
    22390 GP | No description available 
    22391 GQ | No description available 
    22392 GR | No description available 
    22393 GS | No description available 
    22394 GT | No description available 
    22395 GU | No description available 
    22396 GV | No description available 
    22397 GW | No description available 
    22398 GX | No description available 
    22399 GY | No description available 
    22400 GZ | No description available 
    22401 Ga | No description available 
    22402 Gb | No description available 
    22403 Gc | No description available 
    22404 Gd | No description available 
    22405 Ge | No description available 
    22406 Gf | No description available 
    22407 Gg | No description available 
    22408 H | No description available 
    22409 I | No description available 
    22410 J | No description available 
    22411 K | No description available 
    22412 L | No description available 
    22413 M | No description available 
    22414 N | No description available 
    22415 O | No description available 
    22416 P | No description available 
    22417 Q | No description available 
    22418 R | No description available 
    22419 T | No description available 
    22420 V | No description available 
    22421 W | No description available 
    22422 X | No description available 
    22423 Y | No description available 
    22424 Z | No description available 
    22425 a | No description available 
    22426 b | No description available 
    22427 c | No description available 
    22428 d | No description available 
    22429 e | No description available 
    22430 f | No description available 
    22431 g | No description available 
    22432 h | No description available 
    22433 i | No description available 
    22434 j | No description available 
    22435 k | No description available 
    22436 l | No description available 
    22437 m | No description available 
    22438 n | No description available 
    22439 o | No description available 
    22440 p | No description available 
    22441 q | No description available 
    22442 r | No description available 
    22443 s | No description available 
    22444 t | No description available 
    22445 u | No description available 
    22446 v | No description available 
    22447 w | No description available 
    22448 x | No description available 
    22449 y | No description available 
    22450 z | No description available 
    22451  
    22452 
    22453 > hide atoms
    22454 
    22455 > show cartoons
    22456 
    22457 > delete #2/FN:35
    22458 
    22459 > renumber #2/FN:36-69 start 45
    22460 
    22461 No residues specified 
    22462 
    22463 > renumber #2/FN start 45
    22464 
    22465 No residues specified 
    22466 
    22467 > delete #2/FN:505
    22468 
    22469 > delete #2/FN:508
    22470 
    22471 > renumber #2/FN:479-512 start 479 relative false
    22472 
    22473 No residues specified 
    22474 
    22475 > changechains #2/FN 4
    22476 
    22477 No residues specified 
    22478 
    22479 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    22480 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    22481 > #1 alignmentsMod1Mod.txt
    22482 
    22483 ['1', '8'] 
    22484 ['1', '8'] 
    22485 ['11'] 
    22486 ['1', '1'] 
    22487 ['11'] 
    22488 ['1', '1'] 
    22489 ['1', '3'] 
    22490 ['1', '3'] 
    22491 ['11'] 
    22492 ['1', '1'] 
    22493 ['1', '4'] 
    22494 ['1', '4'] 
    22495 ['1', '15'] 
    22496 ['1', '15'] 
    22497 ['11'] 
    22498 ['1', '1'] 
    22499 ['1', '9'] 
    22500 ['1', '9'] 
    22501 ['1', '4'] 
    22502 ['1', '4'] 
    22503 ['1', '28'] 
    22504 ['1', '28'] 
    22505 ['1', '15'] 
    22506 ['1', '15'] 
    22507 ['7', '15'] 
    22508 ['7', '15'] 
    22509 ['2', '44'] 
    22510 ['2', '44'] 
    22511 ['1', '7'] 
    22512 ['1', '7'] 
    22513 ['1', '8'] 
    22514 ['1', '8'] 
    22515 ['1', '13'] 
    22516 ['1', '13'] 
    22517 ['11'] 
    22518 ['1', '1'] 
    22519 ['1', '31'] 
    22520 ['1', '31'] 
    22521 ['12'] 
    22522 ['1', '2'] 
    22523 ['6', '22'] 
    22524 ['6', '22'] 
    22525 ['5', '21'] 
    22526 ['5', '21'] 
    22527 ['3', '140'] 
    22528 ['3', '140'] 
    22529 ['1', '3'] 
    22530 ['1', '3'] 
    22531 ['1', '8'] 
    22532 ['1', '8'] 
    22533 ['2', '18'] 
    22534 ['2', '18'] 
    22535 ['1', '7'] 
    22536 ['1', '7'] 
    22537 ['7', '12'] 
    22538 ['7', '12'] 
    22539 ['1', '10'] 
    22540 ['1', '10'] 
    22541 ['12'] 
    22542 ['1', '2'] 
    22543 ['1', '10'] 
    22544 ['1', '10'] 
    22545 ['4', '63'] 
    22546 ['4', '63'] 
    22547 ['9', '11'] 
    22548 ['9', '11'] 
    22549 ['11'] 
    22550 ['1', '1'] 
    22551 ['1', '5'] 
    22552 ['1', '5'] 
    22553 ['5', '33'] 
    22554 ['5', '33'] 
    22555 ['1', '4'] 
    22556 ['1', '4'] 
    22557 ['1', '74'] 
    22558 ['1', '74'] 
    22559 ['3', '18'] 
    22560 ['3', '18'] 
    22561 ['2', '22'] 
    22562 ['2', '22'] 
    22563 ['1', '4'] 
    22564 ['1', '4'] 
    22565 ['1', '3'] 
    22566 ['1', '3'] 
    22567 ['2', '81'] 
    22568 ['2', '81'] 
    22569 ['1', '8'] 
    22570 ['1', '8'] 
    22571 ['1', '5'] 
    22572 ['1', '5'] 
    22573 ['14', '47'] 
    22574 ['14', '47'] 
    22575 ['1', '5'] 
    22576 ['1', '5'] 
    22577 ['1', '3'] 
    22578 ['1', '3'] 
    22579 ['11'] 
    22580 ['1', '1'] 
    22581 ['1', '7'] 
    22582 ['1', '7'] 
    22583 ['1', '14'] 
    22584 ['1', '14'] 
    22585 ['1', '5'] 
    22586 ['1', '5'] 
    22587 ['1', '4'] 
    22588 ['1', '4'] 
    22589 ['1', '7'] 
    22590 ['1', '7'] 
    22591 ['1', '14'] 
    22592 ['1', '14'] 
    22593 ['1', '25'] 
    22594 ['1', '25'] 
    22595 ['1', '20'] 
    22596 ['1', '20'] 
    22597 ['1', '8'] 
    22598 ['1', '8'] 
    22599 ['11'] 
    22600 ['1', '1'] 
    22601 ['12'] 
    22602 ['1', '2'] 
    22603 ['12'] 
    22604 ['1', '2'] 
    22605 ['1', '18'] 
    22606 ['1', '18'] 
    22607 ['1', '70'] 
    22608 ['1', '70'] 
    22609 ['12'] 
    22610 ['1', '2'] 
    22611 ['12'] 
    22612 ['1', '2'] 
    22613 ['1', '12'] 
    22614 ['1', '12'] 
    22615 ['1', '5'] 
    22616 ['1', '5'] 
    22617 ['1', '14'] 
    22618 ['1', '14'] 
    22619 ['1', '3'] 
    22620 ['1', '3'] 
    22621 ['12'] 
    22622 ['1', '2'] 
    22623 ['1', '3'] 
    22624 ['1', '3'] 
    22625 ['1', '7'] 
    22626 ['1', '7'] 
    22627 ['1', '32'] 
    22628 ['1', '32'] 
    22629 ['11'] 
    22630 ['1', '1'] 
    22631 ['12'] 
    22632 ['1', '2'] 
    22633 ['9', '18'] 
    22634 ['9', '18'] 
    22635 ['11'] 
    22636 ['1', '1'] 
    22637 ['1', '4'] 
    22638 ['1', '4'] 
    22639 ['12'] 
    22640 ['1', '2'] 
    22641 ['1', '10'] 
    22642 ['1', '10'] 
    22643 ['1', '5'] 
    22644 ['1', '5'] 
    22645 ['12'] 
    22646 ['1', '2'] 
    22647 ['1', '20'] 
    22648 ['1', '20'] 
    22649 ['1', '7'] 
    22650 ['1', '7'] 
    22651 ['11'] 
    22652 ['1', '1'] 
    22653 ['12'] 
    22654 ['1', '2'] 
    22655 ['11'] 
    22656 ['1', '1'] 
    22657 ['11'] 
    22658 ['1', '1'] 
    22659 ['12'] 
    22660 ['1', '2'] 
    22661 ['1', '3'] 
    22662 ['1', '3'] 
    22663 ['1', '12'] 
    22664 ['1', '12'] 
    22665 ['1', '3'] 
    22666 ['1', '3'] 
    22667 ['2', '15'] 
    22668 ['2', '15'] 
    22669 ['11'] 
    22670 ['1', '1'] 
    22671 ['11'] 
    22672 ['1', '1'] 
    22673 ['1', '153'] 
    22674 ['1', '153'] 
    22675 ['11'] 
    22676 ['1', '1'] 
    22677 ['1', '39'] 
    22678 ['1', '39'] 
    22679 ['1', '27'] 
    22680 ['1', '27'] 
    22681 ['1', '37'] 
    22682 ['1', '37'] 
    22683 ['12'] 
    22684 ['1', '2'] 
    22685 ['11'] 
    22686 ['1', '1'] 
    22687 ['11'] 
    22688 ['1', '1'] 
    22689 ['1', '56'] 
    22690 ['1', '56'] 
    22691 ['1', '9'] 
    22692 ['1', '9'] 
    22693 ['1', '4'] 
    22694 ['1', '4'] 
    22695 ['12'] 
    22696 ['1', '2'] 
    22697 ['1', '3'] 
    22698 ['1', '3'] 
    22699 ['12'] 
    22700 ['1', '2'] 
    22701 ['1', '10'] 
    22702 ['1', '10'] 
    22703 ['1', '4'] 
    22704 ['1', '4'] 
    22705 ['11'] 
    22706 ['1', '1'] 
    22707 ['12'] 
    22708 ['1', '2'] 
    22709 ['1', '30'] 
    22710 ['1', '30'] 
    22711 ['3', '45'] 
    22712 ['3', '45'] 
    22713 ['1', '9'] 
    22714 ['1', '9'] 
    22715 ['12'] 
    22716 ['1', '2'] 
    22717 ['1', '59'] 
    22718 ['1', '59'] 
    22719 ['1', '13'] 
    22720 ['1', '13'] 
    22721 ['1', '34'] 
    22722 ['1', '34'] 
    22723 ['1', '5'] 
    22724 ['1', '5'] 
    22725 ['3', '25'] 
    22726 ['3', '25'] 
    22727 ['1', '4'] 
    22728 ['1', '4'] 
    22729 ['1', '3'] 
    22730 ['1', '3'] 
    22731 ['6', '20'] 
    22732 ['6', '20'] 
    22733 ['1', '11'] 
    22734 ['1', '11'] 
    22735 ['3', '39'] 
    22736 ['3', '39'] 
    22737 ['1', '27'] 
    22738 ['1', '27'] 
    22739 ['1', '21'] 
    22740 ['1', '21'] 
    22741 ['11'] 
    22742 ['1', '1'] 
    22743 ['1', '4'] 
    22744 ['1', '4'] 
    22745 ['2', '33'] 
    22746 ['2', '33'] 
    22747 ['11'] 
    22748 ['1', '1'] 
    22749 ['11'] 
    22750 ['1', '1'] 
    22751 ['12'] 
    22752 ['1', '2'] 
    22753 ['11'] 
    22754 ['1', '1'] 
    22755 ['11'] 
    22756 ['1', '1'] 
    22757 ['1', '8'] 
    22758 ['1', '8'] 
    22759 LtaP35.1590.mRNA_A 
    22760 LtaP35.1450.mRNA_A 
    22761 LtaP07.0060.mRNA_A 
    22762 LtaP32.3800.mRNA_A 
    22763 LtaP13.0770.mRNA_A 
    22764 sp|P14548.2|CYB_LEITA_A 
    22765 LtaP35.0210.mRNA_A 
    22766 GET91263.1_A 
    22767 LtaP35.0250.mRNA_A 
    22768 GET89654.1_A 
    22769 
    22770 > combine #1 close false name renamedAndRenumberedModel
    22771 
    22772 Renumering chain LtaP35.1590.mRNA_A 
    22773 ['1', '8'] 
    22774 
    22775 > select #2/GC
    22776 
    22777 66 atoms, 66 bonds, 8 residues, 1 model selected 
    22778 0 
    22779 17 
    22780 >17 
    22781 > renumber #2/GC start 17
    22782 
    22783 8 residues renumbered 
    22784 ['1', '1'] 
    22785 
    22786 > select #2/Bd
    22787 
    22788 4 atoms, 3 bonds, 1 residue, 1 model selected 
    22789 24 
    22790 25 
    22791 >1 
    22792 > renumber #2/Bd start 25
    22793 
    22794 1 residues renumbered 
    22795 
    22796 > changechains #2/Bd GC
    22797 
    22798 Chain IDs of 1 residues changed 
    22799 ['1', '1'] 
    22800 
    22801 > select #2/Ca
    22802 
    22803 4 atoms, 3 bonds, 1 residue, 1 model selected 
    22804 25 
    22805 26 
    22806 >1 
    22807 > renumber #2/Ca start 26
    22808 
    22809 1 residues renumbered 
    22810 
    22811 > changechains #2/Ca GC
    22812 
    22813 Chain IDs of 1 residues changed 
    22814 ['1', '3'] 
    22815 
    22816 > select #2/AP
    22817 
    22818 19 atoms, 19 bonds, 3 residues, 1 model selected 
    22819 26 
    22820 27 
    22821 >1 
    22822 > renumber #2/AP start 27
    22823 
    22824 3 residues renumbered 
    22825 
    22826 > changechains #2/AP GC
    22827 
    22828 Chain IDs of 3 residues changed 
    22829 ['1', '1'] 
    22830 
    22831 > select #2/BN
    22832 
    22833 6 atoms, 5 bonds, 1 residue, 1 model selected 
    22834 29 
    22835 30 
    22836 >1 
    22837 > renumber #2/BN start 30
    22838 
    22839 1 residues renumbered 
    22840 
    22841 > changechains #2/BN GC
    22842 
    22843 Chain IDs of 1 residues changed 
    22844 ['1', '4'] 
    22845 
    22846 > select #2/FF
    22847 
    22848 32 atoms, 32 bonds, 4 residues, 1 model selected 
    22849 30 
    22850 31 
    22851 >1 
    22852 > renumber #2/FF start 31
    22853 
    22854 4 residues renumbered 
    22855 
    22856 > changechains #2/FF GC
    22857 
    22858 Chain IDs of 4 residues changed 
    22859 ['1', '15'] 
    22860 
    22861 > select #2/Fo
    22862 
    22863 103 atoms, 106 bonds, 15 residues, 1 model selected 
    22864 34 
    22865 35 
    22866 >1 
    22867 > renumber #2/Fo start 35
    22868 
    22869 15 residues renumbered 
    22870 
    22871 > changechains #2/Fo GC
    22872 
    22873 Chain IDs of 15 residues changed 
    22874 ['1', '1'] 
    22875 
    22876 > select #2/Cy
    22877 
    22878 8 atoms, 7 bonds, 1 residue, 1 model selected 
    22879 49 
    22880 50 
    22881 >1 
    22882 > renumber #2/Cy start 50
    22883 
    22884 1 residues renumbered 
    22885 
    22886 > changechains #2/Cy GC
    22887 
    22888 Chain IDs of 1 residues changed 
    22889 ['1', '9'] 
    22890 
    22891 > select #2/EY
    22892 
    22893 66 atoms, 67 bonds, 9 residues, 1 model selected 
    22894 50 
    22895 51 
    22896 >1 
    22897 > renumber #2/EY start 51
    22898 
    22899 9 residues renumbered 
    22900 
    22901 > changechains #2/EY GC
    22902 
    22903 Chain IDs of 9 residues changed 
    22904 ['1', '4'] 
    22905 
    22906 > select #2/FV
    22907 
    22908 24 atoms, 23 bonds, 4 residues, 1 model selected 
    22909 59 
    22910 60 
    22911 >1 
    22912 > renumber #2/FV start 60
    22913 
    22914 4 residues renumbered 
    22915 
    22916 > changechains #2/FV GC
    22917 
    22918 Chain IDs of 4 residues changed 
    22919 ['1', '28'] 
    22920 
    22921 > select #2/Ey
    22922 
    22923 210 atoms, 213 bonds, 28 residues, 1 model selected 
    22924 63 
    22925 64 
    22926 >1 
    22927 > renumber #2/Ey start 64
    22928 
    22929 28 residues renumbered 
    22930 
    22931 > changechains #2/Ey GC
    22932 
    22933 Chain IDs of 28 residues changed 
    22934 ['1', '15'] 
    22935 
    22936 > select #2/K
    22937 
    22938 102 atoms, 102 bonds, 15 residues, 1 model selected 
    22939 91 
    22940 92 
    22941 >1 
    22942 > renumber #2/K start 92
    22943 
    22944 15 residues renumbered 
    22945 
    22946 > changechains #2/K GC
    22947 
    22948 Chain IDs of 15 residues changed 
    22949 ['7', '15'] 
    22950 
    22951 > select #2/L
    22952 
    22953 184 atoms, 187 bonds, 22 residues, 1 model selected 
    22954 106 
    22955 107 
    22956 >1 
    22957 > renumber #2/L start 107
    22958 
    22959 22 residues renumbered 
    22960 
    22961 > changechains #2/L GC
    22962 
    22963 Chain IDs of 22 residues changed 
    22964 ['2', '44'] 
    22965 
    22966 > select #2/Ee
    22967 
    22968 355 atoms, 363 bonds, 44 residues, 1 model selected 
    22969 128 
    22970 129 
    22971 >1 
    22972 > renumber #2/Ee start 129
    22973 
    22974 44 residues renumbered 
    22975 
    22976 > changechains #2/Ee GC
    22977 
    22978 Chain IDs of 44 residues changed 
    22979 Renumering chain LtaP35.1450.mRNA_A 
    22980 ['1', '7'] 
    22981 
    22982 > select #2/Gc
    22983 
    22984 52 atoms, 52 bonds, 7 residues, 1 model selected 
    22985 0 
    22986 2 
    22987 >2 
    22988 > renumber #2/Gc start 2
    22989 
    22990 7 residues renumbered 
    22991 ['1', '8'] 
    22992 
    22993 > select #2/Ex
    22994 
    22995 55 atoms, 56 bonds, 8 residues, 1 model selected 
    22996 8 
    22997 10 
    22998 >2 
    22999 > renumber #2/Ex start 10
    23000 
    23001 8 residues renumbered 
    23002 
    23003 > changechains #2/Ex Gc
    23004 
    23005 Chain IDs of 8 residues changed 
    23006 ['1', '13'] 
    23007 
    23008 > select #2/E6
    23009 
    23010 98 atoms, 100 bonds, 13 residues, 1 model selected 
    23011 17 
    23012 18 
    23013 >1 
    23014 > renumber #2/E6 start 18
    23015 
    23016 13 residues renumbered 
    23017 
    23018 > changechains #2/E6 Gc
    23019 
    23020 Chain IDs of 13 residues changed 
    23021 ['1', '1'] 
    23022 
    23023 > select #2/Ai
    23024 
    23025 11 atoms, 10 bonds, 1 residue, 1 model selected 
    23026 30 
    23027 31 
    23028 >1 
    23029 > renumber #2/Ai start 31
    23030 
    23031 1 residues renumbered 
    23032 
    23033 > changechains #2/Ai Gc
    23034 
    23035 Chain IDs of 1 residues changed 
    23036 ['1', '31'] 
    23037 
    23038 > select #2/0
    23039 
    23040 233 atoms, 235 bonds, 31 residues, 1 model selected 
    23041 31 
    23042 32 
    23043 >1 
    23044 > renumber #2/0 start 32
    23045 
    23046 31 residues renumbered 
    23047 
    23048 > changechains #2/0 Gc
    23049 
    23050 Chain IDs of 31 residues changed 
    23051 ['1', '2'] 
    23052 
    23053 > select #2/U
    23054 
    23055 11 atoms, 10 bonds, 2 residues, 1 model selected 
    23056 62 
    23057 63 
    23058 >1 
    23059 > renumber #2/U start 63
    23060 
    23061 2 residues renumbered 
    23062 
    23063 > changechains #2/U Gc
    23064 
    23065 Chain IDs of 2 residues changed 
    23066 ['6', '22'] 
    23067 
    23068 > select #2/d
    23069 
    23070 176 atoms, 182 bonds, 22 residues, 1 model selected 
    23071 64 
    23072 65 
    23073 >1 
    23074 > renumber #2/d start 65
    23075 
    23076 22 residues renumbered 
    23077 
    23078 > changechains #2/d Gc
    23079 
    23080 Chain IDs of 22 residues changed 
    23081 ['5', '21'] 
    23082 
    23083 > select #2/EV
    23084 
    23085 161 atoms, 160 bonds, 21 residues, 1 model selected 
    23086 86 
    23087 87 
    23088 >1 
    23089 > renumber #2/EV start 87
    23090 
    23091 21 residues renumbered 
    23092 
    23093 > changechains #2/EV Gc
    23094 
    23095 Chain IDs of 21 residues changed 
    23096 
    23097 > delete #2/Ew:132
    23098 
    23099 > renumber #2/Ew:133-9999999 start 132
    23100 
    23101 11 residues renumbered 
    23102 ['3', '139'] 
    23103 
    23104 > select #2/Ew
    23105 
    23106 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    23107 107 
    23108 108 
    23109 >1 
    23110 > renumber #2/Ew start 108
    23111 
    23112 142 residues renumbered 
    23113 
    23114 > changechains #2/Ew Gc
    23115 
    23116 Chain IDs of 142 residues changed 
    23117 ['1', '3'] 
    23118 
    23119 > select #2/GO
    23120 
    23121 18 atoms, 18 bonds, 3 residues, 1 model selected 
    23122 249 
    23123 250 
    23124 >1 
    23125 > renumber #2/GO start 250
    23126 
    23127 3 residues renumbered 
    23128 
    23129 > changechains #2/GO Gc
    23130 
    23131 Chain IDs of 3 residues changed 
    23132 ['1', '8'] 
    23133 
    23134 > select #2/Z
    23135 
    23136 69 atoms, 71 bonds, 8 residues, 1 model selected 
    23137 252 
    23138 253 
    23139 >1 
    23140 > renumber #2/Z start 253
    23141 
    23142 8 residues renumbered 
    23143 
    23144 > changechains #2/Z Gc
    23145 
    23146 Chain IDs of 8 residues changed 
    23147 ['2', '18'] 
    23148 
    23149 > select #2/ES
    23150 
    23151 163 atoms, 164 bonds, 18 residues, 1 model selected 
    23152 260 
    23153 262 
    23154 >2 
    23155 > renumber #2/ES start 262
    23156 
    23157 18 residues renumbered 
    23158 
    23159 > changechains #2/ES Gc
    23160 
    23161 Chain IDs of 18 residues changed 
    23162 ['1', '7'] 
    23163 
    23164 > select #2/Fc
    23165 
    23166 40 atoms, 41 bonds, 7 residues, 1 model selected 
    23167 279 
    23168 282 
    23169 >3 
    23170 > renumber #2/Fc start 282
    23171 
    23172 7 residues renumbered 
    23173 
    23174 > changechains #2/Fc Gc
    23175 
    23176 Chain IDs of 7 residues changed 
    23177 ['7', '12'] 
    23178 
    23179 > select #2/Fa
    23180 
    23181 177 atoms, 179 bonds, 24 residues, 1 model selected 
    23182 288 
    23183 289 
    23184 >1 
    23185 > renumber #2/Fa start 289
    23186 
    23187 24 residues renumbered 
    23188 
    23189 > changechains #2/Fa Gc
    23190 
    23191 Chain IDs of 24 residues changed 
    23192 ['1', '10'] 
    23193 
    23194 > select #2/2
    23195 
    23196 81 atoms, 83 bonds, 10 residues, 1 model selected 
    23197 312 
    23198 314 
    23199 >2 
    23200 > renumber #2/2 start 314
    23201 
    23202 10 residues renumbered 
    23203 
    23204 > changechains #2/2 Gc
    23205 
    23206 Chain IDs of 10 residues changed 
    23207 ['1', '2'] 
    23208 
    23209 > select #2/E
    23210 
    23211 16 atoms, 16 bonds, 2 residues, 1 model selected 
    23212 323 
    23213 326 
    23214 >3 
    23215 > renumber #2/E start 326
    23216 
    23217 2 residues renumbered 
    23218 
    23219 > changechains #2/E Gc
    23220 
    23221 Chain IDs of 2 residues changed 
    23222 ['1', '10'] 
    23223 
    23224 > select #2/Ff
    23225 
    23226 75 atoms, 76 bonds, 10 residues, 1 model selected 
    23227 327 
    23228 328 
    23229 >1 
    23230 > renumber #2/Ff start 328
    23231 
    23232 10 residues renumbered 
    23233 
    23234 > changechains #2/Ff Gc
    23235 
    23236 Chain IDs of 10 residues changed 
    23237 ['4', '63'] 
    23238 
    23239 > select #2/E2
    23240 
    23241 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    23242 337 
    23243 338 
    23244 >1 
    23245 > renumber #2/E2 start 338
    23246 
    23247 132 residues renumbered 
    23248 
    23249 > changechains #2/E2 Gc
    23250 
    23251 Chain IDs of 132 residues changed 
    23252 ['9', '11'] 
    23253 
    23254 > select #2/W
    23255 
    23256 182 atoms, 189 bonds, 20 residues, 1 model selected 
    23257 469 
    23258 470 
    23259 >1 
    23260 > renumber #2/W start 470
    23261 
    23262 20 residues renumbered 
    23263 
    23264 > changechains #2/W Gc
    23265 
    23266 Chain IDs of 20 residues changed 
    23267 ['1', '1'] 
    23268 
    23269 > select #2/BM
    23270 
    23271 7 atoms, 6 bonds, 1 residue, 1 model selected 
    23272 489 
    23273 490 
    23274 >1 
    23275 > renumber #2/BM start 490
    23276 
    23277 1 residues renumbered 
    23278 
    23279 > changechains #2/BM Gc
    23280 
    23281 Chain IDs of 1 residues changed 
    23282 Renumering chain LtaP07.0060.mRNA_A 
    23283 ['1', '5'] 
    23284 
    23285 > select #2/A
    23286 
    23287 32 atoms, 33 bonds, 5 residues, 1 model selected 
    23288 0 
    23289 5 
    23290 >5 
    23291 > renumber #2/A start 5
    23292 
    23293 5 residues renumbered 
    23294 ['5', '33'] 
    23295 
    23296 > select #2/Fd
    23297 
    23298 314 atoms, 324 bonds, 36 residues, 1 model selected 
    23299 9 
    23300 10 
    23301 >1 
    23302 > renumber #2/Fd start 10
    23303 
    23304 36 residues renumbered 
    23305 
    23306 > changechains #2/Fd A
    23307 
    23308 Chain IDs of 36 residues changed 
    23309 ['1', '4'] 
    23310 
    23311 > select #2/Ef
    23312 
    23313 24 atoms, 23 bonds, 4 residues, 1 model selected 
    23314 45 
    23315 46 
    23316 >1 
    23317 > renumber #2/Ef start 46
    23318 
    23319 4 residues renumbered 
    23320 
    23321 > changechains #2/Ef A
    23322 
    23323 Chain IDs of 4 residues changed 
    23324 ['1', '74'] 
    23325 
    23326 > select #2/Eg
    23327 
    23328 577 atoms, 589 bonds, 74 residues, 1 model selected 
    23329 49 
    23330 50 
    23331 >1 
    23332 > renumber #2/Eg start 50
    23333 
    23334 74 residues renumbered 
    23335 
    23336 > changechains #2/Eg A
    23337 
    23338 Chain IDs of 74 residues changed 
    23339 ['3', '18'] 
    23340 
    23341 > select #2/j
    23342 
    23343 160 atoms, 162 bonds, 22 residues, 1 model selected 
    23344 123 
    23345 124 
    23346 >1 
    23347 > renumber #2/j start 124
    23348 
    23349 22 residues renumbered 
    23350 
    23351 > changechains #2/j A
    23352 
    23353 Chain IDs of 22 residues changed 
    23354 
    23355 > renumber #2/Ei:7-9999999 start 8
    23356 
    23357 19 residues renumbered 
    23358 
    23359 > ~bond #2/Ei:6@C #2/Ei:8@N
    23360 
    23361 ['2', '21'] 
    23362 
    23363 > select #2/Ei
    23364 
    23365 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    23366 145 
    23367 145 
    23368 >0 
    23369 
    23370 > delete #2/Ei:1
    23371 
    23372 > renumber #2/Ei start 146
    23373 
    23374 24 residues renumbered 
    23375 
    23376 > changechains #2/Ei A
    23377 
    23378 Chain IDs of 24 residues changed 
    23379 ['1', '4'] 
    23380 
    23381 > select #2/Bi
    23382 
    23383 23 atoms, 22 bonds, 4 residues, 1 model selected 
    23384 170 
    23385 168 
    23386 >-2 
    23387 
    23388 > delete #2/Bi:3
    23389 
    23390 > delete #2/Bi:2
    23391 
    23392 > delete #2/Bi:1
    23393 
    23394 > renumber #2/Bi start 171
    23395 
    23396 1 residues renumbered 
    23397 
    23398 > changechains #2/Bi A
    23399 
    23400 Chain IDs of 1 residues changed 
    23401 ['1', '3'] 
    23402 
    23403 > select #2/GM
    23404 
    23405 21 atoms, 20 bonds, 3 residues, 1 model selected 
    23406 171 
    23407 171 
    23408 >0 
    23409 
    23410 > delete #2/GM:1
    23411 
    23412 > renumber #2/GM start 172
    23413 
    23414 2 residues renumbered 
    23415 
    23416 > changechains #2/GM A
    23417 
    23418 Chain IDs of 2 residues changed 
    23419 ['2', '81'] 
    23420 
    23421 > select #2/E8
    23422 
    23423 695 atoms, 717 bonds, 86 residues, 1 model selected 
    23424 173 
    23425 174 
    23426 >1 
    23427 > renumber #2/E8 start 174
    23428 
    23429 86 residues renumbered 
    23430 
    23431 > changechains #2/E8 A
    23432 
    23433 Chain IDs of 86 residues changed 
    23434 Renumering chain LtaP32.3800.mRNA_A 
    23435 ['1', '8'] 
    23436 
    23437 > select #2/N
    23438 
    23439 66 atoms, 69 bonds, 8 residues, 1 model selected 
    23440 0 
    23441 34 
    23442 >34 
    23443 > renumber #2/N start 34
    23444 
    23445 8 residues renumbered 
    23446 ['1', '5'] 
    23447 
    23448 > select #2/GZ
    23449 
    23450 35 atoms, 34 bonds, 5 residues, 1 model selected 
    23451 41 
    23452 42 
    23453 >1 
    23454 > renumber #2/GZ start 42
    23455 
    23456 5 residues renumbered 
    23457 
    23458 > changechains #2/GZ N
    23459 
    23460 Chain IDs of 5 residues changed 
    23461 ['14', '47'] 
    23462 
    23463 > select #2/FT
    23464 
    23465 810 atoms, 833 bonds, 101 residues, 1 model selected 
    23466 46 
    23467 47 
    23468 >1 
    23469 > renumber #2/FT start 47
    23470 
    23471 101 residues renumbered 
    23472 
    23473 > changechains #2/FT N
    23474 
    23475 Chain IDs of 101 residues changed 
    23476 Renumering chain LtaP13.0770.mRNA_A 
    23477 ['1', '5'] 
    23478 
    23479 > select #2/4
    23480 
    23481 50 atoms, 51 bonds, 5 residues, 1 model selected 
    23482 0 
    23483 25 
    23484 >25 
    23485 > renumber #2/4 start 25
    23486 
    23487 5 residues renumbered 
    23488 ['1', '3'] 
    23489 
    23490 > select #2/D
    23491 
    23492 20 atoms, 20 bonds, 3 residues, 1 model selected 
    23493 29 
    23494 30 
    23495 >1 
    23496 > renumber #2/D start 30
    23497 
    23498 3 residues renumbered 
    23499 
    23500 > changechains #2/D 4
    23501 
    23502 Chain IDs of 3 residues changed 
    23503 ['1', '1'] 
    23504 
    23505 > select #2/CN
    23506 
    23507 6 atoms, 5 bonds, 1 residue, 1 model selected 
    23508 32 
    23509 33 
    23510 >1 
    23511 > renumber #2/CN start 33
    23512 
    23513 1 residues renumbered 
    23514 
    23515 > changechains #2/CN 4
    23516 
    23517 Chain IDs of 1 residues changed 
    23518 ['1', '7'] 
    23519 
    23520 > select #2/FG
    23521 
    23522 48 atoms, 48 bonds, 7 residues, 1 model selected 
    23523 33 
    23524 34 
    23525 >1 
    23526 > renumber #2/FG start 34
    23527 
    23528 7 residues renumbered 
    23529 
    23530 > changechains #2/FG 4
    23531 
    23532 Chain IDs of 7 residues changed 
    23533 ['1', '14'] 
    23534 
    23535 > select #2/GH
    23536 
    23537 92 atoms, 92 bonds, 14 residues, 1 model selected 
    23538 40 
    23539 57 
    23540 >17 
    23541 > renumber #2/GH start 57
    23542 
    23543 14 residues renumbered 
    23544 
    23545 > changechains #2/GH 4
    23546 
    23547 Chain IDs of 14 residues changed 
    23548 ['1', '5'] 
    23549 
    23550 > select #2/GW
    23551 
    23552 46 atoms, 46 bonds, 5 residues, 1 model selected 
    23553 70 
    23554 71 
    23555 >1 
    23556 > renumber #2/GW start 71
    23557 
    23558 5 residues renumbered 
    23559 
    23560 > changechains #2/GW 4
    23561 
    23562 Chain IDs of 5 residues changed 
    23563 ['1', '4'] 
    23564 
    23565 > select #2/Fj
    23566 
    23567 24 atoms, 23 bonds, 4 residues, 1 model selected 
    23568 75 
    23569 76 
    23570 >1 
    23571 > renumber #2/Fj start 76
    23572 
    23573 4 residues renumbered 
    23574 
    23575 > changechains #2/Fj 4
    23576 
    23577 Chain IDs of 4 residues changed 
    23578 ['1', '7'] 
    23579 
    23580 > select #2/E4
    23581 
    23582 48 atoms, 48 bonds, 7 residues, 1 model selected 
    23583 79 
    23584 80 
    23585 >1 
    23586 > renumber #2/E4 start 80
    23587 
    23588 7 residues renumbered 
    23589 
    23590 > changechains #2/E4 4
    23591 
    23592 Chain IDs of 7 residues changed 
    23593 ['1', '14'] 
    23594 
    23595 > select #2/Er
    23596 
    23597 99 atoms, 102 bonds, 14 residues, 1 model selected 
    23598 86 
    23599 87 
    23600 >1 
    23601 > renumber #2/Er start 87
    23602 
    23603 14 residues renumbered 
    23604 
    23605 > changechains #2/Er 4
    23606 
    23607 Chain IDs of 14 residues changed 
    23608 ['1', '25'] 
    23609 
    23610 > select #2/ER
    23611 
    23612 208 atoms, 211 bonds, 25 residues, 1 model selected 
    23613 100 
    23614 101 
    23615 >1 
    23616 > renumber #2/ER start 101
    23617 
    23618 25 residues renumbered 
    23619 
    23620 > changechains #2/ER 4
    23621 
    23622 Chain IDs of 25 residues changed 
    23623 ['1', '20'] 
    23624 
    23625 > select #2/Fz
    23626 
    23627 146 atoms, 147 bonds, 20 residues, 1 model selected 
    23628 125 
    23629 124 
    23630 >-1 
    23631 
    23632 > delete #2/Fz:2
    23633 
    23634 > delete #2/Fz:1
    23635 
    23636 > renumber #2/Fz start 126
    23637 
    23638 18 residues renumbered 
    23639 
    23640 > changechains #2/Fz 4
    23641 
    23642 Chain IDs of 18 residues changed 
    23643 ['1', '8'] 
    23644 
    23645 > select #2/p
    23646 
    23647 62 atoms, 62 bonds, 8 residues, 1 model selected 
    23648 143 
    23649 144 
    23650 >1 
    23651 > renumber #2/p start 144
    23652 
    23653 8 residues renumbered 
    23654 
    23655 > changechains #2/p 4
    23656 
    23657 Chain IDs of 8 residues changed 
    23658 ['1', '1'] 
    23659 
    23660 > select #2/Dk
    23661 
    23662 8 atoms, 7 bonds, 1 residue, 1 model selected 
    23663 151 
    23664 152 
    23665 >1 
    23666 > renumber #2/Dk start 152
    23667 
    23668 1 residues renumbered 
    23669 
    23670 > changechains #2/Dk 4
    23671 
    23672 Chain IDs of 1 residues changed 
    23673 ['1', '2'] 
    23674 
    23675 > select #2/Bz
    23676 
    23677 16 atoms, 15 bonds, 2 residues, 1 model selected 
    23678 152 
    23679 153 
    23680 >1 
    23681 > renumber #2/Bz start 153
    23682 
    23683 2 residues renumbered 
    23684 
    23685 > changechains #2/Bz 4
    23686 
    23687 Chain IDs of 2 residues changed 
    23688 ['1', '2'] 
    23689 
    23690 > select #2/Br
    23691 
    23692 11 atoms, 10 bonds, 2 residues, 1 model selected 
    23693 154 
    23694 155 
    23695 >1 
    23696 > renumber #2/Br start 155
    23697 
    23698 2 residues renumbered 
    23699 
    23700 > changechains #2/Br 4
    23701 
    23702 Chain IDs of 2 residues changed 
    23703 ['1', '18'] 
    23704 
    23705 > select #2/F6
    23706 
    23707 144 atoms, 146 bonds, 18 residues, 1 model selected 
    23708 156 
    23709 181 
    23710 >25 
    23711 > renumber #2/F6 start 181
    23712 
    23713 18 residues renumbered 
    23714 
    23715 > changechains #2/F6 4
    23716 
    23717 Chain IDs of 18 residues changed 
    23718 ['1', '70'] 
    23719 
    23720 > select #2/q
    23721 
    23722 576 atoms, 590 bonds, 70 residues, 1 model selected 
    23723 198 
    23724 200 
    23725 >2 
    23726 > renumber #2/q start 200
    23727 
    23728 70 residues renumbered 
    23729 
    23730 > changechains #2/q 4
    23731 
    23732 Chain IDs of 70 residues changed 
    23733 ['1', '2'] 
    23734 
    23735 > select #2/Aw
    23736 
    23737 14 atoms, 13 bonds, 2 residues, 1 model selected 
    23738 269 
    23739 270 
    23740 >1 
    23741 > renumber #2/Aw start 270
    23742 
    23743 2 residues renumbered 
    23744 
    23745 > changechains #2/Aw 4
    23746 
    23747 Chain IDs of 2 residues changed 
    23748 ['1', '2'] 
    23749 
    23750 > select #2/X
    23751 
    23752 12 atoms, 11 bonds, 2 residues, 1 model selected 
    23753 271 
    23754 272 
    23755 >1 
    23756 > renumber #2/X start 272
    23757 
    23758 2 residues renumbered 
    23759 
    23760 > changechains #2/X 4
    23761 
    23762 Chain IDs of 2 residues changed 
    23763 ['1', '12'] 
    23764 
    23765 > select #2/Y
    23766 
    23767 92 atoms, 95 bonds, 12 residues, 1 model selected 
    23768 273 
    23769 274 
    23770 >1 
    23771 > renumber #2/Y start 274
    23772 
    23773 12 residues renumbered 
    23774 
    23775 > changechains #2/Y 4
    23776 
    23777 Chain IDs of 12 residues changed 
    23778 ['1', '5'] 
    23779 
    23780 > select #2/9
    23781 
    23782 41 atoms, 42 bonds, 5 residues, 1 model selected 
    23783 285 
    23784 286 
    23785 >1 
    23786 > renumber #2/9 start 286
    23787 
    23788 5 residues renumbered 
    23789 
    23790 > changechains #2/9 4
    23791 
    23792 Chain IDs of 5 residues changed 
    23793 ['1', '14'] 
    23794 
    23795 > select #2/c
    23796 
    23797 112 atoms, 116 bonds, 14 residues, 1 model selected 
    23798 290 
    23799 290 
    23800 >0 
    23801 
    23802 > delete #2/c:1
    23803 
    23804 > renumber #2/c start 291
    23805 
    23806 13 residues renumbered 
    23807 
    23808 > changechains #2/c 4
    23809 
    23810 Chain IDs of 13 residues changed 
    23811 ['1', '3'] 
    23812 
    23813 > select #2/Ge
    23814 
    23815 15 atoms, 14 bonds, 3 residues, 1 model selected 
    23816 303 
    23817 304 
    23818 >1 
    23819 > renumber #2/Ge start 304
    23820 
    23821 3 residues renumbered 
    23822 
    23823 > changechains #2/Ge 4
    23824 
    23825 Chain IDs of 3 residues changed 
    23826 ['1', '2'] 
    23827 
    23828 > select #2/Du
    23829 
    23830 13 atoms, 12 bonds, 2 residues, 1 model selected 
    23831 306 
    23832 309 
    23833 >3 
    23834 > renumber #2/Du start 309
    23835 
    23836 2 residues renumbered 
    23837 
    23838 > changechains #2/Du 4
    23839 
    23840 Chain IDs of 2 residues changed 
    23841 ['1', '3'] 
    23842 
    23843 > select #2/Ad
    23844 
    23845 18 atoms, 18 bonds, 3 residues, 1 model selected 
    23846 310 
    23847 311 
    23848 >1 
    23849 > renumber #2/Ad start 311
    23850 
    23851 3 residues renumbered 
    23852 
    23853 > changechains #2/Ad 4
    23854 
    23855 Chain IDs of 3 residues changed 
    23856 ['1', '7'] 
    23857 
    23858 > select #2/t
    23859 
    23860 50 atoms, 50 bonds, 7 residues, 1 model selected 
    23861 313 
    23862 314 
    23863 >1 
    23864 > renumber #2/t start 314
    23865 
    23866 7 residues renumbered 
    23867 
    23868 > changechains #2/t 4
    23869 
    23870 Chain IDs of 7 residues changed 
    23871 ['1', '32'] 
    23872 
    23873 > select #2/FU
    23874 
    23875 251 atoms, 254 bonds, 32 residues, 1 model selected 
    23876 320 
    23877 321 
    23878 >1 
    23879 > renumber #2/FU start 321
    23880 
    23881 32 residues renumbered 
    23882 
    23883 > changechains #2/FU 4
    23884 
    23885 Chain IDs of 32 residues changed 
    23886 ['1', '1'] 
    23887 
    23888 > select #2/By
    23889 
    23890 11 atoms, 10 bonds, 1 residue, 1 model selected 
    23891 352 
    23892 353 
    23893 >1 
    23894 > renumber #2/By start 353
    23895 
    23896 1 residues renumbered 
    23897 
    23898 > changechains #2/By 4
    23899 
    23900 Chain IDs of 1 residues changed 
    23901 ['1', '2'] 
    23902 
    23903 > select #2/AH
    23904 
    23905 13 atoms, 12 bonds, 2 residues, 1 model selected 
    23906 353 
    23907 354 
    23908 >1 
    23909 > renumber #2/AH start 354
    23910 
    23911 2 residues renumbered 
    23912 
    23913 > changechains #2/AH 4
    23914 
    23915 Chain IDs of 2 residues changed 
    23916 ['9', '18'] 
    23917 
    23918 > select #2/GV
    23919 
    23920 182 atoms, 182 bonds, 24 residues, 1 model selected 
    23921 355 
    23922 356 
    23923 >1 
    23924 > renumber #2/GV start 356
    23925 
    23926 24 residues renumbered 
    23927 
    23928 > changechains #2/GV 4
    23929 
    23930 Chain IDs of 24 residues changed 
    23931 ['1', '1'] 
    23932 
    23933 > select #2/Dq
    23934 
    23935 4 atoms, 3 bonds, 1 residue, 1 model selected 
    23936 379 
    23937 380 
    23938 >1 
    23939 > renumber #2/Dq start 380
    23940 
    23941 1 residues renumbered 
    23942 
    23943 > changechains #2/Dq 4
    23944 
    23945 Chain IDs of 1 residues changed 
    23946 ['1', '4'] 
    23947 
    23948 > select #2/GT
    23949 
    23950 28 atoms, 27 bonds, 4 residues, 1 model selected 
    23951 380 
    23952 381 
    23953 >1 
    23954 > renumber #2/GT start 381
    23955 
    23956 4 residues renumbered 
    23957 
    23958 > changechains #2/GT 4
    23959 
    23960 Chain IDs of 4 residues changed 
    23961 ['1', '2'] 
    23962 
    23963 > select #2/DS
    23964 
    23965 15 atoms, 15 bonds, 2 residues, 1 model selected 
    23966 384 
    23967 387 
    23968 >3 
    23969 > renumber #2/DS start 387
    23970 
    23971 2 residues renumbered 
    23972 
    23973 > changechains #2/DS 4
    23974 
    23975 Chain IDs of 2 residues changed 
    23976 ['1', '10'] 
    23977 
    23978 > select #2/Fp
    23979 
    23980 76 atoms, 78 bonds, 10 residues, 1 model selected 
    23981 388 
    23982 389 
    23983 >1 
    23984 > renumber #2/Fp start 389
    23985 
    23986 10 residues renumbered 
    23987 
    23988 > changechains #2/Fp 4
    23989 
    23990 Chain IDs of 10 residues changed 
    23991 ['1', '5'] 
    23992 
    23993 > select #2/7
    23994 
    23995 37 atoms, 37 bonds, 5 residues, 1 model selected 
    23996 398 
    23997 399 
    23998 >1 
    23999 > renumber #2/7 start 399
    24000 
    24001 5 residues renumbered 
    24002 
    24003 > changechains #2/7 4
    24004 
    24005 Chain IDs of 5 residues changed 
    24006 ['1', '2'] 
    24007 
    24008 > select #2/8
    24009 
    24010 16 atoms, 15 bonds, 2 residues, 1 model selected 
    24011 403 
    24012 404 
    24013 >1 
    24014 > renumber #2/8 start 404
    24015 
    24016 2 residues renumbered 
    24017 
    24018 > changechains #2/8 4
    24019 
    24020 Chain IDs of 2 residues changed 
    24021 ['1', '20'] 
    24022 
    24023 > select #2/FJ
    24024 
    24025 149 atoms, 150 bonds, 20 residues, 1 model selected 
    24026 405 
    24027 407 
    24028 >2 
    24029 > renumber #2/FJ start 407
    24030 
    24031 20 residues renumbered 
    24032 
    24033 > changechains #2/FJ 4
    24034 
    24035 Chain IDs of 20 residues changed 
    24036 ['1', '7'] 
    24037 
    24038 > select #2/Fu
    24039 
    24040 53 atoms, 53 bonds, 7 residues, 1 model selected 
    24041 426 
    24042 426 
    24043 >0 
    24044 
    24045 > delete #2/Fu:1
    24046 
    24047 > renumber #2/Fu start 427
    24048 
    24049 6 residues renumbered 
    24050 
    24051 > changechains #2/Fu 4
    24052 
    24053 Chain IDs of 6 residues changed 
    24054 ['1', '1'] 
    24055 
    24056 > select #2/D6
    24057 
    24058 8 atoms, 7 bonds, 1 residue, 1 model selected 
    24059 432 
    24060 469 
    24061 >37 
    24062 > renumber #2/D6 start 469
    24063 
    24064 1 residues renumbered 
    24065 
    24066 > changechains #2/D6 4
    24067 
    24068 Chain IDs of 1 residues changed 
    24069 ['1', '2'] 
    24070 
    24071 > select #2/Dl
    24072 
    24073 8 atoms, 7 bonds, 2 residues, 1 model selected 
    24074 469 
    24075 470 
    24076 >1 
    24077 > renumber #2/Dl start 470
    24078 
    24079 2 residues renumbered 
    24080 
    24081 > changechains #2/Dl 4
    24082 
    24083 Chain IDs of 2 residues changed 
    24084 ['1', '1'] 
    24085 
    24086 > select #2/DK
    24087 
    24088 9 atoms, 8 bonds, 1 residue, 1 model selected 
    24089 471 
    24090 472 
    24091 >1 
    24092 > renumber #2/DK start 472
    24093 
    24094 1 residues renumbered 
    24095 
    24096 > changechains #2/DK 4
    24097 
    24098 Chain IDs of 1 residues changed 
    24099 ['1', '1'] 
    24100 
    24101 > select #2/Dt
    24102 
    24103 9 atoms, 8 bonds, 1 residue, 1 model selected 
    24104 472 
    24105 473 
    24106 >1 
    24107 > renumber #2/Dt start 473
    24108 
    24109 1 residues renumbered 
    24110 
    24111 > changechains #2/Dt 4
    24112 
    24113 Chain IDs of 1 residues changed 
    24114 ['1', '2'] 
    24115 
    24116 > select #2/C2
    24117 
    24118 10 atoms, 9 bonds, 2 residues, 1 model selected 
    24119 473 
    24120 474 
    24121 >1 
    24122 > renumber #2/C2 start 474
    24123 
    24124 2 residues renumbered 
    24125 
    24126 > changechains #2/C2 4
    24127 
    24128 Chain IDs of 2 residues changed 
    24129 ['1', '3'] 
    24130 
    24131 > select #2/GR
    24132 
    24133 19 atoms, 18 bonds, 3 residues, 1 model selected 
    24134 475 
    24135 476 
    24136 >1 
    24137 > renumber #2/GR start 476
    24138 
    24139 3 residues renumbered 
    24140 
    24141 > changechains #2/GR 4
    24142 
    24143 Chain IDs of 3 residues changed 
    24144 ['1', '12'] 
    24145 
    24146 > select #2/FK
    24147 
    24148 87 atoms, 88 bonds, 12 residues, 1 model selected 
    24149 478 
    24150 511 
    24151 >33 
    24152 > renumber #2/FK start 511
    24153 
    24154 12 residues renumbered 
    24155 
    24156 > changechains #2/FK 4
    24157 
    24158 Chain IDs of 12 residues changed 
    24159 ['1', '3'] 
    24160 
    24161 > select #2/Gb
    24162 
    24163 19 atoms, 18 bonds, 3 residues, 1 model selected 
    24164 522 
    24165 524 
    24166 >2 
    24167 > renumber #2/Gb start 524
    24168 
    24169 3 residues renumbered 
    24170 
    24171 > changechains #2/Gb 4
    24172 
    24173 Chain IDs of 3 residues changed 
    24174 Renumering chain sp|P14548.2|CYB_LEITA_A 
    24175 ['2', '15'] 
    24176 
    24177 > select #2/FI
    24178 
    24179 436 atoms, 446 bonds, 53 residues, 1 model selected 
    24180 0 
    24181 2 
    24182 >2 
    24183 > renumber #2/FI start 2
    24184 
    24185 53 residues renumbered 
    24186 ['1', '1'] 
    24187 
    24188 > select #2/BA
    24189 
    24190 11 atoms, 11 bonds, 1 residue, 1 model selected 
    24191 54 
    24192 55 
    24193 >1 
    24194 > renumber #2/BA start 55
    24195 
    24196 1 residues renumbered 
    24197 
    24198 > changechains #2/BA FI
    24199 
    24200 Chain IDs of 1 residues changed 
    24201 ['1', '1'] 
    24202 
    24203 > select #2/B9
    24204 
    24205 5 atoms, 4 bonds, 1 residue, 1 model selected 
    24206 55 
    24207 56 
    24208 >1 
    24209 > renumber #2/B9 start 56
    24210 
    24211 1 residues renumbered 
    24212 
    24213 > changechains #2/B9 FI
    24214 
    24215 Chain IDs of 1 residues changed 
    24216 ['1', '153'] 
    24217 
    24218 > select #2/Ej
    24219 
    24220 1293 atoms, 1333 bonds, 153 residues, 1 model selected 
    24221 56 
    24222 57 
    24223 >1 
    24224 > renumber #2/Ej start 57
    24225 
    24226 153 residues renumbered 
    24227 
    24228 > changechains #2/Ej FI
    24229 
    24230 Chain IDs of 153 residues changed 
    24231 ['1', '1'] 
    24232 
    24233 > select #2/AC
    24234 
    24235 12 atoms, 12 bonds, 1 residue, 1 model selected 
    24236 209 
    24237 210 
    24238 >1 
    24239 > renumber #2/AC start 210
    24240 
    24241 1 residues renumbered 
    24242 
    24243 > changechains #2/AC FI
    24244 
    24245 Chain IDs of 1 residues changed 
    24246 ['1', '39'] 
    24247 
    24248 > select #2/k
    24249 
    24250 358 atoms, 372 bonds, 39 residues, 1 model selected 
    24251 210 
    24252 211 
    24253 >1 
    24254 > renumber #2/k start 211
    24255 
    24256 39 residues renumbered 
    24257 
    24258 > changechains #2/k FI
    24259 
    24260 Chain IDs of 39 residues changed 
    24261 ['1', '27'] 
    24262 
    24263 > select #2/Fn
    24264 
    24265 200 atoms, 203 bonds, 27 residues, 1 model selected 
    24266 249 
    24267 250 
    24268 >1 
    24269 > renumber #2/Fn start 250
    24270 
    24271 27 residues renumbered 
    24272 
    24273 > changechains #2/Fn FI
    24274 
    24275 Chain IDs of 27 residues changed 
    24276 ['1', '37'] 
    24277 
    24278 > select #2/o
    24279 
    24280 318 atoms, 331 bonds, 37 residues, 1 model selected 
    24281 276 
    24282 276 
    24283 >0 
    24284 
    24285 > delete #2/o:1
    24286 
    24287 > renumber #2/o start 277
    24288 
    24289 36 residues renumbered 
    24290 
    24291 > changechains #2/o FI
    24292 
    24293 Chain IDs of 36 residues changed 
    24294 ['1', '2'] 
    24295 
    24296 > select #2/AE
    24297 
    24298 22 atoms, 23 bonds, 2 residues, 1 model selected 
    24299 312 
    24300 313 
    24301 >1 
    24302 > renumber #2/AE start 313
    24303 
    24304 2 residues renumbered 
    24305 
    24306 > changechains #2/AE FI
    24307 
    24308 Chain IDs of 2 residues changed 
    24309 ['1', '1'] 
    24310 
    24311 > select #2/C8
    24312 
    24313 7 atoms, 7 bonds, 1 residue, 1 model selected 
    24314 314 
    24315 318 
    24316 >4 
    24317 > renumber #2/C8 start 318
    24318 
    24319 1 residues renumbered 
    24320 
    24321 > changechains #2/C8 FI
    24322 
    24323 Chain IDs of 1 residues changed 
    24324 ['1', '1'] 
    24325 
    24326 > select #2/Bo
    24327 
    24328 14 atoms, 15 bonds, 1 residue, 1 model selected 
    24329 318 
    24330 319 
    24331 >1 
    24332 > renumber #2/Bo start 319
    24333 
    24334 1 residues renumbered 
    24335 
    24336 > changechains #2/Bo FI
    24337 
    24338 Chain IDs of 1 residues changed 
    24339 ['1', '56'] 
    24340 
    24341 > select #2/Ep
    24342 
    24343 472 atoms, 486 bonds, 56 residues, 1 model selected 
    24344 319 
    24345 320 
    24346 >1 
    24347 > renumber #2/Ep start 320
    24348 
    24349 56 residues renumbered 
    24350 
    24351 > changechains #2/Ep FI
    24352 
    24353 Chain IDs of 56 residues changed 
    24354 Renumering chain LtaP35.0210.mRNA_A 
    24355 ['1', '9'] 
    24356 
    24357 > select #2/GU
    24358 
    24359 72 atoms, 72 bonds, 9 residues, 1 model selected 
    24360 0 
    24361 1 
    24362 >1 
    24363 > renumber #2/GU start 1
    24364 
    24365 0 residues renumbered 
    24366 ['1', '4'] 
    24367 
    24368 > select #2/FE
    24369 
    24370 28 atoms, 28 bonds, 4 residues, 1 model selected 
    24371 9 
    24372 10 
    24373 >1 
    24374 > renumber #2/FE start 10
    24375 
    24376 4 residues renumbered 
    24377 
    24378 > changechains #2/FE GU
    24379 
    24380 Chain IDs of 4 residues changed 
    24381 ['1', '2'] 
    24382 
    24383 > select #2/Az
    24384 
    24385 12 atoms, 11 bonds, 2 residues, 1 model selected 
    24386 13 
    24387 14 
    24388 >1 
    24389 > renumber #2/Az start 14
    24390 
    24391 2 residues renumbered 
    24392 
    24393 > changechains #2/Az GU
    24394 
    24395 Chain IDs of 2 residues changed 
    24396 ['1', '3'] 
    24397 
    24398 > select #2/J
    24399 
    24400 21 atoms, 20 bonds, 3 residues, 1 model selected 
    24401 15 
    24402 16 
    24403 >1 
    24404 > renumber #2/J start 16
    24405 
    24406 3 residues renumbered 
    24407 
    24408 > changechains #2/J GU
    24409 
    24410 Chain IDs of 3 residues changed 
    24411 ['1', '2'] 
    24412 
    24413 > select #2/AK
    24414 
    24415 12 atoms, 11 bonds, 2 residues, 1 model selected 
    24416 18 
    24417 19 
    24418 >1 
    24419 > renumber #2/AK start 19
    24420 
    24421 2 residues renumbered 
    24422 
    24423 > changechains #2/AK GU
    24424 
    24425 Chain IDs of 2 residues changed 
    24426 ['1', '10'] 
    24427 
    24428 > select #2/h
    24429 
    24430 86 atoms, 88 bonds, 10 residues, 1 model selected 
    24431 20 
    24432 21 
    24433 >1 
    24434 > renumber #2/h start 21
    24435 
    24436 10 residues renumbered 
    24437 
    24438 > changechains #2/h GU
    24439 
    24440 Chain IDs of 10 residues changed 
    24441 ['1', '4'] 
    24442 
    24443 > select #2/i
    24444 
    24445 44 atoms, 46 bonds, 4 residues, 1 model selected 
    24446 30 
    24447 31 
    24448 >1 
    24449 > renumber #2/i start 31
    24450 
    24451 4 residues renumbered 
    24452 
    24453 > changechains #2/i GU
    24454 
    24455 Chain IDs of 4 residues changed 
    24456 ['1', '1'] 
    24457 
    24458 > select #2/Cw
    24459 
    24460 8 atoms, 7 bonds, 1 residue, 1 model selected 
    24461 34 
    24462 35 
    24463 >1 
    24464 > renumber #2/Cw start 35
    24465 
    24466 1 residues renumbered 
    24467 
    24468 > changechains #2/Cw GU
    24469 
    24470 Chain IDs of 1 residues changed 
    24471 ['1', '2'] 
    24472 
    24473 > select #2/As
    24474 
    24475 16 atoms, 16 bonds, 2 residues, 1 model selected 
    24476 35 
    24477 36 
    24478 >1 
    24479 > renumber #2/As start 36
    24480 
    24481 2 residues renumbered 
    24482 
    24483 > changechains #2/As GU
    24484 
    24485 Chain IDs of 2 residues changed 
    24486 ['1', '30'] 
    24487 
    24488 > select #2/r
    24489 
    24490 242 atoms, 242 bonds, 30 residues, 1 model selected 
    24491 37 
    24492 38 
    24493 >1 
    24494 > renumber #2/r start 38
    24495 
    24496 30 residues renumbered 
    24497 
    24498 > changechains #2/r GU
    24499 
    24500 Chain IDs of 30 residues changed 
    24501 ['3', '45'] 
    24502 
    24503 > select #2/E5
    24504 
    24505 401 atoms, 418 bonds, 48 residues, 1 model selected 
    24506 67 
    24507 68 
    24508 >1 
    24509 > renumber #2/E5 start 68
    24510 
    24511 48 residues renumbered 
    24512 
    24513 > changechains #2/E5 GU
    24514 
    24515 Chain IDs of 48 residues changed 
    24516 ['1', '9'] 
    24517 
    24518 > select #2/l
    24519 
    24520 68 atoms, 68 bonds, 9 residues, 1 model selected 
    24521 115 
    24522 116 
    24523 >1 
    24524 > renumber #2/l start 116
    24525 
    24526 9 residues renumbered 
    24527 
    24528 > changechains #2/l GU
    24529 
    24530 Chain IDs of 9 residues changed 
    24531 ['1', '2'] 
    24532 
    24533 > select #2/BD
    24534 
    24535 11 atoms, 10 bonds, 2 residues, 1 model selected 
    24536 124 
    24537 125 
    24538 >1 
    24539 > renumber #2/BD start 125
    24540 
    24541 2 residues renumbered 
    24542 
    24543 > changechains #2/BD GU
    24544 
    24545 Chain IDs of 2 residues changed 
    24546 ['1', '59'] 
    24547 
    24548 > select #2/Em
    24549 
    24550 552 atoms, 567 bonds, 65 residues, 1 model selected 
    24551 126 
    24552 127 
    24553 >1 
    24554 > renumber #2/Em start 127
    24555 
    24556 65 residues renumbered 
    24557 
    24558 > changechains #2/Em GU
    24559 
    24560 Chain IDs of 65 residues changed 
    24561 ['1', '13'] 
    24562 
    24563 > select #2/FW
    24564 
    24565 101 atoms, 104 bonds, 13 residues, 1 model selected 
    24566 191 
    24567 191 
    24568 >0 
    24569 
    24570 > delete #2/FW:1
    24571 
    24572 > renumber #2/FW start 192
    24573 
    24574 12 residues renumbered 
    24575 
    24576 > changechains #2/FW GU
    24577 
    24578 Chain IDs of 12 residues changed 
    24579 Renumering chain GET91263.1_A 
    24580 ['1', '34'] 
    24581 
    24582 > select #2/FL
    24583 
    24584 257 atoms, 261 bonds, 34 residues, 1 model selected 
    24585 0 
    24586 4 
    24587 >4 
    24588 > renumber #2/FL start 4
    24589 
    24590 34 residues renumbered 
    24591 ['1', '5'] 
    24592 
    24593 > select #2/FP
    24594 
    24595 31 atoms, 31 bonds, 5 residues, 1 model selected 
    24596 37 
    24597 39 
    24598 >2 
    24599 > renumber #2/FP start 39
    24600 
    24601 5 residues renumbered 
    24602 
    24603 > changechains #2/FP FL
    24604 
    24605 Chain IDs of 5 residues changed 
    24606 ['3', '25'] 
    24607 
    24608 > select #2/1
    24609 
    24610 220 atoms, 226 bonds, 26 residues, 1 model selected 
    24611 43 
    24612 45 
    24613 >2 
    24614 > renumber #2/1 start 45
    24615 
    24616 26 residues renumbered 
    24617 
    24618 > changechains #2/1 FL
    24619 
    24620 Chain IDs of 26 residues changed 
    24621 Renumering chain LtaP35.0250.mRNA_A 
    24622 ['1', '4'] 
    24623 
    24624 > select #2/GA
    24625 
    24626 26 atoms, 27 bonds, 4 residues, 1 model selected 
    24627 0 
    24628 13 
    24629 >13 
    24630 > renumber #2/GA start 13
    24631 
    24632 4 residues renumbered 
    24633 ['1', '3'] 
    24634 
    24635 > select #2/a
    24636 
    24637 19 atoms, 18 bonds, 3 residues, 1 model selected 
    24638 16 
    24639 17 
    24640 >1 
    24641 > renumber #2/a start 17
    24642 
    24643 3 residues renumbered 
    24644 
    24645 > changechains #2/a GA
    24646 
    24647 Chain IDs of 3 residues changed 
    24648 ['6', '20'] 
    24649 
    24650 > select #2/EQ
    24651 
    24652 192 atoms, 194 bonds, 24 residues, 1 model selected 
    24653 19 
    24654 20 
    24655 >1 
    24656 > renumber #2/EQ start 20
    24657 
    24658 24 residues renumbered 
    24659 
    24660 > changechains #2/EQ GA
    24661 
    24662 Chain IDs of 24 residues changed 
    24663 ['1', '11'] 
    24664 
    24665 > select #2/En
    24666 
    24667 90 atoms, 92 bonds, 11 residues, 1 model selected 
    24668 43 
    24669 45 
    24670 >2 
    24671 > renumber #2/En start 45
    24672 
    24673 11 residues renumbered 
    24674 
    24675 > changechains #2/En GA
    24676 
    24677 Chain IDs of 11 residues changed 
    24678 ['3', '39'] 
    24679 
    24680 > select #2/m
    24681 
    24682 342 atoms, 353 bonds, 39 residues, 1 model selected 
    24683 55 
    24684 57 
    24685 >2 
    24686 > renumber #2/m start 57
    24687 
    24688 39 residues renumbered 
    24689 
    24690 > changechains #2/m GA
    24691 
    24692 Chain IDs of 39 residues changed 
    24693 ['1', '27'] 
    24694 
    24695 > select #2/Eo
    24696 
    24697 229 atoms, 235 bonds, 27 residues, 1 model selected 
    24698 95 
    24699 96 
    24700 >1 
    24701 > renumber #2/Eo start 96
    24702 
    24703 27 residues renumbered 
    24704 
    24705 > changechains #2/Eo GA
    24706 
    24707 Chain IDs of 27 residues changed 
    24708 Renumering chain GET89654.1_A 
    24709 ['1', '21'] 
    24710 
    24711 > select #2/GQ
    24712 
    24713 149 atoms, 153 bonds, 21 residues, 1 model selected 
    24714 0 
    24715 13 
    24716 >13 
    24717 > renumber #2/GQ start 13
    24718 
    24719 21 residues renumbered 
    24720 ['1', '1'] 
    24721 
    24722 > select #2/B2
    24723 
    24724 11 atoms, 11 bonds, 1 residue, 1 model selected 
    24725 33 
    24726 34 
    24727 >1 
    24728 > renumber #2/B2 start 34
    24729 
    24730 1 residues renumbered 
    24731 
    24732 > changechains #2/B2 GQ
    24733 
    24734 Chain IDs of 1 residues changed 
    24735 ['1', '4'] 
    24736 
    24737 > select #2/AB
    24738 
    24739 32 atoms, 32 bonds, 4 residues, 1 model selected 
    24740 34 
    24741 35 
    24742 >1 
    24743 > renumber #2/AB start 35
    24744 
    24745 4 residues renumbered 
    24746 
    24747 > changechains #2/AB GQ
    24748 
    24749 Chain IDs of 4 residues changed 
    24750 ['2', '33'] 
    24751 
    24752 > select #2/FM
    24753 
    24754 254 atoms, 256 bonds, 33 residues, 1 model selected 
    24755 38 
    24756 39 
    24757 >1 
    24758 > renumber #2/FM start 39
    24759 
    24760 33 residues renumbered 
    24761 
    24762 > changechains #2/FM GQ
    24763 
    24764 Chain IDs of 33 residues changed 
    24765 ['1', '1'] 
    24766 
    24767 > select #2/CP
    24768 
    24769 8 atoms, 7 bonds, 1 residue, 1 model selected 
    24770 71 
    24771 72 
    24772 >1 
    24773 > renumber #2/CP start 72
    24774 
    24775 1 residues renumbered 
    24776 
    24777 > changechains #2/CP GQ
    24778 
    24779 Chain IDs of 1 residues changed 
    24780 ['1', '1'] 
    24781 
    24782 > select #2/BG
    24783 
    24784 4 atoms, 3 bonds, 1 residue, 1 model selected 
    24785 72 
    24786 73 
    24787 >1 
    24788 > renumber #2/BG start 73
    24789 
    24790 1 residues renumbered 
    24791 
    24792 > changechains #2/BG GQ
    24793 
    24794 Chain IDs of 1 residues changed 
    24795 ['1', '2'] 
    24796 
    24797 > select #2/A8
    24798 
    24799 15 atoms, 15 bonds, 2 residues, 1 model selected 
    24800 73 
    24801 74 
    24802 >1 
    24803 > renumber #2/A8 start 74
    24804 
    24805 2 residues renumbered 
    24806 
    24807 > changechains #2/A8 GQ
    24808 
    24809 Chain IDs of 2 residues changed 
    24810 ['1', '1'] 
    24811 
    24812 > select #2/B0
    24813 
    24814 4 atoms, 3 bonds, 1 residue, 1 model selected 
    24815 75 
    24816 76 
    24817 >1 
    24818 > renumber #2/B0 start 76
    24819 
    24820 1 residues renumbered 
    24821 
    24822 > changechains #2/B0 GQ
    24823 
    24824 Chain IDs of 1 residues changed 
    24825 ['1', '1'] 
    24826 
    24827 > select #2/C1
    24828 
    24829 5 atoms, 4 bonds, 1 residue, 1 model selected 
    24830 76 
    24831 77 
    24832 >1 
    24833 > renumber #2/C1 start 77
    24834 
    24835 1 residues renumbered 
    24836 
    24837 > changechains #2/C1 GQ
    24838 
    24839 Chain IDs of 1 residues changed 
    24840 ['1', '8'] 
    24841 
    24842 > select #2/GN
    24843 
    24844 58 atoms, 58 bonds, 8 residues, 1 model selected 
    24845 77 
    24846 78 
    24847 >1 
    24848 > renumber #2/GN start 78
    24849 
    24850 8 residues renumbered 
    24851 
    24852 > changechains #2/GN GQ
    24853 
    24854 Chain IDs of 8 residues changed 
    24855 
    24856 > delete #2/FN:35
    24857 
    24858 > renumber #2/FN:36-69 start 45
    24859 
    24860 34 residues renumbered 
    24861 
    24862 > renumber #2/FN start 45
    24863 
    24864 68 residues renumbered 
    24865 
    24866 > delete #2/FN:505
    24867 
    24868 > delete #2/FN:508
    24869 
    24870 > renumber #2/FN:479-512 start 479 relative false
    24871 
    24872 No residues specified 
    24873 
    24874 > changechains #2/FN 4
    24875 
    24876 Proposed chainID change conflicts with existing residue
    24877 renamedAndRenumberedModel #2/4 CYS 101 
    24878 
    24879 > select #2/FN
    24880 
    24881 518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected 
    24882 
    24883 > select #2/FN
    24884 
    24885 518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected 
    24886 
    24887 > select #2/FN
    24888 
    24889 518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected 
    24890 
    24891 > view #2/FN
    24892 
    24893 > hide #1 models
    24894 
    24895 > show #1 models
    24896 
    24897 > hide #!2 models
    24898 
    24899 > show #!2 models
    24900 
    24901 > hide #1 models
    24902 
    24903 > close #2
    24904 
    24905 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    24906 > Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
    24907 > #1 alignmentsMod1Mod.txt
    24908 
    24909 ['1', '8'] 
    24910 ['1', '8'] 
    24911 ['11'] 
    24912 ['1', '1'] 
    24913 ['11'] 
    24914 ['1', '1'] 
    24915 ['1', '3'] 
    24916 ['1', '3'] 
    24917 ['11'] 
    24918 ['1', '1'] 
    24919 ['1', '4'] 
    24920 ['1', '4'] 
    24921 ['1', '15'] 
    24922 ['1', '15'] 
    24923 ['11'] 
    24924 ['1', '1'] 
    24925 ['1', '9'] 
    24926 ['1', '9'] 
    24927 ['1', '4'] 
    24928 ['1', '4'] 
    24929 ['1', '28'] 
    24930 ['1', '28'] 
    24931 ['1', '15'] 
    24932 ['1', '15'] 
    24933 ['7', '15'] 
    24934 ['7', '15'] 
    24935 ['2', '44'] 
    24936 ['2', '44'] 
    24937 ['1', '7'] 
    24938 ['1', '7'] 
    24939 ['1', '8'] 
    24940 ['1', '8'] 
    24941 ['1', '13'] 
    24942 ['1', '13'] 
    24943 ['11'] 
    24944 ['1', '1'] 
    24945 ['1', '31'] 
    24946 ['1', '31'] 
    24947 ['12'] 
    24948 ['1', '2'] 
    24949 ['6', '22'] 
    24950 ['6', '22'] 
    24951 ['5', '21'] 
    24952 ['5', '21'] 
    24953 ['3', '140'] 
    24954 ['3', '140'] 
    24955 ['1', '3'] 
    24956 ['1', '3'] 
    24957 ['1', '8'] 
    24958 ['1', '8'] 
    24959 ['2', '18'] 
    24960 ['2', '18'] 
    24961 ['1', '7'] 
    24962 ['1', '7'] 
    24963 ['7', '12'] 
    24964 ['7', '12'] 
    24965 ['1', '10'] 
    24966 ['1', '10'] 
    24967 ['12'] 
    24968 ['1', '2'] 
    24969 ['1', '10'] 
    24970 ['1', '10'] 
    24971 ['4', '63'] 
    24972 ['4', '63'] 
    24973 ['9', '11'] 
    24974 ['9', '11'] 
    24975 ['11'] 
    24976 ['1', '1'] 
    24977 ['1', '5'] 
    24978 ['1', '5'] 
    24979 ['5', '33'] 
    24980 ['5', '33'] 
    24981 ['1', '4'] 
    24982 ['1', '4'] 
    24983 ['1', '74'] 
    24984 ['1', '74'] 
    24985 ['3', '18'] 
    24986 ['3', '18'] 
    24987 ['2', '22'] 
    24988 ['2', '22'] 
    24989 ['1', '4'] 
    24990 ['1', '4'] 
    24991 ['1', '3'] 
    24992 ['1', '3'] 
    24993 ['2', '81'] 
    24994 ['2', '81'] 
    24995 ['1', '8'] 
    24996 ['1', '8'] 
    24997 ['1', '5'] 
    24998 ['1', '5'] 
    24999 ['14', '47'] 
    25000 ['14', '47'] 
    25001 ['1', '5'] 
    25002 ['1', '5'] 
    25003 ['1', '3'] 
    25004 ['1', '3'] 
    25005 ['11'] 
    25006 ['1', '1'] 
    25007 ['1', '7'] 
    25008 ['1', '7'] 
    25009 ['1', '14'] 
    25010 ['1', '14'] 
    25011 ['1', '5'] 
    25012 ['1', '5'] 
    25013 ['1', '4'] 
    25014 ['1', '4'] 
    25015 ['1', '7'] 
    25016 ['1', '7'] 
    25017 ['1', '14'] 
    25018 ['1', '14'] 
    25019 ['1', '25'] 
    25020 ['1', '25'] 
    25021 ['1', '20'] 
    25022 ['1', '20'] 
    25023 ['1', '8'] 
    25024 ['1', '8'] 
    25025 ['11'] 
    25026 ['1', '1'] 
    25027 ['12'] 
    25028 ['1', '2'] 
    25029 ['12'] 
    25030 ['1', '2'] 
    25031 ['1', '18'] 
    25032 ['1', '18'] 
    25033 ['1', '70'] 
    25034 ['1', '70'] 
    25035 ['12'] 
    25036 ['1', '2'] 
    25037 ['12'] 
    25038 ['1', '2'] 
    25039 ['1', '12'] 
    25040 ['1', '12'] 
    25041 ['1', '5'] 
    25042 ['1', '5'] 
    25043 ['1', '14'] 
    25044 ['1', '14'] 
    25045 ['1', '3'] 
    25046 ['1', '3'] 
    25047 ['12'] 
    25048 ['1', '2'] 
    25049 ['1', '3'] 
    25050 ['1', '3'] 
    25051 ['1', '7'] 
    25052 ['1', '7'] 
    25053 ['1', '32'] 
    25054 ['1', '32'] 
    25055 ['11'] 
    25056 ['1', '1'] 
    25057 ['12'] 
    25058 ['1', '2'] 
    25059 ['9', '18'] 
    25060 ['9', '18'] 
    25061 ['11'] 
    25062 ['1', '1'] 
    25063 ['1', '4'] 
    25064 ['1', '4'] 
    25065 ['12'] 
    25066 ['1', '2'] 
    25067 ['1', '10'] 
    25068 ['1', '10'] 
    25069 ['1', '5'] 
    25070 ['1', '5'] 
    25071 ['12'] 
    25072 ['1', '2'] 
    25073 ['1', '20'] 
    25074 ['1', '20'] 
    25075 ['1', '7'] 
    25076 ['1', '7'] 
    25077 ['11'] 
    25078 ['1', '1'] 
    25079 ['12'] 
    25080 ['1', '2'] 
    25081 ['11'] 
    25082 ['1', '1'] 
    25083 ['11'] 
    25084 ['1', '1'] 
    25085 ['12'] 
    25086 ['1', '2'] 
    25087 ['1', '3'] 
    25088 ['1', '3'] 
    25089 ['1', '12'] 
    25090 ['1', '12'] 
    25091 ['1', '3'] 
    25092 ['1', '3'] 
    25093 ['2', '15'] 
    25094 ['2', '15'] 
    25095 ['11'] 
    25096 ['1', '1'] 
    25097 ['11'] 
    25098 ['1', '1'] 
    25099 ['1', '153'] 
    25100 ['1', '153'] 
    25101 ['11'] 
    25102 ['1', '1'] 
    25103 ['1', '39'] 
    25104 ['1', '39'] 
    25105 ['1', '27'] 
    25106 ['1', '27'] 
    25107 ['1', '37'] 
    25108 ['1', '37'] 
    25109 ['12'] 
    25110 ['1', '2'] 
    25111 ['11'] 
    25112 ['1', '1'] 
    25113 ['11'] 
    25114 ['1', '1'] 
    25115 ['1', '56'] 
    25116 ['1', '56'] 
    25117 ['1', '9'] 
    25118 ['1', '9'] 
    25119 ['1', '4'] 
    25120 ['1', '4'] 
    25121 ['12'] 
    25122 ['1', '2'] 
    25123 ['1', '3'] 
    25124 ['1', '3'] 
    25125 ['12'] 
    25126 ['1', '2'] 
    25127 ['1', '10'] 
    25128 ['1', '10'] 
    25129 ['1', '4'] 
    25130 ['1', '4'] 
    25131 ['11'] 
    25132 ['1', '1'] 
    25133 ['12'] 
    25134 ['1', '2'] 
    25135 ['1', '30'] 
    25136 ['1', '30'] 
    25137 ['3', '45'] 
    25138 ['3', '45'] 
    25139 ['1', '9'] 
    25140 ['1', '9'] 
    25141 ['12'] 
    25142 ['1', '2'] 
    25143 ['1', '59'] 
    25144 ['1', '59'] 
    25145 ['1', '13'] 
    25146 ['1', '13'] 
    25147 ['1', '34'] 
    25148 ['1', '34'] 
    25149 ['1', '5'] 
    25150 ['1', '5'] 
    25151 ['3', '25'] 
    25152 ['3', '25'] 
    25153 ['1', '4'] 
    25154 ['1', '4'] 
    25155 ['1', '3'] 
    25156 ['1', '3'] 
    25157 ['6', '20'] 
    25158 ['6', '20'] 
    25159 ['1', '11'] 
    25160 ['1', '11'] 
    25161 ['3', '39'] 
    25162 ['3', '39'] 
    25163 ['1', '27'] 
    25164 ['1', '27'] 
    25165 ['1', '21'] 
    25166 ['1', '21'] 
    25167 ['11'] 
    25168 ['1', '1'] 
    25169 ['1', '4'] 
    25170 ['1', '4'] 
    25171 ['2', '33'] 
    25172 ['2', '33'] 
    25173 ['11'] 
    25174 ['1', '1'] 
    25175 ['11'] 
    25176 ['1', '1'] 
    25177 ['12'] 
    25178 ['1', '2'] 
    25179 ['11'] 
    25180 ['1', '1'] 
    25181 ['11'] 
    25182 ['1', '1'] 
    25183 ['1', '8'] 
    25184 ['1', '8'] 
    25185 LtaP35.1590.mRNA_A 
    25186 LtaP35.1450.mRNA_A 
    25187 LtaP07.0060.mRNA_A 
    25188 LtaP32.3800.mRNA_A 
    25189 LtaP13.0770.mRNA_A 
    25190 sp|P14548.2|CYB_LEITA_A 
    25191 LtaP35.0210.mRNA_A 
    25192 GET91263.1_A 
    25193 LtaP35.0250.mRNA_A 
    25194 GET89654.1_A 
    25195 
    25196 > combine #1 close false name renamedAndRenumberedModel
    25197 
    25198 Renumering chain LtaP35.1590.mRNA_A 
    25199 ['1', '8'] 
    25200 
    25201 > select #2/GC
    25202 
    25203 66 atoms, 66 bonds, 8 residues, 1 model selected 
    25204 0 
    25205 17 
    25206 >17 
    25207 > renumber #2/GC start 17
    25208 
    25209 8 residues renumbered 
    25210 ['1', '1'] 
    25211 
    25212 > select #2/Bd
    25213 
    25214 4 atoms, 3 bonds, 1 residue, 1 model selected 
    25215 24 
    25216 25 
    25217 >1 
    25218 > renumber #2/Bd start 25
    25219 
    25220 1 residues renumbered 
    25221 
    25222 > changechains #2/Bd GC
    25223 
    25224 Chain IDs of 1 residues changed 
    25225 ['1', '1'] 
    25226 
    25227 > select #2/Ca
    25228 
    25229 4 atoms, 3 bonds, 1 residue, 1 model selected 
    25230 25 
    25231 26 
    25232 >1 
    25233 > renumber #2/Ca start 26
    25234 
    25235 1 residues renumbered 
    25236 
    25237 > changechains #2/Ca GC
    25238 
    25239 Chain IDs of 1 residues changed 
    25240 ['1', '3'] 
    25241 
    25242 > select #2/AP
    25243 
    25244 19 atoms, 19 bonds, 3 residues, 1 model selected 
    25245 26 
    25246 27 
    25247 >1 
    25248 > renumber #2/AP start 27
    25249 
    25250 3 residues renumbered 
    25251 
    25252 > changechains #2/AP GC
    25253 
    25254 Chain IDs of 3 residues changed 
    25255 ['1', '1'] 
    25256 
    25257 > select #2/BN
    25258 
    25259 6 atoms, 5 bonds, 1 residue, 1 model selected 
    25260 29 
    25261 30 
    25262 >1 
    25263 > renumber #2/BN start 30
    25264 
    25265 1 residues renumbered 
    25266 
    25267 > changechains #2/BN GC
    25268 
    25269 Chain IDs of 1 residues changed 
    25270 ['1', '4'] 
    25271 
    25272 > select #2/FF
    25273 
    25274 32 atoms, 32 bonds, 4 residues, 1 model selected 
    25275 30 
    25276 31 
    25277 >1 
    25278 > renumber #2/FF start 31
    25279 
    25280 4 residues renumbered 
    25281 
    25282 > changechains #2/FF GC
    25283 
    25284 Chain IDs of 4 residues changed 
    25285 ['1', '15'] 
    25286 
    25287 > select #2/Fo
    25288 
    25289 103 atoms, 106 bonds, 15 residues, 1 model selected 
    25290 34 
    25291 35 
    25292 >1 
    25293 > renumber #2/Fo start 35
    25294 
    25295 15 residues renumbered 
    25296 
    25297 > changechains #2/Fo GC
    25298 
    25299 Chain IDs of 15 residues changed 
    25300 ['1', '1'] 
    25301 
    25302 > select #2/Cy
    25303 
    25304 8 atoms, 7 bonds, 1 residue, 1 model selected 
    25305 49 
    25306 50 
    25307 >1 
    25308 > renumber #2/Cy start 50
    25309 
    25310 1 residues renumbered 
    25311 
    25312 > changechains #2/Cy GC
    25313 
    25314 Chain IDs of 1 residues changed 
    25315 ['1', '9'] 
    25316 
    25317 > select #2/EY
    25318 
    25319 66 atoms, 67 bonds, 9 residues, 1 model selected 
    25320 50 
    25321 51 
    25322 >1 
    25323 > renumber #2/EY start 51
    25324 
    25325 9 residues renumbered 
    25326 
    25327 > changechains #2/EY GC
    25328 
    25329 Chain IDs of 9 residues changed 
    25330 ['1', '4'] 
    25331 
    25332 > select #2/FV
    25333 
    25334 24 atoms, 23 bonds, 4 residues, 1 model selected 
    25335 59 
    25336 60 
    25337 >1 
    25338 > renumber #2/FV start 60
    25339 
    25340 4 residues renumbered 
    25341 
    25342 > changechains #2/FV GC
    25343 
    25344 Chain IDs of 4 residues changed 
    25345 ['1', '28'] 
    25346 
    25347 > select #2/Ey
    25348 
    25349 210 atoms, 213 bonds, 28 residues, 1 model selected 
    25350 63 
    25351 64 
    25352 >1 
    25353 > renumber #2/Ey start 64
    25354 
    25355 28 residues renumbered 
    25356 
    25357 > changechains #2/Ey GC
    25358 
    25359 Chain IDs of 28 residues changed 
    25360 ['1', '15'] 
    25361 
    25362 > select #2/K
    25363 
    25364 102 atoms, 102 bonds, 15 residues, 1 model selected 
    25365 91 
    25366 92 
    25367 >1 
    25368 > renumber #2/K start 92
    25369 
    25370 15 residues renumbered 
    25371 
    25372 > changechains #2/K GC
    25373 
    25374 Chain IDs of 15 residues changed 
    25375 ['7', '15'] 
    25376 
    25377 > select #2/L
    25378 
    25379 184 atoms, 187 bonds, 22 residues, 1 model selected 
    25380 106 
    25381 107 
    25382 >1 
    25383 > renumber #2/L start 107
    25384 
    25385 22 residues renumbered 
    25386 
    25387 > changechains #2/L GC
    25388 
    25389 Chain IDs of 22 residues changed 
    25390 ['2', '44'] 
    25391 
    25392 > select #2/Ee
    25393 
    25394 355 atoms, 363 bonds, 44 residues, 1 model selected 
    25395 128 
    25396 129 
    25397 >1 
    25398 > renumber #2/Ee start 129
    25399 
    25400 44 residues renumbered 
    25401 
    25402 > changechains #2/Ee GC
    25403 
    25404 Chain IDs of 44 residues changed 
    25405 Renumering chain LtaP35.1450.mRNA_A 
    25406 ['1', '7'] 
    25407 
    25408 > select #2/Gc
    25409 
    25410 52 atoms, 52 bonds, 7 residues, 1 model selected 
    25411 0 
    25412 2 
    25413 >2 
    25414 > renumber #2/Gc start 2
    25415 
    25416 7 residues renumbered 
    25417 ['1', '8'] 
    25418 
    25419 > select #2/Ex
    25420 
    25421 55 atoms, 56 bonds, 8 residues, 1 model selected 
    25422 8 
    25423 10 
    25424 >2 
    25425 > renumber #2/Ex start 10
    25426 
    25427 8 residues renumbered 
    25428 
    25429 > changechains #2/Ex Gc
    25430 
    25431 Chain IDs of 8 residues changed 
    25432 ['1', '13'] 
    25433 
    25434 > select #2/E6
    25435 
    25436 98 atoms, 100 bonds, 13 residues, 1 model selected 
    25437 17 
    25438 18 
    25439 >1 
    25440 > renumber #2/E6 start 18
    25441 
    25442 13 residues renumbered 
    25443 
    25444 > changechains #2/E6 Gc
    25445 
    25446 Chain IDs of 13 residues changed 
    25447 ['1', '1'] 
    25448 
    25449 > select #2/Ai
    25450 
    25451 11 atoms, 10 bonds, 1 residue, 1 model selected 
    25452 30 
    25453 31 
    25454 >1 
    25455 > renumber #2/Ai start 31
    25456 
    25457 1 residues renumbered 
    25458 
    25459 > changechains #2/Ai Gc
    25460 
    25461 Chain IDs of 1 residues changed 
    25462 ['1', '31'] 
    25463 
    25464 > select #2/0
    25465 
    25466 233 atoms, 235 bonds, 31 residues, 1 model selected 
    25467 31 
    25468 32 
    25469 >1 
    25470 > renumber #2/0 start 32
    25471 
    25472 31 residues renumbered 
    25473 
    25474 > changechains #2/0 Gc
    25475 
    25476 Chain IDs of 31 residues changed 
    25477 ['1', '2'] 
    25478 
    25479 > select #2/U
    25480 
    25481 11 atoms, 10 bonds, 2 residues, 1 model selected 
    25482 62 
    25483 63 
    25484 >1 
    25485 > renumber #2/U start 63
    25486 
    25487 2 residues renumbered 
    25488 
    25489 > changechains #2/U Gc
    25490 
    25491 Chain IDs of 2 residues changed 
    25492 ['6', '22'] 
    25493 
    25494 > select #2/d
    25495 
    25496 176 atoms, 182 bonds, 22 residues, 1 model selected 
    25497 64 
    25498 65 
    25499 >1 
    25500 > renumber #2/d start 65
    25501 
    25502 22 residues renumbered 
    25503 
    25504 > changechains #2/d Gc
    25505 
    25506 Chain IDs of 22 residues changed 
    25507 ['5', '21'] 
    25508 
    25509 > select #2/EV
    25510 
    25511 161 atoms, 160 bonds, 21 residues, 1 model selected 
    25512 86 
    25513 87 
    25514 >1 
    25515 > renumber #2/EV start 87
    25516 
    25517 21 residues renumbered 
    25518 
    25519 > changechains #2/EV Gc
    25520 
    25521 Chain IDs of 21 residues changed 
    25522 
    25523 > delete #2/Ew:132
    25524 
    25525 > renumber #2/Ew:133-9999999 start 132
    25526 
    25527 11 residues renumbered 
    25528 ['3', '139'] 
    25529 
    25530 > select #2/Ew
    25531 
    25532 1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected 
    25533 107 
    25534 108 
    25535 >1 
    25536 > renumber #2/Ew start 108
    25537 
    25538 142 residues renumbered 
    25539 
    25540 > changechains #2/Ew Gc
    25541 
    25542 Chain IDs of 142 residues changed 
    25543 ['1', '3'] 
    25544 
    25545 > select #2/GO
    25546 
    25547 18 atoms, 18 bonds, 3 residues, 1 model selected 
    25548 249 
    25549 250 
    25550 >1 
    25551 > renumber #2/GO start 250
    25552 
    25553 3 residues renumbered 
    25554 
    25555 > changechains #2/GO Gc
    25556 
    25557 Chain IDs of 3 residues changed 
    25558 ['1', '8'] 
    25559 
    25560 > select #2/Z
    25561 
    25562 69 atoms, 71 bonds, 8 residues, 1 model selected 
    25563 252 
    25564 253 
    25565 >1 
    25566 > renumber #2/Z start 253
    25567 
    25568 8 residues renumbered 
    25569 
    25570 > changechains #2/Z Gc
    25571 
    25572 Chain IDs of 8 residues changed 
    25573 ['2', '18'] 
    25574 
    25575 > select #2/ES
    25576 
    25577 163 atoms, 164 bonds, 18 residues, 1 model selected 
    25578 260 
    25579 262 
    25580 >2 
    25581 > renumber #2/ES start 262
    25582 
    25583 18 residues renumbered 
    25584 
    25585 > changechains #2/ES Gc
    25586 
    25587 Chain IDs of 18 residues changed 
    25588 ['1', '7'] 
    25589 
    25590 > select #2/Fc
    25591 
    25592 40 atoms, 41 bonds, 7 residues, 1 model selected 
    25593 279 
    25594 282 
    25595 >3 
    25596 > renumber #2/Fc start 282
    25597 
    25598 7 residues renumbered 
    25599 
    25600 > changechains #2/Fc Gc
    25601 
    25602 Chain IDs of 7 residues changed 
    25603 ['7', '12'] 
    25604 
    25605 > select #2/Fa
    25606 
    25607 177 atoms, 179 bonds, 24 residues, 1 model selected 
    25608 288 
    25609 289 
    25610 >1 
    25611 > renumber #2/Fa start 289
    25612 
    25613 24 residues renumbered 
    25614 
    25615 > changechains #2/Fa Gc
    25616 
    25617 Chain IDs of 24 residues changed 
    25618 ['1', '10'] 
    25619 
    25620 > select #2/2
    25621 
    25622 81 atoms, 83 bonds, 10 residues, 1 model selected 
    25623 312 
    25624 314 
    25625 >2 
    25626 > renumber #2/2 start 314
    25627 
    25628 10 residues renumbered 
    25629 
    25630 > changechains #2/2 Gc
    25631 
    25632 Chain IDs of 10 residues changed 
    25633 ['1', '2'] 
    25634 
    25635 > select #2/E
    25636 
    25637 16 atoms, 16 bonds, 2 residues, 1 model selected 
    25638 323 
    25639 326 
    25640 >3 
    25641 > renumber #2/E start 326
    25642 
    25643 2 residues renumbered 
    25644 
    25645 > changechains #2/E Gc
    25646 
    25647 Chain IDs of 2 residues changed 
    25648 ['1', '10'] 
    25649 
    25650 > select #2/Ff
    25651 
    25652 75 atoms, 76 bonds, 10 residues, 1 model selected 
    25653 327 
    25654 328 
    25655 >1 
    25656 > renumber #2/Ff start 328
    25657 
    25658 10 residues renumbered 
    25659 
    25660 > changechains #2/Ff Gc
    25661 
    25662 Chain IDs of 10 residues changed 
    25663 ['4', '63'] 
    25664 
    25665 > select #2/E2
    25666 
    25667 1095 atoms, 1118 bonds, 132 residues, 1 model selected 
    25668 337 
    25669 338 
    25670 >1 
    25671 > renumber #2/E2 start 338
    25672 
    25673 132 residues renumbered 
    25674 
    25675 > changechains #2/E2 Gc
    25676 
    25677 Chain IDs of 132 residues changed 
    25678 ['9', '11'] 
    25679 
    25680 > select #2/W
    25681 
    25682 182 atoms, 189 bonds, 20 residues, 1 model selected 
    25683 469 
    25684 470 
    25685 >1 
    25686 > renumber #2/W start 470
    25687 
    25688 20 residues renumbered 
    25689 
    25690 > changechains #2/W Gc
    25691 
    25692 Chain IDs of 20 residues changed 
    25693 ['1', '1'] 
    25694 
    25695 > select #2/BM
    25696 
    25697 7 atoms, 6 bonds, 1 residue, 1 model selected 
    25698 489 
    25699 490 
    25700 >1 
    25701 > renumber #2/BM start 490
    25702 
    25703 1 residues renumbered 
    25704 
    25705 > changechains #2/BM Gc
    25706 
    25707 Chain IDs of 1 residues changed 
    25708 Renumering chain LtaP07.0060.mRNA_A 
    25709 ['1', '5'] 
    25710 
    25711 > select #2/A
    25712 
    25713 32 atoms, 33 bonds, 5 residues, 1 model selected 
    25714 0 
    25715 5 
    25716 >5 
    25717 > renumber #2/A start 5
    25718 
    25719 5 residues renumbered 
    25720 ['5', '33'] 
    25721 
    25722 > select #2/Fd
    25723 
    25724 314 atoms, 324 bonds, 36 residues, 1 model selected 
    25725 9 
    25726 10 
    25727 >1 
    25728 > renumber #2/Fd start 10
    25729 
    25730 36 residues renumbered 
    25731 
    25732 > changechains #2/Fd A
    25733 
    25734 Chain IDs of 36 residues changed 
    25735 ['1', '4'] 
    25736 
    25737 > select #2/Ef
    25738 
    25739 24 atoms, 23 bonds, 4 residues, 1 model selected 
    25740 45 
    25741 46 
    25742 >1 
    25743 > renumber #2/Ef start 46
    25744 
    25745 4 residues renumbered 
    25746 
    25747 > changechains #2/Ef A
    25748 
    25749 Chain IDs of 4 residues changed 
    25750 ['1', '74'] 
    25751 
    25752 > select #2/Eg
    25753 
    25754 577 atoms, 589 bonds, 74 residues, 1 model selected 
    25755 49 
    25756 50 
    25757 >1 
    25758 > renumber #2/Eg start 50
    25759 
    25760 74 residues renumbered 
    25761 
    25762 > changechains #2/Eg A
    25763 
    25764 Chain IDs of 74 residues changed 
    25765 ['3', '18'] 
    25766 
    25767 > select #2/j
    25768 
    25769 160 atoms, 162 bonds, 22 residues, 1 model selected 
    25770 123 
    25771 124 
    25772 >1 
    25773 > renumber #2/j start 124
    25774 
    25775 22 residues renumbered 
    25776 
    25777 > changechains #2/j A
    25778 
    25779 Chain IDs of 22 residues changed 
    25780 
    25781 > renumber #2/Ei:7-9999999 start 8
    25782 
    25783 19 residues renumbered 
    25784 
    25785 > ~bond #2/Ei:6@C #2/Ei:8@N
    25786 
    25787 ['2', '21'] 
    25788 
    25789 > select #2/Ei
    25790 
    25791 187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected 
    25792 145 
    25793 145 
    25794 >0 
    25795 
    25796 > delete #2/Ei:1
    25797 
    25798 > renumber #2/Ei start 146
    25799 
    25800 24 residues renumbered 
    25801 
    25802 > changechains #2/Ei A
    25803 
    25804 Chain IDs of 24 residues changed 
    25805 ['1', '4'] 
    25806 
    25807 > select #2/Bi
    25808 
    25809 23 atoms, 22 bonds, 4 residues, 1 model selected 
    25810 170 
    25811 168 
    25812 >-2 
    25813 
    25814 > delete #2/Bi:3
    25815 
    25816 > delete #2/Bi:2
    25817 
    25818 > delete #2/Bi:1
    25819 
    25820 > renumber #2/Bi start 171
    25821 
    25822 1 residues renumbered 
    25823 
    25824 > changechains #2/Bi A
    25825 
    25826 Chain IDs of 1 residues changed 
    25827 ['1', '3'] 
    25828 
    25829 > select #2/GM
    25830 
    25831 21 atoms, 20 bonds, 3 residues, 1 model selected 
    25832 171 
    25833 171 
    25834 >0 
    25835 
    25836 > delete #2/GM:1
    25837 
    25838 > renumber #2/GM start 172
    25839 
    25840 2 residues renumbered 
    25841 
    25842 > changechains #2/GM A
    25843 
    25844 Chain IDs of 2 residues changed 
    25845 ['2', '81'] 
    25846 
    25847 > select #2/E8
    25848 
    25849 695 atoms, 717 bonds, 86 residues, 1 model selected 
    25850 173 
    25851 174 
    25852 >1 
    25853 > renumber #2/E8 start 174
    25854 
    25855 86 residues renumbered 
    25856 
    25857 > changechains #2/E8 A
    25858 
    25859 Chain IDs of 86 residues changed 
    25860 Renumering chain LtaP32.3800.mRNA_A 
    25861 ['1', '8'] 
    25862 
    25863 > select #2/N
    25864 
    25865 66 atoms, 69 bonds, 8 residues, 1 model selected 
    25866 0 
    25867 34 
    25868 >34 
    25869 > renumber #2/N start 34
    25870 
    25871 8 residues renumbered 
    25872 ['1', '5'] 
    25873 
    25874 > select #2/GZ
    25875 
    25876 35 atoms, 34 bonds, 5 residues, 1 model selected 
    25877 41 
    25878 42 
    25879 >1 
    25880 > renumber #2/GZ start 42
    25881 
    25882 5 residues renumbered 
    25883 
    25884 > changechains #2/GZ N
    25885 
    25886 Chain IDs of 5 residues changed 
    25887 ['14', '47'] 
    25888 
    25889 > select #2/FT
    25890 
    25891 810 atoms, 833 bonds, 101 residues, 1 model selected 
    25892 46 
    25893 47 
    25894 >1 
    25895 > renumber #2/FT start 47
    25896 
    25897 101 residues renumbered 
    25898 
    25899 > changechains #2/FT N
    25900 
    25901 Chain IDs of 101 residues changed 
    25902 Renumering chain LtaP13.0770.mRNA_A 
    25903 ['1', '5'] 
    25904 
    25905 > select #2/4
    25906 
    25907 50 atoms, 51 bonds, 5 residues, 1 model selected 
    25908 0 
    25909 25 
    25910 >25 
    25911 > renumber #2/4 start 25
    25912 
    25913 5 residues renumbered 
    25914 ['1', '3'] 
    25915 
    25916 > select #2/D
    25917 
    25918 20 atoms, 20 bonds, 3 residues, 1 model selected 
    25919 29 
    25920 30 
    25921 >1 
    25922 > renumber #2/D start 30
    25923 
    25924 3 residues renumbered 
    25925 
    25926 > changechains #2/D 4
    25927 
    25928 Chain IDs of 3 residues changed 
    25929 ['1', '1'] 
    25930 
    25931 > select #2/CN
    25932 
    25933 6 atoms, 5 bonds, 1 residue, 1 model selected 
    25934 32 
    25935 33 
    25936 >1 
    25937 > renumber #2/CN start 33
    25938 
    25939 1 residues renumbered 
    25940 
    25941 > changechains #2/CN 4
    25942 
    25943 Chain IDs of 1 residues changed 
    25944 ['1', '7'] 
    25945 
    25946 > select #2/FG
    25947 
    25948 48 atoms, 48 bonds, 7 residues, 1 model selected 
    25949 33 
    25950 34 
    25951 >1 
    25952 > renumber #2/FG start 34
    25953 
    25954 7 residues renumbered 
    25955 
    25956 > changechains #2/FG 4
    25957 
    25958 Chain IDs of 7 residues changed 
    25959 ['1', '14'] 
    25960 
    25961 > select #2/GH
    25962 
    25963 92 atoms, 92 bonds, 14 residues, 1 model selected 
    25964 40 
    25965 57 
    25966 >17 
    25967 > renumber #2/GH start 57
    25968 
    25969 14 residues renumbered 
    25970 
    25971 > changechains #2/GH 4
    25972 
    25973 Chain IDs of 14 residues changed 
    25974 ['1', '5'] 
    25975 
    25976 > select #2/GW
    25977 
    25978 46 atoms, 46 bonds, 5 residues, 1 model selected 
    25979 70 
    25980 71 
    25981 >1 
    25982 > renumber #2/GW start 71
    25983 
    25984 5 residues renumbered 
    25985 
    25986 > changechains #2/GW 4
    25987 
    25988 Chain IDs of 5 residues changed 
    25989 ['1', '4'] 
    25990 
    25991 > select #2/Fj
    25992 
    25993 24 atoms, 23 bonds, 4 residues, 1 model selected 
    25994 75 
    25995 76 
    25996 >1 
    25997 > renumber #2/Fj start 76
    25998 
    25999 4 residues renumbered 
    26000 
    26001 > changechains #2/Fj 4
    26002 
    26003 Chain IDs of 4 residues changed 
    26004 ['1', '7'] 
    26005 
    26006 > select #2/E4
    26007 
    26008 48 atoms, 48 bonds, 7 residues, 1 model selected 
    26009 79 
    26010 80 
    26011 >1 
    26012 > renumber #2/E4 start 80
    26013 
    26014 7 residues renumbered 
    26015 
    26016 > changechains #2/E4 4
    26017 
    26018 Chain IDs of 7 residues changed 
    26019 ['1', '14'] 
    26020 
    26021 > select #2/Er
    26022 
    26023 99 atoms, 102 bonds, 14 residues, 1 model selected 
    26024 86 
    26025 87 
    26026 >1 
    26027 > renumber #2/Er start 87
    26028 
    26029 14 residues renumbered 
    26030 
    26031 > changechains #2/Er 4
    26032 
    26033 Chain IDs of 14 residues changed 
    26034 ['1', '25'] 
    26035 
    26036 > select #2/ER
    26037 
    26038 208 atoms, 211 bonds, 25 residues, 1 model selected 
    26039 100 
    26040 101 
    26041 >1 
    26042 > renumber #2/ER start 101
    26043 
    26044 25 residues renumbered 
    26045 
    26046 > changechains #2/ER 4
    26047 
    26048 Chain IDs of 25 residues changed 
    26049 ['1', '20'] 
    26050 
    26051 > select #2/Fz
    26052 
    26053 146 atoms, 147 bonds, 20 residues, 1 model selected 
    26054 125 
    26055 124 
    26056 >-1 
    26057 
    26058 > delete #2/Fz:2
    26059 
    26060 > delete #2/Fz:1
    26061 
    26062 > renumber #2/Fz start 126
    26063 
    26064 18 residues renumbered 
    26065 
    26066 > changechains #2/Fz 4
    26067 
    26068 Chain IDs of 18 residues changed 
    26069 ['1', '8'] 
    26070 
    26071 > select #2/p
    26072 
    26073 62 atoms, 62 bonds, 8 residues, 1 model selected 
    26074 143 
    26075 144 
    26076 >1 
    26077 > renumber #2/p start 144
    26078 
    26079 8 residues renumbered 
    26080 
    26081 > changechains #2/p 4
    26082 
    26083 Chain IDs of 8 residues changed 
    26084 ['1', '1'] 
    26085 
    26086 > select #2/Dk
    26087 
    26088 8 atoms, 7 bonds, 1 residue, 1 model selected 
    26089 151 
    26090 152 
    26091 >1 
    26092 > renumber #2/Dk start 152
    26093 
    26094 1 residues renumbered 
    26095 
    26096 > changechains #2/Dk 4
    26097 
    26098 Chain IDs of 1 residues changed 
    26099 ['1', '2'] 
    26100 
    26101 > select #2/Bz
    26102 
    26103 16 atoms, 15 bonds, 2 residues, 1 model selected 
    26104 152 
    26105 153 
    26106 >1 
    26107 > renumber #2/Bz start 153
    26108 
    26109 2 residues renumbered 
    26110 
    26111 > changechains #2/Bz 4
    26112 
    26113 Chain IDs of 2 residues changed 
    26114 ['1', '2'] 
    26115 
    26116 > select #2/Br
    26117 
    26118 11 atoms, 10 bonds, 2 residues, 1 model selected 
    26119 154 
    26120 155 
    26121 >1 
    26122 > renumber #2/Br start 155
    26123 
    26124 2 residues renumbered 
    26125 
    26126 > changechains #2/Br 4
    26127 
    26128 Chain IDs of 2 residues changed 
    26129 ['1', '18'] 
    26130 
    26131 > select #2/F6
    26132 
    26133 144 atoms, 146 bonds, 18 residues, 1 model selected 
    26134 156 
    26135 181 
    26136 >25 
    26137 > renumber #2/F6 start 181
    26138 
    26139 18 residues renumbered 
    26140 
    26141 > changechains #2/F6 4
    26142 
    26143 Chain IDs of 18 residues changed 
    26144 ['1', '70'] 
    26145 
    26146 > select #2/q
    26147 
    26148 576 atoms, 590 bonds, 70 residues, 1 model selected 
    26149 198 
    26150 200 
    26151 >2 
    26152 > renumber #2/q start 200
    26153 
    26154 70 residues renumbered 
    26155 
    26156 > changechains #2/q 4
    26157 
    26158 Chain IDs of 70 residues changed 
    26159 ['1', '2'] 
    26160 
    26161 > select #2/Aw
    26162 
    26163 14 atoms, 13 bonds, 2 residues, 1 model selected 
    26164 269 
    26165 270 
    26166 >1 
    26167 > renumber #2/Aw start 270
    26168 
    26169 2 residues renumbered 
    26170 
    26171 > changechains #2/Aw 4
    26172 
    26173 Chain IDs of 2 residues changed 
    26174 ['1', '2'] 
    26175 
    26176 > select #2/X
    26177 
    26178 12 atoms, 11 bonds, 2 residues, 1 model selected 
    26179 271 
    26180 272 
    26181 >1 
    26182 > renumber #2/X start 272
    26183 
    26184 2 residues renumbered 
    26185 
    26186 > changechains #2/X 4
    26187 
    26188 Chain IDs of 2 residues changed 
    26189 ['1', '12'] 
    26190 
    26191 > select #2/Y
    26192 
    26193 92 atoms, 95 bonds, 12 residues, 1 model selected 
    26194 273 
    26195 274 
    26196 >1 
    26197 > renumber #2/Y start 274
    26198 
    26199 12 residues renumbered 
    26200 
    26201 > changechains #2/Y 4
    26202 
    26203 Chain IDs of 12 residues changed 
    26204 ['1', '5'] 
    26205 
    26206 > select #2/9
    26207 
    26208 41 atoms, 42 bonds, 5 residues, 1 model selected 
    26209 285 
    26210 286 
    26211 >1 
    26212 > renumber #2/9 start 286
    26213 
    26214 5 residues renumbered 
    26215 
    26216 > changechains #2/9 4
    26217 
    26218 Chain IDs of 5 residues changed 
    26219 ['1', '14'] 
    26220 
    26221 > select #2/c
    26222 
    26223 112 atoms, 116 bonds, 14 residues, 1 model selected 
    26224 290 
    26225 290 
    26226 >0 
    26227 
    26228 > delete #2/c:1
    26229 
    26230 > renumber #2/c start 291
    26231 
    26232 13 residues renumbered 
    26233 
    26234 > changechains #2/c 4
    26235 
    26236 Chain IDs of 13 residues changed 
    26237 ['1', '3'] 
    26238 
    26239 > select #2/Ge
    26240 
    26241 15 atoms, 14 bonds, 3 residues, 1 model selected 
    26242 303 
    26243 304 
    26244 >1 
    26245 > renumber #2/Ge start 304
    26246 
    26247 3 residues renumbered 
    26248 
    26249 > changechains #2/Ge 4
    26250 
    26251 Chain IDs of 3 residues changed 
    26252 ['1', '2'] 
    26253 
    26254 > select #2/Du
    26255 
    26256 13 atoms, 12 bonds, 2 residues, 1 model selected 
    26257 306 
    26258 309 
    26259 >3 
    26260 > renumber #2/Du start 309
    26261 
    26262 2 residues renumbered 
    26263 
    26264 > changechains #2/Du 4
    26265 
    26266 Chain IDs of 2 residues changed 
    26267 ['1', '3'] 
    26268 
    26269 > select #2/Ad
    26270 
    26271 18 atoms, 18 bonds, 3 residues, 1 model selected 
    26272 310 
    26273 311 
    26274 >1 
    26275 > renumber #2/Ad start 311
    26276 
    26277 3 residues renumbered 
    26278 
    26279 > changechains #2/Ad 4
    26280 
    26281 Chain IDs of 3 residues changed 
    26282 ['1', '7'] 
    26283 
    26284 > select #2/t
    26285 
    26286 50 atoms, 50 bonds, 7 residues, 1 model selected 
    26287 313 
    26288 314 
    26289 >1 
    26290 > renumber #2/t start 314
    26291 
    26292 7 residues renumbered 
    26293 
    26294 > changechains #2/t 4
    26295 
    26296 Chain IDs of 7 residues changed 
    26297 ['1', '32'] 
    26298 
    26299 > select #2/FU
    26300 
    26301 251 atoms, 254 bonds, 32 residues, 1 model selected 
    26302 320 
    26303 321 
    26304 >1 
    26305 > renumber #2/FU start 321
    26306 
    26307 32 residues renumbered 
    26308 
    26309 > changechains #2/FU 4
    26310 
    26311 Chain IDs of 32 residues changed 
    26312 ['1', '1'] 
    26313 
    26314 > select #2/By
    26315 
    26316 11 atoms, 10 bonds, 1 residue, 1 model selected 
    26317 352 
    26318 353 
    26319 >1 
    26320 > renumber #2/By start 353
    26321 
    26322 1 residues renumbered 
    26323 
    26324 > changechains #2/By 4
    26325 
    26326 Chain IDs of 1 residues changed 
    26327 ['1', '2'] 
    26328 
    26329 > select #2/AH
    26330 
    26331 13 atoms, 12 bonds, 2 residues, 1 model selected 
    26332 353 
    26333 354 
    26334 >1 
    26335 > renumber #2/AH start 354
    26336 
    26337 2 residues renumbered 
    26338 
    26339 > changechains #2/AH 4
    26340 
    26341 Chain IDs of 2 residues changed 
    26342 ['9', '18'] 
    26343 
    26344 > select #2/GV
    26345 
    26346 182 atoms, 182 bonds, 24 residues, 1 model selected 
    26347 355 
    26348 356 
    26349 >1 
    26350 > renumber #2/GV start 356
    26351 
    26352 24 residues renumbered 
    26353 
    26354 > changechains #2/GV 4
    26355 
    26356 Chain IDs of 24 residues changed 
    26357 ['1', '1'] 
    26358 
    26359 > select #2/Dq
    26360 
    26361 4 atoms, 3 bonds, 1 residue, 1 model selected 
    26362 379 
    26363 380 
    26364 >1 
    26365 > renumber #2/Dq start 380
    26366 
    26367 1 residues renumbered 
    26368 
    26369 > changechains #2/Dq 4
    26370 
    26371 Chain IDs of 1 residues changed 
    26372 ['1', '4'] 
    26373 
    26374 > select #2/GT
    26375 
    26376 28 atoms, 27 bonds, 4 residues, 1 model selected 
    26377 380 
    26378 381 
    26379 >1 
    26380 > renumber #2/GT start 381
    26381 
    26382 4 residues renumbered 
    26383 
    26384 > changechains #2/GT 4
    26385 
    26386 Chain IDs of 4 residues changed 
    26387 ['1', '2'] 
    26388 
    26389 > select #2/DS
    26390 
    26391 15 atoms, 15 bonds, 2 residues, 1 model selected 
    26392 384 
    26393 387 
    26394 >3 
    26395 > renumber #2/DS start 387
    26396 
    26397 2 residues renumbered 
    26398 
    26399 > changechains #2/DS 4
    26400 
    26401 Chain IDs of 2 residues changed 
    26402 ['1', '10'] 
    26403 
    26404 > select #2/Fp
    26405 
    26406 76 atoms, 78 bonds, 10 residues, 1 model selected 
    26407 388 
    26408 389 
    26409 >1 
    26410 > renumber #2/Fp start 389
    26411 
    26412 10 residues renumbered 
    26413 
    26414 > changechains #2/Fp 4
    26415 
    26416 Chain IDs of 10 residues changed 
    26417 ['1', '5'] 
    26418 
    26419 > select #2/7
    26420 
    26421 37 atoms, 37 bonds, 5 residues, 1 model selected 
    26422 398 
    26423 399 
    26424 >1 
    26425 > renumber #2/7 start 399
    26426 
    26427 5 residues renumbered 
    26428 
    26429 > changechains #2/7 4
    26430 
    26431 Chain IDs of 5 residues changed 
    26432 ['1', '2'] 
    26433 
    26434 > select #2/8
    26435 
    26436 16 atoms, 15 bonds, 2 residues, 1 model selected 
    26437 403 
    26438 404 
    26439 >1 
    26440 > renumber #2/8 start 404
    26441 
    26442 2 residues renumbered 
    26443 
    26444 > changechains #2/8 4
    26445 
    26446 Chain IDs of 2 residues changed 
    26447 ['1', '20'] 
    26448 
    26449 > select #2/FJ
    26450 
    26451 149 atoms, 150 bonds, 20 residues, 1 model selected 
    26452 405 
    26453 407 
    26454 >2 
    26455 > renumber #2/FJ start 407
    26456 
    26457 20 residues renumbered 
    26458 
    26459 > changechains #2/FJ 4
    26460 
    26461 Chain IDs of 20 residues changed 
    26462 ['1', '7'] 
    26463 
    26464 > select #2/Fu
    26465 
    26466 53 atoms, 53 bonds, 7 residues, 1 model selected 
    26467 426 
    26468 426 
    26469 >0 
    26470 
    26471 > delete #2/Fu:1
    26472 
    26473 > renumber #2/Fu start 427
    26474 
    26475 6 residues renumbered 
    26476 
    26477 > changechains #2/Fu 4
    26478 
    26479 Chain IDs of 6 residues changed 
    26480 ['1', '1'] 
    26481 
    26482 > select #2/D6
    26483 
    26484 8 atoms, 7 bonds, 1 residue, 1 model selected 
    26485 432 
    26486 469 
    26487 >37 
    26488 > renumber #2/D6 start 469
    26489 
    26490 1 residues renumbered 
    26491 
    26492 > changechains #2/D6 4
    26493 
    26494 Chain IDs of 1 residues changed 
    26495 ['1', '2'] 
    26496 
    26497 > select #2/Dl
    26498 
    26499 8 atoms, 7 bonds, 2 residues, 1 model selected 
    26500 469 
    26501 470 
    26502 >1 
    26503 > renumber #2/Dl start 470
    26504 
    26505 2 residues renumbered 
    26506 
    26507 > changechains #2/Dl 4
    26508 
    26509 Chain IDs of 2 residues changed 
    26510 ['1', '1'] 
    26511 
    26512 > select #2/DK
    26513 
    26514 9 atoms, 8 bonds, 1 residue, 1 model selected 
    26515 471 
    26516 472 
    26517 >1 
    26518 > renumber #2/DK start 472
    26519 
    26520 1 residues renumbered 
    26521 
    26522 > changechains #2/DK 4
    26523 
    26524 Chain IDs of 1 residues changed 
    26525 ['1', '1'] 
    26526 
    26527 > select #2/Dt
    26528 
    26529 9 atoms, 8 bonds, 1 residue, 1 model selected 
    26530 472 
    26531 473 
    26532 >1 
    26533 > renumber #2/Dt start 473
    26534 
    26535 1 residues renumbered 
    26536 
    26537 > changechains #2/Dt 4
    26538 
    26539 Chain IDs of 1 residues changed 
    26540 ['1', '2'] 
    26541 
    26542 > select #2/C2
    26543 
    26544 10 atoms, 9 bonds, 2 residues, 1 model selected 
    26545 473 
    26546 474 
    26547 >1 
    26548 > renumber #2/C2 start 474
    26549 
    26550 2 residues renumbered 
    26551 
    26552 > changechains #2/C2 4
    26553 
    26554 Chain IDs of 2 residues changed 
    26555 ['1', '3'] 
    26556 
    26557 > select #2/GR
    26558 
    26559 19 atoms, 18 bonds, 3 residues, 1 model selected 
    26560 475 
    26561 476 
    26562 >1 
    26563 > renumber #2/GR start 476
    26564 
    26565 3 residues renumbered 
    26566 
    26567 > changechains #2/GR 4
    26568 
    26569 Chain IDs of 3 residues changed 
    26570 ['1', '12'] 
    26571 
    26572 > select #2/FK
    26573 
    26574 87 atoms, 88 bonds, 12 residues, 1 model selected 
    26575 478 
    26576 511 
    26577 >33 
    26578 > renumber #2/FK start 511
    26579 
    26580 12 residues renumbered 
    26581 
    26582 > changechains #2/FK 4
    26583 
    26584 Chain IDs of 12 residues changed 
    26585 ['1', '3'] 
    26586 
    26587 > select #2/Gb
    26588 
    26589 19 atoms, 18 bonds, 3 residues, 1 model selected 
    26590 522 
    26591 524 
    26592 >2 
    26593 > renumber #2/Gb start 524
    26594 
    26595 3 residues renumbered 
    26596 
    26597 > changechains #2/Gb 4
    26598 
    26599 Chain IDs of 3 residues changed 
    26600 Renumering chain sp|P14548.2|CYB_LEITA_A 
    26601 ['2', '15'] 
    26602 
    26603 > select #2/FI
    26604 
    26605 436 atoms, 446 bonds, 53 residues, 1 model selected 
    26606 0 
    26607 2 
    26608 >2 
    26609 > renumber #2/FI start 2
    26610 
    26611 53 residues renumbered 
    26612 ['1', '1'] 
    26613 
    26614 > select #2/BA
    26615 
    26616 11 atoms, 11 bonds, 1 residue, 1 model selected 
    26617 54 
    26618 55 
    26619 >1 
    26620 > renumber #2/BA start 55
    26621 
    26622 1 residues renumbered 
    26623 
    26624 > changechains #2/BA FI
    26625 
    26626 Chain IDs of 1 residues changed 
    26627 ['1', '1'] 
    26628 
    26629 > select #2/B9
    26630 
    26631 5 atoms, 4 bonds, 1 residue, 1 model selected 
    26632 55 
    26633 56 
    26634 >1 
    26635 > renumber #2/B9 start 56
    26636 
    26637 1 residues renumbered 
    26638 
    26639 > changechains #2/B9 FI
    26640 
    26641 Chain IDs of 1 residues changed 
    26642 ['1', '153'] 
    26643 
    26644 > select #2/Ej
    26645 
    26646 1293 atoms, 1333 bonds, 153 residues, 1 model selected 
    26647 56 
    26648 57 
    26649 >1 
    26650 > renumber #2/Ej start 57
    26651 
    26652 153 residues renumbered 
    26653 
    26654 > changechains #2/Ej FI
    26655 
    26656 Chain IDs of 153 residues changed 
    26657 ['1', '1'] 
    26658 
    26659 > select #2/AC
    26660 
    26661 12 atoms, 12 bonds, 1 residue, 1 model selected 
    26662 209 
    26663 210 
    26664 >1 
    26665 > renumber #2/AC start 210
    26666 
    26667 1 residues renumbered 
    26668 
    26669 > changechains #2/AC FI
    26670 
    26671 Chain IDs of 1 residues changed 
    26672 ['1', '39'] 
    26673 
    26674 > select #2/k
    26675 
    26676 358 atoms, 372 bonds, 39 residues, 1 model selected 
    26677 210 
    26678 211 
    26679 >1 
    26680 > renumber #2/k start 211
    26681 
    26682 39 residues renumbered 
    26683 
    26684 > changechains #2/k FI
    26685 
    26686 Chain IDs of 39 residues changed 
    26687 ['1', '27'] 
    26688 
    26689 > select #2/Fn
    26690 
    26691 200 atoms, 203 bonds, 27 residues, 1 model selected 
    26692 249 
    26693 250 
    26694 >1 
    26695 > renumber #2/Fn start 250
    26696 
    26697 27 residues renumbered 
    26698 
    26699 > changechains #2/Fn FI
    26700 
    26701 Chain IDs of 27 residues changed 
    26702 ['1', '37'] 
    26703 
    26704 > select #2/o
    26705 
    26706 318 atoms, 331 bonds, 37 residues, 1 model selected 
    26707 276 
    26708 276 
    26709 >0 
    26710 
    26711 > delete #2/o:1
    26712 
    26713 > renumber #2/o start 277
    26714 
    26715 36 residues renumbered 
    26716 
    26717 > changechains #2/o FI
    26718 
    26719 Chain IDs of 36 residues changed 
    26720 ['1', '2'] 
    26721 
    26722 > select #2/AE
    26723 
    26724 22 atoms, 23 bonds, 2 residues, 1 model selected 
    26725 312 
    26726 313 
    26727 >1 
    26728 > renumber #2/AE start 313
    26729 
    26730 2 residues renumbered 
    26731 
    26732 > changechains #2/AE FI
    26733 
    26734 Chain IDs of 2 residues changed 
    26735 ['1', '1'] 
    26736 
    26737 > select #2/C8
    26738 
    26739 7 atoms, 7 bonds, 1 residue, 1 model selected 
    26740 314 
    26741 318 
    26742 >4 
    26743 > renumber #2/C8 start 318
    26744 
    26745 1 residues renumbered 
    26746 
    26747 > changechains #2/C8 FI
    26748 
    26749 Chain IDs of 1 residues changed 
    26750 ['1', '1'] 
    26751 
    26752 > select #2/Bo
    26753 
    26754 14 atoms, 15 bonds, 1 residue, 1 model selected 
    26755 318 
    26756 319 
    26757 >1 
    26758 > renumber #2/Bo start 319
    26759 
    26760 1 residues renumbered 
    26761 
    26762 > changechains #2/Bo FI
    26763 
    26764 Chain IDs of 1 residues changed 
    26765 ['1', '56'] 
    26766 
    26767 > select #2/Ep
    26768 
    26769 472 atoms, 486 bonds, 56 residues, 1 model selected 
    26770 319 
    26771 320 
    26772 >1 
    26773 > renumber #2/Ep start 320
    26774 
    26775 56 residues renumbered 
    26776 
    26777 > changechains #2/Ep FI
    26778 
    26779 Chain IDs of 56 residues changed 
    26780 Renumering chain LtaP35.0210.mRNA_A 
    26781 ['1', '9'] 
    26782 
    26783 > select #2/GU
    26784 
    26785 72 atoms, 72 bonds, 9 residues, 1 model selected 
    26786 0 
    26787 1 
    26788 >1 
    26789 > renumber #2/GU start 1
    26790 
    26791 0 residues renumbered 
    26792 ['1', '4'] 
    26793 
    26794 > select #2/FE
    26795 
    26796 28 atoms, 28 bonds, 4 residues, 1 model selected 
    26797 9 
    26798 10 
    26799 >1 
    26800 > renumber #2/FE start 10
    26801 
    26802 4 residues renumbered 
    26803 
    26804 > changechains #2/FE GU
    26805 
    26806 Chain IDs of 4 residues changed 
    26807 ['1', '2'] 
    26808 
    26809 > select #2/Az
    26810 
    26811 12 atoms, 11 bonds, 2 residues, 1 model selected 
    26812 13 
    26813 14 
    26814 >1 
    26815 > renumber #2/Az start 14
    26816 
    26817 2 residues renumbered 
    26818 
    26819 > changechains #2/Az GU
    26820 
    26821 Chain IDs of 2 residues changed 
    26822 ['1', '3'] 
    26823 
    26824 > select #2/J
    26825 
    26826 21 atoms, 20 bonds, 3 residues, 1 model selected 
    26827 15 
    26828 16 
    26829 >1 
    26830 > renumber #2/J start 16
    26831 
    26832 3 residues renumbered 
    26833 
    26834 > changechains #2/J GU
    26835 
    26836 Chain IDs of 3 residues changed 
    26837 ['1', '2'] 
    26838 
    26839 > select #2/AK
    26840 
    26841 12 atoms, 11 bonds, 2 residues, 1 model selected 
    26842 18 
    26843 19 
    26844 >1 
    26845 > renumber #2/AK start 19
    26846 
    26847 2 residues renumbered 
    26848 
    26849 > changechains #2/AK GU
    26850 
    26851 Chain IDs of 2 residues changed 
    26852 ['1', '10'] 
    26853 
    26854 > select #2/h
    26855 
    26856 86 atoms, 88 bonds, 10 residues, 1 model selected 
    26857 20 
    26858 21 
    26859 >1 
    26860 > renumber #2/h start 21
    26861 
    26862 10 residues renumbered 
    26863 
    26864 > changechains #2/h GU
    26865 
    26866 Chain IDs of 10 residues changed 
    26867 ['1', '4'] 
    26868 
    26869 > select #2/i
    26870 
    26871 44 atoms, 46 bonds, 4 residues, 1 model selected 
    26872 30 
    26873 31 
    26874 >1 
    26875 > renumber #2/i start 31
    26876 
    26877 4 residues renumbered 
    26878 
    26879 > changechains #2/i GU
    26880 
    26881 Chain IDs of 4 residues changed 
    26882 ['1', '1'] 
    26883 
    26884 > select #2/Cw
    26885 
    26886 8 atoms, 7 bonds, 1 residue, 1 model selected 
    26887 34 
    26888 35 
    26889 >1 
    26890 > renumber #2/Cw start 35
    26891 
    26892 1 residues renumbered 
    26893 
    26894 > changechains #2/Cw GU
    26895 
    26896 Chain IDs of 1 residues changed 
    26897 ['1', '2'] 
    26898 
    26899 > select #2/As
    26900 
    26901 16 atoms, 16 bonds, 2 residues, 1 model selected 
    26902 35 
    26903 36 
    26904 >1 
    26905 > renumber #2/As start 36
    26906 
    26907 2 residues renumbered 
    26908 
    26909 > changechains #2/As GU
    26910 
    26911 Chain IDs of 2 residues changed 
    26912 ['1', '30'] 
    26913 
    26914 > select #2/r
    26915 
    26916 242 atoms, 242 bonds, 30 residues, 1 model selected 
    26917 37 
    26918 38 
    26919 >1 
    26920 > renumber #2/r start 38
    26921 
    26922 30 residues renumbered 
    26923 
    26924 > changechains #2/r GU
    26925 
    26926 Chain IDs of 30 residues changed 
    26927 ['3', '45'] 
    26928 
    26929 > select #2/E5
    26930 
    26931 401 atoms, 418 bonds, 48 residues, 1 model selected 
    26932 67 
    26933 68 
    26934 >1 
    26935 > renumber #2/E5 start 68
    26936 
    26937 48 residues renumbered 
    26938 
    26939 > changechains #2/E5 GU
    26940 
    26941 Chain IDs of 48 residues changed 
    26942 ['1', '9'] 
    26943 
    26944 > select #2/l
    26945 
    26946 68 atoms, 68 bonds, 9 residues, 1 model selected 
    26947 115 
    26948 116 
    26949 >1 
    26950 > renumber #2/l start 116
    26951 
    26952 9 residues renumbered 
    26953 
    26954 > changechains #2/l GU
    26955 
    26956 Chain IDs of 9 residues changed 
    26957 ['1', '2'] 
    26958 
    26959 > select #2/BD
    26960 
    26961 11 atoms, 10 bonds, 2 residues, 1 model selected 
    26962 124 
    26963 125 
    26964 >1 
    26965 > renumber #2/BD start 125
    26966 
    26967 2 residues renumbered 
    26968 
    26969 > changechains #2/BD GU
    26970 
    26971 Chain IDs of 2 residues changed 
    26972 ['1', '59'] 
    26973 
    26974 > select #2/Em
    26975 
    26976 552 atoms, 567 bonds, 65 residues, 1 model selected 
    26977 126 
    26978 127 
    26979 >1 
    26980 > renumber #2/Em start 127
    26981 
    26982 65 residues renumbered 
    26983 
    26984 > changechains #2/Em GU
    26985 
    26986 Chain IDs of 65 residues changed 
    26987 ['1', '13'] 
    26988 
    26989 > select #2/FW
    26990 
    26991 101 atoms, 104 bonds, 13 residues, 1 model selected 
    26992 191 
    26993 191 
    26994 >0 
    26995 
    26996 > delete #2/FW:1
    26997 
    26998 > renumber #2/FW start 192
    26999 
    27000 12 residues renumbered 
    27001 
    27002 > changechains #2/FW GU
    27003 
    27004 Chain IDs of 12 residues changed 
    27005 Renumering chain GET91263.1_A 
    27006 ['1', '34'] 
    27007 
    27008 > select #2/FL
    27009 
    27010 257 atoms, 261 bonds, 34 residues, 1 model selected 
    27011 0 
    27012 4 
    27013 >4 
    27014 > renumber #2/FL start 4
    27015 
    27016 34 residues renumbered 
    27017 ['1', '5'] 
    27018 
    27019 > select #2/FP
    27020 
    27021 31 atoms, 31 bonds, 5 residues, 1 model selected 
    27022 37 
    27023 39 
    27024 >2 
    27025 > renumber #2/FP start 39
    27026 
    27027 5 residues renumbered 
    27028 
    27029 > changechains #2/FP FL
    27030 
    27031 Chain IDs of 5 residues changed 
    27032 ['3', '25'] 
    27033 
    27034 > select #2/1
    27035 
    27036 220 atoms, 226 bonds, 26 residues, 1 model selected 
    27037 43 
    27038 45 
    27039 >2 
    27040 > renumber #2/1 start 45
    27041 
    27042 26 residues renumbered 
    27043 
    27044 > changechains #2/1 FL
    27045 
    27046 Chain IDs of 26 residues changed 
    27047 Renumering chain LtaP35.0250.mRNA_A 
    27048 ['1', '4'] 
    27049 
    27050 > select #2/GA
    27051 
    27052 26 atoms, 27 bonds, 4 residues, 1 model selected 
    27053 0 
    27054 13 
    27055 >13 
    27056 > renumber #2/GA start 13
    27057 
    27058 4 residues renumbered 
    27059 ['1', '3'] 
    27060 
    27061 > select #2/a
    27062 
    27063 19 atoms, 18 bonds, 3 residues, 1 model selected 
    27064 16 
    27065 17 
    27066 >1 
    27067 > renumber #2/a start 17
    27068 
    27069 3 residues renumbered 
    27070 
    27071 > changechains #2/a GA
    27072 
    27073 Chain IDs of 3 residues changed 
    27074 ['6', '20'] 
    27075 
    27076 > select #2/EQ
    27077 
    27078 192 atoms, 194 bonds, 24 residues, 1 model selected 
    27079 19 
    27080 20 
    27081 >1 
    27082 > renumber #2/EQ start 20
    27083 
    27084 24 residues renumbered 
    27085 
    27086 > changechains #2/EQ GA
    27087 
    27088 Chain IDs of 24 residues changed 
    27089 ['1', '11'] 
    27090 
    27091 > select #2/En
    27092 
    27093 90 atoms, 92 bonds, 11 residues, 1 model selected 
    27094 43 
    27095 45 
    27096 >2 
    27097 > renumber #2/En start 45
    27098 
    27099 11 residues renumbered 
    27100 
    27101 > changechains #2/En GA
    27102 
    27103 Chain IDs of 11 residues changed 
    27104 ['3', '39'] 
    27105 
    27106 > select #2/m
    27107 
    27108 342 atoms, 353 bonds, 39 residues, 1 model selected 
    27109 55 
    27110 57 
    27111 >2 
    27112 > renumber #2/m start 57
    27113 
    27114 39 residues renumbered 
    27115 
    27116 > changechains #2/m GA
    27117 
    27118 Chain IDs of 39 residues changed 
    27119 ['1', '27'] 
    27120 
    27121 > select #2/Eo
    27122 
    27123 229 atoms, 235 bonds, 27 residues, 1 model selected 
    27124 95 
    27125 96 
    27126 >1 
    27127 > renumber #2/Eo start 96
    27128 
    27129 27 residues renumbered 
    27130 
    27131 > changechains #2/Eo GA
    27132 
    27133 Chain IDs of 27 residues changed 
    27134 Renumering chain GET89654.1_A 
    27135 ['1', '21'] 
    27136 
    27137 > select #2/GQ
    27138 
    27139 149 atoms, 153 bonds, 21 residues, 1 model selected 
    27140 0 
    27141 13 
    27142 >13 
    27143 > renumber #2/GQ start 13
    27144 
    27145 21 residues renumbered 
    27146 ['1', '1'] 
    27147 
    27148 > select #2/B2
    27149 
    27150 11 atoms, 11 bonds, 1 residue, 1 model selected 
    27151 33 
    27152 34 
    27153 >1 
    27154 > renumber #2/B2 start 34
    27155 
    27156 1 residues renumbered 
    27157 
    27158 > changechains #2/B2 GQ
    27159 
    27160 Chain IDs of 1 residues changed 
    27161 ['1', '4'] 
    27162 
    27163 > select #2/AB
    27164 
    27165 32 atoms, 32 bonds, 4 residues, 1 model selected 
    27166 34 
    27167 35 
    27168 >1 
    27169 > renumber #2/AB start 35
    27170 
    27171 4 residues renumbered 
    27172 
    27173 > changechains #2/AB GQ
    27174 
    27175 Chain IDs of 4 residues changed 
    27176 ['2', '33'] 
    27177 
    27178 > select #2/FM
    27179 
    27180 254 atoms, 256 bonds, 33 residues, 1 model selected 
    27181 38 
    27182 39 
    27183 >1 
    27184 > renumber #2/FM start 39
    27185 
    27186 33 residues renumbered 
    27187 
    27188 > changechains #2/FM GQ
    27189 
    27190 Chain IDs of 33 residues changed 
    27191 ['1', '1'] 
    27192 
    27193 > select #2/CP
    27194 
    27195 8 atoms, 7 bonds, 1 residue, 1 model selected 
    27196 71 
    27197 72 
    27198 >1 
    27199 > renumber #2/CP start 72
    27200 
    27201 1 residues renumbered 
    27202 
    27203 > changechains #2/CP GQ
    27204 
    27205 Chain IDs of 1 residues changed 
    27206 ['1', '1'] 
    27207 
    27208 > select #2/BG
    27209 
    27210 4 atoms, 3 bonds, 1 residue, 1 model selected 
    27211 72 
    27212 73 
    27213 >1 
    27214 > renumber #2/BG start 73
    27215 
    27216 1 residues renumbered 
    27217 
    27218 > changechains #2/BG GQ
    27219 
    27220 Chain IDs of 1 residues changed 
    27221 ['1', '2'] 
    27222 
    27223 > select #2/A8
    27224 
    27225 15 atoms, 15 bonds, 2 residues, 1 model selected 
    27226 73 
    27227 74 
    27228 >1 
    27229 > renumber #2/A8 start 74
    27230 
    27231 2 residues renumbered 
    27232 
    27233 > changechains #2/A8 GQ
    27234 
    27235 Chain IDs of 2 residues changed 
    27236 ['1', '1'] 
    27237 
    27238 > select #2/B0
    27239 
    27240 4 atoms, 3 bonds, 1 residue, 1 model selected 
    27241 75 
    27242 76 
    27243 >1 
    27244 > renumber #2/B0 start 76
    27245 
    27246 1 residues renumbered 
    27247 
    27248 > changechains #2/B0 GQ
    27249 
    27250 Chain IDs of 1 residues changed 
    27251 ['1', '1'] 
    27252 
    27253 > select #2/C1
    27254 
    27255 5 atoms, 4 bonds, 1 residue, 1 model selected 
    27256 76 
    27257 77 
    27258 >1 
    27259 > renumber #2/C1 start 77
    27260 
    27261 1 residues renumbered 
    27262 
    27263 > changechains #2/C1 GQ
    27264 
    27265 Chain IDs of 1 residues changed 
    27266 ['1', '8'] 
    27267 
    27268 > select #2/GN
    27269 
    27270 58 atoms, 58 bonds, 8 residues, 1 model selected 
    27271 77 
    27272 78 
    27273 >1 
    27274 > renumber #2/GN start 78
    27275 
    27276 8 residues renumbered 
    27277 
    27278 > changechains #2/GN GQ
    27279 
    27280 Chain IDs of 8 residues changed 
    27281 
    27282 > delete #2/FN:35
    27283 
    27284 > renumber #2/FN:36-69 start 45
    27285 
    27286 34 residues renumbered 
    27287 
    27288 > renumber #2/FN start 435
    27289 
    27290 68 residues renumbered 
    27291 
    27292 > delete #2/FN:505
    27293 
    27294 > delete #2/FN:508
    27295 
    27296 > renumber #2/FN:479-512 start 479 relative false
    27297 
    27298 6 residues renumbered 
    27299 
    27300 > changechains #2/FN 4
    27301 
    27302 Chain IDs of 66 residues changed 
    27303 
    27304 > save "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
    27305 > rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
    27306 > Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ_renamedRenumbered.cif"
    27307 > models #2
    27308 
    27309 Not saving entity_poly_seq for non-authoritative sequences 
    27310 
    27311 > runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
    27312 > Personal/GitHub/KRSPs/modelangeloScripts/mutateForMultipleChains.py #2
    27313 > alignmentsMod1Mod.txt
    27314 
    27315 > combine #2 close false name mutadedModel
    27316 
    27317 > color #3 gray
    27318 
    27319 > select #3/GC
    27320 
    27321 1183 atoms, 1196 bonds, 156 residues, 1 model selected 
    27322 
    27323 > bond #3/GC:92@C #3/GC:93@N reasonable false
    27324 
    27325 Created 0 bonds 
    27326 
    27327 > bond #3/GC:93@C #3/GC:94@N reasonable false
    27328 
    27329 Created 0 bonds 
    27330 
    27331 > bond #3/GC:94@C #3/GC:95@N reasonable false
    27332 
    27333 Created 0 bonds 
    27334 
    27335 > bond #3/GC:95@C #3/GC:96@N reasonable false
    27336 
    27337 Created 0 bonds 
    27338 
    27339 > bond #3/GC:96@C #3/GC:97@N reasonable false
    27340 
    27341 Created 0 bonds 
    27342 
    27343 > bond #3/GC:97@C #3/GC:98@N reasonable false
    27344 
    27345 Created 0 bonds 
    27346 
    27347 > bond #3/GC:98@C #3/GC:99@N reasonable false
    27348 
    27349 Created 0 bonds 
    27350 
    27351 > bond #3/GC:99@C #3/GC:100@N reasonable false
    27352 
    27353 Created 0 bonds 
    27354 
    27355 > bond #3/GC:100@C #3/GC:101@N reasonable false
    27356 
    27357 Created 0 bonds 
    27358 
    27359 > bond #3/GC:101@C #3/GC:102@N reasonable false
    27360 
    27361 Created 0 bonds 
    27362 
    27363 > bond #3/GC:102@C #3/GC:103@N reasonable false
    27364 
    27365 Created 0 bonds 
    27366 
    27367 > bond #3/GC:103@C #3/GC:104@N reasonable false
    27368 
    27369 Created 0 bonds 
    27370 
    27371 > bond #3/GC:104@C #3/GC:105@N reasonable false
    27372 
    27373 Created 0 bonds 
    27374 
    27375 > bond #3/GC:105@C #3/GC:106@N reasonable false
    27376 
    27377 Created 0 bonds 
    27378 
    27379 > bond #3/GC:106@C #3/GC:107@N reasonable false
    27380 
    27381 Created 1 bond 
    27382 
    27383 > bond #3/GC:107@C #3/GC:108@N reasonable false
    27384 
    27385 Created 0 bonds 
    27386 
    27387 > bond #3/GC:108@C #3/GC:109@N reasonable false
    27388 
    27389 Created 0 bonds 
    27390 
    27391 > bond #3/GC:109@C #3/GC:110@N reasonable false
    27392 
    27393 Created 0 bonds 
    27394 
    27395 > bond #3/GC:110@C #3/GC:111@N reasonable false
    27396 
    27397 Created 0 bonds 
    27398 
    27399 > bond #3/GC:111@C #3/GC:112@N reasonable false
    27400 
    27401 Created 0 bonds 
    27402 
    27403 > bond #3/GC:112@C #3/GC:113@N reasonable false
    27404 
    27405 Created 0 bonds 
    27406 
    27407 > bond #3/GC:113@C #3/GC:114@N reasonable false
    27408 
    27409 Created 0 bonds 
    27410 
    27411 > bond #3/GC:114@C #3/GC:115@N reasonable false
    27412 
    27413 Created 0 bonds 
    27414 
    27415 > bond #3/GC:115@C #3/GC:116@N reasonable false
    27416 
    27417 Created 0 bonds 
    27418 
    27419 > bond #3/GC:116@C #3/GC:117@N reasonable false
    27420 
    27421 Created 0 bonds 
    27422 
    27423 > bond #3/GC:117@C #3/GC:118@N reasonable false
    27424 
    27425 Created 0 bonds 
    27426 
    27427 > bond #3/GC:118@C #3/GC:119@N reasonable false
    27428 
    27429 Created 0 bonds 
    27430 
    27431 > bond #3/GC:119@C #3/GC:120@N reasonable false
    27432 
    27433 Created 0 bonds 
    27434 
    27435 > bond #3/GC:120@C #3/GC:121@N reasonable false
    27436 
    27437 Created 0 bonds 
    27438 
    27439 > bond #3/GC:121@C #3/GC:122@N reasonable false
    27440 
    27441 Created 0 bonds 
    27442 
    27443 > bond #3/GC:122@C #3/GC:123@N reasonable false
    27444 
    27445 Created 0 bonds 
    27446 
    27447 > bond #3/GC:123@C #3/GC:124@N reasonable false
    27448 
    27449 Created 0 bonds 
    27450 
    27451 > bond #3/GC:124@C #3/GC:125@N reasonable false
    27452 
    27453 Created 0 bonds 
    27454 
    27455 > bond #3/GC:125@C #3/GC:126@N reasonable false
    27456 
    27457 Created 0 bonds 
    27458 
    27459 > bond #3/GC:126@C #3/GC:127@N reasonable false
    27460 
    27461 Created 0 bonds 
    27462 
    27463 > bond #3/GC:127@C #3/GC:128@N reasonable false
    27464 
    27465 Created 0 bonds 
    27466 
    27467 > bond #3/GC:128@C #3/GC:129@N reasonable false
    27468 
    27469 Created 1 bond 
    27470 
    27471 > bond #3/GC:27@C #3/GC:28@N reasonable false
    27472 
    27473 Created 0 bonds 
    27474 
    27475 > bond #3/GC:28@C #3/GC:29@N reasonable false
    27476 
    27477 Created 0 bonds 
    27478 
    27479 > bond #3/GC:29@C #3/GC:30@N reasonable false
    27480 
    27481 Created 1 bond 
    27482 
    27483 > bond #3/GC:30@C #3/GC:31@N reasonable false
    27484 
    27485 Created 1 bond 
    27486 
    27487 > bond #3/GC:25@C #3/GC:26@N reasonable false
    27488 
    27489 Created 1 bond 
    27490 
    27491 > bond #3/GC:26@C #3/GC:27@N reasonable false
    27492 
    27493 Created 1 bond 
    27494 
    27495 > bond #3/GC:50@C #3/GC:51@N reasonable false
    27496 
    27497 Created 1 bond 
    27498 
    27499 > bond #3/GC:51@C #3/GC:52@N reasonable false
    27500 
    27501 Created 0 bonds 
    27502 
    27503 > bond #3/GC:52@C #3/GC:53@N reasonable false
    27504 
    27505 Created 0 bonds 
    27506 
    27507 > bond #3/GC:53@C #3/GC:54@N reasonable false
    27508 
    27509 Created 0 bonds 
    27510 
    27511 > bond #3/GC:54@C #3/GC:55@N reasonable false
    27512 
    27513 Created 0 bonds 
    27514 
    27515 > bond #3/GC:55@C #3/GC:56@N reasonable false
    27516 
    27517 Created 0 bonds 
    27518 
    27519 > bond #3/GC:56@C #3/GC:57@N reasonable false
    27520 
    27521 Created 0 bonds 
    27522 
    27523 > bond #3/GC:57@C #3/GC:58@N reasonable false
    27524 
    27525 Created 0 bonds 
    27526 
    27527 > bond #3/GC:58@C #3/GC:59@N reasonable false
    27528 
    27529 Created 0 bonds 
    27530 
    27531 > bond #3/GC:59@C #3/GC:60@N reasonable false
    27532 
    27533 Created 1 bond 
    27534 
    27535 > bond #3/GC:129@C #3/GC:130@N reasonable false
    27536 
    27537 Created 0 bonds 
    27538 
    27539 > bond #3/GC:130@C #3/GC:131@N reasonable false
    27540 
    27541 Created 0 bonds 
    27542 
    27543 > bond #3/GC:131@C #3/GC:132@N reasonable false
    27544 
    27545 Created 0 bonds 
    27546 
    27547 > bond #3/GC:132@C #3/GC:133@N reasonable false
    27548 
    27549 Created 0 bonds 
    27550 
    27551 > bond #3/GC:133@C #3/GC:134@N reasonable false
    27552 
    27553 Created 0 bonds 
    27554 
    27555 > bond #3/GC:134@C #3/GC:135@N reasonable false
    27556 
    27557 Created 0 bonds 
    27558 
    27559 > bond #3/GC:135@C #3/GC:136@N reasonable false
    27560 
    27561 Created 0 bonds 
    27562 
    27563 > bond #3/GC:136@C #3/GC:137@N reasonable false
    27564 
    27565 Created 0 bonds 
    27566 
    27567 > bond #3/GC:137@C #3/GC:138@N reasonable false
    27568 
    27569 Created 0 bonds 
    27570 
    27571 > bond #3/GC:138@C #3/GC:139@N reasonable false
    27572 
    27573 Created 0 bonds 
    27574 
    27575 > bond #3/GC:139@C #3/GC:140@N reasonable false
    27576 
    27577 Created 0 bonds 
    27578 
    27579 > bond #3/GC:140@C #3/GC:141@N reasonable false
    27580 
    27581 Created 0 bonds 
    27582 
    27583 > bond #3/GC:141@C #3/GC:142@N reasonable false
    27584 
    27585 Created 0 bonds 
    27586 
    27587 > bond #3/GC:142@C #3/GC:143@N reasonable false
    27588 
    27589 Created 0 bonds 
    27590 
    27591 > bond #3/GC:143@C #3/GC:144@N reasonable false
    27592 
    27593 Created 0 bonds 
    27594 
    27595 > bond #3/GC:144@C #3/GC:145@N reasonable false
    27596 
    27597 Created 0 bonds 
    27598 
    27599 > bond #3/GC:145@C #3/GC:146@N reasonable false
    27600 
    27601 Created 0 bonds 
    27602 
    27603 > bond #3/GC:146@C #3/GC:147@N reasonable false
    27604 
    27605 Created 0 bonds 
    27606 
    27607 > bond #3/GC:147@C #3/GC:148@N reasonable false
    27608 
    27609 Created 0 bonds 
    27610 
    27611 > bond #3/GC:148@C #3/GC:149@N reasonable false
    27612 
    27613 Created 0 bonds 
    27614 
    27615 > bond #3/GC:149@C #3/GC:150@N reasonable false
    27616 
    27617 Created 0 bonds 
    27618 
    27619 > bond #3/GC:150@C #3/GC:151@N reasonable false
    27620 
    27621 Created 0 bonds 
    27622 
    27623 > bond #3/GC:151@C #3/GC:152@N reasonable false
    27624 
    27625 Created 0 bonds 
    27626 
    27627 > bond #3/GC:152@C #3/GC:153@N reasonable false
    27628 
    27629 Created 0 bonds 
    27630 
    27631 > bond #3/GC:153@C #3/GC:154@N reasonable false
    27632 
    27633 Created 0 bonds 
    27634 
    27635 > bond #3/GC:154@C #3/GC:155@N reasonable false
    27636 
    27637 Created 0 bonds 
    27638 
    27639 > bond #3/GC:155@C #3/GC:156@N reasonable false
    27640 
    27641 Created 0 bonds 
    27642 
    27643 > bond #3/GC:156@C #3/GC:157@N reasonable false
    27644 
    27645 Created 0 bonds 
    27646 
    27647 > bond #3/GC:157@C #3/GC:158@N reasonable false
    27648 
    27649 Created 0 bonds 
    27650 
    27651 > bond #3/GC:158@C #3/GC:159@N reasonable false
    27652 
    27653 Created 0 bonds 
    27654 
    27655 > bond #3/GC:159@C #3/GC:160@N reasonable false
    27656 
    27657 Created 0 bonds 
    27658 
    27659 > bond #3/GC:160@C #3/GC:161@N reasonable false
    27660 
    27661 Created 0 bonds 
    27662 
    27663 > bond #3/GC:161@C #3/GC:162@N reasonable false
    27664 
    27665 Created 0 bonds 
    27666 
    27667 > bond #3/GC:162@C #3/GC:163@N reasonable false
    27668 
    27669 Created 0 bonds 
    27670 
    27671 > bond #3/GC:163@C #3/GC:164@N reasonable false
    27672 
    27673 Created 0 bonds 
    27674 
    27675 > bond #3/GC:164@C #3/GC:165@N reasonable false
    27676 
    27677 Created 0 bonds 
    27678 
    27679 > bond #3/GC:165@C #3/GC:166@N reasonable false
    27680 
    27681 Created 0 bonds 
    27682 
    27683 > bond #3/GC:166@C #3/GC:167@N reasonable false
    27684 
    27685 Created 0 bonds 
    27686 
    27687 > bond #3/GC:167@C #3/GC:168@N reasonable false
    27688 
    27689 Created 0 bonds 
    27690 
    27691 > bond #3/GC:168@C #3/GC:169@N reasonable false
    27692 
    27693 Created 0 bonds 
    27694 
    27695 > bond #3/GC:169@C #3/GC:170@N reasonable false
    27696 
    27697 Created 0 bonds 
    27698 
    27699 > bond #3/GC:170@C #3/GC:171@N reasonable false
    27700 
    27701 Created 0 bonds 
    27702 
    27703 > bond #3/GC:171@C #3/GC:172@N reasonable false
    27704 
    27705 Created 0 bonds 
    27706 
    27707 > bond #3/GC:64@C #3/GC:65@N reasonable false
    27708 
    27709 Created 0 bonds 
    27710 
    27711 > bond #3/GC:65@C #3/GC:66@N reasonable false
    27712 
    27713 Created 0 bonds 
    27714 
    27715 > bond #3/GC:66@C #3/GC:67@N reasonable false
    27716 
    27717 Created 0 bonds 
    27718 
    27719 > bond #3/GC:67@C #3/GC:68@N reasonable false
    27720 
    27721 Created 0 bonds 
    27722 
    27723 > bond #3/GC:68@C #3/GC:69@N reasonable false
    27724 
    27725 Created 0 bonds 
    27726 
    27727 > bond #3/GC:69@C #3/GC:70@N reasonable false
    27728 
    27729 Created 0 bonds 
    27730 
    27731 > bond #3/GC:70@C #3/GC:71@N reasonable false
    27732 
    27733 Created 0 bonds 
    27734 
    27735 > bond #3/GC:71@C #3/GC:72@N reasonable false
    27736 
    27737 Created 0 bonds 
    27738 
    27739 > bond #3/GC:72@C #3/GC:73@N reasonable false
    27740 
    27741 Created 0 bonds 
    27742 
    27743 > bond #3/GC:73@C #3/GC:74@N reasonable false
    27744 
    27745 Created 0 bonds 
    27746 
    27747 > bond #3/GC:74@C #3/GC:75@N reasonable false
    27748 
    27749 Created 0 bonds 
    27750 
    27751 > bond #3/GC:75@C #3/GC:76@N reasonable false
    27752 
    27753 Created 0 bonds 
    27754 
    27755 > bond #3/GC:76@C #3/GC:77@N reasonable false
    27756 
    27757 Created 0 bonds 
    27758 
    27759 > bond #3/GC:77@C #3/GC:78@N reasonable false
    27760 
    27761 Created 0 bonds 
    27762 
    27763 > bond #3/GC:78@C #3/GC:79@N reasonable false
    27764 
    27765 Created 0 bonds 
    27766 
    27767 > bond #3/GC:79@C #3/GC:80@N reasonable false
    27768 
    27769 Created 0 bonds 
    27770 
    27771 > bond #3/GC:80@C #3/GC:81@N reasonable false
    27772 
    27773 Created 0 bonds 
    27774 
    27775 > bond #3/GC:81@C #3/GC:82@N reasonable false
    27776 
    27777 Created 0 bonds 
    27778 
    27779 > bond #3/GC:82@C #3/GC:83@N reasonable false
    27780 
    27781 Created 0 bonds 
    27782 
    27783 > bond #3/GC:83@C #3/GC:84@N reasonable false
    27784 
    27785 Created 0 bonds 
    27786 
    27787 > bond #3/GC:84@C #3/GC:85@N reasonable false
    27788 
    27789 Created 0 bonds 
    27790 
    27791 > bond #3/GC:85@C #3/GC:86@N reasonable false
    27792 
    27793 Created 0 bonds 
    27794 
    27795 > bond #3/GC:86@C #3/GC:87@N reasonable false
    27796 
    27797 Created 0 bonds 
    27798 
    27799 > bond #3/GC:87@C #3/GC:88@N reasonable false
    27800 
    27801 Created 0 bonds 
    27802 
    27803 > bond #3/GC:88@C #3/GC:89@N reasonable false
    27804 
    27805 Created 0 bonds 
    27806 
    27807 > bond #3/GC:89@C #3/GC:90@N reasonable false
    27808 
    27809 Created 0 bonds 
    27810 
    27811 > bond #3/GC:90@C #3/GC:91@N reasonable false
    27812 
    27813 Created 0 bonds 
    27814 
    27815 > bond #3/GC:91@C #3/GC:92@N reasonable false
    27816 
    27817 Created 1 bond 
    27818 
    27819 > bond #3/GC:31@C #3/GC:32@N reasonable false
    27820 
    27821 Created 0 bonds 
    27822 
    27823 > bond #3/GC:32@C #3/GC:33@N reasonable false
    27824 
    27825 Created 0 bonds 
    27826 
    27827 > bond #3/GC:33@C #3/GC:34@N reasonable false
    27828 
    27829 Created 0 bonds 
    27830 
    27831 > bond #3/GC:34@C #3/GC:35@N reasonable false
    27832 
    27833 Created 1 bond 
    27834 
    27835 > bond #3/GC:60@C #3/GC:61@N reasonable false
    27836 
    27837 Created 0 bonds 
    27838 
    27839 > bond #3/GC:61@C #3/GC:62@N reasonable false
    27840 
    27841 Created 0 bonds 
    27842 
    27843 > bond #3/GC:62@C #3/GC:63@N reasonable false
    27844 
    27845 Created 0 bonds 
    27846 
    27847 > bond #3/GC:63@C #3/GC:64@N reasonable false
    27848 
    27849 Created 1 bond 
    27850 
    27851 > bond #3/GC:35@C #3/GC:36@N reasonable false
    27852 
    27853 Created 0 bonds 
    27854 
    27855 > bond #3/GC:36@C #3/GC:37@N reasonable false
    27856 
    27857 Created 0 bonds 
    27858 
    27859 > bond #3/GC:37@C #3/GC:38@N reasonable false
    27860 
    27861 Created 0 bonds 
    27862 
    27863 > bond #3/GC:38@C #3/GC:39@N reasonable false
    27864 
    27865 Created 0 bonds 
    27866 
    27867 > bond #3/GC:39@C #3/GC:40@N reasonable false
    27868 
    27869 Created 0 bonds 
    27870 
    27871 > bond #3/GC:40@C #3/GC:41@N reasonable false
    27872 
    27873 Created 0 bonds 
    27874 
    27875 > bond #3/GC:41@C #3/GC:42@N reasonable false
    27876 
    27877 Created 0 bonds 
    27878 
    27879 > bond #3/GC:42@C #3/GC:43@N reasonable false
    27880 
    27881 Created 0 bonds 
    27882 
    27883 > bond #3/GC:43@C #3/GC:44@N reasonable false
    27884 
    27885 Created 0 bonds 
    27886 
    27887 > bond #3/GC:44@C #3/GC:45@N reasonable false
    27888 
    27889 Created 0 bonds 
    27890 
    27891 > bond #3/GC:45@C #3/GC:46@N reasonable false
    27892 
    27893 Created 0 bonds 
    27894 
    27895 > bond #3/GC:46@C #3/GC:47@N reasonable false
    27896 
    27897 Created 0 bonds 
    27898 
    27899 > bond #3/GC:47@C #3/GC:48@N reasonable false
    27900 
    27901 Created 0 bonds 
    27902 
    27903 > bond #3/GC:48@C #3/GC:49@N reasonable false
    27904 
    27905 Created 0 bonds 
    27906 
    27907 > bond #3/GC:49@C #3/GC:50@N reasonable false
    27908 
    27909 Created 1 bond 
    27910 
    27911 > bond #3/GC:17@C #3/GC:18@N reasonable false
    27912 
    27913 Created 0 bonds 
    27914 
    27915 > bond #3/GC:18@C #3/GC:19@N reasonable false
    27916 
    27917 Created 0 bonds 
    27918 
    27919 > bond #3/GC:19@C #3/GC:20@N reasonable false
    27920 
    27921 Created 0 bonds 
    27922 
    27923 > bond #3/GC:20@C #3/GC:21@N reasonable false
    27924 
    27925 Created 0 bonds 
    27926 
    27927 > bond #3/GC:21@C #3/GC:22@N reasonable false
    27928 
    27929 Created 0 bonds 
    27930 
    27931 > bond #3/GC:22@C #3/GC:23@N reasonable false
    27932 
    27933 Created 0 bonds 
    27934 
    27935 > bond #3/GC:23@C #3/GC:24@N reasonable false
    27936 
    27937 Created 0 bonds 
    27938 
    27939 > bond #3/GC:24@C #3/GC:25@N reasonable false
    27940 
    27941 Created 1 bond 
    27942 
    27943 > swapaa #3/GC:17 ARG
    27944 
    27945 Using Dunbrack library 
    27946 mutadedModel #3/GC ALA 17: phi none, psi 24.1 trans 
    27947 Applying ARG rotamer (chi angles: 66.4 -175.2 -177.5 -82.5) to mutadedModel
    27948 #3/GC ARG 17 
    27949 
    27950 > color #3/GC:17 yellow
    27951 
    27952 > swapaa #3/GC:18 VAL
    27953 
    27954 Using Dunbrack library 
    27955 mutadedModel #3/GC SER 18: phi -65.6, psi -64.9 trans 
    27956 Applying VAL rotamer (chi angles: 172.7) to mutadedModel #3/GC VAL 18 
    27957 
    27958 > color #3/GC:18 yellow
    27959 
    27960 > swapaa #3/GC:19 SER
    27961 
    27962 Using Dunbrack library 
    27963 mutadedModel #3/GC PHE 19: phi -67.1, psi -7.8 trans 
    27964 Applying SER rotamer (chi angles: -65.2) to mutadedModel #3/GC SER 19 
    27965 
    27966 > color #3/GC:19 yellow
    27967 
    27968 > swapaa #3/GC:20 LEU
    27969 
    27970 Using Dunbrack library 
    27971 mutadedModel #3/GC VAL 20: phi -104.1, psi 10.0 trans 
    27972 Applying LEU rotamer (chi angles: -83.3 62.4) to mutadedModel #3/GC LEU 20 
    27973 
    27974 > color #3/GC:20 yellow
    27975 
    27976 > swapaa #3/GC:21 VAL
    27977 
    27978 Using Dunbrack library 
    27979 mutadedModel #3/GC ASN 21: phi -157.0, psi -10.6 trans 
    27980 Applying VAL rotamer (chi angles: 66.4) to mutadedModel #3/GC VAL 21 
    27981 
    27982 > color #3/GC:21 yellow
    27983 
    27984 > swapaa #3/GC:22 PHE
    27985 
    27986 Using Dunbrack library 
    27987 mutadedModel #3/GC LYS 22: phi -119.7, psi 158.6 trans 
    27988 Applying PHE rotamer (chi angles: -63.4 90.9) to mutadedModel #3/GC PHE 22 
    27989 
    27990 > color #3/GC:22 yellow
    27991 
    27992 > swapaa #3/GC:23 LYS
    27993 
    27994 Using Dunbrack library 
    27995 mutadedModel #3/GC GLN 23: phi -81.2, psi 135.5 trans 
    27996 Applying LYS rotamer (chi angles: -176.3 -95.2 -71.1 178.0) to mutadedModel
    27997 #3/GC LYS 23 
    27998 
    27999 > color #3/GC:23 yellow
    28000 
    28001 > swapaa #3/GC:24 GLN
    28002 
    28003 Using Dunbrack library 
    28004 mutadedModel #3/GC ARG 24: phi -63.4, psi -178.1 trans 
    28005 Applying GLN rotamer (chi angles: -65.6 -179.3 53.8) to mutadedModel #3/GC GLN
    28006 24 
    28007 
    28008 > color #3/GC:24 yellow
    28009 
    28010 > swapaa #3/GC:25 LEU
    28011 
    28012 Using Dunbrack library 
    28013 mutadedModel #3/GC GLY 25: phi -30.5, psi -7.1 trans 
    28014 Applying LEU rotamer (chi angles: 71.7 165.6) to mutadedModel #3/GC LEU 25 
    28015 
    28016 > color #3/GC:25 yellow
    28017 
    28018 > swapaa #3/GC:26 GLU
    28019 
    28020 Using Dunbrack library 
    28021 mutadedModel #3/GC GLY 26: phi -7.0, psi -35.7 cis 
    28022 Applying GLU rotamer (chi angles: -176.9 177.5 -0.8) to mutadedModel #3/GC GLU
    28023 26 
    28024 
    28025 > color #3/GC:26 yellow
    28026 
    28027 > swapaa #3/GC:27 GLY
    28028 
    28029 Using Dunbrack library 
    28030 Swapping mutadedModel #3/GC PRO 27 to GLY 
    28031 
    28032 > color #3/GC:27 yellow
    28033 
    28034 > swapaa #3/GC:28 ASN
    28035 
    28036 Using Dunbrack library 
    28037 mutadedModel #3/GC MET 28: phi 177.6, psi 114.6 trans 
    28038 Applying ASN rotamer (chi angles: -68.0 -36.6) to mutadedModel #3/GC ASN 28 
    28039 
    28040 > color #3/GC:28 yellow
    28041 
    28042 > swapaa #3/GC:29 ALA
    28043 
    28044 Using Dunbrack library 
    28045 Swapping mutadedModel #3/GC GLY 29 to ALA 
    28046 
    28047 > color #3/GC:29 yellow
    28048 
    28049 > swapaa #3/GC:30 PRO
    28050 
    28051 Using Dunbrack library 
    28052 mutadedModel #3/GC SER 30: phi -9.8, psi 16.7 cis 
    28053 Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/GC PRO 30 
    28054 
    28055 > color #3/GC:30 yellow
    28056 
    28057 > swapaa #3/GC:31 LEU
    28058 
    28059 Using Dunbrack library 
    28060 mutadedModel #3/GC PRO 31: phi -163.8, psi 159.7 trans 
    28061 Applying LEU rotamer (chi angles: -73.9 -60.3) to mutadedModel #3/GC LEU 31 
    28062 
    28063 > color #3/GC:31 yellow
    28064 
    28065 > swapaa #3/GC:32 THR
    28066 
    28067 Using Dunbrack library 
    28068 mutadedModel #3/GC LYS 32: phi -73.5, psi 91.1 trans 
    28069 Applying THR rotamer (chi angles: -59.5) to mutadedModel #3/GC THR 32 
    28070 
    28071 > color #3/GC:32 yellow
    28072 
    28073 > swapaa #3/GC:33 LYS
    28074 
    28075 Using Dunbrack library 
    28076 mutadedModel #3/GC ASN 33: phi 52.7, psi 74.9 trans 
    28077 Applying LYS rotamer (chi angles: -58.1 -68.4 -173.3 -67.0) to mutadedModel
    28078 #3/GC LYS 33 
    28079 
    28080 > color #3/GC:33 yellow
    28081 
    28082 > swapaa #3/GC:34 LYS
    28083 
    28084 Using Dunbrack library 
    28085 mutadedModel #3/GC ASN 34: phi 4.8, psi 29.4 trans 
    28086 Applying LYS rotamer (chi angles: -177.3 176.2 174.5 64.9) to mutadedModel
    28087 #3/GC LYS 34 
    28088 
    28089 > color #3/GC:34 yellow
    28090 
    28091 > swapaa #3/GC:35 ASN
    28092 
    28093 Using Dunbrack library 
    28094 mutadedModel #3/GC HIS 35: phi -52.6, psi 170.2 trans 
    28095 Applying ASN rotamer (chi angles: 66.2 172.9) to mutadedModel #3/GC ASN 35 
    28096 
    28097 > color #3/GC:35 yellow
    28098 
    28099 > swapaa #3/GC:36 LYS
    28100 
    28101 Using Dunbrack library 
    28102 mutadedModel #3/GC PRO 36: phi -62.1, psi -173.6 trans 
    28103 Applying LYS rotamer (chi angles: 69.2 -89.5 176.9 -68.2) to mutadedModel
    28104 #3/GC LYS 36 
    28105 
    28106 > color #3/GC:36 yellow
    28107 
    28108 > swapaa #3/GC:37 PRO
    28109 
    28110 Using Dunbrack library 
    28111 mutadedModel #3/GC ASN 37: phi -101.6, psi 56.4 trans 
    28112 Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/GC PRO 37 
    28113 
    28114 > color #3/GC:37 yellow
    28115 
    28116 > swapaa #3/GC:38 VAL
    28117 
    28118 Using Dunbrack library 
    28119 mutadedModel #3/GC SER 38: phi -65.6, psi 27.8 trans 
    28120 Applying VAL rotamer (chi angles: -61.5) to mutadedModel #3/GC VAL 38 
    28121 
    28122 > color #3/GC:38 yellow
    28123 
    28124 > swapaa #3/GC:39 ASN
    28125 
    28126 Using Dunbrack library 
    28127 mutadedModel #3/GC GLY 39: phi 53.2, psi -7.5 cis 
    28128 Applying ASN rotamer (chi angles: -164.3 120.5) to mutadedModel #3/GC ASN 39 
    28129 
    28130 > color #3/GC:39 yellow
    28131 
    28132 > swapaa #3/GC:41 TRP
    28133 
    28134 Using Dunbrack library 
    28135 mutadedModel #3/GC GLY 41: phi -107.1, psi -14.4 trans 
    28136 Applying TRP rotamer (chi angles: -65.3 42.3) to mutadedModel #3/GC TRP 41 
    28137 
    28138 > color #3/GC:41 yellow
    28139 
    28140 > swapaa #3/GC:43 ASP
    28141 
    28142 Using Dunbrack library 
    28143 mutadedModel #3/GC VAL 43: phi -74.7, psi -30.7 trans 
    28144 Applying ASP rotamer (chi angles: -71.2 7.5) to mutadedModel #3/GC ASP 43 
    28145 
    28146 > color #3/GC:43 yellow
    28147 
    28148 > swapaa #3/GC:44 GLU
    28149 
    28150 Using Dunbrack library 
    28151 mutadedModel #3/GC VAL 44: phi -96.6, psi -39.5 trans 
    28152 Applying GLU rotamer (chi angles: -64.1 -65.9 -41.1) to mutadedModel #3/GC GLU
    28153 44 
    28154 
    28155 > color #3/GC:44 yellow
    28156 
    28157 > swapaa #3/GC:45 PHE
    28158 
    28159 Using Dunbrack library 
    28160 mutadedModel #3/GC GLY 45: phi -93.1, psi -11.9 trans 
    28161 Applying PHE rotamer (chi angles: -164.9 48.2) to mutadedModel #3/GC PHE 45 
    28162 
    28163 > color #3/GC:45 yellow
    28164 
    28165 > swapaa #3/GC:46 MET
    28166 
    28167 Using Dunbrack library 
    28168 mutadedModel #3/GC LYS 46: phi -121.3, psi -175.1 trans 
    28169 Applying MET rotamer (chi angles: 64.6 179.1 -71.6) to mutadedModel #3/GC MET
    28170 46 
    28171 
    28172 > color #3/GC:46 yellow
    28173 
    28174 > swapaa #3/GC:47 LYS
    28175 
    28176 Using Dunbrack library 
    28177 mutadedModel #3/GC PHE 47: phi -108.9, psi 162.7 trans 
    28178 Applying LYS rotamer (chi angles: 63.7 93.2 173.8 178.2) to mutadedModel #3/GC
    28179 LYS 47 
    28180 
    28181 > color #3/GC:47 yellow
    28182 
    28183 > swapaa #3/GC:48 PRO
    28184 
    28185 Using Dunbrack library 
    28186 mutadedModel #3/GC THR 48: phi -81.7, psi 166.6 trans 
    28187 Applying PRO rotamer (chi angles: 32.2 -37.1) to mutadedModel #3/GC PRO 48 
    28188 
    28189 > color #3/GC:48 yellow
    28190 
    28191 > swapaa #3/GC:50 GLN
    28192 
    28193 Using Dunbrack library 
    28194 mutadedModel #3/GC ASP 50: phi -103.3, psi -158.8 trans 
    28195 Applying GLN rotamer (chi angles: -65.8 81.3 -108.3) to mutadedModel #3/GC GLN
    28196 50 
    28197 
    28198 > color #3/GC:50 yellow
    28199 
    28200 > swapaa #3/GC:51 SER
    28201 
    28202 Using Dunbrack library 
    28203 mutadedModel #3/GC THR 51: phi -88.5, psi 141.9 trans 
    28204 Applying SER rotamer (chi angles: -64.4) to mutadedModel #3/GC SER 51 
    28205 
    28206 > color #3/GC:51 yellow
    28207 
    28208 > swapaa #3/GC:52 ALA
    28209 
    28210 Using Dunbrack library 
    28211 Swapping mutadedModel #3/GC PRO 52 to ALA 
    28212 
    28213 > color #3/GC:52 yellow
    28214 
    28215 > swapaa #3/GC:53 GLU
    28216 
    28217 Using Dunbrack library 
    28218 mutadedModel #3/GC SER 53: phi -78.8, psi -36.2 trans 
    28219 Applying GLU rotamer (chi angles: -66.5 80.5 9.8) to mutadedModel #3/GC GLU 53 
    28220 
    28221 > color #3/GC:53 yellow
    28222 
    28223 > swapaa #3/GC:54 MET
    28224 
    28225 Using Dunbrack library 
    28226 mutadedModel #3/GC ILE 54: phi -97.5, psi -33.1 trans 
    28227 Applying MET rotamer (chi angles: -65.1 177.9 70.5) to mutadedModel #3/GC MET
    28228 54 
    28229 
    28230 > color #3/GC:54 yellow
    28231 
    28232 > swapaa #3/GC:55 THR
    28233 
    28234 Using Dunbrack library 
    28235 mutadedModel #3/GC ALA 55: phi -51.3, psi 18.2 trans 
    28236 Applying THR rotamer (chi angles: -60.4) to mutadedModel #3/GC THR 55 
    28237 
    28238 > color #3/GC:55 yellow
    28239 
    28240 > swapaa #3/GC:56 THR
    28241 
    28242 Using Dunbrack library 
    28243 mutadedModel #3/GC GLU 56: phi -123.8, psi -32.6 trans 
    28244 Applying THR rotamer (chi angles: 60.6) to mutadedModel #3/GC THR 56 
    28245 
    28246 > color #3/GC:56 yellow
    28247 
    28248 > swapaa #3/GC:58 TYR
    28249 
    28250 Using Dunbrack library 
    28251 mutadedModel #3/GC PHE 58: phi -77.0, psi -75.7 trans 
    28252 Applying TYR rotamer (chi angles: -70.3 133.2) to mutadedModel #3/GC TYR 58 
    28253 
    28254 > color #3/GC:58 yellow
    28255 
    28256 > swapaa #3/GC:60 ARG
    28257 
    28258 Using Dunbrack library 
    28259 mutadedModel #3/GC GLY 60: phi 141.6, psi 160.2 cis 
    28260 Applying ARG rotamer (chi angles: -73.8 85.6 61.5 85.9) to mutadedModel #3/GC
    28261 ARG 60 
    28262 
    28263 > color #3/GC:60 yellow
    28264 
    28265 > swapaa #3/GC:61 TYR
    28266 
    28267 Using Dunbrack library 
    28268 mutadedModel #3/GC GLY 61: phi 97.9, psi 4.4 cis 
    28269 Applying TYR rotamer (chi angles: -60.8 79.7) to mutadedModel #3/GC TYR 61 
    28270 
    28271 > color #3/GC:61 yellow
    28272 
    28273 > swapaa #3/GC:63 LYS
    28274 
    28275 Using Dunbrack library 
    28276 mutadedModel #3/GC ARG 63: phi -59.3, psi -120.0 trans 
    28277 Applying LYS rotamer (chi angles: -177.9 174.8 73.9 70.3) to mutadedModel
    28278 #3/GC LYS 63 
    28279 
    28280 > color #3/GC:63 yellow
    28281 
    28282 > swapaa #3/GC:64 TYR
    28283 
    28284 Using Dunbrack library 
    28285 mutadedModel #3/GC GLY 64: phi -123.1, psi -9.4 trans 
    28286 Applying TYR rotamer (chi angles: 63.1 107.3) to mutadedModel #3/GC TYR 64 
    28287 
    28288 > color #3/GC:64 yellow
    28289 
    28290 > swapaa #3/GC:65 SER
    28291 
    28292 Using Dunbrack library 
    28293 mutadedModel #3/GC THR 65: phi -62.0, psi 146.3 trans 
    28294 Applying SER rotamer (chi angles: 176.0) to mutadedModel #3/GC SER 65 
    28295 
    28296 > color #3/GC:65 yellow
    28297 
    28298 > swapaa #3/GC:66 ASP
    28299 
    28300 Using Dunbrack library 
    28301 mutadedModel #3/GC VAL 66: phi -80.2, psi 122.8 trans 
    28302 Applying ASP rotamer (chi angles: -69.3 37.9) to mutadedModel #3/GC ASP 66 
    28303 
    28304 > color #3/GC:66 yellow
    28305 
    28306 > swapaa #3/GC:67 PRO
    28307 
    28308 Using Dunbrack library 
    28309 mutadedModel #3/GC THR 67: phi -70.9, psi -21.2 trans 
    28310 Applying PRO rotamer (chi angles: 25.3 -34.6) to mutadedModel #3/GC PRO 67 
    28311 
    28312 > color #3/GC:67 yellow
    28313 
    28314 > swapaa #3/GC:68 ALA
    28315 
    28316 Using Dunbrack library 
    28317 Swapping mutadedModel #3/GC GLU 68 to ALA 
    28318 
    28319 > color #3/GC:68 yellow
    28320 
    28321 > swapaa #3/GC:69 LEU
    28322 
    28323 Using Dunbrack library 
    28324 mutadedModel #3/GC ARG 69: phi -98.5, psi -7.6 trans 
    28325 Applying LEU rotamer (chi angles: -61.2 176.5) to mutadedModel #3/GC LEU 69 
    28326 
    28327 > color #3/GC:69 yellow
    28328 
    28329 > swapaa #3/GC:70 CYS
    28330 
    28331 Using Dunbrack library 
    28332 mutadedModel #3/GC LEU 70: phi -76.8, psi -20.4 trans 
    28333 Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/GC CYS 70 
    28334 
    28335 > color #3/GC:70 yellow
    28336 
    28337 > swapaa #3/GC:71 ASP
    28338 
    28339 Using Dunbrack library 
    28340 mutadedModel #3/GC SER 71: phi -87.4, psi 115.0 trans 
    28341 Applying ASP rotamer (chi angles: 59.9 -51.7) to mutadedModel #3/GC ASP 71 
    28342 
    28343 > color #3/GC:71 yellow
    28344 
    28345 > swapaa #3/GC:72 VAL
    28346 
    28347 Using Dunbrack library 
    28348 mutadedModel #3/GC ASN 72: phi -68.6, psi 112.4 trans 
    28349 Applying VAL rotamer (chi angles: 177.0) to mutadedModel #3/GC VAL 72 
    28350 
    28351 > color #3/GC:72 yellow
    28352 
    28353 > swapaa #3/GC:73 ASP
    28354 
    28355 Using Dunbrack library 
    28356 mutadedModel #3/GC PRO 73: phi -69.9, psi 123.1 trans 
    28357 Applying ASP rotamer (chi angles: -175.5 -43.1) to mutadedModel #3/GC ASP 73 
    28358 
    28359 > color #3/GC:73 yellow
    28360 
    28361 > swapaa #3/GC:77 GLU
    28362 
    28363 Using Dunbrack library 
    28364 mutadedModel #3/GC ARG 77: phi -80.1, psi 128.9 trans 
    28365 Applying GLU rotamer (chi angles: -176.4 178.6 -1.2) to mutadedModel #3/GC GLU
    28366 77 
    28367 
    28368 > color #3/GC:77 yellow
    28369 
    28370 > swapaa #3/GC:78 VAL
    28371 
    28372 Using Dunbrack library 
    28373 mutadedModel #3/GC ILE 78: phi -96.2, psi 101.9 trans 
    28374 Applying VAL rotamer (chi angles: 179.9) to mutadedModel #3/GC VAL 78 
    28375 
    28376 > color #3/GC:78 yellow
    28377 
    28378 > swapaa #3/GC:79 VAL
    28379 
    28380 Using Dunbrack library 
    28381 mutadedModel #3/GC THR 79: phi -94.2, psi 100.3 trans 
    28382 Applying VAL rotamer (chi angles: 179.6) to mutadedModel #3/GC VAL 79 
    28383 
    28384 > color #3/GC:79 yellow
    28385 
    28386 > swapaa #3/GC:80 LEU
    28387 
    28388 Using Dunbrack library 
    28389 mutadedModel #3/GC GLN 80: phi -96.7, psi 161.2 trans 
    28390 Applying LEU rotamer (chi angles: 179.2 65.2) to mutadedModel #3/GC LEU 80 
    28391 
    28392 > color #3/GC:80 yellow
    28393 
    28394 > swapaa #3/GC:81 ASN
    28395 
    28396 Using Dunbrack library 
    28397 mutadedModel #3/GC LYS 81: phi -67.7, psi 127.2 trans 
    28398 Applying ASN rotamer (chi angles: -67.9 87.8) to mutadedModel #3/GC ASN 81 
    28399 
    28400 > color #3/GC:81 yellow
    28401 
    28402 > swapaa #3/GC:85 ASP
    28403 
    28404 Using Dunbrack library 
    28405 mutadedModel #3/GC GLY 85: phi -71.4, psi 7.7 trans 
    28406 Applying ASP rotamer (chi angles: -168.7 0.3) to mutadedModel #3/GC ASP 85 
    28407 
    28408 > color #3/GC:85 yellow
    28409 
    28410 > swapaa #3/GC:87 ALA
    28411 
    28412 Using Dunbrack library 
    28413 Swapping mutadedModel #3/GC SER 87 to ALA 
    28414 
    28415 > color #3/GC:87 yellow
    28416 
    28417 > swapaa #3/GC:89 GLN
    28418 
    28419 Using Dunbrack library 
    28420 mutadedModel #3/GC ASN 89: phi -77.6, psi 19.6 trans 
    28421 Applying GLN rotamer (chi angles: -65.3 178.8 -22.5) to mutadedModel #3/GC GLN
    28422 89 
    28423 
    28424 > color #3/GC:89 yellow
    28425 
    28426 > swapaa #3/GC:92 ILE
    28427 
    28428 Using Dunbrack library 
    28429 mutadedModel #3/GC VAL 92: phi -71.5, psi 15.7 trans 
    28430 Applying ILE rotamer (chi angles: 57.6 78.7) to mutadedModel #3/GC ILE 92 
    28431 
    28432 > color #3/GC:92 yellow
    28433 
    28434 > swapaa #3/GC:93 GLU
    28435 
    28436 Using Dunbrack library 
    28437 mutadedModel #3/GC GLN 93: phi -77.3, psi -31.1 trans 
    28438 Applying GLU rotamer (chi angles: -65.5 81.7 -49.6) to mutadedModel #3/GC GLU
    28439 93 
    28440 
    28441 > color #3/GC:93 yellow
    28442 
    28443 > swapaa #3/GC:98 VAL
    28444 
    28445 Using Dunbrack library 
    28446 mutadedModel #3/GC ALA 98: phi -100.0, psi 152.3 trans 
    28447 Applying VAL rotamer (chi angles: -62.4) to mutadedModel #3/GC VAL 98 
    28448 
    28449 > color #3/GC:98 yellow
    28450 
    28451 > swapaa #3/GC:101 LYS
    28452 
    28453 Using Dunbrack library 
    28454 mutadedModel #3/GC ASP 101: phi -85.9, psi -19.4 trans 
    28455 Applying LYS rotamer (chi angles: -178.1 67.8 178.4 -63.2) to mutadedModel
    28456 #3/GC LYS 101 
    28457 
    28458 > color #3/GC:101 yellow
    28459 
    28460 > swapaa #3/GC:102 ASP
    28461 
    28462 Using Dunbrack library 
    28463 mutadedModel #3/GC LYS 102: phi -85.2, psi 19.4 trans 
    28464 Applying ASP rotamer (chi angles: -67.2 -29.4) to mutadedModel #3/GC ASP 102 
    28465 
    28466 > color #3/GC:102 yellow
    28467 
    28468 > swapaa #3/GC:103 TYR
    28469 
    28470 Using Dunbrack library 
    28471 mutadedModel #3/GC HIS 103: phi -96.1, psi 125.6 trans 
    28472 Applying TYR rotamer (chi angles: 179.0 77.3) to mutadedModel #3/GC TYR 103 
    28473 
    28474 > color #3/GC:103 yellow
    28475 
    28476 > swapaa #3/GC:104 ASP
    28477 
    28478 Using Dunbrack library 
    28479 mutadedModel #3/GC SER 104: phi -131.2, psi 165.1 trans 
    28480 Applying ASP rotamer (chi angles: 64.3 17.8) to mutadedModel #3/GC ASP 104 
    28481 
    28482 > color #3/GC:104 yellow
    28483 
    28484 > swapaa #3/GC:105 ALA
    28485 
    28486 Using Dunbrack library 
    28487 Swapping mutadedModel #3/GC ASP 105 to ALA 
    28488 
    28489 > color #3/GC:105 yellow
    28490 
    28491 > swapaa #3/GC:107 MET
    28492 
    28493 Using Dunbrack library 
    28494 mutadedModel #3/GC THR 107: phi -64.9, psi 74.1 trans 
    28495 Applying MET rotamer (chi angles: -176.1 179.0 -70.3) to mutadedModel #3/GC
    28496 MET 107 
    28497 
    28498 > color #3/GC:107 yellow
    28499 
    28500 > swapaa #3/GC:108 TRP
    28501 
    28502 Using Dunbrack library 
    28503 mutadedModel #3/GC ARG 108: phi -150.1, psi 147.1 trans 
    28504 Applying TRP rotamer (chi angles: -62.0 -93.1) to mutadedModel #3/GC TRP 108 
    28505 
    28506 > color #3/GC:108 yellow
    28507 
    28508 > swapaa #3/GC:109 ASP
    28509 
    28510 Using Dunbrack library 
    28511 mutadedModel #3/GC THR 109: phi -95.7, psi -144.1 trans 
    28512 Applying ASP rotamer (chi angles: -166.8 -67.3) to mutadedModel #3/GC ASP 109 
    28513 
    28514 > color #3/GC:109 yellow
    28515 
    28516 > swapaa #3/GC:112 PHE
    28517 
    28518 Using Dunbrack library 
    28519 mutadedModel #3/GC ARG 112: phi -64.8, psi -31.0 trans 
    28520 Applying PHE rotamer (chi angles: -73.7 106.8) to mutadedModel #3/GC PHE 112 
    28521 
    28522 > color #3/GC:112 yellow
    28523 
    28524 > swapaa #3/GC:118 LEU
    28525 
    28526 Using Dunbrack library 
    28527 mutadedModel #3/GC MET 118: phi -106.2, psi 123.8 trans 
    28528 Applying LEU rotamer (chi angles: -59.2 176.5) to mutadedModel #3/GC LEU 118 
    28529 
    28530 > color #3/GC:118 yellow
    28531 
    28532 > swapaa #3/GC:122 LEU
    28533 
    28534 Using Dunbrack library 
    28535 mutadedModel #3/GC SER 122: phi -124.4, psi 125.7 trans 
    28536 Applying LEU rotamer (chi angles: -60.7 174.7) to mutadedModel #3/GC LEU 122 
    28537 
    28538 > color #3/GC:122 yellow
    28539 
    28540 > swapaa #3/GC:123 ALA
    28541 
    28542 Using Dunbrack library 
    28543 Swapping mutadedModel #3/GC PRO 123 to ALA 
    28544 
    28545 > color #3/GC:123 yellow
    28546 
    28547 > swapaa #3/GC:124 ASP
    28548 
    28549 Using Dunbrack library 
    28550 mutadedModel #3/GC ALA 124: phi -72.7, psi -27.2 trans 
    28551 Applying ASP rotamer (chi angles: 59.1 -22.9) to mutadedModel #3/GC ASP 124 
    28552 
    28553 > color #3/GC:124 yellow
    28554 
    28555 > swapaa #3/GC:126 VAL
    28556 
    28557 Using Dunbrack library 
    28558 mutadedModel #3/GC THR 126: phi -84.1, psi 9.9 trans 
    28559 Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/GC VAL 126 
    28560 
    28561 > color #3/GC:126 yellow
    28562 
    28563 > swapaa #3/GC:127 GLU
    28564 
    28565 Using Dunbrack library 
    28566 mutadedModel #3/GC ALA 127: phi -82.1, psi -33.1 trans 
    28567 Applying GLU rotamer (chi angles: -175.6 64.5 19.8) to mutadedModel #3/GC GLU
    28568 127 
    28569 
    28570 > color #3/GC:127 yellow
    28571 
    28572 > swapaa #3/GC:128 ASP
    28573 
    28574 Using Dunbrack library 
    28575 mutadedModel #3/GC GLU 128: phi -75.3, psi -22.3 trans 
    28576 Applying ASP rotamer (chi angles: -168.8 2.2) to mutadedModel #3/GC ASP 128 
    28577 
    28578 > color #3/GC:128 yellow
    28579 
    28580 > swapaa #3/GC:129 ARG
    28581 
    28582 Using Dunbrack library 
    28583 mutadedModel #3/GC TRP 129: phi -74.5, psi 1.4 trans 
    28584 Applying ARG rotamer (chi angles: 69.7 -177.4 177.4 87.0) to mutadedModel
    28585 #3/GC ARG 129 
    28586 
    28587 > color #3/GC:129 yellow
    28588 
    28589 > swapaa #3/GC:132 VAL
    28590 
    28591 Using Dunbrack library 
    28592 mutadedModel #3/GC LEU 132: phi -61.1, psi -34.0 trans 
    28593 Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/GC VAL 132 
    28594 
    28595 > color #3/GC:132 yellow
    28596 
    28597 > swapaa #3/GC:133 THR
    28598 
    28599 Using Dunbrack library 
    28600 mutadedModel #3/GC ILE 133: phi -80.6, psi -34.8 trans 
    28601 Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/GC THR 133 
    28602 
    28603 > color #3/GC:133 yellow
    28604 
    28605 > swapaa #3/GC:134 ASP
    28606 
    28607 Using Dunbrack library 
    28608 mutadedModel #3/GC ALA 134: phi -75.2, psi -40.5 trans 
    28609 Applying ASP rotamer (chi angles: 57.9 74.5) to mutadedModel #3/GC ASP 134 
    28610 
    28611 > color #3/GC:134 yellow
    28612 
    28613 > swapaa #3/GC:138 ASN
    28614 
    28615 Using Dunbrack library 
    28616 mutadedModel #3/GC GLU 138: phi -67.0, psi -42.7 trans 
    28617 Applying ASN rotamer (chi angles: -73.1 -22.4) to mutadedModel #3/GC ASN 138 
    28618 
    28619 > color #3/GC:138 yellow
    28620 
    28621 > swapaa #3/GC:139 SER
    28622 
    28623 Using Dunbrack library 
    28624 mutadedModel #3/GC GLU 139: phi -67.6, psi -34.6 trans 
    28625 Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/GC SER 139 
    28626 
    28627 > color #3/GC:139 yellow
    28628 
    28629 > swapaa #3/GC:141 MET
    28630 
    28631 Using Dunbrack library 
    28632 mutadedModel #3/GC PHE 141: phi -50.0, psi -59.4 trans 
    28633 Applying MET rotamer (chi angles: 179.4 -176.3 71.4) to mutadedModel #3/GC MET
    28634 141 
    28635 
    28636 > color #3/GC:141 yellow
    28637 
    28638 > swapaa #3/GC:145 VAL
    28639 
    28640 Using Dunbrack library 
    28641 mutadedModel #3/GC LEU 145: phi -67.9, psi -28.0 trans 
    28642 Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/GC VAL 145 
    28643 
    28644 > color #3/GC:145 yellow
    28645 
    28646 > swapaa #3/GC:148 MET
    28647 
    28648 Using Dunbrack library 
    28649 mutadedModel #3/GC ILE 148: phi -67.3, psi -44.7 trans 
    28650 Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/GC MET
    28651 148 
    28652 
    28653 > color #3/GC:148 yellow
    28654 
    28655 > swapaa #3/GC:150 ARG
    28656 
    28657 Using Dunbrack library 
    28658 mutadedModel #3/GC TYR 150: phi -66.4, psi -36.8 trans 
    28659 Applying ARG rotamer (chi angles: 179.0 65.5 -178.0 85.8) to mutadedModel
    28660 #3/GC ARG 150 
    28661 
    28662 > color #3/GC:150 yellow
    28663 
    28664 > swapaa #3/GC:151 TYR
    28665 
    28666 Using Dunbrack library 
    28667 mutadedModel #3/GC PHE 151: phi -88.2, psi -11.9 trans 
    28668 Applying TYR rotamer (chi angles: -66.8 10.3) to mutadedModel #3/GC TYR 151 
    28669 
    28670 > color #3/GC:151 yellow
    28671 
    28672 > swapaa #3/GC:156 LEU
    28673 
    28674 Using Dunbrack library 
    28675 mutadedModel #3/GC GLN 156: phi -69.8, psi -23.7 trans 
    28676 Applying LEU rotamer (chi angles: -171.7 59.3) to mutadedModel #3/GC LEU 156 
    28677 
    28678 > color #3/GC:156 yellow
    28679 
    28680 > swapaa #3/GC:157 TRP
    28681 
    28682 Using Dunbrack library 
    28683 mutadedModel #3/GC ARG 157: phi -78.1, psi -38.2 trans 
    28684 Applying TRP rotamer (chi angles: -71.1 107.7) to mutadedModel #3/GC TRP 157 
    28685 
    28686 > color #3/GC:157 yellow
    28687 
    28688 > swapaa #3/GC:158 TYR
    28689 
    28690 Using Dunbrack library 
    28691 mutadedModel #3/GC ARG 158: phi -66.2, psi -14.8 trans 
    28692 Applying TYR rotamer (chi angles: -70.2 -17.0) to mutadedModel #3/GC TYR 158 
    28693 
    28694 > color #3/GC:158 yellow
    28695 
    28696 > swapaa #3/GC:161 GLN
    28697 
    28698 Using Dunbrack library 
    28699 mutadedModel #3/GC LEU 161: phi -87.4, psi 173.7 trans 
    28700 Applying GLN rotamer (chi angles: -60.5 -63.3 -109.6) to mutadedModel #3/GC
    28701 GLN 161 
    28702 
    28703 > color #3/GC:161 yellow
    28704 
    28705 > swapaa #3/GC:163 ALA
    28706 
    28707 Using Dunbrack library 
    28708 Swapping mutadedModel #3/GC SER 163 to ALA 
    28709 
    28710 > color #3/GC:163 yellow
    28711 
    28712 > swapaa #3/GC:164 MET
    28713 
    28714 Using Dunbrack library 
    28715 mutadedModel #3/GC GLN 164: phi -52.1, psi -35.9 trans 
    28716 Applying MET rotamer (chi angles: -174.4 179.9 -68.7) to mutadedModel #3/GC
    28717 MET 164 
    28718 
    28719 > color #3/GC:164 yellow
    28720 
    28721 > swapaa #3/GC:165 SER
    28722 
    28723 Using Dunbrack library 
    28724 mutadedModel #3/GC GLU 165: phi -69.3, psi -39.6 trans 
    28725 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/GC SER 165 
    28726 
    28727 > color #3/GC:165 yellow
    28728 
    28729 > swapaa #3/GC:166 MET
    28730 
    28731 Using Dunbrack library 
    28732 mutadedModel #3/GC GLU 166: phi -68.1, psi -28.7 trans 
    28733 Applying MET rotamer (chi angles: -68.5 177.3 70.7) to mutadedModel #3/GC MET
    28734 166 
    28735 
    28736 > color #3/GC:166 yellow
    28737 
    28738 > swapaa #3/GC:168 GLY
    28739 
    28740 Using Dunbrack library 
    28741 Swapping mutadedModel #3/GC ALA 168 to GLY 
    28742 
    28743 > color #3/GC:168 yellow
    28744 
    28745 > swapaa #3/GC:170 MET
    28746 
    28747 Using Dunbrack library 
    28748 mutadedModel #3/GC LEU 170: phi -79.7, psi -15.1 trans 
    28749 Applying MET rotamer (chi angles: -67.3 -58.7 -67.1) to mutadedModel #3/GC MET
    28750 170 
    28751 
    28752 > color #3/GC:170 yellow
    28753 
    28754 > swapaa #3/GC:171 ASN
    28755 
    28756 Using Dunbrack library 
    28757 mutadedModel #3/GC ILE 171: phi -86.1, psi -8.1 trans 
    28758 Applying ASN rotamer (chi angles: -69.1 -32.5) to mutadedModel #3/GC ASN 171 
    28759 
    28760 > color #3/GC:171 yellow
    28761 
    28762 > swapaa #3/GC:172 ILE
    28763 
    28764 Using Dunbrack library 
    28765 mutadedModel #3/GC LEU 172: phi -70.4, psi none trans 
    28766 Applying ILE rotamer (chi angles: -63.8 170.1) to mutadedModel #3/GC ILE 172 
    28767 
    28768 > color #3/GC:172 yellow
    28769 
    28770 > select #3/Gc
    28771 
    28772 3780 atoms, 3838 bonds, 1 pseudobond, 482 residues, 2 models selected 
    28773 
    28774 > bond #3/Gc:326@C #3/Gc:327@N reasonable false
    28775 
    28776 Created 0 bonds 
    28777 
    28778 > bond #3/Gc:327@C #3/Gc:328@N reasonable false
    28779 
    28780 Created 1 bond 
    28781 
    28782 > bond #3/Gc:63@C #3/Gc:64@N reasonable false
    28783 
    28784 Created 0 bonds 
    28785 
    28786 > bond #3/Gc:64@C #3/Gc:65@N reasonable false
    28787 
    28788 Created 1 bond 
    28789 
    28790 > bond #3/Gc:470@C #3/Gc:471@N reasonable false
    28791 
    28792 Created 0 bonds 
    28793 
    28794 > bond #3/Gc:471@C #3/Gc:472@N reasonable false
    28795 
    28796 Created 0 bonds 
    28797 
    28798 > bond #3/Gc:472@C #3/Gc:473@N reasonable false
    28799 
    28800 Created 0 bonds 
    28801 
    28802 > bond #3/Gc:473@C #3/Gc:474@N reasonable false
    28803 
    28804 Created 0 bonds 
    28805 
    28806 > bond #3/Gc:474@C #3/Gc:475@N reasonable false
    28807 
    28808 Created 0 bonds 
    28809 
    28810 > bond #3/Gc:475@C #3/Gc:476@N reasonable false
    28811 
    28812 Created 0 bonds 
    28813 
    28814 > bond #3/Gc:476@C #3/Gc:477@N reasonable false
    28815 
    28816 Created 0 bonds 
    28817 
    28818 > bond #3/Gc:477@C #3/Gc:478@N reasonable false
    28819 
    28820 Created 0 bonds 
    28821 
    28822 > bond #3/Gc:478@C #3/Gc:479@N reasonable false
    28823 
    28824 Created 0 bonds 
    28825 
    28826 > bond #3/Gc:479@C #3/Gc:480@N reasonable false
    28827 
    28828 Created 0 bonds 
    28829 
    28830 > bond #3/Gc:480@C #3/Gc:481@N reasonable false
    28831 
    28832 Created 0 bonds 
    28833 
    28834 > bond #3/Gc:481@C #3/Gc:482@N reasonable false
    28835 
    28836 Created 0 bonds 
    28837 
    28838 > bond #3/Gc:482@C #3/Gc:483@N reasonable false
    28839 
    28840 Created 0 bonds 
    28841 
    28842 > bond #3/Gc:483@C #3/Gc:484@N reasonable false
    28843 
    28844 Created 0 bonds 
    28845 
    28846 > bond #3/Gc:484@C #3/Gc:485@N reasonable false
    28847 
    28848 Created 0 bonds 
    28849 
    28850 > bond #3/Gc:485@C #3/Gc:486@N reasonable false
    28851 
    28852 Created 0 bonds 
    28853 
    28854 > bond #3/Gc:486@C #3/Gc:487@N reasonable false
    28855 
    28856 Created 0 bonds 
    28857 
    28858 > bond #3/Gc:487@C #3/Gc:488@N reasonable false
    28859 
    28860 Created 0 bonds 
    28861 
    28862 > bond #3/Gc:488@C #3/Gc:489@N reasonable false
    28863 
    28864 Created 0 bonds 
    28865 
    28866 > bond #3/Gc:489@C #3/Gc:490@N reasonable false
    28867 
    28868 Created 1 bond 
    28869 
    28870 > bond #3/Gc:253@C #3/Gc:254@N reasonable false
    28871 
    28872 Created 0 bonds 
    28873 
    28874 > bond #3/Gc:254@C #3/Gc:255@N reasonable false
    28875 
    28876 Created 0 bonds 
    28877 
    28878 > bond #3/Gc:255@C #3/Gc:256@N reasonable false
    28879 
    28880 Created 0 bonds 
    28881 
    28882 > bond #3/Gc:256@C #3/Gc:257@N reasonable false
    28883 
    28884 Created 0 bonds 
    28885 
    28886 > bond #3/Gc:257@C #3/Gc:258@N reasonable false
    28887 
    28888 Created 0 bonds 
    28889 
    28890 > bond #3/Gc:258@C #3/Gc:259@N reasonable false
    28891 
    28892 Created 0 bonds 
    28893 
    28894 > bond #3/Gc:259@C #3/Gc:260@N reasonable false
    28895 
    28896 Created 0 bonds 
    28897 
    28898 > bond #3/Gc:65@C #3/Gc:66@N reasonable false
    28899 
    28900 Created 0 bonds 
    28901 
    28902 > bond #3/Gc:66@C #3/Gc:67@N reasonable false
    28903 
    28904 Created 0 bonds 
    28905 
    28906 > bond #3/Gc:67@C #3/Gc:68@N reasonable false
    28907 
    28908 Created 0 bonds 
    28909 
    28910 > bond #3/Gc:68@C #3/Gc:69@N reasonable false
    28911 
    28912 Created 0 bonds 
    28913 
    28914 > bond #3/Gc:69@C #3/Gc:70@N reasonable false
    28915 
    28916 Created 0 bonds 
    28917 
    28918 > bond #3/Gc:70@C #3/Gc:71@N reasonable false
    28919 
    28920 Created 0 bonds 
    28921 
    28922 > bond #3/Gc:71@C #3/Gc:72@N reasonable false
    28923 
    28924 Created 0 bonds 
    28925 
    28926 > bond #3/Gc:72@C #3/Gc:73@N reasonable false
    28927 
    28928 Created 0 bonds 
    28929 
    28930 > bond #3/Gc:73@C #3/Gc:74@N reasonable false
    28931 
    28932 Created 0 bonds 
    28933 
    28934 > bond #3/Gc:74@C #3/Gc:75@N reasonable false
    28935 
    28936 Created 0 bonds 
    28937 
    28938 > bond #3/Gc:75@C #3/Gc:76@N reasonable false
    28939 
    28940 Created 0 bonds 
    28941 
    28942 > bond #3/Gc:76@C #3/Gc:77@N reasonable false
    28943 
    28944 Created 0 bonds 
    28945 
    28946 > bond #3/Gc:77@C #3/Gc:78@N reasonable false
    28947 
    28948 Created 0 bonds 
    28949 
    28950 > bond #3/Gc:78@C #3/Gc:79@N reasonable false
    28951 
    28952 Created 0 bonds 
    28953 
    28954 > bond #3/Gc:79@C #3/Gc:80@N reasonable false
    28955 
    28956 Created 0 bonds 
    28957 
    28958 > bond #3/Gc:80@C #3/Gc:81@N reasonable false
    28959 
    28960 Created 0 bonds 
    28961 
    28962 > bond #3/Gc:81@C #3/Gc:82@N reasonable false
    28963 
    28964 Created 0 bonds 
    28965 
    28966 > bond #3/Gc:82@C #3/Gc:83@N reasonable false
    28967 
    28968 Created 0 bonds 
    28969 
    28970 > bond #3/Gc:83@C #3/Gc:84@N reasonable false
    28971 
    28972 Created 0 bonds 
    28973 
    28974 > bond #3/Gc:84@C #3/Gc:85@N reasonable false
    28975 
    28976 Created 0 bonds 
    28977 
    28978 > bond #3/Gc:85@C #3/Gc:86@N reasonable false
    28979 
    28980 Created 0 bonds 
    28981 
    28982 > bond #3/Gc:86@C #3/Gc:87@N reasonable false
    28983 
    28984 Created 1 bond 
    28985 
    28986 > bond #3/Gc:32@C #3/Gc:33@N reasonable false
    28987 
    28988 Created 0 bonds 
    28989 
    28990 > bond #3/Gc:33@C #3/Gc:34@N reasonable false
    28991 
    28992 Created 0 bonds 
    28993 
    28994 > bond #3/Gc:34@C #3/Gc:35@N reasonable false
    28995 
    28996 Created 0 bonds 
    28997 
    28998 > bond #3/Gc:35@C #3/Gc:36@N reasonable false
    28999 
    29000 Created 0 bonds 
    29001 
    29002 > bond #3/Gc:36@C #3/Gc:37@N reasonable false
    29003 
    29004 Created 0 bonds 
    29005 
    29006 > bond #3/Gc:37@C #3/Gc:38@N reasonable false
    29007 
    29008 Created 0 bonds 
    29009 
    29010 > bond #3/Gc:38@C #3/Gc:39@N reasonable false
    29011 
    29012 Created 0 bonds 
    29013 
    29014 > bond #3/Gc:39@C #3/Gc:40@N reasonable false
    29015 
    29016 Created 0 bonds 
    29017 
    29018 > bond #3/Gc:40@C #3/Gc:41@N reasonable false
    29019 
    29020 Created 0 bonds 
    29021 
    29022 > bond #3/Gc:41@C #3/Gc:42@N reasonable false
    29023 
    29024 Created 0 bonds 
    29025 
    29026 > bond #3/Gc:42@C #3/Gc:43@N reasonable false
    29027 
    29028 Created 0 bonds 
    29029 
    29030 > bond #3/Gc:43@C #3/Gc:44@N reasonable false
    29031 
    29032 Created 0 bonds 
    29033 
    29034 > bond #3/Gc:44@C #3/Gc:45@N reasonable false
    29035 
    29036 Created 0 bonds 
    29037 
    29038 > bond #3/Gc:45@C #3/Gc:46@N reasonable false
    29039 
    29040 Created 0 bonds 
    29041 
    29042 > bond #3/Gc:46@C #3/Gc:47@N reasonable false
    29043 
    29044 Created 0 bonds 
    29045 
    29046 > bond #3/Gc:47@C #3/Gc:48@N reasonable false
    29047 
    29048 Created 0 bonds 
    29049 
    29050 > bond #3/Gc:48@C #3/Gc:49@N reasonable false
    29051 
    29052 Created 0 bonds 
    29053 
    29054 > bond #3/Gc:49@C #3/Gc:50@N reasonable false
    29055 
    29056 Created 0 bonds 
    29057 
    29058 > bond #3/Gc:50@C #3/Gc:51@N reasonable false
    29059 
    29060 Created 0 bonds 
    29061 
    29062 > bond #3/Gc:51@C #3/Gc:52@N reasonable false
    29063 
    29064 Created 0 bonds 
    29065 
    29066 > bond #3/Gc:52@C #3/Gc:53@N reasonable false
    29067 
    29068 Created 0 bonds 
    29069 
    29070 > bond #3/Gc:53@C #3/Gc:54@N reasonable false
    29071 
    29072 Created 0 bonds 
    29073 
    29074 > bond #3/Gc:54@C #3/Gc:55@N reasonable false
    29075 
    29076 Created 0 bonds 
    29077 
    29078 > bond #3/Gc:55@C #3/Gc:56@N reasonable false
    29079 
    29080 Created 0 bonds 
    29081 
    29082 > bond #3/Gc:56@C #3/Gc:57@N reasonable false
    29083 
    29084 Created 0 bonds 
    29085 
    29086 > bond #3/Gc:57@C #3/Gc:58@N reasonable false
    29087 
    29088 Created 0 bonds 
    29089 
    29090 > bond #3/Gc:58@C #3/Gc:59@N reasonable false
    29091 
    29092 Created 0 bonds 
    29093 
    29094 > bond #3/Gc:59@C #3/Gc:60@N reasonable false
    29095 
    29096 Created 0 bonds 
    29097 
    29098 > bond #3/Gc:60@C #3/Gc:61@N reasonable false
    29099 
    29100 Created 0 bonds 
    29101 
    29102 > bond #3/Gc:61@C #3/Gc:62@N reasonable false
    29103 
    29104 Created 0 bonds 
    29105 
    29106 > bond #3/Gc:62@C #3/Gc:63@N reasonable false
    29107 
    29108 Created 1 bond 
    29109 
    29110 > bond #3/Gc:314@C #3/Gc:315@N reasonable false
    29111 
    29112 Created 0 bonds 
    29113 
    29114 > bond #3/Gc:315@C #3/Gc:316@N reasonable false
    29115 
    29116 Created 0 bonds 
    29117 
    29118 > bond #3/Gc:316@C #3/Gc:317@N reasonable false
    29119 
    29120 Created 0 bonds 
    29121 
    29122 > bond #3/Gc:317@C #3/Gc:318@N reasonable false
    29123 
    29124 Created 0 bonds 
    29125 
    29126 > bond #3/Gc:318@C #3/Gc:319@N reasonable false
    29127 
    29128 Created 0 bonds 
    29129 
    29130 > bond #3/Gc:319@C #3/Gc:320@N reasonable false
    29131 
    29132 Created 0 bonds 
    29133 
    29134 > bond #3/Gc:320@C #3/Gc:321@N reasonable false
    29135 
    29136 Created 0 bonds 
    29137 
    29138 > bond #3/Gc:321@C #3/Gc:322@N reasonable false
    29139 
    29140 Created 0 bonds 
    29141 
    29142 > bond #3/Gc:322@C #3/Gc:323@N reasonable false
    29143 
    29144 Created 0 bonds 
    29145 
    29146 > bond #3/Gc:31@C #3/Gc:32@N reasonable false
    29147 
    29148 Created 1 bond 
    29149 
    29150 > bond #3/Gc:262@C #3/Gc:263@N reasonable false
    29151 
    29152 Created 0 bonds 
    29153 
    29154 > bond #3/Gc:263@C #3/Gc:264@N reasonable false
    29155 
    29156 Created 0 bonds 
    29157 
    29158 > bond #3/Gc:264@C #3/Gc:265@N reasonable false
    29159 
    29160 Created 0 bonds 
    29161 
    29162 > bond #3/Gc:265@C #3/Gc:266@N reasonable false
    29163 
    29164 Created 0 bonds 
    29165 
    29166 > bond #3/Gc:266@C #3/Gc:267@N reasonable false
    29167 
    29168 Created 0 bonds 
    29169 
    29170 > bond #3/Gc:267@C #3/Gc:268@N reasonable false
    29171 
    29172 Created 0 bonds 
    29173 
    29174 > bond #3/Gc:268@C #3/Gc:269@N reasonable false
    29175 
    29176 Created 0 bonds 
    29177 
    29178 > bond #3/Gc:269@C #3/Gc:270@N reasonable false
    29179 
    29180 Created 0 bonds 
    29181 
    29182 > bond #3/Gc:270@C #3/Gc:271@N reasonable false
    29183 
    29184 Created 0 bonds 
    29185 
    29186 > bond #3/Gc:271@C #3/Gc:272@N reasonable false
    29187 
    29188 Created 0 bonds 
    29189 
    29190 > bond #3/Gc:272@C #3/Gc:273@N reasonable false
    29191 
    29192 Created 0 bonds 
    29193 
    29194 > bond #3/Gc:273@C #3/Gc:274@N reasonable false
    29195 
    29196 Created 0 bonds 
    29197 
    29198 > bond #3/Gc:274@C #3/Gc:275@N reasonable false
    29199 
    29200 Created 0 bonds 
    29201 
    29202 > bond #3/Gc:275@C #3/Gc:276@N reasonable false
    29203 
    29204 Created 0 bonds 
    29205 
    29206 > bond #3/Gc:276@C #3/Gc:277@N reasonable false
    29207 
    29208 Created 0 bonds 
    29209 
    29210 > bond #3/Gc:277@C #3/Gc:278@N reasonable false
    29211 
    29212 Created 0 bonds 
    29213 
    29214 > bond #3/Gc:278@C #3/Gc:279@N reasonable false
    29215 
    29216 Created 0 bonds 
    29217 
    29218 > bond #3/Gc:87@C #3/Gc:88@N reasonable false
    29219 
    29220 Created 0 bonds 
    29221 
    29222 > bond #3/Gc:88@C #3/Gc:89@N reasonable false
    29223 
    29224 Created 0 bonds 
    29225 
    29226 > bond #3/Gc:89@C #3/Gc:90@N reasonable false
    29227 
    29228 Created 0 bonds 
    29229 
    29230 > bond #3/Gc:90@C #3/Gc:91@N reasonable false
    29231 
    29232 Created 0 bonds 
    29233 
    29234 > bond #3/Gc:91@C #3/Gc:92@N reasonable false
    29235 
    29236 Created 0 bonds 
    29237 
    29238 > bond #3/Gc:92@C #3/Gc:93@N reasonable false
    29239 
    29240 Created 0 bonds 
    29241 
    29242 > bond #3/Gc:93@C #3/Gc:94@N reasonable false
    29243 
    29244 Created 0 bonds 
    29245 
    29246 > bond #3/Gc:94@C #3/Gc:95@N reasonable false
    29247 
    29248 Created 0 bonds 
    29249 
    29250 > bond #3/Gc:95@C #3/Gc:96@N reasonable false
    29251 
    29252 Created 0 bonds 
    29253 
    29254 > bond #3/Gc:96@C #3/Gc:97@N reasonable false
    29255 
    29256 Created 0 bonds 
    29257 
    29258 > bond #3/Gc:97@C #3/Gc:98@N reasonable false
    29259 
    29260 Created 0 bonds 
    29261 
    29262 > bond #3/Gc:98@C #3/Gc:99@N reasonable false
    29263 
    29264 Created 0 bonds 
    29265 
    29266 > bond #3/Gc:99@C #3/Gc:100@N reasonable false
    29267 
    29268 Created 0 bonds 
    29269 
    29270 > bond #3/Gc:100@C #3/Gc:101@N reasonable false
    29271 
    29272 Created 0 bonds 
    29273 
    29274 > bond #3/Gc:101@C #3/Gc:102@N reasonable false
    29275 
    29276 Created 0 bonds 
    29277 
    29278 > bond #3/Gc:102@C #3/Gc:103@N reasonable false
    29279 
    29280 Created 0 bonds 
    29281 
    29282 > bond #3/Gc:103@C #3/Gc:104@N reasonable false
    29283 
    29284 Created 0 bonds 
    29285 
    29286 > bond #3/Gc:104@C #3/Gc:105@N reasonable false
    29287 
    29288 Created 0 bonds 
    29289 
    29290 > bond #3/Gc:105@C #3/Gc:106@N reasonable false
    29291 
    29292 Created 0 bonds 
    29293 
    29294 > bond #3/Gc:106@C #3/Gc:107@N reasonable false
    29295 
    29296 Created 0 bonds 
    29297 
    29298 > bond #3/Gc:107@C #3/Gc:108@N reasonable false
    29299 
    29300 Created 1 bond 
    29301 
    29302 > bond #3/Gc:108@C #3/Gc:109@N reasonable false
    29303 
    29304 Created 0 bonds 
    29305 
    29306 > bond #3/Gc:109@C #3/Gc:110@N reasonable false
    29307 
    29308 Created 0 bonds 
    29309 
    29310 > bond #3/Gc:110@C #3/Gc:111@N reasonable false
    29311 
    29312 Created 0 bonds 
    29313 
    29314 > bond #3/Gc:111@C #3/Gc:112@N reasonable false
    29315 
    29316 Created 0 bonds 
    29317 
    29318 > bond #3/Gc:112@C #3/Gc:113@N reasonable false
    29319 
    29320 Created 0 bonds 
    29321 
    29322 > bond #3/Gc:113@C #3/Gc:114@N reasonable false
    29323 
    29324 Created 0 bonds 
    29325 
    29326 > bond #3/Gc:114@C #3/Gc:115@N reasonable false
    29327 
    29328 Created 0 bonds 
    29329 
    29330 > bond #3/Gc:115@C #3/Gc:116@N reasonable false
    29331 
    29332 Created 0 bonds 
    29333 
    29334 > bond #3/Gc:116@C #3/Gc:117@N reasonable false
    29335 
    29336 Created 0 bonds 
    29337 
    29338 > bond #3/Gc:117@C #3/Gc:118@N reasonable false
    29339 
    29340 Created 0 bonds 
    29341 
    29342 > bond #3/Gc:118@C #3/Gc:119@N reasonable false
    29343 
    29344 Created 0 bonds 
    29345 
    29346 > bond #3/Gc:119@C #3/Gc:120@N reasonable false
    29347 
    29348 Created 0 bonds 
    29349 
    29350 > bond #3/Gc:120@C #3/Gc:121@N reasonable false
    29351 
    29352 Created 0 bonds 
    29353 
    29354 > bond #3/Gc:121@C #3/Gc:122@N reasonable false
    29355 
    29356 Created 0 bonds 
    29357 
    29358 > bond #3/Gc:122@C #3/Gc:123@N reasonable false
    29359 
    29360 Created 0 bonds 
    29361 
    29362 > bond #3/Gc:123@C #3/Gc:124@N reasonable false
    29363 
    29364 Created 0 bonds 
    29365 
    29366 > bond #3/Gc:124@C #3/Gc:125@N reasonable false
    29367 
    29368 Created 0 bonds 
    29369 
    29370 > bond #3/Gc:125@C #3/Gc:126@N reasonable false
    29371 
    29372 Created 0 bonds 
    29373 
    29374 > bond #3/Gc:126@C #3/Gc:127@N reasonable false
    29375 
    29376 Created 0 bonds 
    29377 
    29378 > bond #3/Gc:127@C #3/Gc:128@N reasonable false
    29379 
    29380 Created 0 bonds 
    29381 
    29382 > bond #3/Gc:128@C #3/Gc:129@N reasonable false
    29383 
    29384 Created 0 bonds 
    29385 
    29386 > bond #3/Gc:129@C #3/Gc:130@N reasonable false
    29387 
    29388 Created 0 bonds 
    29389 
    29390 > bond #3/Gc:130@C #3/Gc:131@N reasonable false
    29391 
    29392 Created 0 bonds 
    29393 
    29394 > bond #3/Gc:131@C #3/Gc:132@N reasonable false
    29395 
    29396 Created 0 bonds 
    29397 
    29398 > bond #3/Gc:132@C #3/Gc:133@N reasonable false
    29399 
    29400 Created 0 bonds 
    29401 
    29402 > bond #3/Gc:133@C #3/Gc:134@N reasonable false
    29403 
    29404 Created 0 bonds 
    29405 
    29406 > bond #3/Gc:134@C #3/Gc:135@N reasonable false
    29407 
    29408 Created 0 bonds 
    29409 
    29410 > bond #3/Gc:135@C #3/Gc:136@N reasonable false
    29411 
    29412 Created 0 bonds 
    29413 
    29414 > bond #3/Gc:136@C #3/Gc:137@N reasonable false
    29415 
    29416 Created 0 bonds 
    29417 
    29418 > bond #3/Gc:137@C #3/Gc:138@N reasonable false
    29419 
    29420 Created 0 bonds 
    29421 
    29422 > bond #3/Gc:138@C #3/Gc:139@N reasonable false
    29423 
    29424 Created 0 bonds 
    29425 
    29426 > bond #3/Gc:139@C #3/Gc:140@N reasonable false
    29427 
    29428 Created 0 bonds 
    29429 
    29430 > bond #3/Gc:140@C #3/Gc:141@N reasonable false
    29431 
    29432 Created 0 bonds 
    29433 
    29434 > bond #3/Gc:141@C #3/Gc:142@N reasonable false
    29435 
    29436 Created 0 bonds 
    29437 
    29438 > bond #3/Gc:142@C #3/Gc:143@N reasonable false
    29439 
    29440 Created 0 bonds 
    29441 
    29442 > bond #3/Gc:143@C #3/Gc:144@N reasonable false
    29443 
    29444 Created 0 bonds 
    29445 
    29446 > bond #3/Gc:144@C #3/Gc:145@N reasonable false
    29447 
    29448 Created 0 bonds 
    29449 
    29450 > bond #3/Gc:145@C #3/Gc:146@N reasonable false
    29451 
    29452 Created 0 bonds 
    29453 
    29454 > bond #3/Gc:146@C #3/Gc:147@N reasonable false
    29455 
    29456 Created 0 bonds 
    29457 
    29458 > bond #3/Gc:147@C #3/Gc:148@N reasonable false
    29459 
    29460 Created 0 bonds 
    29461 
    29462 > bond #3/Gc:148@C #3/Gc:149@N reasonable false
    29463 
    29464 Created 0 bonds 
    29465 
    29466 > bond #3/Gc:149@C #3/Gc:150@N reasonable false
    29467 
    29468 Created 0 bonds 
    29469 
    29470 > bond #3/Gc:150@C #3/Gc:151@N reasonable false
    29471 
    29472 Created 0 bonds 
    29473 
    29474 > bond #3/Gc:151@C #3/Gc:152@N reasonable false
    29475 
    29476 Created 0 bonds 
    29477 
    29478 > bond #3/Gc:152@C #3/Gc:153@N reasonable false
    29479 
    29480 Created 0 bonds 
    29481 
    29482 > bond #3/Gc:153@C #3/Gc:154@N reasonable false
    29483 
    29484 Created 0 bonds 
    29485 
    29486 > bond #3/Gc:154@C #3/Gc:155@N reasonable false
    29487 
    29488 Created 0 bonds 
    29489 
    29490 > bond #3/Gc:155@C #3/Gc:156@N reasonable false
    29491 
    29492 Created 0 bonds 
    29493 
    29494 > bond #3/Gc:156@C #3/Gc:157@N reasonable false
    29495 
    29496 Created 0 bonds 
    29497 
    29498 > bond #3/Gc:157@C #3/Gc:158@N reasonable false
    29499 
    29500 Created 0 bonds 
    29501 
    29502 > bond #3/Gc:158@C #3/Gc:159@N reasonable false
    29503 
    29504 Created 0 bonds 
    29505 
    29506 > bond #3/Gc:159@C #3/Gc:160@N reasonable false
    29507 
    29508 Created 0 bonds 
    29509 
    29510 > bond #3/Gc:160@C #3/Gc:161@N reasonable false
    29511 
    29512 Created 0 bonds 
    29513 
    29514 > bond #3/Gc:161@C #3/Gc:162@N reasonable false
    29515 
    29516 Created 0 bonds 
    29517 
    29518 > bond #3/Gc:162@C #3/Gc:163@N reasonable false
    29519 
    29520 Created 0 bonds 
    29521 
    29522 > bond #3/Gc:163@C #3/Gc:164@N reasonable false
    29523 
    29524 Created 0 bonds 
    29525 
    29526 > bond #3/Gc:164@C #3/Gc:165@N reasonable false
    29527 
    29528 Created 0 bonds 
    29529 
    29530 > bond #3/Gc:165@C #3/Gc:166@N reasonable false
    29531 
    29532 Created 0 bonds 
    29533 
    29534 > bond #3/Gc:166@C #3/Gc:167@N reasonable false
    29535 
    29536 Created 0 bonds 
    29537 
    29538 > bond #3/Gc:167@C #3/Gc:168@N reasonable false
    29539 
    29540 Created 0 bonds 
    29541 
    29542 > bond #3/Gc:168@C #3/Gc:169@N reasonable false
    29543 
    29544 Created 0 bonds 
    29545 
    29546 > bond #3/Gc:169@C #3/Gc:170@N reasonable false
    29547 
    29548 Created 0 bonds 
    29549 
    29550 > bond #3/Gc:170@C #3/Gc:171@N reasonable false
    29551 
    29552 Created 0 bonds 
    29553 
    29554 > bond #3/Gc:171@C #3/Gc:172@N reasonable false
    29555 
    29556 Created 0 bonds 
    29557 
    29558 > bond #3/Gc:172@C #3/Gc:173@N reasonable false
    29559 
    29560 Created 0 bonds 
    29561 
    29562 > bond #3/Gc:173@C #3/Gc:174@N reasonable false
    29563 
    29564 Created 0 bonds 
    29565 
    29566 > bond #3/Gc:174@C #3/Gc:175@N reasonable false
    29567 
    29568 Created 0 bonds 
    29569 
    29570 > bond #3/Gc:175@C #3/Gc:176@N reasonable false
    29571 
    29572 Created 0 bonds 
    29573 
    29574 > bond #3/Gc:176@C #3/Gc:177@N reasonable false
    29575 
    29576 Created 0 bonds 
    29577 
    29578 > bond #3/Gc:177@C #3/Gc:178@N reasonable false
    29579 
    29580 Created 0 bonds 
    29581 
    29582 > bond #3/Gc:178@C #3/Gc:179@N reasonable false
    29583 
    29584 Created 0 bonds 
    29585 
    29586 > bond #3/Gc:179@C #3/Gc:180@N reasonable false
    29587 
    29588 Created 0 bonds 
    29589 
    29590 > bond #3/Gc:180@C #3/Gc:181@N reasonable false
    29591 
    29592 Created 0 bonds 
    29593 
    29594 > bond #3/Gc:181@C #3/Gc:182@N reasonable false
    29595 
    29596 Created 0 bonds 
    29597 
    29598 > bond #3/Gc:182@C #3/Gc:183@N reasonable false
    29599 
    29600 Created 0 bonds 
    29601 
    29602 > bond #3/Gc:183@C #3/Gc:184@N reasonable false
    29603 
    29604 Created 0 bonds 
    29605 
    29606 > bond #3/Gc:184@C #3/Gc:185@N reasonable false
    29607 
    29608 Created 0 bonds 
    29609 
    29610 > bond #3/Gc:185@C #3/Gc:186@N reasonable false
    29611 
    29612 Created 0 bonds 
    29613 
    29614 > bond #3/Gc:186@C #3/Gc:187@N reasonable false
    29615 
    29616 Created 0 bonds 
    29617 
    29618 > bond #3/Gc:187@C #3/Gc:188@N reasonable false
    29619 
    29620 Created 0 bonds 
    29621 
    29622 > bond #3/Gc:188@C #3/Gc:189@N reasonable false
    29623 
    29624 Created 0 bonds 
    29625 
    29626 > bond #3/Gc:189@C #3/Gc:190@N reasonable false
    29627 
    29628 Created 0 bonds 
    29629 
    29630 > bond #3/Gc:190@C #3/Gc:191@N reasonable false
    29631 
    29632 Created 0 bonds 
    29633 
    29634 > bond #3/Gc:191@C #3/Gc:192@N reasonable false
    29635 
    29636 Created 0 bonds 
    29637 
    29638 > bond #3/Gc:192@C #3/Gc:193@N reasonable false
    29639 
    29640 Created 0 bonds 
    29641 
    29642 > bond #3/Gc:193@C #3/Gc:194@N reasonable false
    29643 
    29644 Created 0 bonds 
    29645 
    29646 > bond #3/Gc:194@C #3/Gc:195@N reasonable false
    29647 
    29648 Created 0 bonds 
    29649 
    29650 > bond #3/Gc:195@C #3/Gc:196@N reasonable false
    29651 
    29652 Created 0 bonds 
    29653 
    29654 > bond #3/Gc:196@C #3/Gc:197@N reasonable false
    29655 
    29656 Created 0 bonds 
    29657 
    29658 > bond #3/Gc:197@C #3/Gc:198@N reasonable false
    29659 
    29660 Created 0 bonds 
    29661 
    29662 > bond #3/Gc:198@C #3/Gc:199@N reasonable false
    29663 
    29664 Created 0 bonds 
    29665 
    29666 > bond #3/Gc:199@C #3/Gc:200@N reasonable false
    29667 
    29668 Created 0 bonds 
    29669 
    29670 > bond #3/Gc:200@C #3/Gc:201@N reasonable false
    29671 
    29672 Created 0 bonds 
    29673 
    29674 > bond #3/Gc:201@C #3/Gc:202@N reasonable false
    29675 
    29676 Created 0 bonds 
    29677 
    29678 > bond #3/Gc:202@C #3/Gc:203@N reasonable false
    29679 
    29680 Created 0 bonds 
    29681 
    29682 > bond #3/Gc:203@C #3/Gc:204@N reasonable false
    29683 
    29684 Created 0 bonds 
    29685 
    29686 > bond #3/Gc:204@C #3/Gc:205@N reasonable false
    29687 
    29688 Created 0 bonds 
    29689 
    29690 > bond #3/Gc:205@C #3/Gc:206@N reasonable false
    29691 
    29692 Created 0 bonds 
    29693 
    29694 > bond #3/Gc:206@C #3/Gc:207@N reasonable false
    29695 
    29696 Created 0 bonds 
    29697 
    29698 > bond #3/Gc:207@C #3/Gc:208@N reasonable false
    29699 
    29700 Created 0 bonds 
    29701 
    29702 > bond #3/Gc:208@C #3/Gc:209@N reasonable false
    29703 
    29704 Created 0 bonds 
    29705 
    29706 > bond #3/Gc:209@C #3/Gc:210@N reasonable false
    29707 
    29708 Created 0 bonds 
    29709 
    29710 > bond #3/Gc:210@C #3/Gc:211@N reasonable false
    29711 
    29712 Created 0 bonds 
    29713 
    29714 > bond #3/Gc:211@C #3/Gc:212@N reasonable false
    29715 
    29716 Created 0 bonds 
    29717 
    29718 > bond #3/Gc:212@C #3/Gc:213@N reasonable false
    29719 
    29720 Created 0 bonds 
    29721 
    29722 > bond #3/Gc:213@C #3/Gc:214@N reasonable false
    29723 
    29724 Created 0 bonds 
    29725 
    29726 > bond #3/Gc:214@C #3/Gc:215@N reasonable false
    29727 
    29728 Created 0 bonds 
    29729 
    29730 > bond #3/Gc:215@C #3/Gc:216@N reasonable false
    29731 
    29732 Created 0 bonds 
    29733 
    29734 > bond #3/Gc:216@C #3/Gc:217@N reasonable false
    29735 
    29736 Created 0 bonds 
    29737 
    29738 > bond #3/Gc:217@C #3/Gc:218@N reasonable false
    29739 
    29740 Created 0 bonds 
    29741 
    29742 > bond #3/Gc:218@C #3/Gc:219@N reasonable false
    29743 
    29744 Created 0 bonds 
    29745 
    29746 > bond #3/Gc:219@C #3/Gc:220@N reasonable false
    29747 
    29748 Created 0 bonds 
    29749 
    29750 > bond #3/Gc:220@C #3/Gc:221@N reasonable false
    29751 
    29752 Created 0 bonds 
    29753 
    29754 > bond #3/Gc:221@C #3/Gc:222@N reasonable false
    29755 
    29756 Created 0 bonds 
    29757 
    29758 > bond #3/Gc:222@C #3/Gc:223@N reasonable false
    29759 
    29760 Created 0 bonds 
    29761 
    29762 > bond #3/Gc:223@C #3/Gc:224@N reasonable false
    29763 
    29764 Created 0 bonds 
    29765 
    29766 > bond #3/Gc:224@C #3/Gc:225@N reasonable false
    29767 
    29768 Created 0 bonds 
    29769 
    29770 > bond #3/Gc:225@C #3/Gc:226@N reasonable false
    29771 
    29772 Created 0 bonds 
    29773 
    29774 > bond #3/Gc:226@C #3/Gc:227@N reasonable false
    29775 
    29776 Created 0 bonds 
    29777 
    29778 > bond #3/Gc:227@C #3/Gc:228@N reasonable false
    29779 
    29780 Created 0 bonds 
    29781 
    29782 > bond #3/Gc:228@C #3/Gc:229@N reasonable false
    29783 
    29784 Created 0 bonds 
    29785 
    29786 > bond #3/Gc:229@C #3/Gc:230@N reasonable false
    29787 
    29788 Created 0 bonds 
    29789 
    29790 > bond #3/Gc:230@C #3/Gc:231@N reasonable false
    29791 
    29792 Created 0 bonds 
    29793 
    29794 > bond #3/Gc:231@C #3/Gc:232@N reasonable false
    29795 
    29796 Created 0 bonds 
    29797 
    29798 > bond #3/Gc:232@C #3/Gc:233@N reasonable false
    29799 
    29800 Created 0 bonds 
    29801 
    29802 > bond #3/Gc:233@C #3/Gc:234@N reasonable false
    29803 
    29804 Created 0 bonds 
    29805 
    29806 > bond #3/Gc:234@C #3/Gc:235@N reasonable false
    29807 
    29808 Created 0 bonds 
    29809 
    29810 > bond #3/Gc:235@C #3/Gc:236@N reasonable false
    29811 
    29812 Created 0 bonds 
    29813 
    29814 > bond #3/Gc:236@C #3/Gc:237@N reasonable false
    29815 
    29816 Created 0 bonds 
    29817 
    29818 > bond #3/Gc:237@C #3/Gc:238@N reasonable false
    29819 
    29820 Created 0 bonds 
    29821 
    29822 > bond #3/Gc:238@C #3/Gc:239@N reasonable false
    29823 
    29824 Created 1 bond 
    29825 
    29826 > bond #3/Gc:239@C #3/Gc:240@N reasonable false
    29827 
    29828 Created 0 bonds 
    29829 
    29830 > bond #3/Gc:240@C #3/Gc:241@N reasonable false
    29831 
    29832 Created 0 bonds 
    29833 
    29834 > bond #3/Gc:241@C #3/Gc:242@N reasonable false
    29835 
    29836 Created 0 bonds 
    29837 
    29838 > bond #3/Gc:242@C #3/Gc:243@N reasonable false
    29839 
    29840 Created 0 bonds 
    29841 
    29842 > bond #3/Gc:243@C #3/Gc:244@N reasonable false
    29843 
    29844 Created 0 bonds 
    29845 
    29846 > bond #3/Gc:244@C #3/Gc:245@N reasonable false
    29847 
    29848 Created 0 bonds 
    29849 
    29850 > bond #3/Gc:245@C #3/Gc:246@N reasonable false
    29851 
    29852 Created 0 bonds 
    29853 
    29854 > bond #3/Gc:246@C #3/Gc:247@N reasonable false
    29855 
    29856 Created 0 bonds 
    29857 
    29858 > bond #3/Gc:247@C #3/Gc:248@N reasonable false
    29859 
    29860 Created 0 bonds 
    29861 
    29862 > bond #3/Gc:248@C #3/Gc:249@N reasonable false
    29863 
    29864 Created 0 bonds 
    29865 
    29866 > bond #3/Gc:249@C #3/Gc:250@N reasonable false
    29867 
    29868 Created 1 bond 
    29869 
    29870 > bond #3/Gc:10@C #3/Gc:11@N reasonable false
    29871 
    29872 Created 0 bonds 
    29873 
    29874 > bond #3/Gc:11@C #3/Gc:12@N reasonable false
    29875 
    29876 Created 0 bonds 
    29877 
    29878 > bond #3/Gc:12@C #3/Gc:13@N reasonable false
    29879 
    29880 Created 0 bonds 
    29881 
    29882 > bond #3/Gc:13@C #3/Gc:14@N reasonable false
    29883 
    29884 Created 0 bonds 
    29885 
    29886 > bond #3/Gc:14@C #3/Gc:15@N reasonable false
    29887 
    29888 Created 0 bonds 
    29889 
    29890 > bond #3/Gc:15@C #3/Gc:16@N reasonable false
    29891 
    29892 Created 0 bonds 
    29893 
    29894 > bond #3/Gc:16@C #3/Gc:17@N reasonable false
    29895 
    29896 Created 0 bonds 
    29897 
    29898 > bond #3/Gc:17@C #3/Gc:18@N reasonable false
    29899 
    29900 Created 1 bond 
    29901 
    29902 > bond #3/Gc:338@C #3/Gc:339@N reasonable false
    29903 
    29904 Created 0 bonds 
    29905 
    29906 > bond #3/Gc:339@C #3/Gc:340@N reasonable false
    29907 
    29908 Created 0 bonds 
    29909 
    29910 > bond #3/Gc:340@C #3/Gc:341@N reasonable false
    29911 
    29912 Created 0 bonds 
    29913 
    29914 > bond #3/Gc:341@C #3/Gc:342@N reasonable false
    29915 
    29916 Created 0 bonds 
    29917 
    29918 > bond #3/Gc:342@C #3/Gc:343@N reasonable false
    29919 
    29920 Created 0 bonds 
    29921 
    29922 > bond #3/Gc:343@C #3/Gc:344@N reasonable false
    29923 
    29924 Created 0 bonds 
    29925 
    29926 > bond #3/Gc:344@C #3/Gc:345@N reasonable false
    29927 
    29928 Created 0 bonds 
    29929 
    29930 > bond #3/Gc:345@C #3/Gc:346@N reasonable false
    29931 
    29932 Created 0 bonds 
    29933 
    29934 > bond #3/Gc:346@C #3/Gc:347@N reasonable false
    29935 
    29936 Created 0 bonds 
    29937 
    29938 > bond #3/Gc:347@C #3/Gc:348@N reasonable false
    29939 
    29940 Created 0 bonds 
    29941 
    29942 > bond #3/Gc:348@C #3/Gc:349@N reasonable false
    29943 
    29944 Created 0 bonds 
    29945 
    29946 > bond #3/Gc:349@C #3/Gc:350@N reasonable false
    29947 
    29948 Created 0 bonds 
    29949 
    29950 > bond #3/Gc:350@C #3/Gc:351@N reasonable false
    29951 
    29952 Created 0 bonds 
    29953 
    29954 > bond #3/Gc:351@C #3/Gc:352@N reasonable false
    29955 
    29956 Created 0 bonds 
    29957 
    29958 > bond #3/Gc:352@C #3/Gc:353@N reasonable false
    29959 
    29960 Created 0 bonds 
    29961 
    29962 > bond #3/Gc:353@C #3/Gc:354@N reasonable false
    29963 
    29964 Created 0 bonds 
    29965 
    29966 > bond #3/Gc:354@C #3/Gc:355@N reasonable false
    29967 
    29968 Created 0 bonds 
    29969 
    29970 > bond #3/Gc:355@C #3/Gc:356@N reasonable false
    29971 
    29972 Created 0 bonds 
    29973 
    29974 > bond #3/Gc:356@C #3/Gc:357@N reasonable false
    29975 
    29976 Created 0 bonds 
    29977 
    29978 > bond #3/Gc:357@C #3/Gc:358@N reasonable false
    29979 
    29980 Created 0 bonds 
    29981 
    29982 > bond #3/Gc:358@C #3/Gc:359@N reasonable false
    29983 
    29984 Created 0 bonds 
    29985 
    29986 > bond #3/Gc:359@C #3/Gc:360@N reasonable false
    29987 
    29988 Created 0 bonds 
    29989 
    29990 > bond #3/Gc:360@C #3/Gc:361@N reasonable false
    29991 
    29992 Created 0 bonds 
    29993 
    29994 > bond #3/Gc:361@C #3/Gc:362@N reasonable false
    29995 
    29996 Created 0 bonds 
    29997 
    29998 > bond #3/Gc:362@C #3/Gc:363@N reasonable false
    29999 
    30000 Created 0 bonds 
    30001 
    30002 > bond #3/Gc:363@C #3/Gc:364@N reasonable false
    30003 
    30004 Created 0 bonds 
    30005 
    30006 > bond #3/Gc:364@C #3/Gc:365@N reasonable false
    30007 
    30008 Created 0 bonds 
    30009 
    30010 > bond #3/Gc:365@C #3/Gc:366@N reasonable false
    30011 
    30012 Created 0 bonds 
    30013 
    30014 > bond #3/Gc:366@C #3/Gc:367@N reasonable false
    30015 
    30016 Created 0 bonds 
    30017 
    30018 > bond #3/Gc:367@C #3/Gc:368@N reasonable false
    30019 
    30020 Created 0 bonds 
    30021 
    30022 > bond #3/Gc:368@C #3/Gc:369@N reasonable false
    30023 
    30024 Created 0 bonds 
    30025 
    30026 > bond #3/Gc:369@C #3/Gc:370@N reasonable false
    30027 
    30028 Created 0 bonds 
    30029 
    30030 > bond #3/Gc:370@C #3/Gc:371@N reasonable false
    30031 
    30032 Created 0 bonds 
    30033 
    30034 > bond #3/Gc:371@C #3/Gc:372@N reasonable false
    30035 
    30036 Created 0 bonds 
    30037 
    30038 > bond #3/Gc:372@C #3/Gc:373@N reasonable false
    30039 
    30040 Created 0 bonds 
    30041 
    30042 > bond #3/Gc:373@C #3/Gc:374@N reasonable false
    30043 
    30044 Created 0 bonds 
    30045 
    30046 > bond #3/Gc:374@C #3/Gc:375@N reasonable false
    30047 
    30048 Created 0 bonds 
    30049 
    30050 > bond #3/Gc:375@C #3/Gc:376@N reasonable false
    30051 
    30052 Created 0 bonds 
    30053 
    30054 > bond #3/Gc:376@C #3/Gc:377@N reasonable false
    30055 
    30056 Created 0 bonds 
    30057 
    30058 > bond #3/Gc:377@C #3/Gc:378@N reasonable false
    30059 
    30060 Created 0 bonds 
    30061 
    30062 > bond #3/Gc:378@C #3/Gc:379@N reasonable false
    30063 
    30064 Created 0 bonds 
    30065 
    30066 > bond #3/Gc:379@C #3/Gc:380@N reasonable false
    30067 
    30068 Created 0 bonds 
    30069 
    30070 > bond #3/Gc:380@C #3/Gc:381@N reasonable false
    30071 
    30072 Created 0 bonds 
    30073 
    30074 > bond #3/Gc:381@C #3/Gc:382@N reasonable false
    30075 
    30076 Created 0 bonds 
    30077 
    30078 > bond #3/Gc:382@C #3/Gc:383@N reasonable false
    30079 
    30080 Created 0 bonds 
    30081 
    30082 > bond #3/Gc:383@C #3/Gc:384@N reasonable false
    30083 
    30084 Created 0 bonds 
    30085 
    30086 > bond #3/Gc:384@C #3/Gc:385@N reasonable false
    30087 
    30088 Created 0 bonds 
    30089 
    30090 > bond #3/Gc:385@C #3/Gc:386@N reasonable false
    30091 
    30092 Created 0 bonds 
    30093 
    30094 > bond #3/Gc:386@C #3/Gc:387@N reasonable false
    30095 
    30096 Created 0 bonds 
    30097 
    30098 > bond #3/Gc:387@C #3/Gc:388@N reasonable false
    30099 
    30100 Created 0 bonds 
    30101 
    30102 > bond #3/Gc:388@C #3/Gc:389@N reasonable false
    30103 
    30104 Created 0 bonds 
    30105 
    30106 > bond #3/Gc:389@C #3/Gc:390@N reasonable false
    30107 
    30108 Created 0 bonds 
    30109 
    30110 > bond #3/Gc:390@C #3/Gc:391@N reasonable false
    30111 
    30112 Created 0 bonds 
    30113 
    30114 > bond #3/Gc:391@C #3/Gc:392@N reasonable false
    30115 
    30116 Created 0 bonds 
    30117 
    30118 > bond #3/Gc:392@C #3/Gc:393@N reasonable false
    30119 
    30120 Created 0 bonds 
    30121 
    30122 > bond #3/Gc:393@C #3/Gc:394@N reasonable false
    30123 
    30124 Created 0 bonds 
    30125 
    30126 > bond #3/Gc:394@C #3/Gc:395@N reasonable false
    30127 
    30128 Created 0 bonds 
    30129 
    30130 > bond #3/Gc:395@C #3/Gc:396@N reasonable false
    30131 
    30132 Created 0 bonds 
    30133 
    30134 > bond #3/Gc:396@C #3/Gc:397@N reasonable false
    30135 
    30136 Created 0 bonds 
    30137 
    30138 > bond #3/Gc:397@C #3/Gc:398@N reasonable false
    30139 
    30140 Created 0 bonds 
    30141 
    30142 > bond #3/Gc:398@C #3/Gc:399@N reasonable false
    30143 
    30144 Created 0 bonds 
    30145 
    30146 > bond #3/Gc:399@C #3/Gc:400@N reasonable false
    30147 
    30148 Created 0 bonds 
    30149 
    30150 > bond #3/Gc:400@C #3/Gc:401@N reasonable false
    30151 
    30152 Created 0 bonds 
    30153 
    30154 > bond #3/Gc:401@C #3/Gc:402@N reasonable false
    30155 
    30156 Created 0 bonds 
    30157 
    30158 > bond #3/Gc:402@C #3/Gc:403@N reasonable false
    30159 
    30160 Created 0 bonds 
    30161 
    30162 > bond #3/Gc:403@C #3/Gc:404@N reasonable false
    30163 
    30164 Created 0 bonds 
    30165 
    30166 > bond #3/Gc:404@C #3/Gc:405@N reasonable false
    30167 
    30168 Created 0 bonds 
    30169 
    30170 > bond #3/Gc:405@C #3/Gc:406@N reasonable false
    30171 
    30172 Created 0 bonds 
    30173 
    30174 > bond #3/Gc:406@C #3/Gc:407@N reasonable false
    30175 
    30176 Created 0 bonds 
    30177 
    30178 > bond #3/Gc:407@C #3/Gc:408@N reasonable false
    30179 
    30180 Created 0 bonds 
    30181 
    30182 > bond #3/Gc:408@C #3/Gc:409@N reasonable false
    30183 
    30184 Created 0 bonds 
    30185 
    30186 > bond #3/Gc:409@C #3/Gc:410@N reasonable false
    30187 
    30188 Created 0 bonds 
    30189 
    30190 > bond #3/Gc:410@C #3/Gc:411@N reasonable false
    30191 
    30192 Created 0 bonds 
    30193 
    30194 > bond #3/Gc:411@C #3/Gc:412@N reasonable false
    30195 
    30196 Created 0 bonds 
    30197 
    30198 > bond #3/Gc:412@C #3/Gc:413@N reasonable false
    30199 
    30200 Created 0 bonds 
    30201 
    30202 > bond #3/Gc:413@C #3/Gc:414@N reasonable false
    30203 
    30204 Created 0 bonds 
    30205 
    30206 > bond #3/Gc:414@C #3/Gc:415@N reasonable false
    30207 
    30208 Created 0 bonds 
    30209 
    30210 > bond #3/Gc:415@C #3/Gc:416@N reasonable false
    30211 
    30212 Created 0 bonds 
    30213 
    30214 > bond #3/Gc:416@C #3/Gc:417@N reasonable false
    30215 
    30216 Created 0 bonds 
    30217 
    30218 > bond #3/Gc:417@C #3/Gc:418@N reasonable false
    30219 
    30220 Created 0 bonds 
    30221 
    30222 > bond #3/Gc:418@C #3/Gc:419@N reasonable false
    30223 
    30224 Created 0 bonds 
    30225 
    30226 > bond #3/Gc:419@C #3/Gc:420@N reasonable false
    30227 
    30228 Created 0 bonds 
    30229 
    30230 > bond #3/Gc:420@C #3/Gc:421@N reasonable false
    30231 
    30232 Created 0 bonds 
    30233 
    30234 > bond #3/Gc:421@C #3/Gc:422@N reasonable false
    30235 
    30236 Created 0 bonds 
    30237 
    30238 > bond #3/Gc:422@C #3/Gc:423@N reasonable false
    30239 
    30240 Created 0 bonds 
    30241 
    30242 > bond #3/Gc:423@C #3/Gc:424@N reasonable false
    30243 
    30244 Created 0 bonds 
    30245 
    30246 > bond #3/Gc:424@C #3/Gc:425@N reasonable false
    30247 
    30248 Created 0 bonds 
    30249 
    30250 > bond #3/Gc:425@C #3/Gc:426@N reasonable false
    30251 
    30252 Created 0 bonds 
    30253 
    30254 > bond #3/Gc:426@C #3/Gc:427@N reasonable false
    30255 
    30256 Created 0 bonds 
    30257 
    30258 > bond #3/Gc:427@C #3/Gc:428@N reasonable false
    30259 
    30260 Created 0 bonds 
    30261 
    30262 > bond #3/Gc:428@C #3/Gc:429@N reasonable false
    30263 
    30264 Created 0 bonds 
    30265 
    30266 > bond #3/Gc:429@C #3/Gc:430@N reasonable false
    30267 
    30268 Created 0 bonds 
    30269 
    30270 > bond #3/Gc:430@C #3/Gc:431@N reasonable false
    30271 
    30272 Created 0 bonds 
    30273 
    30274 > bond #3/Gc:431@C #3/Gc:432@N reasonable false
    30275 
    30276 Created 0 bonds 
    30277 
    30278 > bond #3/Gc:432@C #3/Gc:433@N reasonable false
    30279 
    30280 Created 0 bonds 
    30281 
    30282 > bond #3/Gc:433@C #3/Gc:434@N reasonable false
    30283 
    30284 Created 0 bonds 
    30285 
    30286 > bond #3/Gc:434@C #3/Gc:435@N reasonable false
    30287 
    30288 Created 0 bonds 
    30289 
    30290 > bond #3/Gc:435@C #3/Gc:436@N reasonable false
    30291 
    30292 Created 0 bonds 
    30293 
    30294 > bond #3/Gc:436@C #3/Gc:437@N reasonable false
    30295 
    30296 Created 0 bonds 
    30297 
    30298 > bond #3/Gc:437@C #3/Gc:438@N reasonable false
    30299 
    30300 Created 0 bonds 
    30301 
    30302 > bond #3/Gc:438@C #3/Gc:439@N reasonable false
    30303 
    30304 Created 0 bonds 
    30305 
    30306 > bond #3/Gc:439@C #3/Gc:440@N reasonable false
    30307 
    30308 Created 0 bonds 
    30309 
    30310 > bond #3/Gc:440@C #3/Gc:441@N reasonable false
    30311 
    30312 Created 0 bonds 
    30313 
    30314 > bond #3/Gc:441@C #3/Gc:442@N reasonable false
    30315 
    30316 Created 0 bonds 
    30317 
    30318 > bond #3/Gc:442@C #3/Gc:443@N reasonable false
    30319 
    30320 Created 0 bonds 
    30321 
    30322 > bond #3/Gc:443@C #3/Gc:444@N reasonable false
    30323 
    30324 Created 0 bonds 
    30325 
    30326 > bond #3/Gc:444@C #3/Gc:445@N reasonable false
    30327 
    30328 Created 0 bonds 
    30329 
    30330 > bond #3/Gc:445@C #3/Gc:446@N reasonable false
    30331 
    30332 Created 0 bonds 
    30333 
    30334 > bond #3/Gc:446@C #3/Gc:447@N reasonable false
    30335 
    30336 Created 0 bonds 
    30337 
    30338 > bond #3/Gc:447@C #3/Gc:448@N reasonable false
    30339 
    30340 Created 0 bonds 
    30341 
    30342 > bond #3/Gc:448@C #3/Gc:449@N reasonable false
    30343 
    30344 Created 0 bonds 
    30345 
    30346 > bond #3/Gc:449@C #3/Gc:450@N reasonable false
    30347 
    30348 Created 0 bonds 
    30349 
    30350 > bond #3/Gc:450@C #3/Gc:451@N reasonable false
    30351 
    30352 Created 0 bonds 
    30353 
    30354 > bond #3/Gc:451@C #3/Gc:452@N reasonable false
    30355 
    30356 Created 0 bonds 
    30357 
    30358 > bond #3/Gc:452@C #3/Gc:453@N reasonable false
    30359 
    30360 Created 0 bonds 
    30361 
    30362 > bond #3/Gc:453@C #3/Gc:454@N reasonable false
    30363 
    30364 Created 0 bonds 
    30365 
    30366 > bond #3/Gc:454@C #3/Gc:455@N reasonable false
    30367 
    30368 Created 0 bonds 
    30369 
    30370 > bond #3/Gc:455@C #3/Gc:456@N reasonable false
    30371 
    30372 Created 0 bonds 
    30373 
    30374 > bond #3/Gc:456@C #3/Gc:457@N reasonable false
    30375 
    30376 Created 0 bonds 
    30377 
    30378 > bond #3/Gc:457@C #3/Gc:458@N reasonable false
    30379 
    30380 Created 0 bonds 
    30381 
    30382 > bond #3/Gc:458@C #3/Gc:459@N reasonable false
    30383 
    30384 Created 0 bonds 
    30385 
    30386 > bond #3/Gc:459@C #3/Gc:460@N reasonable false
    30387 
    30388 Created 0 bonds 
    30389 
    30390 > bond #3/Gc:460@C #3/Gc:461@N reasonable false
    30391 
    30392 Created 0 bonds 
    30393 
    30394 > bond #3/Gc:461@C #3/Gc:462@N reasonable false
    30395 
    30396 Created 0 bonds 
    30397 
    30398 > bond #3/Gc:462@C #3/Gc:463@N reasonable false
    30399 
    30400 Created 0 bonds 
    30401 
    30402 > bond #3/Gc:463@C #3/Gc:464@N reasonable false
    30403 
    30404 Created 0 bonds 
    30405 
    30406 > bond #3/Gc:464@C #3/Gc:465@N reasonable false
    30407 
    30408 Created 0 bonds 
    30409 
    30410 > bond #3/Gc:465@C #3/Gc:466@N reasonable false
    30411 
    30412 Created 0 bonds 
    30413 
    30414 > bond #3/Gc:466@C #3/Gc:467@N reasonable false
    30415 
    30416 Created 0 bonds 
    30417 
    30418 > bond #3/Gc:467@C #3/Gc:468@N reasonable false
    30419 
    30420 Created 0 bonds 
    30421 
    30422 > bond #3/Gc:468@C #3/Gc:469@N reasonable false
    30423 
    30424 Created 0 bonds 
    30425 
    30426 > bond #3/Gc:469@C #3/Gc:470@N reasonable false
    30427 
    30428 Created 1 bond 
    30429 
    30430 > bond #3/Gc:18@C #3/Gc:19@N reasonable false
    30431 
    30432 Created 0 bonds 
    30433 
    30434 > bond #3/Gc:19@C #3/Gc:20@N reasonable false
    30435 
    30436 Created 0 bonds 
    30437 
    30438 > bond #3/Gc:20@C #3/Gc:21@N reasonable false
    30439 
    30440 Created 0 bonds 
    30441 
    30442 > bond #3/Gc:21@C #3/Gc:22@N reasonable false
    30443 
    30444 Created 0 bonds 
    30445 
    30446 > bond #3/Gc:22@C #3/Gc:23@N reasonable false
    30447 
    30448 Created 0 bonds 
    30449 
    30450 > bond #3/Gc:23@C #3/Gc:24@N reasonable false
    30451 
    30452 Created 0 bonds 
    30453 
    30454 > bond #3/Gc:24@C #3/Gc:25@N reasonable false
    30455 
    30456 Created 0 bonds 
    30457 
    30458 > bond #3/Gc:25@C #3/Gc:26@N reasonable false
    30459 
    30460 Created 0 bonds 
    30461 
    30462 > bond #3/Gc:26@C #3/Gc:27@N reasonable false
    30463 
    30464 Created 0 bonds 
    30465 
    30466 > bond #3/Gc:27@C #3/Gc:28@N reasonable false
    30467 
    30468 Created 0 bonds 
    30469 
    30470 > bond #3/Gc:28@C #3/Gc:29@N reasonable false
    30471 
    30472 Created 0 bonds 
    30473 
    30474 > bond #3/Gc:29@C #3/Gc:30@N reasonable false
    30475 
    30476 Created 0 bonds 
    30477 
    30478 > bond #3/Gc:30@C #3/Gc:31@N reasonable false
    30479 
    30480 Created 1 bond 
    30481 
    30482 > bond #3/Gc:289@C #3/Gc:290@N reasonable false
    30483 
    30484 Created 0 bonds 
    30485 
    30486 > bond #3/Gc:290@C #3/Gc:291@N reasonable false
    30487 
    30488 Created 0 bonds 
    30489 
    30490 > bond #3/Gc:291@C #3/Gc:292@N reasonable false
    30491 
    30492 Created 0 bonds 
    30493 
    30494 > bond #3/Gc:292@C #3/Gc:293@N reasonable false
    30495 
    30496 Created 0 bonds 
    30497 
    30498 > bond #3/Gc:293@C #3/Gc:294@N reasonable false
    30499 
    30500 Created 0 bonds 
    30501 
    30502 > bond #3/Gc:294@C #3/Gc:295@N reasonable false
    30503 
    30504 Created 0 bonds 
    30505 
    30506 > bond #3/Gc:295@C #3/Gc:296@N reasonable false
    30507 
    30508 Created 0 bonds 
    30509 
    30510 > bond #3/Gc:296@C #3/Gc:297@N reasonable false
    30511 
    30512 Created 0 bonds 
    30513 
    30514 > bond #3/Gc:297@C #3/Gc:298@N reasonable false
    30515 
    30516 Created 0 bonds 
    30517 
    30518 > bond #3/Gc:298@C #3/Gc:299@N reasonable false
    30519 
    30520 Created 0 bonds 
    30521 
    30522 > bond #3/Gc:299@C #3/Gc:300@N reasonable false
    30523 
    30524 Created 0 bonds 
    30525 
    30526 > bond #3/Gc:300@C #3/Gc:301@N reasonable false
    30527 
    30528 Created 0 bonds 
    30529 
    30530 > bond #3/Gc:301@C #3/Gc:302@N reasonable false
    30531 
    30532 Created 0 bonds 
    30533 
    30534 > bond #3/Gc:302@C #3/Gc:303@N reasonable false
    30535 
    30536 Created 0 bonds 
    30537 
    30538 > bond #3/Gc:303@C #3/Gc:304@N reasonable false
    30539 
    30540 Created 0 bonds 
    30541 
    30542 > bond #3/Gc:304@C #3/Gc:305@N reasonable false
    30543 
    30544 Created 0 bonds 
    30545 
    30546 > bond #3/Gc:305@C #3/Gc:306@N reasonable false
    30547 
    30548 Created 0 bonds 
    30549 
    30550 > bond #3/Gc:306@C #3/Gc:307@N reasonable false
    30551 
    30552 Created 0 bonds 
    30553 
    30554 > bond #3/Gc:307@C #3/Gc:308@N reasonable false
    30555 
    30556 Created 0 bonds 
    30557 
    30558 > bond #3/Gc:308@C #3/Gc:309@N reasonable false
    30559 
    30560 Created 0 bonds 
    30561 
    30562 > bond #3/Gc:309@C #3/Gc:310@N reasonable false
    30563 
    30564 Created 0 bonds 
    30565 
    30566 > bond #3/Gc:310@C #3/Gc:311@N reasonable false
    30567 
    30568 Created 0 bonds 
    30569 
    30570 > bond #3/Gc:311@C #3/Gc:312@N reasonable false
    30571 
    30572 Created 0 bonds 
    30573 
    30574 > bond #3/Gc:282@C #3/Gc:283@N reasonable false
    30575 
    30576 Created 0 bonds 
    30577 
    30578 > bond #3/Gc:283@C #3/Gc:284@N reasonable false
    30579 
    30580 Created 0 bonds 
    30581 
    30582 > bond #3/Gc:284@C #3/Gc:285@N reasonable false
    30583 
    30584 Created 0 bonds 
    30585 
    30586 > bond #3/Gc:285@C #3/Gc:286@N reasonable false
    30587 
    30588 Created 0 bonds 
    30589 
    30590 > bond #3/Gc:286@C #3/Gc:287@N reasonable false
    30591 
    30592 Created 0 bonds 
    30593 
    30594 > bond #3/Gc:287@C #3/Gc:288@N reasonable false
    30595 
    30596 Created 0 bonds 
    30597 
    30598 > bond #3/Gc:288@C #3/Gc:289@N reasonable false
    30599 
    30600 Created 1 bond 
    30601 
    30602 > bond #3/Gc:328@C #3/Gc:329@N reasonable false
    30603 
    30604 Created 0 bonds 
    30605 
    30606 > bond #3/Gc:329@C #3/Gc:330@N reasonable false
    30607 
    30608 Created 0 bonds 
    30609 
    30610 > bond #3/Gc:330@C #3/Gc:331@N reasonable false
    30611 
    30612 Created 0 bonds 
    30613 
    30614 > bond #3/Gc:331@C #3/Gc:332@N reasonable false
    30615 
    30616 Created 0 bonds 
    30617 
    30618 > bond #3/Gc:332@C #3/Gc:333@N reasonable false
    30619 
    30620 Created 0 bonds 
    30621 
    30622 > bond #3/Gc:333@C #3/Gc:334@N reasonable false
    30623 
    30624 Created 0 bonds 
    30625 
    30626 > bond #3/Gc:334@C #3/Gc:335@N reasonable false
    30627 
    30628 Created 0 bonds 
    30629 
    30630 > bond #3/Gc:335@C #3/Gc:336@N reasonable false
    30631 
    30632 Created 0 bonds 
    30633 
    30634 > bond #3/Gc:336@C #3/Gc:337@N reasonable false
    30635 
    30636 Created 0 bonds 
    30637 
    30638 > bond #3/Gc:337@C #3/Gc:338@N reasonable false
    30639 
    30640 Created 1 bond 
    30641 
    30642 > bond #3/Gc:250@C #3/Gc:251@N reasonable false
    30643 
    30644 Created 0 bonds 
    30645 
    30646 > bond #3/Gc:251@C #3/Gc:252@N reasonable false
    30647 
    30648 Created 0 bonds 
    30649 
    30650 > bond #3/Gc:252@C #3/Gc:253@N reasonable false
    30651 
    30652 Created 1 bond 
    30653 
    30654 > bond #3/Gc:2@C #3/Gc:3@N reasonable false
    30655 
    30656 Created 0 bonds 
    30657 
    30658 > bond #3/Gc:3@C #3/Gc:4@N reasonable false
    30659 
    30660 Created 0 bonds 
    30661 
    30662 > bond #3/Gc:4@C #3/Gc:5@N reasonable false
    30663 
    30664 Created 0 bonds 
    30665 
    30666 > bond #3/Gc:5@C #3/Gc:6@N reasonable false
    30667 
    30668 Created 0 bonds 
    30669 
    30670 > bond #3/Gc:6@C #3/Gc:7@N reasonable false
    30671 
    30672 Created 0 bonds 
    30673 
    30674 > bond #3/Gc:7@C #3/Gc:8@N reasonable false
    30675 
    30676 Created 0 bonds 
    30677 
    30678 > swapaa #3/Gc:2 SER
    30679 
    30680 Using Dunbrack library 
    30681 mutadedModel #3/Gc GLY 2: phi none, psi -13.9 trans 
    30682 Applying SER rotamer (chi angles: 65.3) to mutadedModel #3/Gc SER 2 
    30683 
    30684 > color #3/Gc:2 yellow
    30685 
    30686 > swapaa #3/Gc:3 VAL
    30687 
    30688 Using Dunbrack library 
    30689 mutadedModel #3/Gc THR 3: phi 137.8, psi 96.1 trans 
    30690 Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/Gc VAL 3 
    30691 
    30692 > color #3/Gc:3 yellow
    30693 
    30694 > swapaa #3/Gc:4 SER
    30695 
    30696 Using Dunbrack library 
    30697 mutadedModel #3/Gc TYR 4: phi -56.4, psi -29.4 trans 
    30698 Applying SER rotamer (chi angles: 66.4) to mutadedModel #3/Gc SER 4 
    30699 
    30700 > color #3/Gc:4 yellow
    30701 
    30702 > swapaa #3/Gc:5 PHE
    30703 
    30704 Using Dunbrack library 
    30705 mutadedModel #3/Gc ALA 5: phi -62.2, psi -33.2 trans 
    30706 Applying PHE rotamer (chi angles: 75.0 67.5) to mutadedModel #3/Gc PHE 5 
    30707 
    30708 > color #3/Gc:5 yellow
    30709 
    30710 > swapaa #3/Gc:6 SER
    30711 
    30712 Using Dunbrack library 
    30713 mutadedModel #3/Gc ILE 6: phi -68.0, psi -38.1 trans 
    30714 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 6 
    30715 
    30716 > color #3/Gc:6 yellow
    30717 
    30718 > swapaa #3/Gc:7 THR
    30719 
    30720 Using Dunbrack library 
    30721 mutadedModel #3/Gc LEU 7: phi -71.5, psi -47.5 trans 
    30722 Applying THR rotamer (chi angles: -61.0) to mutadedModel #3/Gc THR 7 
    30723 
    30724 > color #3/Gc:7 yellow
    30725 
    30726 > swapaa #3/Gc:8 LEU
    30727 
    30728 Using Dunbrack library 
    30729 mutadedModel #3/Gc ILE 8: phi -82.2, psi none trans 
    30730 Applying LEU rotamer (chi angles: -64.7 174.5) to mutadedModel #3/Gc LEU 8 
    30731 
    30732 > color #3/Gc:8 yellow
    30733 
    30734 > swapaa #3/Gc:10 GLN
    30735 
    30736 Using Dunbrack library 
    30737 mutadedModel #3/Gc ARG 10: phi none, psi 135.2 trans 
    30738 Applying GLN rotamer (chi angles: -174.0 60.6 -124.1) to mutadedModel #3/Gc
    30739 GLN 10 
    30740 
    30741 > color #3/Gc:10 yellow
    30742 
    30743 > swapaa #3/Gc:11 ARG
    30744 
    30745 Using Dunbrack library 
    30746 mutadedModel #3/Gc ALA 11: phi -67.3, psi 156.4 trans 
    30747 Applying ARG rotamer (chi angles: 66.3 -176.8 -67.5 171.8) to mutadedModel
    30748 #3/Gc ARG 11 
    30749 
    30750 > color #3/Gc:11 yellow
    30751 
    30752 > swapaa #3/Gc:12 ALA
    30753 
    30754 Using Dunbrack library 
    30755 Swapping mutadedModel #3/Gc LYS 12 to ALA 
    30756 
    30757 > color #3/Gc:12 yellow
    30758 
    30759 > swapaa #3/Gc:13 ARG
    30760 
    30761 Using Dunbrack library 
    30762 mutadedModel #3/Gc ALA 13: phi -72.3, psi 110.9 trans 
    30763 Applying ARG rotamer (chi angles: -61.7 -67.2 -63.9 175.9) to mutadedModel
    30764 #3/Gc ARG 13 
    30765 
    30766 > color #3/Gc:13 yellow
    30767 
    30768 > swapaa #3/Gc:15 ALA
    30769 
    30770 Using Dunbrack library 
    30771 Swapping mutadedModel #3/Gc GLY 15 to ALA 
    30772 
    30773 > color #3/Gc:15 yellow
    30774 
    30775 > swapaa #3/Gc:16 SER
    30776 
    30777 Using Dunbrack library 
    30778 mutadedModel #3/Gc PRO 16: phi -70.1, psi 133.7 trans 
    30779 Applying SER rotamer (chi angles: 175.9) to mutadedModel #3/Gc SER 16 
    30780 
    30781 > color #3/Gc:16 yellow
    30782 
    30783 > swapaa #3/Gc:17 ASN
    30784 
    30785 Using Dunbrack library 
    30786 mutadedModel #3/Gc VAL 17: phi -105.2, psi 103.4 trans 
    30787 Applying ASN rotamer (chi angles: -176.5 -13.4) to mutadedModel #3/Gc ASN 17 
    30788 
    30789 > color #3/Gc:17 yellow
    30790 
    30791 > swapaa #3/Gc:18 HIS
    30792 
    30793 Using Dunbrack library 
    30794 mutadedModel #3/Gc VAL 18: phi -110.5, psi 50.1 trans 
    30795 Applying HIS rotamer (chi angles: 61.2 12.2) to mutadedModel #3/Gc HIS 18 
    30796 
    30797 > color #3/Gc:18 yellow
    30798 
    30799 > swapaa #3/Gc:19 ALA
    30800 
    30801 Using Dunbrack library 
    30802 Swapping mutadedModel #3/Gc SER 19 to ALA 
    30803 
    30804 > color #3/Gc:19 yellow
    30805 
    30806 > swapaa #3/Gc:20 THR
    30807 
    30808 Using Dunbrack library 
    30809 mutadedModel #3/Gc VAL 20: phi -88.6, psi 117.8 trans 
    30810 Applying THR rotamer (chi angles: -179.0) to mutadedModel #3/Gc THR 20 
    30811 
    30812 > color #3/Gc:20 yellow
    30813 
    30814 > swapaa #3/Gc:22 ALA
    30815 
    30816 Using Dunbrack library 
    30817 Swapping mutadedModel #3/Gc PRO 22 to ALA 
    30818 
    30819 > color #3/Gc:22 yellow
    30820 
    30821 > swapaa #3/Gc:24 PHE
    30822 
    30823 Using Dunbrack library 
    30824 mutadedModel #3/Gc TRP 24: phi -77.8, psi -5.1 trans 
    30825 Applying PHE rotamer (chi angles: -166.7 74.3) to mutadedModel #3/Gc PHE 24 
    30826 
    30827 > color #3/Gc:24 yellow
    30828 
    30829 > swapaa #3/Gc:25 ARG
    30830 
    30831 Using Dunbrack library 
    30832 mutadedModel #3/Gc LYS 25: phi -83.4, psi -15.3 trans 
    30833 Applying ARG rotamer (chi angles: -66.3 176.0 -66.9 172.3) to mutadedModel
    30834 #3/Gc ARG 25 
    30835 
    30836 > color #3/Gc:25 yellow
    30837 
    30838 > swapaa #3/Gc:26 GLU
    30839 
    30840 Using Dunbrack library 
    30841 mutadedModel #3/Gc ASP 26: phi -93.7, psi -16.7 trans 
    30842 Applying GLU rotamer (chi angles: -65.3 178.9 -5.2) to mutadedModel #3/Gc GLU
    30843 26 
    30844 
    30845 > color #3/Gc:26 yellow
    30846 
    30847 > swapaa #3/Gc:28 LEU
    30848 
    30849 Using Dunbrack library 
    30850 mutadedModel #3/Gc MET 28: phi -73.4, psi -25.3 trans 
    30851 Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/Gc LEU 28 
    30852 
    30853 > color #3/Gc:28 yellow
    30854 
    30855 > swapaa #3/Gc:29 SER
    30856 
    30857 Using Dunbrack library 
    30858 mutadedModel #3/Gc ALA 29: phi -91.4, psi -5.9 trans 
    30859 Applying SER rotamer (chi angles: 66.7) to mutadedModel #3/Gc SER 29 
    30860 
    30861 > color #3/Gc:29 yellow
    30862 
    30863 > swapaa #3/Gc:30 LYS
    30864 
    30865 Using Dunbrack library 
    30866 mutadedModel #3/Gc GLU 30: phi -98.6, psi 85.2 trans 
    30867 Applying LYS rotamer (chi angles: -64.8 179.3 177.6 65.8) to mutadedModel
    30868 #3/Gc LYS 30 
    30869 
    30870 > color #3/Gc:30 yellow
    30871 
    30872 > swapaa #3/Gc:31 ILE
    30873 
    30874 Using Dunbrack library 
    30875 mutadedModel #3/Gc ARG 31: phi 0.7, psi -3.6 trans 
    30876 Applying ILE rotamer (chi angles: -167.5 65.0) to mutadedModel #3/Gc ILE 31 
    30877 
    30878 > color #3/Gc:31 yellow
    30879 
    30880 > swapaa #3/Gc:32 PRO
    30881 
    30882 Using Dunbrack library 
    30883 mutadedModel #3/Gc ALA 32: phi -74.5, psi 127.5 trans 
    30884 Applying PRO rotamer (chi angles: 25.0 -32.3) to mutadedModel #3/Gc PRO 32 
    30885 
    30886 > color #3/Gc:32 yellow
    30887 
    30888 > swapaa #3/Gc:34 THR
    30889 
    30890 Using Dunbrack library 
    30891 mutadedModel #3/Gc ARG 34: phi -111.6, psi 116.0 trans 
    30892 Applying THR rotamer (chi angles: -60.7) to mutadedModel #3/Gc THR 34 
    30893 
    30894 > color #3/Gc:34 yellow
    30895 
    30896 > swapaa #3/Gc:35 ASN
    30897 
    30898 Using Dunbrack library 
    30899 mutadedModel #3/Gc ILE 35: phi -123.5, psi 150.5 trans 
    30900 Applying ASN rotamer (chi angles: -173.3 17.0) to mutadedModel #3/Gc ASN 35 
    30901 
    30902 > color #3/Gc:35 yellow
    30903 
    30904 > swapaa #3/Gc:37 SER
    30905 
    30906 Using Dunbrack library 
    30907 mutadedModel #3/Gc GLU 37: phi -136.5, psi 137.2 trans 
    30908 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 37 
    30909 
    30910 > color #3/Gc:37 yellow
    30911 
    30912 > swapaa #3/Gc:40 GLY
    30913 
    30914 Using Dunbrack library 
    30915 Swapping mutadedModel #3/Gc ASP 40 to GLY 
    30916 
    30917 > color #3/Gc:40 yellow
    30918 
    30919 > swapaa #3/Gc:41 ASN
    30920 
    30921 Using Dunbrack library 
    30922 mutadedModel #3/Gc VAL 41: phi -94.7, psi 2.5 trans 
    30923 Applying ASN rotamer (chi angles: -69.5 -34.6) to mutadedModel #3/Gc ASN 41 
    30924 
    30925 > color #3/Gc:41 yellow
    30926 
    30927 > swapaa #3/Gc:43 VAL
    30928 
    30929 Using Dunbrack library 
    30930 mutadedModel #3/Gc LEU 43: phi -89.6, psi 138.6 trans 
    30931 Applying VAL rotamer (chi angles: 175.5) to mutadedModel #3/Gc VAL 43 
    30932 
    30933 > color #3/Gc:43 yellow
    30934 
    30935 > swapaa #3/Gc:47 CYS
    30936 
    30937 Using Dunbrack library 
    30938 mutadedModel #3/Gc THR 47: phi -135.3, psi 149.8 trans 
    30939 Applying CYS rotamer (chi angles: -176.6) to mutadedModel #3/Gc CYS 47 
    30940 
    30941 > color #3/Gc:47 yellow
    30942 
    30943 > swapaa #3/Gc:48 GLU
    30944 
    30945 Using Dunbrack library 
    30946 mutadedModel #3/Gc LYS 48: phi -128.9, psi 132.8 trans 
    30947 Applying GLU rotamer (chi angles: -178.1 177.9 -30.2) to mutadedModel #3/Gc
    30948 GLU 48 
    30949 
    30950 > color #3/Gc:48 yellow
    30951 
    30952 > swapaa #3/Gc:49 GLU
    30953 
    30954 Using Dunbrack library 
    30955 mutadedModel #3/Gc LYS 49: phi -130.3, psi 98.6 trans 
    30956 Applying GLU rotamer (chi angles: -64.0 -179.9 -4.2) to mutadedModel #3/Gc GLU
    30957 49 
    30958 
    30959 > color #3/Gc:49 yellow
    30960 
    30961 > swapaa #3/Gc:52 LEU
    30962 
    30963 Using Dunbrack library 
    30964 mutadedModel #3/Gc ASP 52: phi -102.6, psi -16.3 trans 
    30965 Applying LEU rotamer (chi angles: -61.2 176.9) to mutadedModel #3/Gc LEU 52 
    30966 
    30967 > color #3/Gc:52 yellow
    30968 
    30969 > swapaa #3/Gc:54 LYS
    30970 
    30971 Using Dunbrack library 
    30972 mutadedModel #3/Gc GLU 54: phi -72.3, psi 158.4 trans 
    30973 Applying LYS rotamer (chi angles: -81.9 69.8 178.6 177.5) to mutadedModel
    30974 #3/Gc LYS 54 
    30975 
    30976 > color #3/Gc:54 yellow
    30977 
    30978 > swapaa #3/Gc:57 THR
    30979 
    30980 Using Dunbrack library 
    30981 mutadedModel #3/Gc VAL 57: phi -81.1, psi 113.7 trans 
    30982 Applying THR rotamer (chi angles: -59.5) to mutadedModel #3/Gc THR 57 
    30983 
    30984 > color #3/Gc:57 yellow
    30985 
    30986 > swapaa #3/Gc:60 VAL
    30987 
    30988 Using Dunbrack library 
    30989 mutadedModel #3/Gc ILE 60: phi -125.1, psi 139.9 trans 
    30990 Applying VAL rotamer (chi angles: 177.8) to mutadedModel #3/Gc VAL 60 
    30991 
    30992 > color #3/Gc:60 yellow
    30993 
    30994 > swapaa #3/Gc:61 TRP
    30995 
    30996 Using Dunbrack library 
    30997 mutadedModel #3/Gc PHE 61: phi -125.1, psi 107.2 trans 
    30998 Applying TRP rotamer (chi angles: -65.4 65.7) to mutadedModel #3/Gc TRP 61 
    30999 
    31000 > color #3/Gc:61 yellow
    31001 
    31002 > swapaa #3/Gc:62 MET
    31003 
    31004 Using Dunbrack library 
    31005 mutadedModel #3/Gc LEU 62: phi -92.5, psi 122.1 trans 
    31006 Applying MET rotamer (chi angles: -177.6 178.9 -71.1) to mutadedModel #3/Gc
    31007 MET 62 
    31008 
    31009 > color #3/Gc:62 yellow
    31010 
    31011 > swapaa #3/Gc:63 ASP
    31012 
    31013 Using Dunbrack library 
    31014 mutadedModel #3/Gc ALA 63: phi -35.8, psi 81.0 trans 
    31015 Applying ASP rotamer (chi angles: -69.4 -73.7) to mutadedModel #3/Gc ASP 63 
    31016 
    31017 > color #3/Gc:63 yellow
    31018 
    31019 > swapaa #3/Gc:64 ALA
    31020 
    31021 Using Dunbrack library 
    31022 Swapping mutadedModel #3/Gc SER 64 to ALA 
    31023 
    31024 > color #3/Gc:64 yellow
    31025 
    31026 > swapaa #3/Gc:65 GLY
    31027 
    31028 Using Dunbrack library 
    31029 Swapping mutadedModel #3/Gc ARG 65 to GLY 
    31030 
    31031 > color #3/Gc:65 yellow
    31032 
    31033 > swapaa #3/Gc:69 GLU
    31034 
    31035 Using Dunbrack library 
    31036 mutadedModel #3/Gc ALA 69: phi -110.8, psi 139.3 trans 
    31037 Applying GLU rotamer (chi angles: 62.3 -180.0 2.8) to mutadedModel #3/Gc GLU
    31038 69 
    31039 
    31040 > color #3/Gc:69 yellow
    31041 
    31042 > swapaa #3/Gc:71 ILE
    31043 
    31044 Using Dunbrack library 
    31045 mutadedModel #3/Gc LEU 71: phi -68.2, psi -36.3 trans 
    31046 Applying ILE rotamer (chi angles: -164.7 168.2) to mutadedModel #3/Gc ILE 71 
    31047 
    31048 > color #3/Gc:71 yellow
    31049 
    31050 > swapaa #3/Gc:73 TYR
    31051 
    31052 Using Dunbrack library 
    31053 mutadedModel #3/Gc PHE 73: phi -126.3, psi 65.3 trans 
    31054 Applying TYR rotamer (chi angles: -59.4 74.9) to mutadedModel #3/Gc TYR 73 
    31055 
    31056 > color #3/Gc:73 yellow
    31057 
    31058 > swapaa #3/Gc:76 THR
    31059 
    31060 Using Dunbrack library 
    31061 mutadedModel #3/Gc CYS 76: phi -77.8, psi -47.4 trans 
    31062 Applying THR rotamer (chi angles: -60.2) to mutadedModel #3/Gc THR 76 
    31063 
    31064 > color #3/Gc:76 yellow
    31065 
    31066 > swapaa #3/Gc:78 ARG
    31067 
    31068 Using Dunbrack library 
    31069 mutadedModel #3/Gc TRP 78: phi -75.9, psi -30.8 trans 
    31070 Applying ARG rotamer (chi angles: -69.5 -178.3 -176.5 -84.3) to mutadedModel
    31071 #3/Gc ARG 78 
    31072 
    31073 > color #3/Gc:78 yellow
    31074 
    31075 > swapaa #3/Gc:81 GLU
    31076 
    31077 Using Dunbrack library 
    31078 mutadedModel #3/Gc LEU 81: phi -57.9, psi -38.1 trans 
    31079 Applying GLU rotamer (chi angles: -178.0 65.6 20.3) to mutadedModel #3/Gc GLU
    31080 81 
    31081 
    31082 > color #3/Gc:81 yellow
    31083 
    31084 > swapaa #3/Gc:82 LYS
    31085 
    31086 Using Dunbrack library 
    31087 mutadedModel #3/Gc PHE 82: phi -77.1, psi -19.9 trans 
    31088 Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel
    31089 #3/Gc LYS 82 
    31090 
    31091 > color #3/Gc:82 yellow
    31092 
    31093 > swapaa #3/Gc:83 CYS
    31094 
    31095 Using Dunbrack library 
    31096 mutadedModel #3/Gc VAL 83: phi -79.8, psi -31.4 trans 
    31097 Applying CYS rotamer (chi angles: 67.3) to mutadedModel #3/Gc CYS 83 
    31098 
    31099 > color #3/Gc:83 yellow
    31100 
    31101 > swapaa #3/Gc:87 GLY
    31102 
    31103 Using Dunbrack library 
    31104 Swapping mutadedModel #3/Gc ARG 87 to GLY 
    31105 
    31106 > color #3/Gc:87 yellow
    31107 
    31108 > swapaa #3/Gc:88 THR
    31109 
    31110 Using Dunbrack library 
    31111 mutadedModel #3/Gc SER 88: phi -101.2, psi 122.5 trans 
    31112 Applying THR rotamer (chi angles: 57.8) to mutadedModel #3/Gc THR 88 
    31113 
    31114 > color #3/Gc:88 yellow
    31115 
    31116 > swapaa #3/Gc:89 THR
    31117 
    31118 Using Dunbrack library 
    31119 mutadedModel #3/Gc ASP 89: phi -45.8, psi 6.4 trans 
    31120 Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/Gc THR 89 
    31121 
    31122 > color #3/Gc:89 yellow
    31123 
    31124 > swapaa #3/Gc:90 ASN
    31125 
    31126 Using Dunbrack library 
    31127 mutadedModel #3/Gc ASP 90: phi -130.3, psi -15.7 trans 
    31128 Applying ASN rotamer (chi angles: 63.9 -82.1) to mutadedModel #3/Gc ASN 90 
    31129 
    31130 > color #3/Gc:90 yellow
    31131 
    31132 > swapaa #3/Gc:91 GLN
    31133 
    31134 Using Dunbrack library 
    31135 mutadedModel #3/Gc LYS 91: phi -105.6, psi 134.2 trans 
    31136 Applying GLN rotamer (chi angles: -64.0 179.8 -60.6) to mutadedModel #3/Gc GLN
    31137 91 
    31138 
    31139 > color #3/Gc:91 yellow
    31140 
    31141 > swapaa #3/Gc:96 ILE
    31142 
    31143 Using Dunbrack library 
    31144 mutadedModel #3/Gc LEU 96: phi -66.8, psi -40.7 trans 
    31145 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/Gc ILE 96 
    31146 
    31147 > color #3/Gc:96 yellow
    31148 
    31149 > swapaa #3/Gc:98 LYS
    31150 
    31151 Using Dunbrack library 
    31152 mutadedModel #3/Gc GLN 98: phi -68.7, psi -35.1 trans 
    31153 Applying LYS rotamer (chi angles: -67.7 -65.9 -177.0 -178.7) to mutadedModel
    31154 #3/Gc LYS 98 
    31155 
    31156 > color #3/Gc:98 yellow
    31157 
    31158 > swapaa #3/Gc:101 GLU
    31159 
    31160 Using Dunbrack library 
    31161 mutadedModel #3/Gc SER 101: phi -53.3, psi -50.1 trans 
    31162 Applying GLU rotamer (chi angles: -67.9 82.6 -62.2) to mutadedModel #3/Gc GLU
    31163 101 
    31164 
    31165 > color #3/Gc:101 yellow
    31166 
    31167 > swapaa #3/Gc:106 GLN
    31168 
    31169 Using Dunbrack library 
    31170 mutadedModel #3/Gc ARG 106: phi 160.7, psi 33.9 trans 
    31171 Applying GLN rotamer (chi angles: -171.4 -83.7 -7.3) to mutadedModel #3/Gc GLN
    31172 106 
    31173 
    31174 > color #3/Gc:106 yellow
    31175 
    31176 > swapaa #3/Gc:108 GLU
    31177 
    31178 Using Dunbrack library 
    31179 mutadedModel #3/Gc THR 108: phi -121.1, psi 124.6 trans 
    31180 Applying GLU rotamer (chi angles: 177.4 66.2 -44.6) to mutadedModel #3/Gc GLU
    31181 108 
    31182 
    31183 > color #3/Gc:108 yellow
    31184 
    31185 > swapaa #3/Gc:109 VAL
    31186 
    31187 Using Dunbrack library 
    31188 mutadedModel #3/Gc PRO 109: phi -102.6, psi 137.3 trans 
    31189 Applying VAL rotamer (chi angles: 176.4) to mutadedModel #3/Gc VAL 109 
    31190 
    31191 > color #3/Gc:109 yellow
    31192 
    31193 > swapaa #3/Gc:114 GLU
    31194 
    31195 Using Dunbrack library 
    31196 mutadedModel #3/Gc LEU 114: phi -117.8, psi -30.9 trans 
    31197 Applying GLU rotamer (chi angles: -176.5 174.6 -29.7) to mutadedModel #3/Gc
    31198 GLU 114 
    31199 
    31200 > color #3/Gc:114 yellow
    31201 
    31202 > swapaa #3/Gc:115 GLN
    31203 
    31204 Using Dunbrack library 
    31205 mutadedModel #3/Gc ARG 115: phi -98.4, psi 155.6 trans 
    31206 Applying GLN rotamer (chi angles: 68.1 -84.0 29.5) to mutadedModel #3/Gc GLN
    31207 115 
    31208 
    31209 > color #3/Gc:115 yellow
    31210 
    31211 > swapaa #3/Gc:117 TYR
    31212 
    31213 Using Dunbrack library 
    31214 mutadedModel #3/Gc ARG 117: phi -114.6, psi 145.8 trans 
    31215 Applying TYR rotamer (chi angles: 62.0 88.9) to mutadedModel #3/Gc TYR 117 
    31216 
    31217 > color #3/Gc:117 yellow
    31218 
    31219 > swapaa #3/Gc:119 TYR
    31220 
    31221 Using Dunbrack library 
    31222 mutadedModel #3/Gc ARG 119: phi -144.1, psi 159.7 trans 
    31223 Applying TYR rotamer (chi angles: -60.7 144.6) to mutadedModel #3/Gc TYR 119 
    31224 
    31225 > color #3/Gc:119 yellow
    31226 
    31227 > swapaa #3/Gc:120 MET
    31228 
    31229 Using Dunbrack library 
    31230 mutadedModel #3/Gc ARG 120: phi -151.6, psi 141.6 trans 
    31231 Applying MET rotamer (chi angles: -178.2 179.2 -71.2) to mutadedModel #3/Gc
    31232 MET 120 
    31233 
    31234 > color #3/Gc:120 yellow
    31235 
    31236 > swapaa #3/Gc:121 LYS
    31237 
    31238 Using Dunbrack library 
    31239 mutadedModel #3/Gc GLN 121: phi -97.1, psi 106.0 trans 
    31240 Applying LYS rotamer (chi angles: -65.3 -179.2 -179.6 179.4) to mutadedModel
    31241 #3/Gc LYS 121 
    31242 
    31243 > color #3/Gc:121 yellow
    31244 
    31245 > swapaa #3/Gc:122 VAL
    31246 
    31247 Using Dunbrack library 
    31248 mutadedModel #3/Gc SER 122: phi -133.4, psi 176.8 trans 
    31249 Applying VAL rotamer (chi angles: -60.8) to mutadedModel #3/Gc VAL 122 
    31250 
    31251 > color #3/Gc:122 yellow
    31252 
    31253 > swapaa #3/Gc:124 LYS
    31254 
    31255 Using Dunbrack library 
    31256 mutadedModel #3/Gc ARG 124: phi -65.8, psi -31.8 trans 
    31257 Applying LYS rotamer (chi angles: -69.9 179.6 -180.0 178.4) to mutadedModel
    31258 #3/Gc LYS 124 
    31259 
    31260 > color #3/Gc:124 yellow
    31261 
    31262 > swapaa #3/Gc:125 GLU
    31263 
    31264 Using Dunbrack library 
    31265 mutadedModel #3/Gc ASP 125: phi -83.3, psi -14.1 trans 
    31266 Applying GLU rotamer (chi angles: 70.8 -84.5 73.2) to mutadedModel #3/Gc GLU
    31267 125 
    31268 
    31269 > color #3/Gc:125 yellow
    31270 
    31271 > swapaa #3/Gc:127 THR
    31272 
    31273 Using Dunbrack library 
    31274 mutadedModel #3/Gc VAL 127: phi -91.8, psi -44.8 trans 
    31275 Applying THR rotamer (chi angles: -59.2) to mutadedModel #3/Gc THR 127 
    31276 
    31277 > color #3/Gc:127 yellow
    31278 
    31279 > swapaa #3/Gc:128 ASP
    31280 
    31281 Using Dunbrack library 
    31282 mutadedModel #3/Gc LEU 128: phi -59.3, psi -56.1 trans 
    31283 Applying ASP rotamer (chi angles: -175.6 63.2) to mutadedModel #3/Gc ASP 128 
    31284 
    31285 > color #3/Gc:128 yellow
    31286 
    31287 > swapaa #3/Gc:129 ARG
    31288 
    31289 Using Dunbrack library 
    31290 mutadedModel #3/Gc LYS 129: phi -57.6, psi -22.3 trans 
    31291 Applying ARG rotamer (chi angles: -178.0 74.4 -84.7 171.4) to mutadedModel
    31292 #3/Gc ARG 129 
    31293 
    31294 > color #3/Gc:129 yellow
    31295 
    31296 > swapaa #3/Gc:131 VAL
    31297 
    31298 Using Dunbrack library 
    31299 mutadedModel #3/Gc ILE 131: phi -75.3, psi -40.0 trans 
    31300 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/Gc VAL 131 
    31301 
    31302 > color #3/Gc:131 yellow
    31303 
    31304 > swapaa #3/Gc:136 ASP
    31305 
    31306 Using Dunbrack library 
    31307 mutadedModel #3/Gc GLU 136: phi -67.6, psi -34.0 trans 
    31308 Applying ASP rotamer (chi angles: -170.4 34.9) to mutadedModel #3/Gc ASP 136 
    31309 
    31310 > color #3/Gc:136 yellow
    31311 
    31312 > swapaa #3/Gc:138 VAL
    31313 
    31314 Using Dunbrack library 
    31315 mutadedModel #3/Gc SER 138: phi -89.8, psi 1.0 trans 
    31316 Applying VAL rotamer (chi angles: -58.5) to mutadedModel #3/Gc VAL 138 
    31317 
    31318 > color #3/Gc:138 yellow
    31319 
    31320 > swapaa #3/Gc:139 ARG
    31321 
    31322 Using Dunbrack library 
    31323 mutadedModel #3/Gc GLY 139: phi -143.5, psi -4.2 trans 
    31324 Applying ARG rotamer (chi angles: 66.5 92.9 71.6 -112.0) to mutadedModel #3/Gc
    31325 ARG 139 
    31326 
    31327 > color #3/Gc:139 yellow
    31328 
    31329 > swapaa #3/Gc:140 ASN
    31330 
    31331 Using Dunbrack library 
    31332 mutadedModel #3/Gc LEU 140: phi -104.7, psi 107.9 trans 
    31333 Applying ASN rotamer (chi angles: -65.2 -48.5) to mutadedModel #3/Gc ASN 140 
    31334 
    31335 > color #3/Gc:140 yellow
    31336 
    31337 > swapaa #3/Gc:141 ALA
    31338 
    31339 Using Dunbrack library 
    31340 Swapping mutadedModel #3/Gc SER 141 to ALA 
    31341 
    31342 > color #3/Gc:141 yellow
    31343 
    31344 > swapaa #3/Gc:143 MET
    31345 
    31346 Using Dunbrack library 
    31347 mutadedModel #3/Gc GLN 143: phi -77.9, psi 61.0 trans 
    31348 Applying MET rotamer (chi angles: -73.2 76.9 73.4) to mutadedModel #3/Gc MET
    31349 143 
    31350 
    31351 > color #3/Gc:143 yellow
    31352 
    31353 > swapaa #3/Gc:144 GLU
    31354 
    31355 Using Dunbrack library 
    31356 mutadedModel #3/Gc THR 144: phi -83.9, psi 168.0 trans 
    31357 Applying GLU rotamer (chi angles: 60.1 85.8 19.8) to mutadedModel #3/Gc GLU
    31358 144 
    31359 
    31360 > color #3/Gc:144 yellow
    31361 
    31362 > swapaa #3/Gc:145 ASP
    31363 
    31364 Using Dunbrack library 
    31365 mutadedModel #3/Gc THR 145: phi -71.9, psi -38.4 trans 
    31366 Applying ASP rotamer (chi angles: 57.8 -16.4) to mutadedModel #3/Gc ASP 145 
    31367 
    31368 > color #3/Gc:145 yellow
    31369 
    31370 > swapaa #3/Gc:147 ASP
    31371 
    31372 Using Dunbrack library 
    31373 mutadedModel #3/Gc ALA 147: phi -67.2, psi -35.4 trans 
    31374 Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/Gc ASP 147 
    31375 
    31376 > color #3/Gc:147 yellow
    31377 
    31378 > swapaa #3/Gc:149 VAL
    31379 
    31380 Using Dunbrack library 
    31381 mutadedModel #3/Gc ILE 149: phi -63.7, psi -42.4 trans 
    31382 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 149 
    31383 
    31384 > color #3/Gc:149 yellow
    31385 
    31386 > swapaa #3/Gc:153 ALA
    31387 
    31388 Using Dunbrack library 
    31389 Swapping mutadedModel #3/Gc GLY 153 to ALA 
    31390 
    31391 > color #3/Gc:153 yellow
    31392 
    31393 > swapaa #3/Gc:155 VAL
    31394 
    31395 Using Dunbrack library 
    31396 mutadedModel #3/Gc LEU 155: phi -63.9, psi -37.4 trans 
    31397 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 155 
    31398 
    31399 > color #3/Gc:155 yellow
    31400 
    31401 > swapaa #3/Gc:156 HIS
    31402 
    31403 Using Dunbrack library 
    31404 mutadedModel #3/Gc PHE 156: phi -67.5, psi -36.8 trans 
    31405 Applying HIS rotamer (chi angles: -70.4 82.5) to mutadedModel #3/Gc HIS 156 
    31406 
    31407 > color #3/Gc:156 yellow
    31408 
    31409 > swapaa #3/Gc:157 GLN
    31410 
    31411 Using Dunbrack library 
    31412 mutadedModel #3/Gc LYS 157: phi -62.4, psi -39.1 trans 
    31413 Applying GLN rotamer (chi angles: -69.8 176.6 64.1) to mutadedModel #3/Gc GLN
    31414 157 
    31415 
    31416 > color #3/Gc:157 yellow
    31417 
    31418 > swapaa #3/Gc:158 ASP
    31419 
    31420 Using Dunbrack library 
    31421 mutadedModel #3/Gc ALA 158: phi -64.8, psi -37.9 trans 
    31422 Applying ASP rotamer (chi angles: -173.6 64.2) to mutadedModel #3/Gc ASP 158 
    31423 
    31424 > color #3/Gc:158 yellow
    31425 
    31426 > swapaa #3/Gc:160 HIS
    31427 
    31428 Using Dunbrack library 
    31429 mutadedModel #3/Gc ASN 160: phi -78.6, psi -39.8 trans 
    31430 Applying HIS rotamer (chi angles: -69.4 82.0) to mutadedModel #3/Gc HIS 160 
    31431 
    31432 > color #3/Gc:160 yellow
    31433 
    31434 > swapaa #3/Gc:166 PRO
    31435 
    31436 Using Dunbrack library 
    31437 mutadedModel #3/Gc SER 166: phi -85.6, psi -24.7 trans 
    31438 Applying PRO rotamer (chi angles: 31.2 -36.1) to mutadedModel #3/Gc PRO 166 
    31439 
    31440 > color #3/Gc:166 yellow
    31441 
    31442 > swapaa #3/Gc:167 ASP
    31443 
    31444 Using Dunbrack library 
    31445 mutadedModel #3/Gc ASN 167: phi -79.9, psi -40.5 trans 
    31446 Applying ASP rotamer (chi angles: -68.4 76.3) to mutadedModel #3/Gc ASP 167 
    31447 
    31448 > color #3/Gc:167 yellow
    31449 
    31450 > swapaa #3/Gc:171 MET
    31451 
    31452 Using Dunbrack library 
    31453 mutadedModel #3/Gc GLN 171: phi -74.6, psi -35.0 trans 
    31454 Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/Gc MET
    31455 171 
    31456 
    31457 > color #3/Gc:171 yellow
    31458 
    31459 > swapaa #3/Gc:173 ASN
    31460 
    31461 Using Dunbrack library 
    31462 mutadedModel #3/Gc LEU 173: phi -64.9, psi -31.3 trans 
    31463 Applying ASN rotamer (chi angles: -73.3 -79.2) to mutadedModel #3/Gc ASN 173 
    31464 
    31465 > color #3/Gc:173 yellow
    31466 
    31467 > swapaa #3/Gc:175 HIS
    31468 
    31469 Using Dunbrack library 
    31470 mutadedModel #3/Gc PHE 175: phi -63.6, psi -32.9 trans 
    31471 Applying HIS rotamer (chi angles: -70.6 82.4) to mutadedModel #3/Gc HIS 175 
    31472 
    31473 > color #3/Gc:175 yellow
    31474 
    31475 > swapaa #3/Gc:177 CYS
    31476 
    31477 Using Dunbrack library 
    31478 mutadedModel #3/Gc SER 177: phi -72.6, psi -37.6 trans 
    31479 Applying CYS rotamer (chi angles: -175.1) to mutadedModel #3/Gc CYS 177 
    31480 
    31481 > color #3/Gc:177 yellow
    31482 
    31483 > swapaa #3/Gc:178 ALA
    31484 
    31485 Using Dunbrack library 
    31486 Swapping mutadedModel #3/Gc GLY 178 to ALA 
    31487 
    31488 > color #3/Gc:178 yellow
    31489 
    31490 > swapaa #3/Gc:180 ASP
    31491 
    31492 Using Dunbrack library 
    31493 mutadedModel #3/Gc ASN 180: phi -93.7, psi 55.4 trans 
    31494 Applying ASP rotamer (chi angles: -170.7 13.3) to mutadedModel #3/Gc ASP 180 
    31495 
    31496 > color #3/Gc:180 yellow
    31497 
    31498 > swapaa #3/Gc:181 SER
    31499 
    31500 Using Dunbrack library 
    31501 mutadedModel #3/Gc ALA 181: phi -117.1, psi -0.1 trans 
    31502 Applying SER rotamer (chi angles: -62.6) to mutadedModel #3/Gc SER 181 
    31503 
    31504 > color #3/Gc:181 yellow
    31505 
    31506 > swapaa #3/Gc:182 THR
    31507 
    31508 Using Dunbrack library 
    31509 mutadedModel #3/Gc VAL 182: phi -99.3, psi 151.5 trans 
    31510 Applying THR rotamer (chi angles: 61.6) to mutadedModel #3/Gc THR 182 
    31511 
    31512 > color #3/Gc:182 yellow
    31513 
    31514 > swapaa #3/Gc:186 VAL
    31515 
    31516 Using Dunbrack library 
    31517 mutadedModel #3/Gc PRO 186: phi -62.3, psi -123.7 trans 
    31518 Applying VAL rotamer (chi angles: -61.6) to mutadedModel #3/Gc VAL 186 
    31519 
    31520 > color #3/Gc:186 yellow
    31521 
    31522 > swapaa #3/Gc:188 THR
    31523 
    31524 Using Dunbrack library 
    31525 mutadedModel #3/Gc LEU 188: phi -81.9, psi 155.8 trans 
    31526 Applying THR rotamer (chi angles: -171.6) to mutadedModel #3/Gc THR 188 
    31527 
    31528 > color #3/Gc:188 yellow
    31529 
    31530 > swapaa #3/Gc:191 TYR
    31531 
    31532 Using Dunbrack library 
    31533 mutadedModel #3/Gc ARG 191: phi -148.0, psi 35.7 trans 
    31534 Applying TYR rotamer (chi angles: -62.0 75.3) to mutadedModel #3/Gc TYR 191 
    31535 
    31536 > color #3/Gc:191 yellow
    31537 
    31538 > swapaa #3/Gc:193 THR
    31539 
    31540 Using Dunbrack library 
    31541 mutadedModel #3/Gc SER 193: phi -65.3, psi 153.1 trans 
    31542 Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/Gc THR 193 
    31543 
    31544 > color #3/Gc:193 yellow
    31545 
    31546 > swapaa #3/Gc:194 GLU
    31547 
    31548 Using Dunbrack library 
    31549 mutadedModel #3/Gc ALA 194: phi -65.7, psi -42.0 trans 
    31550 Applying GLU rotamer (chi angles: -66.4 80.3 9.3) to mutadedModel #3/Gc GLU
    31551 194 
    31552 
    31553 > color #3/Gc:194 yellow
    31554 
    31555 > swapaa #3/Gc:198 LYS
    31556 
    31557 Using Dunbrack library 
    31558 mutadedModel #3/Gc PRO 198: phi -50.6, psi -16.1 trans 
    31559 Applying LYS rotamer (chi angles: -71.1 -177.2 175.0 65.8) to mutadedModel
    31560 #3/Gc LYS 198 
    31561 
    31562 > color #3/Gc:198 yellow
    31563 
    31564 > swapaa #3/Gc:199 LYS
    31565 
    31566 Using Dunbrack library 
    31567 mutadedModel #3/Gc ARG 199: phi -101.7, psi 3.2 trans 
    31568 Applying LYS rotamer (chi angles: -63.4 -175.4 -70.1 -66.8) to mutadedModel
    31569 #3/Gc LYS 199 
    31570 
    31571 > color #3/Gc:199 yellow
    31572 
    31573 > swapaa #3/Gc:201 THR
    31574 
    31575 Using Dunbrack library 
    31576 mutadedModel #3/Gc SER 201: phi -114.0, psi -168.4 trans 
    31577 Applying THR rotamer (chi angles: -169.4) to mutadedModel #3/Gc THR 201 
    31578 
    31579 > color #3/Gc:201 yellow
    31580 
    31581 > swapaa #3/Gc:203 GLU
    31582 
    31583 Using Dunbrack library 
    31584 mutadedModel #3/Gc SER 203: phi -77.8, psi -40.5 trans 
    31585 Applying GLU rotamer (chi angles: -66.5 80.5 9.8) to mutadedModel #3/Gc GLU
    31586 203 
    31587 
    31588 > color #3/Gc:203 yellow
    31589 
    31590 > swapaa #3/Gc:204 GLN
    31591 
    31592 Using Dunbrack library 
    31593 mutadedModel #3/Gc ARG 204: phi -61.7, psi -39.2 trans 
    31594 Applying GLN rotamer (chi angles: -175.4 64.8 78.1) to mutadedModel #3/Gc GLN
    31595 204 
    31596 
    31597 > color #3/Gc:204 yellow
    31598 
    31599 > swapaa #3/Gc:205 MET
    31600 
    31601 Using Dunbrack library 
    31602 mutadedModel #3/Gc GLU 205: phi -67.3, psi -33.1 trans 
    31603 Applying MET rotamer (chi angles: -68.5 177.3 70.7) to mutadedModel #3/Gc MET
    31604 205 
    31605 
    31606 > color #3/Gc:205 yellow
    31607 
    31608 > swapaa #3/Gc:211 SER
    31609 
    31610 Using Dunbrack library 
    31611 mutadedModel #3/Gc ALA 211: phi -59.0, psi -36.2 trans 
    31612 Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/Gc SER 211 
    31613 
    31614 > color #3/Gc:211 yellow
    31615 
    31616 > swapaa #3/Gc:213 LEU
    31617 
    31618 Using Dunbrack library 
    31619 mutadedModel #3/Gc MET 213: phi -84.7, psi 117.3 trans 
    31620 Applying LEU rotamer (chi angles: -179.2 64.3) to mutadedModel #3/Gc LEU 213 
    31621 
    31622 > color #3/Gc:213 yellow
    31623 
    31624 > swapaa #3/Gc:214 ALA
    31625 
    31626 Using Dunbrack library 
    31627 Swapping mutadedModel #3/Gc SER 214 to ALA 
    31628 
    31629 > color #3/Gc:214 yellow
    31630 
    31631 > swapaa #3/Gc:215 GLY
    31632 
    31633 Using Dunbrack library 
    31634 Swapping mutadedModel #3/Gc ALA 215 to GLY 
    31635 
    31636 > color #3/Gc:215 yellow
    31637 
    31638 > swapaa #3/Gc:218 VAL
    31639 
    31640 Using Dunbrack library 
    31641 mutadedModel #3/Gc THR 218: phi -88.4, psi 130.5 trans 
    31642 Applying VAL rotamer (chi angles: 176.8) to mutadedModel #3/Gc VAL 218 
    31643 
    31644 > color #3/Gc:218 yellow
    31645 
    31646 > swapaa #3/Gc:219 ILE
    31647 
    31648 Using Dunbrack library 
    31649 mutadedModel #3/Gc VAL 219: phi -116.8, psi 127.6 trans 
    31650 Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/Gc ILE 219 
    31651 
    31652 > color #3/Gc:219 yellow
    31653 
    31654 > swapaa #3/Gc:220 VAL
    31655 
    31656 Using Dunbrack library 
    31657 mutadedModel #3/Gc ILE 220: phi -99.2, psi 127.2 trans 
    31658 Applying VAL rotamer (chi angles: 177.4) to mutadedModel #3/Gc VAL 220 
    31659 
    31660 > color #3/Gc:220 yellow
    31661 
    31662 > swapaa #3/Gc:221 VAL
    31663 
    31664 Using Dunbrack library 
    31665 mutadedModel #3/Gc THR 221: phi -130.0, psi 145.3 trans 
    31666 Applying VAL rotamer (chi angles: -62.5) to mutadedModel #3/Gc VAL 221 
    31667 
    31668 > color #3/Gc:221 yellow
    31669 
    31670 > swapaa #3/Gc:227 ASP
    31671 
    31672 Using Dunbrack library 
    31673 mutadedModel #3/Gc SER 227: phi -80.7, psi 156.6 trans 
    31674 Applying ASP rotamer (chi angles: -166.3 -0.6) to mutadedModel #3/Gc ASP 227 
    31675 
    31676 > color #3/Gc:227 yellow
    31677 
    31678 > swapaa #3/Gc:228 HIS
    31679 
    31680 Using Dunbrack library 
    31681 mutadedModel #3/Gc PHE 228: phi -84.9, psi -34.9 trans 
    31682 Applying HIS rotamer (chi angles: -174.6 -172.6) to mutadedModel #3/Gc HIS 228 
    31683 
    31684 > color #3/Gc:228 yellow
    31685 
    31686 > swapaa #3/Gc:229 THR
    31687 
    31688 Using Dunbrack library 
    31689 mutadedModel #3/Gc GLU 229: phi -65.3, psi -45.7 trans 
    31690 Applying THR rotamer (chi angles: 58.3) to mutadedModel #3/Gc THR 229 
    31691 
    31692 > color #3/Gc:229 yellow
    31693 
    31694 > swapaa #3/Gc:230 VAL
    31695 
    31696 Using Dunbrack library 
    31697 mutadedModel #3/Gc GLU 230: phi -62.6, psi -43.0 trans 
    31698 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 230 
    31699 
    31700 > color #3/Gc:230 yellow
    31701 
    31702 > swapaa #3/Gc:233 LYS
    31703 
    31704 Using Dunbrack library 
    31705 mutadedModel #3/Gc LEU 233: phi -68.4, psi -31.5 trans 
    31706 Applying LYS rotamer (chi angles: -176.9 63.6 167.9 61.8) to mutadedModel
    31707 #3/Gc LYS 233 
    31708 
    31709 > color #3/Gc:233 yellow
    31710 
    31711 > swapaa #3/Gc:237 SER
    31712 
    31713 Using Dunbrack library 
    31714 mutadedModel #3/Gc ASP 237: phi -73.9, psi -92.2 trans 
    31715 Applying SER rotamer (chi angles: -64.9) to mutadedModel #3/Gc SER 237 
    31716 
    31717 > color #3/Gc:237 yellow
    31718 
    31719 > swapaa #3/Gc:238 TYR
    31720 
    31721 Using Dunbrack library 
    31722 mutadedModel #3/Gc GLY 238: phi -62.9, psi 1.0 trans 
    31723 Applying TYR rotamer (chi angles: -70.2 104.8) to mutadedModel #3/Gc TYR 238 
    31724 
    31725 > color #3/Gc:238 yellow
    31726 
    31727 > swapaa #3/Gc:239 PHE
    31728 
    31729 Using Dunbrack library 
    31730 mutadedModel #3/Gc GLY 239: phi -32.8, psi -18.9 trans 
    31731 Applying PHE rotamer (chi angles: -72.0 -16.2) to mutadedModel #3/Gc PHE 239 
    31732 
    31733 > color #3/Gc:239 yellow
    31734 
    31735 > swapaa #3/Gc:241 ASP
    31736 
    31737 Using Dunbrack library 
    31738 mutadedModel #3/Gc THR 241: phi -119.7, psi 8.8 trans 
    31739 Applying ASP rotamer (chi angles: 63.3 -3.2) to mutadedModel #3/Gc ASP 241 
    31740 
    31741 > color #3/Gc:241 yellow
    31742 
    31743 > swapaa #3/Gc:242 LEU
    31744 
    31745 Using Dunbrack library 
    31746 mutadedModel #3/Gc VAL 242: phi -83.2, psi 135.1 trans 
    31747 Applying LEU rotamer (chi angles: -62.9 175.6) to mutadedModel #3/Gc LEU 242 
    31748 
    31749 > color #3/Gc:242 yellow
    31750 
    31751 > swapaa #3/Gc:245 THR
    31752 
    31753 Using Dunbrack library 
    31754 mutadedModel #3/Gc SER 245: phi -127.2, psi 150.3 trans 
    31755 Applying THR rotamer (chi angles: 62.1) to mutadedModel #3/Gc THR 245 
    31756 
    31757 > color #3/Gc:245 yellow
    31758 
    31759 > swapaa #3/Gc:247 GLU
    31760 
    31761 Using Dunbrack library 
    31762 mutadedModel #3/Gc GLY 247: phi -55.4, psi -48.9 trans 
    31763 Applying GLU rotamer (chi angles: -67.4 80.8 1.3) to mutadedModel #3/Gc GLU
    31764 247 
    31765 
    31766 > color #3/Gc:247 yellow
    31767 
    31768 > swapaa #3/Gc:248 LYS
    31769 
    31770 Using Dunbrack library 
    31771 mutadedModel #3/Gc ASP 248: phi -98.0, psi 3.7 trans 
    31772 Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel
    31773 #3/Gc LYS 248 
    31774 
    31775 > color #3/Gc:248 yellow
    31776 
    31777 > swapaa #3/Gc:249 ALA
    31778 
    31779 Using Dunbrack library 
    31780 Swapping mutadedModel #3/Gc GLY 249 to ALA 
    31781 
    31782 > color #3/Gc:249 yellow
    31783 
    31784 > swapaa #3/Gc:250 ALA
    31785 
    31786 Using Dunbrack library 
    31787 Swapping mutadedModel #3/Gc PRO 250 to ALA 
    31788 
    31789 > color #3/Gc:250 yellow
    31790 
    31791 > swapaa #3/Gc:251 ILE
    31792 
    31793 Using Dunbrack library 
    31794 mutadedModel #3/Gc VAL 251: phi -69.0, psi 94.3 trans 
    31795 Applying ILE rotamer (chi angles: -60.7 170.6) to mutadedModel #3/Gc ILE 251 
    31796 
    31797 > color #3/Gc:251 yellow
    31798 
    31799 > swapaa #3/Gc:252 VAL
    31800 
    31801 Using Dunbrack library 
    31802 mutadedModel #3/Gc GLY 252: phi -95.6, psi -19.2 trans 
    31803 Applying VAL rotamer (chi angles: -60.2) to mutadedModel #3/Gc VAL 252 
    31804 
    31805 > color #3/Gc:252 yellow
    31806 
    31807 > swapaa #3/Gc:253 MET
    31808 
    31809 Using Dunbrack library 
    31810 mutadedModel #3/Gc ARG 253: phi -172.9, psi 129.8 trans 
    31811 Applying MET rotamer (chi angles: -178.5 176.3 71.4) to mutadedModel #3/Gc MET
    31812 253 
    31813 
    31814 > color #3/Gc:253 yellow
    31815 
    31816 > swapaa #3/Gc:256 SER
    31817 
    31818 Using Dunbrack library 
    31819 mutadedModel #3/Gc ALA 256: phi -83.8, psi 140.2 trans 
    31820 Applying SER rotamer (chi angles: 62.9) to mutadedModel #3/Gc SER 256 
    31821 
    31822 > color #3/Gc:256 yellow
    31823 
    31824 > swapaa #3/Gc:258 TYR
    31825 
    31826 Using Dunbrack library 
    31827 mutadedModel #3/Gc TRP 258: phi -116.5, psi 126.9 trans 
    31828 Applying TYR rotamer (chi angles: 178.4 76.7) to mutadedModel #3/Gc TYR 258 
    31829 
    31830 > color #3/Gc:258 yellow
    31831 
    31832 > swapaa #3/Gc:259 VAL
    31833 
    31834 Using Dunbrack library 
    31835 mutadedModel #3/Gc ILE 259: phi -123.4, psi 178.1 trans 
    31836 Applying VAL rotamer (chi angles: -60.8) to mutadedModel #3/Gc VAL 259 
    31837 
    31838 > color #3/Gc:259 yellow
    31839 
    31840 > swapaa #3/Gc:262 GLU
    31841 
    31842 Using Dunbrack library 
    31843 mutadedModel #3/Gc ARG 262: phi none, psi 142.6 trans 
    31844 Applying GLU rotamer (chi angles: -175.2 179.2 -57.4) to mutadedModel #3/Gc
    31845 GLU 262 
    31846 
    31847 > color #3/Gc:262 yellow
    31848 
    31849 > swapaa #3/Gc:263 TYR
    31850 
    31851 Using Dunbrack library 
    31852 mutadedModel #3/Gc ARG 263: phi -120.9, psi 131.0 trans 
    31853 Applying TYR rotamer (chi angles: 178.4 76.7) to mutadedModel #3/Gc TYR 263 
    31854 
    31855 > color #3/Gc:263 yellow
    31856 
    31857 > swapaa #3/Gc:266 TRP
    31858 
    31859 Using Dunbrack library 
    31860 mutadedModel #3/Gc ARG 266: phi -84.4, psi 108.4 trans 
    31861 Applying TRP rotamer (chi angles: -68.7 73.8) to mutadedModel #3/Gc TRP 266 
    31862 
    31863 > color #3/Gc:266 yellow
    31864 
    31865 > swapaa #3/Gc:270 TYR
    31866 
    31867 Using Dunbrack library 
    31868 mutadedModel #3/Gc ARG 270: phi -81.7, psi 128.2 trans 
    31869 Applying TYR rotamer (chi angles: -179.7 50.3) to mutadedModel #3/Gc TYR 270 
    31870 
    31871 > color #3/Gc:270 yellow
    31872 
    31873 > swapaa #3/Gc:272 THR
    31874 
    31875 Using Dunbrack library 
    31876 mutadedModel #3/Gc VAL 272: phi -128.9, psi 167.6 trans 
    31877 Applying THR rotamer (chi angles: 65.0) to mutadedModel #3/Gc THR 272 
    31878 
    31879 > color #3/Gc:272 yellow
    31880 
    31881 > swapaa #3/Gc:273 VAL
    31882 
    31883 Using Dunbrack library 
    31884 mutadedModel #3/Gc THR 273: phi -107.1, psi 117.9 trans 
    31885 Applying VAL rotamer (chi angles: 178.6) to mutadedModel #3/Gc VAL 273 
    31886 
    31887 > color #3/Gc:273 yellow
    31888 
    31889 > swapaa #3/Gc:274 ASN
    31890 
    31891 Using Dunbrack library 
    31892 mutadedModel #3/Gc ASP 274: phi -109.2, psi 126.1 trans 
    31893 Applying ASN rotamer (chi angles: -65.7 -101.9) to mutadedModel #3/Gc ASN 274 
    31894 
    31895 > color #3/Gc:274 yellow
    31896 
    31897 > swapaa #3/Gc:276 ALA
    31898 
    31899 Using Dunbrack library 
    31900 Swapping mutadedModel #3/Gc SER 276 to ALA 
    31901 
    31902 > color #3/Gc:276 yellow
    31903 
    31904 > swapaa #3/Gc:277 TRP
    31905 
    31906 Using Dunbrack library 
    31907 mutadedModel #3/Gc TYR 277: phi -124.2, psi 160.7 trans 
    31908 Applying TRP rotamer (chi angles: 60.5 -69.4) to mutadedModel #3/Gc TRP 277 
    31909 
    31910 > color #3/Gc:277 yellow
    31911 
    31912 > swapaa #3/Gc:279 PHE
    31913 
    31914 Using Dunbrack library 
    31915 mutadedModel #3/Gc TYR 279: phi -87.4, psi none trans 
    31916 Applying PHE rotamer (chi angles: 63.0 90.4) to mutadedModel #3/Gc PHE 279 
    31917 
    31918 > color #3/Gc:279 yellow
    31919 
    31920 > swapaa #3/Gc:282 CYS
    31921 
    31922 Using Dunbrack library 
    31923 mutadedModel #3/Gc THR 282: phi none, psi 159.6 trans 
    31924 Applying CYS rotamer (chi angles: -64.3) to mutadedModel #3/Gc CYS 282 
    31925 
    31926 > color #3/Gc:282 yellow
    31927 
    31928 > swapaa #3/Gc:284 ALA
    31929 
    31930 Using Dunbrack library 
    31931 Swapping mutadedModel #3/Gc PRO 284 to ALA 
    31932 
    31933 > color #3/Gc:284 yellow
    31934 
    31935 > swapaa #3/Gc:285 ALA
    31936 
    31937 Using Dunbrack library 
    31938 Swapping mutadedModel #3/Gc GLY 285 to ALA 
    31939 
    31940 > color #3/Gc:285 yellow
    31941 
    31942 > swapaa #3/Gc:286 CYS
    31943 
    31944 Using Dunbrack library 
    31945 mutadedModel #3/Gc THR 286: phi -102.9, psi 137.8 trans 
    31946 Applying CYS rotamer (chi angles: -179.9) to mutadedModel #3/Gc CYS 286 
    31947 
    31948 > color #3/Gc:286 yellow
    31949 
    31950 > swapaa #3/Gc:287 GLU
    31951 
    31952 Using Dunbrack library 
    31953 mutadedModel #3/Gc PRO 287: phi -65.8, psi -53.2 trans 
    31954 Applying GLU rotamer (chi angles: -69.0 -65.0 -48.1) to mutadedModel #3/Gc GLU
    31955 287 
    31956 
    31957 > color #3/Gc:287 yellow
    31958 
    31959 > swapaa #3/Gc:288 ASP
    31960 
    31961 Using Dunbrack library 
    31962 mutadedModel #3/Gc GLY 288: phi -46.7, psi 34.8 trans 
    31963 Applying ASP rotamer (chi angles: 62.8 -0.3) to mutadedModel #3/Gc ASP 288 
    31964 
    31965 > color #3/Gc:288 yellow
    31966 
    31967 > swapaa #3/Gc:289 ASN
    31968 
    31969 Using Dunbrack library 
    31970 mutadedModel #3/Gc LEU 289: phi -92.7, psi -4.7 trans 
    31971 Applying ASN rotamer (chi angles: 65.2 -4.5) to mutadedModel #3/Gc ASN 289 
    31972 
    31973 > color #3/Gc:289 yellow
    31974 
    31975 > swapaa #3/Gc:290 VAL
    31976 
    31977 Using Dunbrack library 
    31978 mutadedModel #3/Gc LEU 290: phi -86.5, psi -36.6 trans 
    31979 Applying VAL rotamer (chi angles: 174.9) to mutadedModel #3/Gc VAL 290 
    31980 
    31981 > color #3/Gc:290 yellow
    31982 
    31983 > swapaa #3/Gc:293 ALA
    31984 
    31985 Using Dunbrack library 
    31986 Swapping mutadedModel #3/Gc GLY 293 to ALA 
    31987 
    31988 > color #3/Gc:293 yellow
    31989 
    31990 > swapaa #3/Gc:296 CYS
    31991 
    31992 Using Dunbrack library 
    31993 mutadedModel #3/Gc SER 296: phi -78.7, psi -20.9 trans 
    31994 Applying CYS rotamer (chi angles: 67.9) to mutadedModel #3/Gc CYS 296 
    31995 
    31996 > color #3/Gc:296 yellow
    31997 
    31998 > swapaa #3/Gc:297 GLU
    31999 
    32000 Using Dunbrack library 
    32001 mutadedModel #3/Gc THR 297: phi -85.4, psi -19.6 trans 
    32002 Applying GLU rotamer (chi angles: -63.4 -65.0 -40.1) to mutadedModel #3/Gc GLU
    32003 297 
    32004 
    32005 > color #3/Gc:297 yellow
    32006 
    32007 > swapaa #3/Gc:299 PRO
    32008 
    32009 Using Dunbrack library 
    32010 mutadedModel #3/Gc THR 299: phi -150.8, psi 14.5 trans 
    32011 Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/Gc PRO 299 
    32012 
    32013 > color #3/Gc:299 yellow
    32014 
    32015 > swapaa #3/Gc:302 PHE
    32016 
    32017 Using Dunbrack library 
    32018 mutadedModel #3/Gc GLN 302: phi -149.1, psi 121.5 trans 
    32019 Applying PHE rotamer (chi angles: -176.4 133.0) to mutadedModel #3/Gc PHE 302 
    32020 
    32021 > color #3/Gc:302 yellow
    32022 
    32023 > swapaa #3/Gc:304 ARG
    32024 
    32025 Using Dunbrack library 
    32026 mutadedModel #3/Gc PHE 304: phi -9.6, psi -0.9 trans 
    32027 Applying ARG rotamer (chi angles: 66.5 92.9 71.6 -112.0) to mutadedModel #3/Gc
    32028 ARG 304 
    32029 
    32030 > color #3/Gc:304 yellow
    32031 
    32032 > swapaa #3/Gc:305 SER
    32033 
    32034 Using Dunbrack library 
    32035 mutadedModel #3/Gc THR 305: phi -97.3, psi -16.7 trans 
    32036 Applying SER rotamer (chi angles: 64.1) to mutadedModel #3/Gc SER 305 
    32037 
    32038 > color #3/Gc:305 yellow
    32039 
    32040 > swapaa #3/Gc:306 GLN
    32041 
    32042 Using Dunbrack library 
    32043 mutadedModel #3/Gc ARG 306: phi -82.1, psi 32.2 trans 
    32044 Applying GLN rotamer (chi angles: -65.7 178.7 65.3) to mutadedModel #3/Gc GLN
    32045 306 
    32046 
    32047 > color #3/Gc:306 yellow
    32048 
    32049 > swapaa #3/Gc:307 HIS
    32050 
    32051 Using Dunbrack library 
    32052 mutadedModel #3/Gc ARG 307: phi -34.7, psi 155.1 trans 
    32053 Applying HIS rotamer (chi angles: -174.4 -78.4) to mutadedModel #3/Gc HIS 307 
    32054 
    32055 > color #3/Gc:307 yellow
    32056 
    32057 > swapaa #3/Gc:308 GLU
    32058 
    32059 Using Dunbrack library 
    32060 mutadedModel #3/Gc THR 308: phi -16.4, psi -37.3 trans 
    32061 Applying GLU rotamer (chi angles: -176.9 177.2 58.2) to mutadedModel #3/Gc GLU
    32062 308 
    32063 
    32064 > color #3/Gc:308 yellow
    32065 
    32066 > swapaa #3/Gc:309 LEU
    32067 
    32068 Using Dunbrack library 
    32069 mutadedModel #3/Gc MET 309: phi -61.7, psi 48.7 trans 
    32070 Applying LEU rotamer (chi angles: 70.6 164.8) to mutadedModel #3/Gc LEU 309 
    32071 
    32072 > color #3/Gc:309 yellow
    32073 
    32074 > swapaa #3/Gc:310 GLY
    32075 
    32076 Using Dunbrack library 
    32077 Swapping mutadedModel #3/Gc THR 310 to GLY 
    32078 
    32079 > color #3/Gc:310 yellow
    32080 
    32081 > swapaa #3/Gc:311 GLN
    32082 
    32083 Using Dunbrack library 
    32084 mutadedModel #3/Gc SER 311: phi -104.6, psi 113.8 trans 
    32085 Applying GLN rotamer (chi angles: -177.4 178.3 -168.0) to mutadedModel #3/Gc
    32086 GLN 311 
    32087 
    32088 > color #3/Gc:311 yellow
    32089 
    32090 > swapaa #3/Gc:312 HIS
    32091 
    32092 Using Dunbrack library 
    32093 mutadedModel #3/Gc GLY 312: phi 179.2, psi none trans 
    32094 Applying HIS rotamer (chi angles: 65.4 -79.5) to mutadedModel #3/Gc HIS 312 
    32095 
    32096 > color #3/Gc:312 yellow
    32097 
    32098 > swapaa #3/Gc:314 MET
    32099 
    32100 Using Dunbrack library 
    32101 mutadedModel #3/Gc GLY 314: phi none, psi -89.9 trans 
    32102 Applying MET rotamer (chi angles: -77.7 70.6 -98.9) to mutadedModel #3/Gc MET
    32103 314 
    32104 
    32105 > color #3/Gc:314 yellow
    32106 
    32107 > swapaa #3/Gc:316 ARG
    32108 
    32109 Using Dunbrack library 
    32110 mutadedModel #3/Gc ALA 316: phi -44.3, psi -11.2 trans 
    32111 Applying ARG rotamer (chi angles: -85.0 70.0 178.2 175.1) to mutadedModel
    32112 #3/Gc ARG 316 
    32113 
    32114 > color #3/Gc:316 yellow
    32115 
    32116 > swapaa #3/Gc:317 VAL
    32117 
    32118 Using Dunbrack library 
    32119 mutadedModel #3/Gc PHE 317: phi -81.6, psi -8.9 trans 
    32120 Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/Gc VAL 317 
    32121 
    32122 > color #3/Gc:317 yellow
    32123 
    32124 > swapaa #3/Gc:318 LEU
    32125 
    32126 Using Dunbrack library 
    32127 mutadedModel #3/Gc HIS 318: phi -81.4, psi -25.5 trans 
    32128 Applying LEU rotamer (chi angles: 70.0 84.1) to mutadedModel #3/Gc LEU 318 
    32129 
    32130 > color #3/Gc:318 yellow
    32131 
    32132 > swapaa #3/Gc:319 LYS
    32133 
    32134 Using Dunbrack library 
    32135 mutadedModel #3/Gc ARG 319: phi -83.9, psi -20.7 trans 
    32136 Applying LYS rotamer (chi angles: 35.8 76.5 174.7 -88.1) to mutadedModel #3/Gc
    32137 LYS 319 
    32138 
    32139 > color #3/Gc:319 yellow
    32140 
    32141 > swapaa #3/Gc:321 PHE
    32142 
    32143 Using Dunbrack library 
    32144 mutadedModel #3/Gc LEU 321: phi -70.5, psi -33.8 trans 
    32145 Applying PHE rotamer (chi angles: -73.1 132.8) to mutadedModel #3/Gc PHE 321 
    32146 
    32147 > color #3/Gc:321 yellow
    32148 
    32149 > swapaa #3/Gc:322 SER
    32150 
    32151 Using Dunbrack library 
    32152 mutadedModel #3/Gc LYS 322: phi -115.3, psi -22.4 trans 
    32153 Applying SER rotamer (chi angles: 63.0) to mutadedModel #3/Gc SER 322 
    32154 
    32155 > color #3/Gc:322 yellow
    32156 
    32157 > swapaa #3/Gc:326 HIS
    32158 
    32159 Using Dunbrack library 
    32160 mutadedModel #3/Gc PHE 326: phi none, psi 74.6 trans 
    32161 Applying HIS rotamer (chi angles: -178.4 71.5) to mutadedModel #3/Gc HIS 326 
    32162 
    32163 > color #3/Gc:326 yellow
    32164 
    32165 > swapaa #3/Gc:327 SER
    32166 
    32167 Using Dunbrack library 
    32168 mutadedModel #3/Gc ALA 327: phi -116.9, psi 33.9 trans 
    32169 Applying SER rotamer (chi angles: 57.9) to mutadedModel #3/Gc SER 327 
    32170 
    32171 > color #3/Gc:327 yellow
    32172 
    32173 > swapaa #3/Gc:328 THR
    32174 
    32175 Using Dunbrack library 
    32176 mutadedModel #3/Gc GLY 328: phi -177.0, psi 135.7 trans 
    32177 Applying THR rotamer (chi angles: -176.3) to mutadedModel #3/Gc THR 328 
    32178 
    32179 > color #3/Gc:328 yellow
    32180 
    32181 > swapaa #3/Gc:330 THR
    32182 
    32183 Using Dunbrack library 
    32184 mutadedModel #3/Gc ARG 330: phi 47.5, psi 13.3 trans 
    32185 Applying THR rotamer (chi angles: 69.5) to mutadedModel #3/Gc THR 330 
    32186 
    32187 > color #3/Gc:330 yellow
    32188 
    32189 > swapaa #3/Gc:331 ASN
    32190 
    32191 Using Dunbrack library 
    32192 mutadedModel #3/Gc LEU 331: phi -93.6, psi 138.4 trans 
    32193 Applying ASN rotamer (chi angles: -67.0 -97.3) to mutadedModel #3/Gc ASN 331 
    32194 
    32195 > color #3/Gc:331 yellow
    32196 
    32197 > swapaa #3/Gc:332 THR
    32198 
    32199 Using Dunbrack library 
    32200 mutadedModel #3/Gc SER 332: phi -136.0, psi 80.6 trans 
    32201 Applying THR rotamer (chi angles: 56.4) to mutadedModel #3/Gc THR 332 
    32202 
    32203 > color #3/Gc:332 yellow
    32204 
    32205 > swapaa #3/Gc:333 HIS
    32206 
    32207 Using Dunbrack library 
    32208 mutadedModel #3/Gc GLY 333: phi -83.4, psi 27.9 trans 
    32209 Applying HIS rotamer (chi angles: -65.6 138.2) to mutadedModel #3/Gc HIS 333 
    32210 
    32211 > color #3/Gc:333 yellow
    32212 
    32213 > swapaa #3/Gc:334 PHE
    32214 
    32215 Using Dunbrack library 
    32216 mutadedModel #3/Gc TYR 334: phi -98.2, psi 64.3 cis 
    32217 Applying PHE rotamer (chi angles: -63.9 97.4) to mutadedModel #3/Gc PHE 334 
    32218 
    32219 > color #3/Gc:334 yellow
    32220 
    32221 > swapaa #3/Gc:336 GLU
    32222 
    32223 Using Dunbrack library 
    32224 mutadedModel #3/Gc SER 336: phi -70.7, psi -13.1 trans 
    32225 Applying GLU rotamer (chi angles: 67.2 -85.3 17.8) to mutadedModel #3/Gc GLU
    32226 336 
    32227 
    32228 > color #3/Gc:336 yellow
    32229 
    32230 > swapaa #3/Gc:337 LYS
    32231 
    32232 Using Dunbrack library 
    32233 mutadedModel #3/Gc GLU 337: phi -84.5, psi 5.9 trans 
    32234 Applying LYS rotamer (chi angles: -81.4 76.8 69.6 -179.2) to mutadedModel
    32235 #3/Gc LYS 337 
    32236 
    32237 > color #3/Gc:337 yellow
    32238 
    32239 > swapaa #3/Gc:338 SER
    32240 
    32241 Using Dunbrack library 
    32242 mutadedModel #3/Gc VAL 338: phi -101.4, psi 29.9 trans 
    32243 Applying SER rotamer (chi angles: 60.6) to mutadedModel #3/Gc SER 338 
    32244 
    32245 > color #3/Gc:338 yellow
    32246 
    32247 > swapaa #3/Gc:339 ILE
    32248 
    32249 Using Dunbrack library 
    32250 mutadedModel #3/Gc LEU 339: phi -53.1, psi 135.1 trans 
    32251 Applying ILE rotamer (chi angles: -169.6 167.5) to mutadedModel #3/Gc ILE 339 
    32252 
    32253 > color #3/Gc:339 yellow
    32254 
    32255 > swapaa #3/Gc:340 GLU
    32256 
    32257 Using Dunbrack library 
    32258 mutadedModel #3/Gc VAL 340: phi -119.2, psi -26.7 trans 
    32259 Applying GLU rotamer (chi angles: -63.9 179.2 -33.5) to mutadedModel #3/Gc GLU
    32260 340 
    32261 
    32262 > color #3/Gc:340 yellow
    32263 
    32264 > swapaa #3/Gc:341 THR
    32265 
    32266 Using Dunbrack library 
    32267 mutadedModel #3/Gc VAL 341: phi -168.1, psi 166.2 trans 
    32268 Applying THR rotamer (chi angles: -170.7) to mutadedModel #3/Gc THR 341 
    32269 
    32270 > color #3/Gc:341 yellow
    32271 
    32272 > swapaa #3/Gc:343 ASN
    32273 
    32274 Using Dunbrack library 
    32275 mutadedModel #3/Gc LEU 343: phi -137.6, psi 128.7 trans 
    32276 Applying ASN rotamer (chi angles: -65.7 -73.4) to mutadedModel #3/Gc ASN 343 
    32277 
    32278 > color #3/Gc:343 yellow
    32279 
    32280 > swapaa #3/Gc:347 HIS
    32281 
    32282 Using Dunbrack library 
    32283 mutadedModel #3/Gc PHE 347: phi -100.7, psi 100.2 trans 
    32284 Applying HIS rotamer (chi angles: -63.7 -77.7) to mutadedModel #3/Gc HIS 347 
    32285 
    32286 > color #3/Gc:347 yellow
    32287 
    32288 > swapaa #3/Gc:348 SER
    32289 
    32290 Using Dunbrack library 
    32291 mutadedModel #3/Gc THR 348: phi -96.9, psi 135.6 trans 
    32292 Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/Gc SER 348 
    32293 
    32294 > color #3/Gc:348 yellow
    32295 
    32296 > swapaa #3/Gc:349 TYR
    32297 
    32298 Using Dunbrack library 
    32299 mutadedModel #3/Gc HIS 349: phi -111.3, psi 172.2 trans 
    32300 Applying TYR rotamer (chi angles: -64.7 89.9) to mutadedModel #3/Gc TYR 349 
    32301 
    32302 > color #3/Gc:349 yellow
    32303 
    32304 > swapaa #3/Gc:350 LYS
    32305 
    32306 Using Dunbrack library 
    32307 mutadedModel #3/Gc GLN 350: phi -79.3, psi -36.3 trans 
    32308 Applying LYS rotamer (chi angles: -178.3 66.3 175.9 178.5) to mutadedModel
    32309 #3/Gc LYS 350 
    32310 
    32311 > color #3/Gc:350 yellow
    32312 
    32313 > swapaa #3/Gc:351 ASP
    32314 
    32315 Using Dunbrack library 
    32316 mutadedModel #3/Gc ASN 351: phi -96.4, psi -29.4 trans 
    32317 Applying ASP rotamer (chi angles: -63.6 -78.9) to mutadedModel #3/Gc ASP 351 
    32318 
    32319 > color #3/Gc:351 yellow
    32320 
    32321 > swapaa #3/Gc:352 VAL
    32322 
    32323 Using Dunbrack library 
    32324 mutadedModel #3/Gc ARG 352: phi -154.0, psi 114.0 trans 
    32325 Applying VAL rotamer (chi angles: 59.5) to mutadedModel #3/Gc VAL 352 
    32326 
    32327 > color #3/Gc:352 yellow
    32328 
    32329 > swapaa #3/Gc:354 LEU
    32330 
    32331 Using Dunbrack library 
    32332 mutadedModel #3/Gc HIS 354: phi -109.7, psi 130.3 trans 
    32333 Applying LEU rotamer (chi angles: -59.7 176.6) to mutadedModel #3/Gc LEU 354 
    32334 
    32335 > color #3/Gc:354 yellow
    32336 
    32337 > swapaa #3/Gc:355 CYS
    32338 
    32339 Using Dunbrack library 
    32340 mutadedModel #3/Gc LEU 355: phi -113.2, psi 150.6 trans 
    32341 Applying CYS rotamer (chi angles: -62.4) to mutadedModel #3/Gc CYS 355 
    32342 
    32343 > color #3/Gc:355 yellow
    32344 
    32345 > swapaa #3/Gc:357 MET
    32346 
    32347 Using Dunbrack library 
    32348 mutadedModel #3/Gc PHE 357: phi -36.6, psi 138.4 trans 
    32349 Applying MET rotamer (chi angles: -68.0 177.4 70.2) to mutadedModel #3/Gc MET
    32350 357 
    32351 
    32352 > color #3/Gc:357 yellow
    32353 
    32354 > swapaa #3/Gc:358 TYR
    32355 
    32356 Using Dunbrack library 
    32357 mutadedModel #3/Gc PHE 358: phi -111.1, psi 127.1 trans 
    32358 Applying TYR rotamer (chi angles: 178.0 52.1) to mutadedModel #3/Gc TYR 358 
    32359 
    32360 > color #3/Gc:358 yellow
    32361 
    32362 > swapaa #3/Gc:363 GLN
    32363 
    32364 Using Dunbrack library 
    32365 mutadedModel #3/Gc PHE 363: phi -88.3, psi 106.6 trans 
    32366 Applying GLN rotamer (chi angles: 179.8 66.6 55.5) to mutadedModel #3/Gc GLN
    32367 363 
    32368 
    32369 > color #3/Gc:363 yellow
    32370 
    32371 > swapaa #3/Gc:365 MET
    32372 
    32373 Using Dunbrack library 
    32374 mutadedModel #3/Gc GLN 365: phi -104.3, psi 142.0 trans 
    32375 Applying MET rotamer (chi angles: 61.0 80.7 70.5) to mutadedModel #3/Gc MET
    32376 365 
    32377 
    32378 > color #3/Gc:365 yellow
    32379 
    32380 > swapaa #3/Gc:366 GLY
    32381 
    32382 Using Dunbrack library 
    32383 Swapping mutadedModel #3/Gc SER 366 to GLY 
    32384 
    32385 > color #3/Gc:366 yellow
    32386 
    32387 > swapaa #3/Gc:370 ASP
    32388 
    32389 Using Dunbrack library 
    32390 mutadedModel #3/Gc ALA 370: phi -117.0, psi 161.9 trans 
    32391 Applying ASP rotamer (chi angles: -166.0 -0.2) to mutadedModel #3/Gc ASP 370 
    32392 
    32393 > color #3/Gc:370 yellow
    32394 
    32395 > swapaa #3/Gc:371 GLY
    32396 
    32397 Using Dunbrack library 
    32398 Swapping mutadedModel #3/Gc ALA 371 to GLY 
    32399 
    32400 > color #3/Gc:371 yellow
    32401 
    32402 > swapaa #3/Gc:372 GLY
    32403 
    32404 Using Dunbrack library 
    32405 Swapping mutadedModel #3/Gc ALA 372 to GLY 
    32406 
    32407 > color #3/Gc:372 yellow
    32408 
    32409 > swapaa #3/Gc:373 VAL
    32410 
    32411 Using Dunbrack library 
    32412 mutadedModel #3/Gc ASN 373: phi -77.8, psi -32.0 trans 
    32413 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/Gc VAL 373 
    32414 
    32415 > color #3/Gc:373 yellow
    32416 
    32417 > swapaa #3/Gc:375 VAL
    32418 
    32419 Using Dunbrack library 
    32420 mutadedModel #3/Gc ASN 375: phi -89.2, psi -37.5 trans 
    32421 Applying VAL rotamer (chi angles: 174.9) to mutadedModel #3/Gc VAL 375 
    32422 
    32423 > color #3/Gc:375 yellow
    32424 
    32425 > swapaa #3/Gc:377 VAL
    32426 
    32427 Using Dunbrack library 
    32428 mutadedModel #3/Gc ILE 377: phi -79.0, psi -44.1 trans 
    32429 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/Gc VAL 377 
    32430 
    32431 > color #3/Gc:377 yellow
    32432 
    32433 > swapaa #3/Gc:380 TYR
    32434 
    32435 Using Dunbrack library 
    32436 mutadedModel #3/Gc TRP 380: phi -83.3, psi -21.7 trans 
    32437 Applying TYR rotamer (chi angles: -172.1 76.2) to mutadedModel #3/Gc TYR 380 
    32438 
    32439 > color #3/Gc:380 yellow
    32440 
    32441 > swapaa #3/Gc:381 THR
    32442 
    32443 Using Dunbrack library 
    32444 mutadedModel #3/Gc CYS 381: phi -70.8, psi -41.9 trans 
    32445 Applying THR rotamer (chi angles: 59.0) to mutadedModel #3/Gc THR 381 
    32446 
    32447 > color #3/Gc:381 yellow
    32448 
    32449 > swapaa #3/Gc:382 ILE
    32450 
    32451 Using Dunbrack library 
    32452 mutadedModel #3/Gc ASN 382: phi -64.2, psi -34.4 trans 
    32453 Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/Gc ILE 382 
    32454 
    32455 > color #3/Gc:382 yellow
    32456 
    32457 > swapaa #3/Gc:383 ALA
    32458 
    32459 Using Dunbrack library 
    32460 Swapping mutadedModel #3/Gc SER 383 to ALA 
    32461 
    32462 > color #3/Gc:383 yellow
    32463 
    32464 > swapaa #3/Gc:385 TRP
    32465 
    32466 Using Dunbrack library 
    32467 mutadedModel #3/Gc TYR 385: phi -72.4, psi -24.8 trans 
    32468 Applying TRP rotamer (chi angles: -69.9 82.3) to mutadedModel #3/Gc TRP 385 
    32469 
    32470 > color #3/Gc:385 yellow
    32471 
    32472 > swapaa #3/Gc:386 CYS
    32473 
    32474 Using Dunbrack library 
    32475 mutadedModel #3/Gc ASN 386: phi -77.7, psi -24.7 trans 
    32476 Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/Gc CYS 386 
    32477 
    32478 > color #3/Gc:386 yellow
    32479 
    32480 > swapaa #3/Gc:387 ARG
    32481 
    32482 Using Dunbrack library 
    32483 mutadedModel #3/Gc LEU 387: phi -75.8, psi -24.2 trans 
    32484 Applying ARG rotamer (chi angles: -68.3 178.7 -179.9 175.4) to mutadedModel
    32485 #3/Gc ARG 387 
    32486 
    32487 > color #3/Gc:387 yellow
    32488 
    32489 > swapaa #3/Gc:391 LYS
    32490 
    32491 Using Dunbrack library 
    32492 mutadedModel #3/Gc GLU 391: phi -92.7, psi -58.9 trans 
    32493 Applying LYS rotamer (chi angles: -177.6 176.9 -176.1 -65.8) to mutadedModel
    32494 #3/Gc LYS 391 
    32495 
    32496 > color #3/Gc:391 yellow
    32497 
    32498 > swapaa #3/Gc:392 MET
    32499 
    32500 Using Dunbrack library 
    32501 mutadedModel #3/Gc GLN 392: phi -158.0, psi 101.1 trans 
    32502 Applying MET rotamer (chi angles: 54.8 92.3 -116.4) to mutadedModel #3/Gc MET
    32503 392 
    32504 
    32505 > color #3/Gc:392 yellow
    32506 
    32507 > swapaa #3/Gc:393 LEU
    32508 
    32509 Using Dunbrack library 
    32510 mutadedModel #3/Gc GLU 393: phi -102.4, psi 108.0 trans 
    32511 Applying LEU rotamer (chi angles: 178.4 62.2) to mutadedModel #3/Gc LEU 393 
    32512 
    32513 > color #3/Gc:393 yellow
    32514 
    32515 > swapaa #3/Gc:396 ASN
    32516 
    32517 Using Dunbrack library 
    32518 mutadedModel #3/Gc ILE 396: phi -66.3, psi -42.6 trans 
    32519 Applying ASN rotamer (chi angles: 61.9 -6.4) to mutadedModel #3/Gc ASN 396 
    32520 
    32521 > color #3/Gc:396 yellow
    32522 
    32523 > swapaa #3/Gc:397 GLU
    32524 
    32525 Using Dunbrack library 
    32526 mutadedModel #3/Gc LEU 397: phi -66.3, psi -37.7 trans 
    32527 Applying GLU rotamer (chi angles: -177.3 63.2 19.3) to mutadedModel #3/Gc GLU
    32528 397 
    32529 
    32530 > color #3/Gc:397 yellow
    32531 
    32532 > swapaa #3/Gc:398 LEU
    32533 
    32534 Using Dunbrack library 
    32535 mutadedModel #3/Gc MET 398: phi -72.0, psi -34.6 trans 
    32536 Applying LEU rotamer (chi angles: -174.3 58.9) to mutadedModel #3/Gc LEU 398 
    32537 
    32538 > color #3/Gc:398 yellow
    32539 
    32540 > swapaa #3/Gc:400 GLN
    32541 
    32542 Using Dunbrack library 
    32543 mutadedModel #3/Gc ARG 400: phi -73.9, psi -38.4 trans 
    32544 Applying GLN rotamer (chi angles: -69.0 176.9 -24.5) to mutadedModel #3/Gc GLN
    32545 400 
    32546 
    32547 > color #3/Gc:400 yellow
    32548 
    32549 > swapaa #3/Gc:401 ALA
    32550 
    32551 Using Dunbrack library 
    32552 Swapping mutadedModel #3/Gc GLY 401 to ALA 
    32553 
    32554 > color #3/Gc:401 yellow
    32555 
    32556 > swapaa #3/Gc:402 LYS
    32557 
    32558 Using Dunbrack library 
    32559 mutadedModel #3/Gc GLU 402: phi -61.2, psi -35.3 trans 
    32560 Applying LYS rotamer (chi angles: -70.5 -179.1 -177.8 -64.9) to mutadedModel
    32561 #3/Gc LYS 402 
    32562 
    32563 > color #3/Gc:402 yellow
    32564 
    32565 > swapaa #3/Gc:403 VAL
    32566 
    32567 Using Dunbrack library 
    32568 mutadedModel #3/Gc LEU 403: phi -66.4, psi -50.4 trans 
    32569 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/Gc VAL 403 
    32570 
    32571 > color #3/Gc:403 yellow
    32572 
    32573 > swapaa #3/Gc:405 MET
    32574 
    32575 Using Dunbrack library 
    32576 mutadedModel #3/Gc LYS 405: phi -69.4, psi -49.4 trans 
    32577 Applying MET rotamer (chi angles: -176.4 177.0 178.1) to mutadedModel #3/Gc
    32578 MET 405 
    32579 
    32580 > color #3/Gc:405 yellow
    32581 
    32582 > swapaa #3/Gc:406 LYS
    32583 
    32584 Using Dunbrack library 
    32585 mutadedModel #3/Gc ARG 406: phi -62.8, psi -34.8 trans 
    32586 Applying LYS rotamer (chi angles: -62.7 -76.1 85.2 173.1) to mutadedModel
    32587 #3/Gc LYS 406 
    32588 
    32589 > color #3/Gc:406 yellow
    32590 
    32591 > swapaa #3/Gc:407 ALA
    32592 
    32593 Using Dunbrack library 
    32594 Swapping mutadedModel #3/Gc SER 407 to ALA 
    32595 
    32596 > color #3/Gc:407 yellow
    32597 
    32598 > swapaa #3/Gc:408 GLN
    32599 
    32600 Using Dunbrack library 
    32601 mutadedModel #3/Gc PHE 408: phi -79.7, psi -11.8 trans 
    32602 Applying GLN rotamer (chi angles: -66.1 178.6 126.9) to mutadedModel #3/Gc GLN
    32603 408 
    32604 
    32605 > color #3/Gc:408 yellow
    32606 
    32607 > swapaa #3/Gc:410 LEU
    32608 
    32609 Using Dunbrack library 
    32610 mutadedModel #3/Gc MET 410: phi -71.7, psi -47.4 trans 
    32611 Applying LEU rotamer (chi angles: -68.8 172.0) to mutadedModel #3/Gc LEU 410 
    32612 
    32613 > color #3/Gc:410 yellow
    32614 
    32615 > swapaa #3/Gc:411 PHE
    32616 
    32617 Using Dunbrack library 
    32618 mutadedModel #3/Gc TYR 411: phi -71.2, psi -19.2 trans 
    32619 Applying PHE rotamer (chi angles: -72.3 -17.3) to mutadedModel #3/Gc PHE 411 
    32620 
    32621 > color #3/Gc:411 yellow
    32622 
    32623 > swapaa #3/Gc:412 ASN
    32624 
    32625 Using Dunbrack library 
    32626 mutadedModel #3/Gc LYS 412: phi -78.9, psi -22.5 trans 
    32627 Applying ASN rotamer (chi angles: -169.1 173.6) to mutadedModel #3/Gc ASN 412 
    32628 
    32629 > color #3/Gc:412 yellow
    32630 
    32631 > swapaa #3/Gc:413 MET
    32632 
    32633 Using Dunbrack library 
    32634 mutadedModel #3/Gc ARG 413: phi -92.3, psi 8.6 trans 
    32635 Applying MET rotamer (chi angles: -65.0 177.2 70.0) to mutadedModel #3/Gc MET
    32636 413 
    32637 
    32638 > color #3/Gc:413 yellow
    32639 
    32640 > swapaa #3/Gc:416 SER
    32641 
    32642 Using Dunbrack library 
    32643 mutadedModel #3/Gc VAL 416: phi -78.1, psi -37.8 trans 
    32644 Applying SER rotamer (chi angles: 179.9) to mutadedModel #3/Gc SER 416 
    32645 
    32646 > color #3/Gc:416 yellow
    32647 
    32648 > swapaa #3/Gc:417 ALA
    32649 
    32650 Using Dunbrack library 
    32651 Swapping mutadedModel #3/Gc ARG 417 to ALA 
    32652 
    32653 > color #3/Gc:417 yellow
    32654 
    32655 > swapaa #3/Gc:418 ASN
    32656 
    32657 Using Dunbrack library 
    32658 mutadedModel #3/Gc LYS 418: phi -64.2, psi -40.2 trans 
    32659 Applying ASN rotamer (chi angles: -73.2 -20.5) to mutadedModel #3/Gc ASN 418 
    32660 
    32661 > color #3/Gc:418 yellow
    32662 
    32663 > swapaa #3/Gc:419 SER
    32664 
    32665 Using Dunbrack library 
    32666 mutadedModel #3/Gc THR 419: phi -65.7, psi -42.0 trans 
    32667 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 419 
    32668 
    32669 > color #3/Gc:419 yellow
    32670 
    32671 > swapaa #3/Gc:420 ALA
    32672 
    32673 Using Dunbrack library 
    32674 Swapping mutadedModel #3/Gc GLY 420 to ALA 
    32675 
    32676 > color #3/Gc:420 yellow
    32677 
    32678 > swapaa #3/Gc:421 LYS
    32679 
    32680 Using Dunbrack library 
    32681 mutadedModel #3/Gc ARG 421: phi -77.2, psi -35.9 trans 
    32682 Applying LYS rotamer (chi angles: 64.8 93.8 174.4 178.2) to mutadedModel #3/Gc
    32683 LYS 421 
    32684 
    32685 > color #3/Gc:421 yellow
    32686 
    32687 > swapaa #3/Gc:422 ASP
    32688 
    32689 Using Dunbrack library 
    32690 mutadedModel #3/Gc GLU 422: phi -67.2, psi -38.8 trans 
    32691 Applying ASP rotamer (chi angles: -172.4 63.2) to mutadedModel #3/Gc ASP 422 
    32692 
    32693 > color #3/Gc:422 yellow
    32694 
    32695 > swapaa #3/Gc:427 VAL
    32696 
    32697 Using Dunbrack library 
    32698 mutadedModel #3/Gc LEU 427: phi -78.6, psi -15.1 trans 
    32699 Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/Gc VAL 427 
    32700 
    32701 > color #3/Gc:427 yellow
    32702 
    32703 > swapaa #3/Gc:428 LEU
    32704 
    32705 Using Dunbrack library 
    32706 mutadedModel #3/Gc ILE 428: phi -88.5, psi -25.4 trans 
    32707 Applying LEU rotamer (chi angles: -176.9 59.7) to mutadedModel #3/Gc LEU 428 
    32708 
    32709 > color #3/Gc:428 yellow
    32710 
    32711 > swapaa #3/Gc:429 HIS
    32712 
    32713 Using Dunbrack library 
    32714 mutadedModel #3/Gc TYR 429: phi -107.2, psi -21.0 trans 
    32715 Applying HIS rotamer (chi angles: -63.6 80.5) to mutadedModel #3/Gc HIS 429 
    32716 
    32717 > color #3/Gc:429 yellow
    32718 
    32719 > swapaa #3/Gc:431 GLY
    32720 
    32721 Using Dunbrack library 
    32722 Swapping mutadedModel #3/Gc GLU 431 to GLY 
    32723 
    32724 > color #3/Gc:431 yellow
    32725 
    32726 > swapaa #3/Gc:434 VAL
    32727 
    32728 Using Dunbrack library 
    32729 mutadedModel #3/Gc ASP 434: phi -46.4, psi 97.8 trans 
    32730 Applying VAL rotamer (chi angles: 177.1) to mutadedModel #3/Gc VAL 434 
    32731 
    32732 > color #3/Gc:434 yellow
    32733 
    32734 > swapaa #3/Gc:436 LEU
    32735 
    32736 Using Dunbrack library 
    32737 mutadedModel #3/Gc MET 436: phi -88.1, psi -28.1 trans 
    32738 Applying LEU rotamer (chi angles: -176.9 59.7) to mutadedModel #3/Gc LEU 436 
    32739 
    32740 > color #3/Gc:436 yellow
    32741 
    32742 > swapaa #3/Gc:437 THR
    32743 
    32744 Using Dunbrack library 
    32745 mutadedModel #3/Gc PRO 437: phi -63.5, psi -31.4 trans 
    32746 Applying THR rotamer (chi angles: 59.1) to mutadedModel #3/Gc THR 437 
    32747 
    32748 > color #3/Gc:437 yellow
    32749 
    32750 > swapaa #3/Gc:439 MET
    32751 
    32752 Using Dunbrack library 
    32753 mutadedModel #3/Gc ARG 439: phi -68.4, psi -28.7 trans 
    32754 Applying MET rotamer (chi angles: -175.1 176.5 178.1) to mutadedModel #3/Gc
    32755 MET 439 
    32756 
    32757 > color #3/Gc:439 yellow
    32758 
    32759 > swapaa #3/Gc:440 TYR
    32760 
    32761 Using Dunbrack library 
    32762 mutadedModel #3/Gc ARG 440: phi -64.8, psi -38.1 trans 
    32763 Applying TYR rotamer (chi angles: -72.7 -11.9) to mutadedModel #3/Gc TYR 440 
    32764 
    32765 > color #3/Gc:440 yellow
    32766 
    32767 > swapaa #3/Gc:441 ASP
    32768 
    32769 Using Dunbrack library 
    32770 mutadedModel #3/Gc LYS 441: phi -63.8, psi -39.8 trans 
    32771 Applying ASP rotamer (chi angles: -71.8 -15.3) to mutadedModel #3/Gc ASP 441 
    32772 
    32773 > color #3/Gc:441 yellow
    32774 
    32775 > swapaa #3/Gc:443 ILE
    32776 
    32777 Using Dunbrack library 
    32778 mutadedModel #3/Gc VAL 443: phi -76.2, psi -31.4 trans 
    32779 Applying ILE rotamer (chi angles: -61.5 -58.1) to mutadedModel #3/Gc ILE 443 
    32780 
    32781 > color #3/Gc:443 yellow
    32782 
    32783 > swapaa #3/Gc:444 ASP
    32784 
    32785 Using Dunbrack library 
    32786 mutadedModel #3/Gc LYS 444: phi -73.3, psi -20.7 trans 
    32787 Applying ASP rotamer (chi angles: 60.0 35.9) to mutadedModel #3/Gc ASP 444 
    32788 
    32789 > color #3/Gc:444 yellow
    32790 
    32791 > swapaa #3/Gc:446 THR
    32792 
    32793 Using Dunbrack library 
    32794 mutadedModel #3/Gc VAL 446: phi -81.4, psi 104.3 trans 
    32795 Applying THR rotamer (chi angles: -59.6) to mutadedModel #3/Gc THR 446 
    32796 
    32797 > color #3/Gc:446 yellow
    32798 
    32799 > swapaa #3/Gc:448 ALA
    32800 
    32801 Using Dunbrack library 
    32802 Swapping mutadedModel #3/Gc SER 448 to ALA 
    32803 
    32804 > color #3/Gc:448 yellow
    32805 
    32806 > swapaa #3/Gc:449 SER
    32807 
    32808 Using Dunbrack library 
    32809 mutadedModel #3/Gc ASP 449: phi -66.0, psi -41.9 trans 
    32810 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 449 
    32811 
    32812 > color #3/Gc:449 yellow
    32813 
    32814 > swapaa #3/Gc:450 ASN
    32815 
    32816 Using Dunbrack library 
    32817 mutadedModel #3/Gc ARG 450: phi -56.1, psi -40.3 trans 
    32818 Applying ASN rotamer (chi angles: -173.9 29.2) to mutadedModel #3/Gc ASN 450 
    32819 
    32820 > color #3/Gc:450 yellow
    32821 
    32822 > swapaa #3/Gc:452 GLN
    32823 
    32824 Using Dunbrack library 
    32825 mutadedModel #3/Gc LEU 452: phi -60.2, psi -54.5 trans 
    32826 Applying GLN rotamer (chi angles: -178.7 -179.8 8.5) to mutadedModel #3/Gc GLN
    32827 452 
    32828 
    32829 > color #3/Gc:452 yellow
    32830 
    32831 > swapaa #3/Gc:454 VAL
    32832 
    32833 Using Dunbrack library 
    32834 mutadedModel #3/Gc THR 454: phi -60.9, psi -36.2 trans 
    32835 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 454 
    32836 
    32837 > color #3/Gc:454 yellow
    32838 
    32839 > swapaa #3/Gc:457 HIS
    32840 
    32841 Using Dunbrack library 
    32842 mutadedModel #3/Gc ARG 457: phi -60.2, psi -57.7 trans 
    32843 Applying HIS rotamer (chi angles: -71.2 -159.8) to mutadedModel #3/Gc HIS 457 
    32844 
    32845 > color #3/Gc:457 yellow
    32846 
    32847 > swapaa #3/Gc:460 TYR
    32848 
    32849 Using Dunbrack library 
    32850 mutadedModel #3/Gc PHE 460: phi -95.9, psi 79.4 trans 
    32851 Applying TYR rotamer (chi angles: 63.8 -0.5) to mutadedModel #3/Gc TYR 460 
    32852 
    32853 > color #3/Gc:460 yellow
    32854 
    32855 > swapaa #3/Gc:466 TYR
    32856 
    32857 Using Dunbrack library 
    32858 mutadedModel #3/Gc PHE 466: phi -125.6, psi 140.0 trans 
    32859 Applying TYR rotamer (chi angles: -62.6 88.5) to mutadedModel #3/Gc TYR 466 
    32860 
    32861 > color #3/Gc:466 yellow
    32862 
    32863 > swapaa #3/Gc:467 SER
    32864 
    32865 Using Dunbrack library 
    32866 mutadedModel #3/Gc ALA 467: phi -129.6, psi 132.2 trans 
    32867 Applying SER rotamer (chi angles: 177.2) to mutadedModel #3/Gc SER 467 
    32868 
    32869 > color #3/Gc:467 yellow
    32870 
    32871 > swapaa #3/Gc:468 TYR
    32872 
    32873 Using Dunbrack library 
    32874 mutadedModel #3/Gc ARG 468: phi -120.6, psi 147.3 trans 
    32875 Applying TYR rotamer (chi angles: -64.0 88.9) to mutadedModel #3/Gc TYR 468 
    32876 
    32877 > color #3/Gc:468 yellow
    32878 
    32879 > swapaa #3/Gc:471 TYR
    32880 
    32881 Using Dunbrack library 
    32882 mutadedModel #3/Gc ARG 471: phi -80.5, psi 87.8 trans 
    32883 Applying TYR rotamer (chi angles: -173.1 72.3) to mutadedModel #3/Gc TYR 471 
    32884 
    32885 > color #3/Gc:471 yellow
    32886 
    32887 > swapaa #3/Gc:474 ALA
    32888 
    32889 Using Dunbrack library 
    32890 Swapping mutadedModel #3/Gc ASP 474 to ALA 
    32891 
    32892 > color #3/Gc:474 yellow
    32893 
    32894 > swapaa #3/Gc:475 ILE
    32895 
    32896 Using Dunbrack library 
    32897 mutadedModel #3/Gc GLU 475: phi -74.1, psi 141.1 trans 
    32898 Applying ILE rotamer (chi angles: -64.7 169.9) to mutadedModel #3/Gc ILE 475 
    32899 
    32900 > color #3/Gc:475 yellow
    32901 
    32902 > swapaa #3/Gc:478 TYR
    32903 
    32904 Using Dunbrack library 
    32905 mutadedModel #3/Gc TRP 478: phi -101.0, psi -16.9 trans 
    32906 Applying TYR rotamer (chi angles: -176.1 76.3) to mutadedModel #3/Gc TYR 478 
    32907 
    32908 > color #3/Gc:478 yellow
    32909 
    32910 > swapaa #3/Gc:479 ASP
    32911 
    32912 Using Dunbrack library 
    32913 mutadedModel #3/Gc CYS 479: phi -71.6, psi -38.7 trans 
    32914 Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/Gc ASP 479 
    32915 
    32916 > color #3/Gc:479 yellow
    32917 
    32918 > swapaa #3/Gc:480 TRP
    32919 
    32920 Using Dunbrack library 
    32921 mutadedModel #3/Gc ARG 480: phi -74.3, psi -44.3 trans 
    32922 Applying TRP rotamer (chi angles: -178.6 -99.3) to mutadedModel #3/Gc TRP 480 
    32923 
    32924 > color #3/Gc:480 yellow
    32925 
    32926 > swapaa #3/Gc:481 THR
    32927 
    32928 Using Dunbrack library 
    32929 mutadedModel #3/Gc SER 481: phi -71.7, psi -19.0 trans 
    32930 Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/Gc THR 481 
    32931 
    32932 > color #3/Gc:481 yellow
    32933 
    32934 > swapaa #3/Gc:482 GLN
    32935 
    32936 Using Dunbrack library 
    32937 mutadedModel #3/Gc MET 482: phi -70.3, psi -16.6 trans 
    32938 Applying GLN rotamer (chi angles: 68.6 -177.0 -76.6) to mutadedModel #3/Gc GLN
    32939 482 
    32940 
    32941 > color #3/Gc:482 yellow
    32942 
    32943 > swapaa #3/Gc:483 HIS
    32944 
    32945 Using Dunbrack library 
    32946 mutadedModel #3/Gc PHE 483: phi -85.4, psi 2.2 trans 
    32947 Applying HIS rotamer (chi angles: -65.8 81.1) to mutadedModel #3/Gc HIS 483 
    32948 
    32949 > color #3/Gc:483 yellow
    32950 
    32951 > swapaa #3/Gc:484 TRP
    32952 
    32953 Using Dunbrack library 
    32954 mutadedModel #3/Gc TYR 484: phi -87.0, psi -2.7 trans 
    32955 Applying TRP rotamer (chi angles: -66.6 -16.1) to mutadedModel #3/Gc TRP 484 
    32956 
    32957 > color #3/Gc:484 yellow
    32958 
    32959 > swapaa #3/Gc:485 SER
    32960 
    32961 Using Dunbrack library 
    32962 mutadedModel #3/Gc ALA 485: phi -100.6, psi 23.8 trans 
    32963 Applying SER rotamer (chi angles: 61.3) to mutadedModel #3/Gc SER 485 
    32964 
    32965 > color #3/Gc:485 yellow
    32966 
    32967 > swapaa #3/Gc:486 TYR
    32968 
    32969 Using Dunbrack library 
    32970 mutadedModel #3/Gc ARG 486: phi -147.3, psi 150.0 trans 
    32971 Applying TYR rotamer (chi angles: -175.0 79.7) to mutadedModel #3/Gc TYR 486 
    32972 
    32973 > color #3/Gc:486 yellow
    32974 
    32975 > swapaa #3/Gc:487 LYS
    32976 
    32977 Using Dunbrack library 
    32978 mutadedModel #3/Gc ARG 487: phi -100.5, psi 121.4 trans 
    32979 Applying LYS rotamer (chi angles: -178.1 71.4 -179.6 -63.2) to mutadedModel
    32980 #3/Gc LYS 487 
    32981 
    32982 > color #3/Gc:487 yellow
    32983 
    32984 > swapaa #3/Gc:490 TYR
    32985 
    32986 Using Dunbrack library 
    32987 mutadedModel #3/Gc THR 490: phi 0.8, psi none trans 
    32988 Applying TYR rotamer (chi angles: -67.2 -16.7) to mutadedModel #3/Gc TYR 490 
    32989 
    32990 > color #3/Gc:490 yellow
    32991 
    32992 > select #3/A
    32993 
    32994 2003 atoms, 2055 bonds, 1 pseudobond, 254 residues, 2 models selected 
    32995 
    32996 > bond #3/A:5@C #3/A:6@N reasonable false
    32997 
    32998 Created 0 bonds 
    32999 
    33000 > bond #3/A:6@C #3/A:7@N reasonable false
    33001 
    33002 Created 0 bonds 
    33003 
    33004 > bond #3/A:7@C #3/A:8@N reasonable false
    33005 
    33006 Created 0 bonds 
    33007 
    33008 > bond #3/A:8@C #3/A:9@N reasonable false
    33009 
    33010 Created 0 bonds 
    33011 
    33012 > bond #3/A:9@C #3/A:10@N reasonable false
    33013 
    33014 Created 1 bond 
    33015 
    33016 > bond #3/A:124@C #3/A:125@N reasonable false
    33017 
    33018 Created 0 bonds 
    33019 
    33020 > bond #3/A:125@C #3/A:126@N reasonable false
    33021 
    33022 Created 0 bonds 
    33023 
    33024 > bond #3/A:126@C #3/A:127@N reasonable false
    33025 
    33026 Created 0 bonds 
    33027 
    33028 > bond #3/A:127@C #3/A:128@N reasonable false
    33029 
    33030 Created 0 bonds 
    33031 
    33032 > bond #3/A:128@C #3/A:129@N reasonable false
    33033 
    33034 Created 0 bonds 
    33035 
    33036 > bond #3/A:129@C #3/A:130@N reasonable false
    33037 
    33038 Created 0 bonds 
    33039 
    33040 > bond #3/A:130@C #3/A:131@N reasonable false
    33041 
    33042 Created 0 bonds 
    33043 
    33044 > bond #3/A:131@C #3/A:132@N reasonable false
    33045 
    33046 Created 0 bonds 
    33047 
    33048 > bond #3/A:132@C #3/A:133@N reasonable false
    33049 
    33050 Created 0 bonds 
    33051 
    33052 > bond #3/A:133@C #3/A:134@N reasonable false
    33053 
    33054 Created 0 bonds 
    33055 
    33056 > bond #3/A:134@C #3/A:135@N reasonable false
    33057 
    33058 Created 0 bonds 
    33059 
    33060 > bond #3/A:135@C #3/A:136@N reasonable false
    33061 
    33062 Created 0 bonds 
    33063 
    33064 > bond #3/A:136@C #3/A:137@N reasonable false
    33065 
    33066 Created 0 bonds 
    33067 
    33068 > bond #3/A:137@C #3/A:138@N reasonable false
    33069 
    33070 Created 0 bonds 
    33071 
    33072 > bond #3/A:138@C #3/A:139@N reasonable false
    33073 
    33074 Created 0 bonds 
    33075 
    33076 > bond #3/A:139@C #3/A:140@N reasonable false
    33077 
    33078 Created 0 bonds 
    33079 
    33080 > bond #3/A:140@C #3/A:141@N reasonable false
    33081 
    33082 Created 0 bonds 
    33083 
    33084 > bond #3/A:141@C #3/A:142@N reasonable false
    33085 
    33086 Created 0 bonds 
    33087 
    33088 > bond #3/A:142@C #3/A:143@N reasonable false
    33089 
    33090 Created 0 bonds 
    33091 
    33092 > bond #3/A:143@C #3/A:144@N reasonable false
    33093 
    33094 Created 0 bonds 
    33095 
    33096 > bond #3/A:144@C #3/A:145@N reasonable false
    33097 
    33098 Created 0 bonds 
    33099 
    33100 > bond #3/A:145@C #3/A:146@N reasonable false
    33101 
    33102 Created 1 bond 
    33103 
    33104 > bond #3/A:171@C #3/A:172@N reasonable false
    33105 
    33106 Created 1 bond 
    33107 
    33108 > bond #3/A:46@C #3/A:47@N reasonable false
    33109 
    33110 Created 0 bonds 
    33111 
    33112 > bond #3/A:47@C #3/A:48@N reasonable false
    33113 
    33114 Created 0 bonds 
    33115 
    33116 > bond #3/A:48@C #3/A:49@N reasonable false
    33117 
    33118 Created 0 bonds 
    33119 
    33120 > bond #3/A:49@C #3/A:50@N reasonable false
    33121 
    33122 Created 1 bond 
    33123 
    33124 > bond #3/A:50@C #3/A:51@N reasonable false
    33125 
    33126 Created 0 bonds 
    33127 
    33128 > bond #3/A:51@C #3/A:52@N reasonable false
    33129 
    33130 Created 0 bonds 
    33131 
    33132 > bond #3/A:52@C #3/A:53@N reasonable false
    33133 
    33134 Created 0 bonds 
    33135 
    33136 > bond #3/A:53@C #3/A:54@N reasonable false
    33137 
    33138 Created 0 bonds 
    33139 
    33140 > bond #3/A:54@C #3/A:55@N reasonable false
    33141 
    33142 Created 0 bonds 
    33143 
    33144 > bond #3/A:55@C #3/A:56@N reasonable false
    33145 
    33146 Created 0 bonds 
    33147 
    33148 > bond #3/A:56@C #3/A:57@N reasonable false
    33149 
    33150 Created 0 bonds 
    33151 
    33152 > bond #3/A:57@C #3/A:58@N reasonable false
    33153 
    33154 Created 0 bonds 
    33155 
    33156 > bond #3/A:58@C #3/A:59@N reasonable false
    33157 
    33158 Created 0 bonds 
    33159 
    33160 > bond #3/A:59@C #3/A:60@N reasonable false
    33161 
    33162 Created 0 bonds 
    33163 
    33164 > bond #3/A:60@C #3/A:61@N reasonable false
    33165 
    33166 Created 0 bonds 
    33167 
    33168 > bond #3/A:61@C #3/A:62@N reasonable false
    33169 
    33170 Created 0 bonds 
    33171 
    33172 > bond #3/A:62@C #3/A:63@N reasonable false
    33173 
    33174 Created 0 bonds 
    33175 
    33176 > bond #3/A:63@C #3/A:64@N reasonable false
    33177 
    33178 Created 0 bonds 
    33179 
    33180 > bond #3/A:64@C #3/A:65@N reasonable false
    33181 
    33182 Created 0 bonds 
    33183 
    33184 > bond #3/A:65@C #3/A:66@N reasonable false
    33185 
    33186 Created 0 bonds 
    33187 
    33188 > bond #3/A:66@C #3/A:67@N reasonable false
    33189 
    33190 Created 0 bonds 
    33191 
    33192 > bond #3/A:67@C #3/A:68@N reasonable false
    33193 
    33194 Created 0 bonds 
    33195 
    33196 > bond #3/A:68@C #3/A:69@N reasonable false
    33197 
    33198 Created 0 bonds 
    33199 
    33200 > bond #3/A:69@C #3/A:70@N reasonable false
    33201 
    33202 Created 0 bonds 
    33203 
    33204 > bond #3/A:70@C #3/A:71@N reasonable false
    33205 
    33206 Created 0 bonds 
    33207 
    33208 > bond #3/A:71@C #3/A:72@N reasonable false
    33209 
    33210 Created 0 bonds 
    33211 
    33212 > bond #3/A:72@C #3/A:73@N reasonable false
    33213 
    33214 Created 0 bonds 
    33215 
    33216 > bond #3/A:73@C #3/A:74@N reasonable false
    33217 
    33218 Created 0 bonds 
    33219 
    33220 > bond #3/A:74@C #3/A:75@N reasonable false
    33221 
    33222 Created 0 bonds 
    33223 
    33224 > bond #3/A:75@C #3/A:76@N reasonable false
    33225 
    33226 Created 0 bonds 
    33227 
    33228 > bond #3/A:76@C #3/A:77@N reasonable false
    33229 
    33230 Created 0 bonds 
    33231 
    33232 > bond #3/A:77@C #3/A:78@N reasonable false
    33233 
    33234 Created 0 bonds 
    33235 
    33236 > bond #3/A:78@C #3/A:79@N reasonable false
    33237 
    33238 Created 0 bonds 
    33239 
    33240 > bond #3/A:79@C #3/A:80@N reasonable false
    33241 
    33242 Created 0 bonds 
    33243 
    33244 > bond #3/A:80@C #3/A:81@N reasonable false
    33245 
    33246 Created 0 bonds 
    33247 
    33248 > bond #3/A:81@C #3/A:82@N reasonable false
    33249 
    33250 Created 0 bonds 
    33251 
    33252 > bond #3/A:82@C #3/A:83@N reasonable false
    33253 
    33254 Created 0 bonds 
    33255 
    33256 > bond #3/A:83@C #3/A:84@N reasonable false
    33257 
    33258 Created 0 bonds 
    33259 
    33260 > bond #3/A:84@C #3/A:85@N reasonable false
    33261 
    33262 Created 0 bonds 
    33263 
    33264 > bond #3/A:85@C #3/A:86@N reasonable false
    33265 
    33266 Created 0 bonds 
    33267 
    33268 > bond #3/A:86@C #3/A:87@N reasonable false
    33269 
    33270 Created 0 bonds 
    33271 
    33272 > bond #3/A:87@C #3/A:88@N reasonable false
    33273 
    33274 Created 0 bonds 
    33275 
    33276 > bond #3/A:88@C #3/A:89@N reasonable false
    33277 
    33278 Created 0 bonds 
    33279 
    33280 > bond #3/A:89@C #3/A:90@N reasonable false
    33281 
    33282 Created 0 bonds 
    33283 
    33284 > bond #3/A:90@C #3/A:91@N reasonable false
    33285 
    33286 Created 0 bonds 
    33287 
    33288 > bond #3/A:91@C #3/A:92@N reasonable false
    33289 
    33290 Created 0 bonds 
    33291 
    33292 > bond #3/A:92@C #3/A:93@N reasonable false
    33293 
    33294 Created 0 bonds 
    33295 
    33296 > bond #3/A:93@C #3/A:94@N reasonable false
    33297 
    33298 Created 0 bonds 
    33299 
    33300 > bond #3/A:94@C #3/A:95@N reasonable false
    33301 
    33302 Created 0 bonds 
    33303 
    33304 > bond #3/A:95@C #3/A:96@N reasonable false
    33305 
    33306 Created 0 bonds 
    33307 
    33308 > bond #3/A:96@C #3/A:97@N reasonable false
    33309 
    33310 Created 0 bonds 
    33311 
    33312 > bond #3/A:97@C #3/A:98@N reasonable false
    33313 
    33314 Created 0 bonds 
    33315 
    33316 > bond #3/A:98@C #3/A:99@N reasonable false
    33317 
    33318 Created 0 bonds 
    33319 
    33320 > bond #3/A:99@C #3/A:100@N reasonable false
    33321 
    33322 Created 0 bonds 
    33323 
    33324 > bond #3/A:100@C #3/A:101@N reasonable false
    33325 
    33326 Created 0 bonds 
    33327 
    33328 > bond #3/A:101@C #3/A:102@N reasonable false
    33329 
    33330 Created 0 bonds 
    33331 
    33332 > bond #3/A:102@C #3/A:103@N reasonable false
    33333 
    33334 Created 0 bonds 
    33335 
    33336 > bond #3/A:103@C #3/A:104@N reasonable false
    33337 
    33338 Created 0 bonds 
    33339 
    33340 > bond #3/A:104@C #3/A:105@N reasonable false
    33341 
    33342 Created 0 bonds 
    33343 
    33344 > bond #3/A:105@C #3/A:106@N reasonable false
    33345 
    33346 Created 0 bonds 
    33347 
    33348 > bond #3/A:106@C #3/A:107@N reasonable false
    33349 
    33350 Created 0 bonds 
    33351 
    33352 > bond #3/A:107@C #3/A:108@N reasonable false
    33353 
    33354 Created 0 bonds 
    33355 
    33356 > bond #3/A:108@C #3/A:109@N reasonable false
    33357 
    33358 Created 0 bonds 
    33359 
    33360 > bond #3/A:109@C #3/A:110@N reasonable false
    33361 
    33362 Created 0 bonds 
    33363 
    33364 > bond #3/A:110@C #3/A:111@N reasonable false
    33365 
    33366 Created 0 bonds 
    33367 
    33368 > bond #3/A:111@C #3/A:112@N reasonable false
    33369 
    33370 Created 0 bonds 
    33371 
    33372 > bond #3/A:112@C #3/A:113@N reasonable false
    33373 
    33374 Created 0 bonds 
    33375 
    33376 > bond #3/A:113@C #3/A:114@N reasonable false
    33377 
    33378 Created 0 bonds 
    33379 
    33380 > bond #3/A:114@C #3/A:115@N reasonable false
    33381 
    33382 Created 0 bonds 
    33383 
    33384 > bond #3/A:115@C #3/A:116@N reasonable false
    33385 
    33386 Created 0 bonds 
    33387 
    33388 > bond #3/A:116@C #3/A:117@N reasonable false
    33389 
    33390 Created 0 bonds 
    33391 
    33392 > bond #3/A:117@C #3/A:118@N reasonable false
    33393 
    33394 Created 0 bonds 
    33395 
    33396 > bond #3/A:118@C #3/A:119@N reasonable false
    33397 
    33398 Created 0 bonds 
    33399 
    33400 > bond #3/A:119@C #3/A:120@N reasonable false
    33401 
    33402 Created 0 bonds 
    33403 
    33404 > bond #3/A:120@C #3/A:121@N reasonable false
    33405 
    33406 Created 0 bonds 
    33407 
    33408 > bond #3/A:121@C #3/A:122@N reasonable false
    33409 
    33410 Created 0 bonds 
    33411 
    33412 > bond #3/A:122@C #3/A:123@N reasonable false
    33413 
    33414 Created 0 bonds 
    33415 
    33416 > bond #3/A:123@C #3/A:124@N reasonable false
    33417 
    33418 Created 1 bond 
    33419 
    33420 > bond #3/A:146@C #3/A:147@N reasonable false
    33421 
    33422 Created 0 bonds 
    33423 
    33424 > bond #3/A:147@C #3/A:148@N reasonable false
    33425 
    33426 Created 0 bonds 
    33427 
    33428 > bond #3/A:148@C #3/A:149@N reasonable false
    33429 
    33430 Created 0 bonds 
    33431 
    33432 > bond #3/A:149@C #3/A:150@N reasonable false
    33433 
    33434 Created 0 bonds 
    33435 
    33436 > bond #3/A:152@C #3/A:153@N reasonable false
    33437 
    33438 Created 0 bonds 
    33439 
    33440 > bond #3/A:153@C #3/A:154@N reasonable false
    33441 
    33442 Created 0 bonds 
    33443 
    33444 > bond #3/A:154@C #3/A:155@N reasonable false
    33445 
    33446 Created 0 bonds 
    33447 
    33448 > bond #3/A:155@C #3/A:156@N reasonable false
    33449 
    33450 Created 0 bonds 
    33451 
    33452 > bond #3/A:156@C #3/A:157@N reasonable false
    33453 
    33454 Created 0 bonds 
    33455 
    33456 > bond #3/A:157@C #3/A:158@N reasonable false
    33457 
    33458 Created 0 bonds 
    33459 
    33460 > bond #3/A:158@C #3/A:159@N reasonable false
    33461 
    33462 Created 0 bonds 
    33463 
    33464 > bond #3/A:159@C #3/A:160@N reasonable false
    33465 
    33466 Created 0 bonds 
    33467 
    33468 > bond #3/A:160@C #3/A:161@N reasonable false
    33469 
    33470 Created 0 bonds 
    33471 
    33472 > bond #3/A:161@C #3/A:162@N reasonable false
    33473 
    33474 Created 0 bonds 
    33475 
    33476 > bond #3/A:162@C #3/A:163@N reasonable false
    33477 
    33478 Created 0 bonds 
    33479 
    33480 > bond #3/A:163@C #3/A:164@N reasonable false
    33481 
    33482 Created 0 bonds 
    33483 
    33484 > bond #3/A:164@C #3/A:165@N reasonable false
    33485 
    33486 Created 0 bonds 
    33487 
    33488 > bond #3/A:165@C #3/A:166@N reasonable false
    33489 
    33490 Created 0 bonds 
    33491 
    33492 > bond #3/A:166@C #3/A:167@N reasonable false
    33493 
    33494 Created 0 bonds 
    33495 
    33496 > bond #3/A:167@C #3/A:168@N reasonable false
    33497 
    33498 Created 0 bonds 
    33499 
    33500 > bond #3/A:168@C #3/A:169@N reasonable false
    33501 
    33502 Created 0 bonds 
    33503 
    33504 > bond #3/A:169@C #3/A:170@N reasonable false
    33505 
    33506 Created 0 bonds 
    33507 
    33508 > bond #3/A:170@C #3/A:171@N reasonable false
    33509 
    33510 Created 1 bond 
    33511 
    33512 > bond #3/A:174@C #3/A:175@N reasonable false
    33513 
    33514 Created 0 bonds 
    33515 
    33516 > bond #3/A:175@C #3/A:176@N reasonable false
    33517 
    33518 Created 0 bonds 
    33519 
    33520 > bond #3/A:176@C #3/A:177@N reasonable false
    33521 
    33522 Created 0 bonds 
    33523 
    33524 > bond #3/A:177@C #3/A:178@N reasonable false
    33525 
    33526 Created 0 bonds 
    33527 
    33528 > bond #3/A:178@C #3/A:179@N reasonable false
    33529 
    33530 Created 0 bonds 
    33531 
    33532 > bond #3/A:179@C #3/A:180@N reasonable false
    33533 
    33534 Created 0 bonds 
    33535 
    33536 > bond #3/A:180@C #3/A:181@N reasonable false
    33537 
    33538 Created 0 bonds 
    33539 
    33540 > bond #3/A:181@C #3/A:182@N reasonable false
    33541 
    33542 Created 0 bonds 
    33543 
    33544 > bond #3/A:182@C #3/A:183@N reasonable false
    33545 
    33546 Created 0 bonds 
    33547 
    33548 > bond #3/A:183@C #3/A:184@N reasonable false
    33549 
    33550 Created 0 bonds 
    33551 
    33552 > bond #3/A:184@C #3/A:185@N reasonable false
    33553 
    33554 Created 0 bonds 
    33555 
    33556 > bond #3/A:185@C #3/A:186@N reasonable false
    33557 
    33558 Created 0 bonds 
    33559 
    33560 > bond #3/A:186@C #3/A:187@N reasonable false
    33561 
    33562 Created 0 bonds 
    33563 
    33564 > bond #3/A:187@C #3/A:188@N reasonable false
    33565 
    33566 Created 0 bonds 
    33567 
    33568 > bond #3/A:188@C #3/A:189@N reasonable false
    33569 
    33570 Created 0 bonds 
    33571 
    33572 > bond #3/A:189@C #3/A:190@N reasonable false
    33573 
    33574 Created 0 bonds 
    33575 
    33576 > bond #3/A:190@C #3/A:191@N reasonable false
    33577 
    33578 Created 0 bonds 
    33579 
    33580 > bond #3/A:191@C #3/A:192@N reasonable false
    33581 
    33582 Created 0 bonds 
    33583 
    33584 > bond #3/A:192@C #3/A:193@N reasonable false
    33585 
    33586 Created 0 bonds 
    33587 
    33588 > bond #3/A:193@C #3/A:194@N reasonable false
    33589 
    33590 Created 0 bonds 
    33591 
    33592 > bond #3/A:194@C #3/A:195@N reasonable false
    33593 
    33594 Created 0 bonds 
    33595 
    33596 > bond #3/A:195@C #3/A:196@N reasonable false
    33597 
    33598 Created 0 bonds 
    33599 
    33600 > bond #3/A:196@C #3/A:197@N reasonable false
    33601 
    33602 Created 0 bonds 
    33603 
    33604 > bond #3/A:197@C #3/A:198@N reasonable false
    33605 
    33606 Created 0 bonds 
    33607 
    33608 > bond #3/A:198@C #3/A:199@N reasonable false
    33609 
    33610 Created 0 bonds 
    33611 
    33612 > bond #3/A:199@C #3/A:200@N reasonable false
    33613 
    33614 Created 0 bonds 
    33615 
    33616 > bond #3/A:200@C #3/A:201@N reasonable false
    33617 
    33618 Created 0 bonds 
    33619 
    33620 > bond #3/A:201@C #3/A:202@N reasonable false
    33621 
    33622 Created 0 bonds 
    33623 
    33624 > bond #3/A:202@C #3/A:203@N reasonable false
    33625 
    33626 Created 0 bonds 
    33627 
    33628 > bond #3/A:203@C #3/A:204@N reasonable false
    33629 
    33630 Created 0 bonds 
    33631 
    33632 > bond #3/A:204@C #3/A:205@N reasonable false
    33633 
    33634 Created 0 bonds 
    33635 
    33636 > bond #3/A:205@C #3/A:206@N reasonable false
    33637 
    33638 Created 0 bonds 
    33639 
    33640 > bond #3/A:206@C #3/A:207@N reasonable false
    33641 
    33642 Created 0 bonds 
    33643 
    33644 > bond #3/A:207@C #3/A:208@N reasonable false
    33645 
    33646 Created 0 bonds 
    33647 
    33648 > bond #3/A:208@C #3/A:209@N reasonable false
    33649 
    33650 Created 0 bonds 
    33651 
    33652 > bond #3/A:209@C #3/A:210@N reasonable false
    33653 
    33654 Created 0 bonds 
    33655 
    33656 > bond #3/A:210@C #3/A:211@N reasonable false
    33657 
    33658 Created 0 bonds 
    33659 
    33660 > bond #3/A:211@C #3/A:212@N reasonable false
    33661 
    33662 Created 0 bonds 
    33663 
    33664 > bond #3/A:212@C #3/A:213@N reasonable false
    33665 
    33666 Created 0 bonds 
    33667 
    33668 > bond #3/A:213@C #3/A:214@N reasonable false
    33669 
    33670 Created 0 bonds 
    33671 
    33672 > bond #3/A:214@C #3/A:215@N reasonable false
    33673 
    33674 Created 0 bonds 
    33675 
    33676 > bond #3/A:215@C #3/A:216@N reasonable false
    33677 
    33678 Created 0 bonds 
    33679 
    33680 > bond #3/A:216@C #3/A:217@N reasonable false
    33681 
    33682 Created 0 bonds 
    33683 
    33684 > bond #3/A:217@C #3/A:218@N reasonable false
    33685 
    33686 Created 0 bonds 
    33687 
    33688 > bond #3/A:218@C #3/A:219@N reasonable false
    33689 
    33690 Created 0 bonds 
    33691 
    33692 > bond #3/A:219@C #3/A:220@N reasonable false
    33693 
    33694 Created 0 bonds 
    33695 
    33696 > bond #3/A:220@C #3/A:221@N reasonable false
    33697 
    33698 Created 0 bonds 
    33699 
    33700 > bond #3/A:221@C #3/A:222@N reasonable false
    33701 
    33702 Created 0 bonds 
    33703 
    33704 > bond #3/A:222@C #3/A:223@N reasonable false
    33705 
    33706 Created 0 bonds 
    33707 
    33708 > bond #3/A:223@C #3/A:224@N reasonable false
    33709 
    33710 Created 0 bonds 
    33711 
    33712 > bond #3/A:224@C #3/A:225@N reasonable false
    33713 
    33714 Created 0 bonds 
    33715 
    33716 > bond #3/A:225@C #3/A:226@N reasonable false
    33717 
    33718 Created 0 bonds 
    33719 
    33720 > bond #3/A:226@C #3/A:227@N reasonable false
    33721 
    33722 Created 0 bonds 
    33723 
    33724 > bond #3/A:227@C #3/A:228@N reasonable false
    33725 
    33726 Created 0 bonds 
    33727 
    33728 > bond #3/A:228@C #3/A:229@N reasonable false
    33729 
    33730 Created 0 bonds 
    33731 
    33732 > bond #3/A:229@C #3/A:230@N reasonable false
    33733 
    33734 Created 0 bonds 
    33735 
    33736 > bond #3/A:230@C #3/A:231@N reasonable false
    33737 
    33738 Created 0 bonds 
    33739 
    33740 > bond #3/A:231@C #3/A:232@N reasonable false
    33741 
    33742 Created 0 bonds 
    33743 
    33744 > bond #3/A:232@C #3/A:233@N reasonable false
    33745 
    33746 Created 0 bonds 
    33747 
    33748 > bond #3/A:233@C #3/A:234@N reasonable false
    33749 
    33750 Created 0 bonds 
    33751 
    33752 > bond #3/A:234@C #3/A:235@N reasonable false
    33753 
    33754 Created 0 bonds 
    33755 
    33756 > bond #3/A:235@C #3/A:236@N reasonable false
    33757 
    33758 Created 0 bonds 
    33759 
    33760 > bond #3/A:236@C #3/A:237@N reasonable false
    33761 
    33762 Created 0 bonds 
    33763 
    33764 > bond #3/A:237@C #3/A:238@N reasonable false
    33765 
    33766 Created 0 bonds 
    33767 
    33768 > bond #3/A:238@C #3/A:239@N reasonable false
    33769 
    33770 Created 0 bonds 
    33771 
    33772 > bond #3/A:239@C #3/A:240@N reasonable false
    33773 
    33774 Created 0 bonds 
    33775 
    33776 > bond #3/A:240@C #3/A:241@N reasonable false
    33777 
    33778 Created 0 bonds 
    33779 
    33780 > bond #3/A:241@C #3/A:242@N reasonable false
    33781 
    33782 Created 0 bonds 
    33783 
    33784 > bond #3/A:242@C #3/A:243@N reasonable false
    33785 
    33786 Created 0 bonds 
    33787 
    33788 > bond #3/A:243@C #3/A:244@N reasonable false
    33789 
    33790 Created 0 bonds 
    33791 
    33792 > bond #3/A:244@C #3/A:245@N reasonable false
    33793 
    33794 Created 0 bonds 
    33795 
    33796 > bond #3/A:245@C #3/A:246@N reasonable false
    33797 
    33798 Created 0 bonds 
    33799 
    33800 > bond #3/A:246@C #3/A:247@N reasonable false
    33801 
    33802 Created 0 bonds 
    33803 
    33804 > bond #3/A:247@C #3/A:248@N reasonable false
    33805 
    33806 Created 0 bonds 
    33807 
    33808 > bond #3/A:248@C #3/A:249@N reasonable false
    33809 
    33810 Created 0 bonds 
    33811 
    33812 > bond #3/A:249@C #3/A:250@N reasonable false
    33813 
    33814 Created 0 bonds 
    33815 
    33816 > bond #3/A:250@C #3/A:251@N reasonable false
    33817 
    33818 Created 0 bonds 
    33819 
    33820 > bond #3/A:251@C #3/A:252@N reasonable false
    33821 
    33822 Created 0 bonds 
    33823 
    33824 > bond #3/A:252@C #3/A:253@N reasonable false
    33825 
    33826 Created 0 bonds 
    33827 
    33828 > bond #3/A:253@C #3/A:254@N reasonable false
    33829 
    33830 Created 0 bonds 
    33831 
    33832 > bond #3/A:254@C #3/A:255@N reasonable false
    33833 
    33834 Created 0 bonds 
    33835 
    33836 > bond #3/A:255@C #3/A:256@N reasonable false
    33837 
    33838 Created 0 bonds 
    33839 
    33840 > bond #3/A:256@C #3/A:257@N reasonable false
    33841 
    33842 Created 0 bonds 
    33843 
    33844 > bond #3/A:257@C #3/A:258@N reasonable false
    33845 
    33846 Created 0 bonds 
    33847 
    33848 > bond #3/A:258@C #3/A:259@N reasonable false
    33849 
    33850 Created 0 bonds 
    33851 
    33852 > bond #3/A:10@C #3/A:11@N reasonable false
    33853 
    33854 Created 0 bonds 
    33855 
    33856 > bond #3/A:11@C #3/A:12@N reasonable false
    33857 
    33858 Created 0 bonds 
    33859 
    33860 > bond #3/A:12@C #3/A:13@N reasonable false
    33861 
    33862 Created 0 bonds 
    33863 
    33864 > bond #3/A:13@C #3/A:14@N reasonable false
    33865 
    33866 Created 0 bonds 
    33867 
    33868 > bond #3/A:14@C #3/A:15@N reasonable false
    33869 
    33870 Created 0 bonds 
    33871 
    33872 > bond #3/A:15@C #3/A:16@N reasonable false
    33873 
    33874 Created 0 bonds 
    33875 
    33876 > bond #3/A:16@C #3/A:17@N reasonable false
    33877 
    33878 Created 0 bonds 
    33879 
    33880 > bond #3/A:17@C #3/A:18@N reasonable false
    33881 
    33882 Created 0 bonds 
    33883 
    33884 > bond #3/A:18@C #3/A:19@N reasonable false
    33885 
    33886 Created 0 bonds 
    33887 
    33888 > bond #3/A:19@C #3/A:20@N reasonable false
    33889 
    33890 Created 0 bonds 
    33891 
    33892 > bond #3/A:20@C #3/A:21@N reasonable false
    33893 
    33894 Created 0 bonds 
    33895 
    33896 > bond #3/A:21@C #3/A:22@N reasonable false
    33897 
    33898 Created 0 bonds 
    33899 
    33900 > bond #3/A:22@C #3/A:23@N reasonable false
    33901 
    33902 Created 0 bonds 
    33903 
    33904 > bond #3/A:23@C #3/A:24@N reasonable false
    33905 
    33906 Created 0 bonds 
    33907 
    33908 > bond #3/A:24@C #3/A:25@N reasonable false
    33909 
    33910 Created 0 bonds 
    33911 
    33912 > bond #3/A:25@C #3/A:26@N reasonable false
    33913 
    33914 Created 0 bonds 
    33915 
    33916 > bond #3/A:26@C #3/A:27@N reasonable false
    33917 
    33918 Created 0 bonds 
    33919 
    33920 > bond #3/A:27@C #3/A:28@N reasonable false
    33921 
    33922 Created 0 bonds 
    33923 
    33924 > bond #3/A:28@C #3/A:29@N reasonable false
    33925 
    33926 Created 0 bonds 
    33927 
    33928 > bond #3/A:29@C #3/A:30@N reasonable false
    33929 
    33930 Created 0 bonds 
    33931 
    33932 > bond #3/A:30@C #3/A:31@N reasonable false
    33933 
    33934 Created 0 bonds 
    33935 
    33936 > bond #3/A:31@C #3/A:32@N reasonable false
    33937 
    33938 Created 0 bonds 
    33939 
    33940 > bond #3/A:32@C #3/A:33@N reasonable false
    33941 
    33942 Created 0 bonds 
    33943 
    33944 > bond #3/A:33@C #3/A:34@N reasonable false
    33945 
    33946 Created 0 bonds 
    33947 
    33948 > bond #3/A:34@C #3/A:35@N reasonable false
    33949 
    33950 Created 0 bonds 
    33951 
    33952 > bond #3/A:35@C #3/A:36@N reasonable false
    33953 
    33954 Created 0 bonds 
    33955 
    33956 > bond #3/A:36@C #3/A:37@N reasonable false
    33957 
    33958 Created 0 bonds 
    33959 
    33960 > bond #3/A:37@C #3/A:38@N reasonable false
    33961 
    33962 Created 0 bonds 
    33963 
    33964 > bond #3/A:38@C #3/A:39@N reasonable false
    33965 
    33966 Created 0 bonds 
    33967 
    33968 > bond #3/A:39@C #3/A:40@N reasonable false
    33969 
    33970 Created 0 bonds 
    33971 
    33972 > bond #3/A:40@C #3/A:41@N reasonable false
    33973 
    33974 Created 0 bonds 
    33975 
    33976 > bond #3/A:41@C #3/A:42@N reasonable false
    33977 
    33978 Created 0 bonds 
    33979 
    33980 > bond #3/A:42@C #3/A:43@N reasonable false
    33981 
    33982 Created 0 bonds 
    33983 
    33984 > bond #3/A:43@C #3/A:44@N reasonable false
    33985 
    33986 Created 0 bonds 
    33987 
    33988 > bond #3/A:44@C #3/A:45@N reasonable false
    33989 
    33990 Created 0 bonds 
    33991 
    33992 > bond #3/A:45@C #3/A:46@N reasonable false
    33993 
    33994 Created 1 bond 
    33995 
    33996 > bond #3/A:172@C #3/A:173@N reasonable false
    33997 
    33998 Created 0 bonds 
    33999 
    34000 > bond #3/A:173@C #3/A:174@N reasonable false
    34001 
    34002 Created 1 bond 
    34003 
    34004 > swapaa #3/A:5 LYS
    34005 
    34006 Using Dunbrack library 
    34007 mutadedModel #3/A PRO 5: phi none, psi 134.4 trans 
    34008 Applying LYS rotamer (chi angles: 64.2 -81.9 174.4 -65.5) to mutadedModel #3/A
    34009 LYS 5 
    34010 
    34011 > color #3/A:5 yellow
    34012 
    34013 > swapaa #3/A:6 ALA
    34014 
    34015 Using Dunbrack library 
    34016 Swapping mutadedModel #3/A CYS 6 to ALA 
    34017 
    34018 > color #3/A:6 yellow
    34019 
    34020 > swapaa #3/A:7 HIS
    34021 
    34022 Using Dunbrack library 
    34023 mutadedModel #3/A ILE 7: phi -80.8, psi 125.6 trans 
    34024 Applying HIS rotamer (chi angles: -65.9 -73.5) to mutadedModel #3/A HIS 7 
    34025 
    34026 > color #3/A:7 yellow
    34027 
    34028 > swapaa #3/A:8 PRO
    34029 
    34030 Using Dunbrack library 
    34031 mutadedModel #3/A GLY 8: phi -85.4, psi 152.4 trans 
    34032 Applying PRO rotamer (chi angles: 33.0 -35.1) to mutadedModel #3/A PRO 8 
    34033 
    34034 > color #3/A:8 yellow
    34035 
    34036 > swapaa #3/A:9 ILE
    34037 
    34038 Using Dunbrack library 
    34039 mutadedModel #3/A PRO 9: phi -60.6, psi 2.7 trans 
    34040 Applying ILE rotamer (chi angles: -64.5 169.3) to mutadedModel #3/A ILE 9 
    34041 
    34042 > color #3/A:9 yellow
    34043 
    34044 > swapaa #3/A:10 LYS
    34045 
    34046 Using Dunbrack library 
    34047 mutadedModel #3/A ALA 10: phi -123.4, psi 164.1 cis 
    34048 Applying LYS rotamer (chi angles: -58.7 -67.4 -174.2 -67.0) to mutadedModel
    34049 #3/A LYS 10 
    34050 
    34051 > color #3/A:10 yellow
    34052 
    34053 > swapaa #3/A:12 ASP
    34054 
    34055 Using Dunbrack library 
    34056 mutadedModel #3/A THR 12: phi -84.0, psi 111.3 trans 
    34057 Applying ASP rotamer (chi angles: -176.9 14.3) to mutadedModel #3/A ASP 12 
    34058 
    34059 > color #3/A:12 yellow
    34060 
    34061 > swapaa #3/A:13 TRP
    34062 
    34063 Using Dunbrack library 
    34064 mutadedModel #3/A ARG 13: phi -122.0, psi 147.7 trans 
    34065 Applying TRP rotamer (chi angles: -65.4 86.7) to mutadedModel #3/A TRP 13 
    34066 
    34067 > color #3/A:13 yellow
    34068 
    34069 > swapaa #3/A:17 HIS
    34070 
    34071 Using Dunbrack library 
    34072 mutadedModel #3/A PHE 17: phi -76.1, psi 127.0 trans 
    34073 Applying HIS rotamer (chi angles: -173.6 73.3) to mutadedModel #3/A HIS 17 
    34074 
    34075 > color #3/A:17 yellow
    34076 
    34077 > swapaa #3/A:20 ARG
    34078 
    34079 Using Dunbrack library 
    34080 mutadedModel #3/A GLU 20: phi -72.9, psi -38.2 trans 
    34081 Applying ARG rotamer (chi angles: 179.0 65.5 -178.0 85.8) to mutadedModel #3/A
    34082 ARG 20 
    34083 
    34084 > color #3/A:20 yellow
    34085 
    34086 > swapaa #3/A:21 LEU
    34087 
    34088 Using Dunbrack library 
    34089 mutadedModel #3/A ASN 21: phi -75.0, psi -14.0 trans 
    34090 Applying LEU rotamer (chi angles: -66.1 174.8) to mutadedModel #3/A LEU 21 
    34091 
    34092 > color #3/A:21 yellow
    34093 
    34094 > swapaa #3/A:22 GLU
    34095 
    34096 Using Dunbrack library 
    34097 mutadedModel #3/A GLY 22: phi 87.8, psi 26.9 trans 
    34098 Applying GLU rotamer (chi angles: -61.8 -177.1 -7.2) to mutadedModel #3/A GLU
    34099 22 
    34100 
    34101 > color #3/A:22 yellow
    34102 
    34103 > swapaa #3/A:23 ILE
    34104 
    34105 Using Dunbrack library 
    34106 mutadedModel #3/A THR 23: phi -99.5, psi -25.6 trans 
    34107 Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/A ILE 23 
    34108 
    34109 > color #3/A:23 yellow
    34110 
    34111 > swapaa #3/A:24 TRP
    34112 
    34113 Using Dunbrack library 
    34114 mutadedModel #3/A TYR 24: phi -112.4, psi -15.5 trans 
    34115 Applying TRP rotamer (chi angles: -65.9 -16.3) to mutadedModel #3/A TRP 24 
    34116 
    34117 > color #3/A:24 yellow
    34118 
    34119 > swapaa #3/A:25 HIS
    34120 
    34121 Using Dunbrack library 
    34122 mutadedModel #3/A ARG 25: phi -122.0, psi 168.0 trans 
    34123 Applying HIS rotamer (chi angles: -63.6 -76.8) to mutadedModel #3/A HIS 25 
    34124 
    34125 > color #3/A:25 yellow
    34126 
    34127 > swapaa #3/A:26 SER
    34128 
    34129 Using Dunbrack library 
    34130 mutadedModel #3/A ALA 26: phi -130.9, psi 177.1 trans 
    34131 Applying SER rotamer (chi angles: 67.4) to mutadedModel #3/A SER 26 
    34132 
    34133 > color #3/A:26 yellow
    34134 
    34135 > swapaa #3/A:32 VAL
    34136 
    34137 Using Dunbrack library 
    34138 mutadedModel #3/A LEU 32: phi -56.9, psi -36.9 trans 
    34139 Applying VAL rotamer (chi angles: 68.0) to mutadedModel #3/A VAL 32 
    34140 
    34141 > color #3/A:32 yellow
    34142 
    34143 > swapaa #3/A:36 ARG
    34144 
    34145 Using Dunbrack library 
    34146 mutadedModel #3/A TYR 36: phi -57.8, psi -3.8 trans 
    34147 Applying ARG rotamer (chi angles: -64.4 -65.8 -65.5 167.4) to mutadedModel
    34148 #3/A ARG 36 
    34149 
    34150 > color #3/A:36 yellow
    34151 
    34152 > swapaa #3/A:37 GLN
    34153 
    34154 Using Dunbrack library 
    34155 mutadedModel #3/A MET 37: phi -88.3, psi -36.9 trans 
    34156 Applying GLN rotamer (chi angles: -64.6 -62.0 6.2) to mutadedModel #3/A GLN 37 
    34157 
    34158 > color #3/A:37 yellow
    34159 
    34160 > swapaa #3/A:40 THR
    34161 
    34162 Using Dunbrack library 
    34163 mutadedModel #3/A VAL 40: phi -70.4, psi -31.8 trans 
    34164 Applying THR rotamer (chi angles: 59.6) to mutadedModel #3/A THR 40 
    34165 
    34166 > color #3/A:40 yellow
    34167 
    34168 > swapaa #3/A:42 VAL
    34169 
    34170 Using Dunbrack library 
    34171 mutadedModel #3/A ILE 42: phi -105.6, psi -41.7 trans 
    34172 Applying VAL rotamer (chi angles: 175.7) to mutadedModel #3/A VAL 42 
    34173 
    34174 > color #3/A:42 yellow
    34175 
    34176 > swapaa #3/A:43 PHE
    34177 
    34178 Using Dunbrack library 
    34179 mutadedModel #3/A ARG 43: phi -118.6, psi 8.9 trans 
    34180 Applying PHE rotamer (chi angles: -62.4 127.4) to mutadedModel #3/A PHE 43 
    34181 
    34182 > color #3/A:43 yellow
    34183 
    34184 > swapaa #3/A:44 ALA
    34185 
    34186 Using Dunbrack library 
    34187 Swapping mutadedModel #3/A GLY 44 to ALA 
    34188 
    34189 > color #3/A:44 yellow
    34190 
    34191 > swapaa #3/A:46 CYS
    34192 
    34193 Using Dunbrack library 
    34194 mutadedModel #3/A ASN 46: phi -58.1, psi 101.9 cis 
    34195 Applying CYS rotamer (chi angles: -179.0) to mutadedModel #3/A CYS 46 
    34196 
    34197 > color #3/A:46 yellow
    34198 
    34199 > swapaa #3/A:47 HIS
    34200 
    34201 Using Dunbrack library 
    34202 mutadedModel #3/A SER 47: phi -112.8, psi 118.4 trans 
    34203 Applying HIS rotamer (chi angles: -63.3 -80.7) to mutadedModel #3/A HIS 47 
    34204 
    34205 > color #3/A:47 yellow
    34206 
    34207 > swapaa #3/A:48 SER
    34208 
    34209 Using Dunbrack library 
    34210 mutadedModel #3/A CYS 48: phi -63.5, psi -172.8 cis 
    34211 Applying SER rotamer (chi angles: 67.5) to mutadedModel #3/A SER 48 
    34212 
    34213 > color #3/A:48 yellow
    34214 
    34215 > swapaa #3/A:49 LEU
    34216 
    34217 Using Dunbrack library 
    34218 mutadedModel #3/A GLY 49: phi -152.8, psi 51.2 trans 
    34219 Applying LEU rotamer (chi angles: -175.3 62.0) to mutadedModel #3/A LEU 49 
    34220 
    34221 > color #3/A:49 yellow
    34222 
    34223 > swapaa #3/A:51 ARG
    34224 
    34225 Using Dunbrack library 
    34226 mutadedModel #3/A PHE 51: phi -26.7, psi 50.3 trans 
    34227 Applying ARG rotamer (chi angles: -62.1 -75.1 75.2 78.5) to mutadedModel #3/A
    34228 ARG 51 
    34229 
    34230 > color #3/A:51 yellow
    34231 
    34232 > swapaa #3/A:52 MET
    34233 
    34234 Using Dunbrack library 
    34235 mutadedModel #3/A GLN 52: phi -97.1, psi 138.3 trans 
    34236 Applying MET rotamer (chi angles: -59.2 -61.8 -68.2) to mutadedModel #3/A MET
    34237 52 
    34238 
    34239 > color #3/A:52 yellow
    34240 
    34241 > swapaa #3/A:53 THR
    34242 
    34243 Using Dunbrack library 
    34244 mutadedModel #3/A ASP 53: phi -83.8, psi 169.4 trans 
    34245 Applying THR rotamer (chi angles: -168.8) to mutadedModel #3/A THR 53 
    34246 
    34247 > color #3/A:53 yellow
    34248 
    34249 > swapaa #3/A:55 THR
    34250 
    34251 Using Dunbrack library 
    34252 mutadedModel #3/A ASN 55: phi -72.6, psi -16.5 trans 
    34253 Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/A THR 55 
    34254 
    34255 > color #3/A:55 yellow
    34256 
    34257 > swapaa #3/A:56 HIS
    34258 
    34259 Using Dunbrack library 
    34260 mutadedModel #3/A GLN 56: phi -65.4, psi 0.1 trans 
    34261 Applying HIS rotamer (chi angles: -67.9 142.4) to mutadedModel #3/A HIS 56 
    34262 
    34263 > color #3/A:56 yellow
    34264 
    34265 > swapaa #3/A:58 GLN
    34266 
    34267 Using Dunbrack library 
    34268 mutadedModel #3/A LEU 58: phi -35.6, psi -84.1 trans 
    34269 Applying GLN rotamer (chi angles: -68.8 177.2 34.6) to mutadedModel #3/A GLN
    34270 58 
    34271 
    34272 > color #3/A:58 yellow
    34273 
    34274 > swapaa #3/A:60 PHE
    34275 
    34276 Using Dunbrack library 
    34277 mutadedModel #3/A ASN 60: phi -91.0, psi -22.0 trans 
    34278 Applying PHE rotamer (chi angles: 63.6 84.6) to mutadedModel #3/A PHE 60 
    34279 
    34280 > color #3/A:60 yellow
    34281 
    34282 > swapaa #3/A:61 MET
    34283 
    34284 Using Dunbrack library 
    34285 mutadedModel #3/A ARG 61: phi -117.0, psi 160.2 trans 
    34286 Applying MET rotamer (chi angles: 62.6 -177.8 -179.3) to mutadedModel #3/A MET
    34287 61 
    34288 
    34289 > color #3/A:61 yellow
    34290 
    34291 > swapaa #3/A:64 GLU
    34292 
    34293 Using Dunbrack library 
    34294 mutadedModel #3/A SER 64: phi -58.0, psi -42.3 trans 
    34295 Applying GLU rotamer (chi angles: -67.0 81.2 -0.7) to mutadedModel #3/A GLU 64 
    34296 
    34297 > color #3/A:64 yellow
    34298 
    34299 > swapaa #3/A:66 ILE
    34300 
    34301 Using Dunbrack library 
    34302 mutadedModel #3/A VAL 66: phi -65.6, psi -51.0 trans 
    34303 Applying ILE rotamer (chi angles: -66.5 168.5) to mutadedModel #3/A ILE 66 
    34304 
    34305 > color #3/A:66 yellow
    34306 
    34307 > swapaa #3/A:67 LYS
    34308 
    34309 Using Dunbrack library 
    34310 mutadedModel #3/A ARG 67: phi -63.2, psi -36.7 trans 
    34311 Applying LYS rotamer (chi angles: -70.5 179.2 -179.5 178.4) to mutadedModel
    34312 #3/A LYS 67 
    34313 
    34314 > color #3/A:67 yellow
    34315 
    34316 > swapaa #3/A:71 SER
    34317 
    34318 Using Dunbrack library 
    34319 mutadedModel #3/A ALA 71: phi -71.5, psi -20.0 trans 
    34320 Applying SER rotamer (chi angles: 68.0) to mutadedModel #3/A SER 71 
    34321 
    34322 > color #3/A:71 yellow
    34323 
    34324 > swapaa #3/A:74 GLU
    34325 
    34326 Using Dunbrack library 
    34327 mutadedModel #3/A VAL 74: phi -132.8, psi 106.6 trans 
    34328 Applying GLU rotamer (chi angles: -178.0 177.7 -1.8) to mutadedModel #3/A GLU
    34329 74 
    34330 
    34331 > color #3/A:74 yellow
    34332 
    34333 > swapaa #3/A:75 MET
    34334 
    34335 Using Dunbrack library 
    34336 mutadedModel #3/A LEU 75: phi -121.6, psi 150.2 trans 
    34337 Applying MET rotamer (chi angles: -63.7 -179.6 71.0) to mutadedModel #3/A MET
    34338 75 
    34339 
    34340 > color #3/A:75 yellow
    34341 
    34342 > swapaa #3/A:76 ILE
    34343 
    34344 Using Dunbrack library 
    34345 mutadedModel #3/A VAL 76: phi -31.7, psi 103.1 trans 
    34346 Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/A ILE 76 
    34347 
    34348 > color #3/A:76 yellow
    34349 
    34350 > swapaa #3/A:77 ASP
    34351 
    34352 Using Dunbrack library 
    34353 mutadedModel #3/A ALA 77: phi -77.4, psi 160.2 trans 
    34354 Applying ASP rotamer (chi angles: -166.3 87.4) to mutadedModel #3/A ASP 77 
    34355 
    34356 > color #3/A:77 yellow
    34357 
    34358 > swapaa #3/A:82 ALA
    34359 
    34360 Using Dunbrack library 
    34361 Swapping mutadedModel #3/A GLY 82 to ALA 
    34362 
    34363 > color #3/A:82 yellow
    34364 
    34365 > swapaa #3/A:83 GLU
    34366 
    34367 Using Dunbrack library 
    34368 mutadedModel #3/A THR 83: phi -94.5, psi 9.9 trans 
    34369 Applying GLU rotamer (chi angles: -176.8 177.3 -59.9) to mutadedModel #3/A GLU
    34370 83 
    34371 
    34372 > color #3/A:83 yellow
    34373 
    34374 > swapaa #3/A:88 ARG
    34375 
    34376 Using Dunbrack library 
    34377 mutadedModel #3/A PHE 88: phi -90.1, psi 133.7 trans 
    34378 Applying ARG rotamer (chi angles: -64.5 177.6 65.6 85.0) to mutadedModel #3/A
    34379 ARG 88 
    34380 
    34381 > color #3/A:88 yellow
    34382 
    34383 > swapaa #3/A:95 ASP
    34384 
    34385 Using Dunbrack library 
    34386 mutadedModel #3/A GLU 95: phi -114.2, psi 151.6 trans 
    34387 Applying ASP rotamer (chi angles: -65.9 -0.3) to mutadedModel #3/A ASP 95 
    34388 
    34389 > color #3/A:95 yellow
    34390 
    34391 > swapaa #3/A:99 THR
    34392 
    34393 Using Dunbrack library 
    34394 mutadedModel #3/A GLU 99: phi -84.3, psi 142.9 trans 
    34395 Applying THR rotamer (chi angles: -176.4) to mutadedModel #3/A THR 99 
    34396 
    34397 > color #3/A:99 yellow
    34398 
    34399 > swapaa #3/A:100 PRO
    34400 
    34401 Using Dunbrack library 
    34402 mutadedModel #3/A ALA 100: phi -90.7, psi -99.6 trans 
    34403 Applying PRO rotamer (chi angles: 27.2 -34.5) to mutadedModel #3/A PRO 100 
    34404 
    34405 > color #3/A:100 yellow
    34406 
    34407 > swapaa #3/A:101 TYR
    34408 
    34409 Using Dunbrack library 
    34410 mutadedModel #3/A PHE 101: phi -91.1, psi 132.1 trans 
    34411 Applying TYR rotamer (chi angles: -68.6 117.5) to mutadedModel #3/A TYR 101 
    34412 
    34413 > color #3/A:101 yellow
    34414 
    34415 > swapaa #3/A:104 GLN
    34416 
    34417 Using Dunbrack library 
    34418 mutadedModel #3/A LYS 104: phi -69.4, psi -36.1 trans 
    34419 Applying GLN rotamer (chi angles: -69.0 176.9 -81.9) to mutadedModel #3/A GLN
    34420 104 
    34421 
    34422 > color #3/A:104 yellow
    34423 
    34424 > swapaa #3/A:109 PHE
    34425 
    34426 Using Dunbrack library 
    34427 mutadedModel #3/A ARG 109: phi -75.2, psi -37.5 trans 
    34428 Applying PHE rotamer (chi angles: -176.2 74.7) to mutadedModel #3/A PHE 109 
    34429 
    34430 > color #3/A:109 yellow
    34431 
    34432 > swapaa #3/A:114 ALA
    34433 
    34434 Using Dunbrack library 
    34435 Swapping mutadedModel #3/A SER 114 to ALA 
    34436 
    34437 > color #3/A:114 yellow
    34438 
    34439 > swapaa #3/A:116 PRO
    34440 
    34441 Using Dunbrack library 
    34442 mutadedModel #3/A ALA 116: phi -57.3, psi 114.8 trans 
    34443 Applying PRO rotamer (chi angles: -25.2 36.8) to mutadedModel #3/A PRO 116 
    34444 
    34445 > color #3/A:116 yellow
    34446 
    34447 > swapaa #3/A:118 ASP
    34448 
    34449 Using Dunbrack library 
    34450 mutadedModel #3/A GLU 118: phi -60.2, psi 135.8 trans 
    34451 Applying ASP rotamer (chi angles: -173.1 84.4) to mutadedModel #3/A ASP 118 
    34452 
    34453 > color #3/A:118 yellow
    34454 
    34455 > swapaa #3/A:122 ALA
    34456 
    34457 Using Dunbrack library 
    34458 Swapping mutadedModel #3/A ASP 122 to ALA 
    34459 
    34460 > color #3/A:122 yellow
    34461 
    34462 > swapaa #3/A:124 PHE
    34463 
    34464 Using Dunbrack library 
    34465 mutadedModel #3/A ARG 124: phi -107.2, psi 15.3 trans 
    34466 Applying PHE rotamer (chi angles: -170.8 72.2) to mutadedModel #3/A PHE 124 
    34467 
    34468 > color #3/A:124 yellow
    34469 
    34470 > swapaa #3/A:126 LYS
    34471 
    34472 Using Dunbrack library 
    34473 mutadedModel #3/A PHE 126: phi -101.7, psi 135.4 trans 
    34474 Applying LYS rotamer (chi angles: -80.8 70.1 178.6 177.6) to mutadedModel #3/A
    34475 LYS 126 
    34476 
    34477 > color #3/A:126 yellow
    34478 
    34479 > swapaa #3/A:128 GLY
    34480 
    34481 Using Dunbrack library 
    34482 Swapping mutadedModel #3/A ALA 128 to GLY 
    34483 
    34484 > color #3/A:128 yellow
    34485 
    34486 > swapaa #3/A:130 SER
    34487 
    34488 Using Dunbrack library 
    34489 mutadedModel #3/A VAL 130: phi -78.0, psi -30.1 trans 
    34490 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/A SER 130 
    34491 
    34492 > color #3/A:130 yellow
    34493 
    34494 > swapaa #3/A:132 TYR
    34495 
    34496 Using Dunbrack library 
    34497 mutadedModel #3/A PHE 132: phi -67.8, psi -40.1 trans 
    34498 Applying TYR rotamer (chi angles: -71.7 49.7) to mutadedModel #3/A TYR 132 
    34499 
    34500 > color #3/A:132 yellow
    34501 
    34502 > swapaa #3/A:135 SER
    34503 
    34504 Using Dunbrack library 
    34505 mutadedModel #3/A ALA 135: phi -70.1, psi -29.6 trans 
    34506 Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/A SER 135 
    34507 
    34508 > color #3/A:135 yellow
    34509 
    34510 > swapaa #3/A:137 VAL
    34511 
    34512 Using Dunbrack library 
    34513 mutadedModel #3/A GLU 137: phi -76.7, psi -29.4 trans 
    34514 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/A VAL 137 
    34515 
    34516 > color #3/A:137 yellow
    34517 
    34518 > swapaa #3/A:140 TYR
    34519 
    34520 Using Dunbrack library 
    34521 mutadedModel #3/A ARG 140: phi -117.9, psi 4.5 trans 
    34522 Applying TYR rotamer (chi angles: -62.0 102.4) to mutadedModel #3/A TYR 140 
    34523 
    34524 > color #3/A:140 yellow
    34525 
    34526 > swapaa #3/A:141 ASN
    34527 
    34528 Using Dunbrack library 
    34529 mutadedModel #3/A THR 141: phi -72.0, psi 3.9 trans 
    34530 Applying ASN rotamer (chi angles: -71.6 62.9) to mutadedModel #3/A ASN 141 
    34531 
    34532 > color #3/A:141 yellow
    34533 
    34534 > swapaa #3/A:142 TRP
    34535 
    34536 Using Dunbrack library 
    34537 mutadedModel #3/A ALA 142: phi -83.5, psi -10.1 trans 
    34538 Applying TRP rotamer (chi angles: -68.2 -102.0) to mutadedModel #3/A TRP 142 
    34539 
    34540 > color #3/A:142 yellow
    34541 
    34542 > swapaa #3/A:144 ASN
    34543 
    34544 Using Dunbrack library 
    34545 mutadedModel #3/A THR 144: phi -70.9, psi -22.2 trans 
    34546 Applying ASN rotamer (chi angles: -72.5 -80.3) to mutadedModel #3/A ASN 144 
    34547 
    34548 > color #3/A:144 yellow
    34549 
    34550 > swapaa #3/A:148 MET
    34551 
    34552 Using Dunbrack library 
    34553 mutadedModel #3/A LEU 148: phi -137.5, psi 148.0 trans 
    34554 Applying MET rotamer (chi angles: -177.0 63.6 69.1) to mutadedModel #3/A MET
    34555 148 
    34556 
    34557 > color #3/A:148 yellow
    34558 
    34559 > swapaa #3/A:149 GLU
    34560 
    34561 Using Dunbrack library 
    34562 mutadedModel #3/A ALA 149: phi -66.0, psi 74.8 trans 
    34563 Applying GLU rotamer (chi angles: -65.5 82.2 0.3) to mutadedModel #3/A GLU 149 
    34564 
    34565 > color #3/A:149 yellow
    34566 
    34567 > swapaa #3/A:150 ILE
    34568 
    34569 Using Dunbrack library 
    34570 mutadedModel #3/A PRO 150: phi 71.1, psi none trans 
    34571 Applying ILE rotamer (chi angles: -63.8 170.1) to mutadedModel #3/A ILE 150 
    34572 
    34573 > color #3/A:150 yellow
    34574 
    34575 > swapaa #3/A:152 PRO
    34576 
    34577 Using Dunbrack library 
    34578 mutadedModel #3/A LEU 152: phi none, psi 105.1 trans 
    34579 Applying PRO rotamer (chi angles: 27.0 -34.6) to mutadedModel #3/A PRO 152 
    34580 
    34581 > color #3/A:152 yellow
    34582 
    34583 > swapaa #3/A:153 PHE
    34584 
    34585 Using Dunbrack library 
    34586 mutadedModel #3/A SER 153: phi -64.7, psi 146.8 trans 
    34587 Applying PHE rotamer (chi angles: 64.2 37.2) to mutadedModel #3/A PHE 153 
    34588 
    34589 > color #3/A:153 yellow
    34590 
    34591 > swapaa #3/A:154 ALA
    34592 
    34593 Using Dunbrack library 
    34594 Swapping mutadedModel #3/A PRO 154 to ALA 
    34595 
    34596 > color #3/A:154 yellow
    34597 
    34598 > swapaa #3/A:155 PRO
    34599 
    34600 Using Dunbrack library 
    34601 mutadedModel #3/A PHE 155: phi -102.5, psi 1.6 trans 
    34602 Applying PRO rotamer (chi angles: -22.6 34.7) to mutadedModel #3/A PRO 155 
    34603 
    34604 > color #3/A:155 yellow
    34605 
    34606 > swapaa #3/A:156 GLU
    34607 
    34608 Using Dunbrack library 
    34609 mutadedModel #3/A SER 156: phi -113.7, psi 137.4 trans 
    34610 Applying GLU rotamer (chi angles: 61.0 86.7 18.3) to mutadedModel #3/A GLU 156 
    34611 
    34612 > color #3/A:156 yellow
    34613 
    34614 > swapaa #3/A:157 VAL
    34615 
    34616 Using Dunbrack library 
    34617 mutadedModel #3/A PRO 157: phi -72.9, psi 161.8 trans 
    34618 Applying VAL rotamer (chi angles: -60.7) to mutadedModel #3/A VAL 157 
    34619 
    34620 > color #3/A:157 yellow
    34621 
    34622 > swapaa #3/A:158 LYS
    34623 
    34624 Using Dunbrack library 
    34625 mutadedModel #3/A ALA 158: phi -75.8, psi 127.9 trans 
    34626 Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel #3/A
    34627 LYS 158 
    34628 
    34629 > color #3/A:158 yellow
    34630 
    34631 > swapaa #3/A:159 PRO
    34632 
    34633 Using Dunbrack library 
    34634 mutadedModel #3/A VAL 159: phi -63.8, psi 120.2 trans 
    34635 Applying PRO rotamer (chi angles: -25.2 36.9) to mutadedModel #3/A PRO 159 
    34636 
    34637 > color #3/A:159 yellow
    34638 
    34639 > swapaa #3/A:160 GLY
    34640 
    34641 Using Dunbrack library 
    34642 Swapping mutadedModel #3/A PRO 160 to GLY 
    34643 
    34644 > color #3/A:160 yellow
    34645 
    34646 > swapaa #3/A:161 GLN
    34647 
    34648 Using Dunbrack library 
    34649 mutadedModel #3/A PRO 161: phi -55.0, psi 129.5 trans 
    34650 Applying GLN rotamer (chi angles: 66.6 -87.0 -83.6) to mutadedModel #3/A GLN
    34651 161 
    34652 
    34653 > color #3/A:161 yellow
    34654 
    34655 > swapaa #3/A:162 PHE
    34656 
    34657 Using Dunbrack library 
    34658 mutadedModel #3/A GLY 162: phi 122.5, psi 17.8 trans 
    34659 Applying PHE rotamer (chi angles: -67.0 122.3) to mutadedModel #3/A PHE 162 
    34660 
    34661 > color #3/A:162 yellow
    34662 
    34663 > swapaa #3/A:163 TRP
    34664 
    34665 Using Dunbrack library 
    34666 mutadedModel #3/A LYS 163: phi -126.2, psi 170.5 trans 
    34667 Applying TRP rotamer (chi angles: -62.9 61.6) to mutadedModel #3/A TRP 163 
    34668 
    34669 > color #3/A:163 yellow
    34670 
    34671 > swapaa #3/A:164 ASN
    34672 
    34673 Using Dunbrack library 
    34674 mutadedModel #3/A ARG 164: phi -157.1, psi 162.2 trans 
    34675 Applying ASN rotamer (chi angles: -160.6 -6.5) to mutadedModel #3/A ASN 164 
    34676 
    34677 > color #3/A:164 yellow
    34678 
    34679 > swapaa #3/A:165 PRO
    34680 
    34681 Using Dunbrack library 
    34682 mutadedModel #3/A TRP 165: phi -111.5, psi 68.1 trans 
    34683 Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/A PRO 165 
    34684 
    34685 > color #3/A:165 yellow
    34686 
    34687 > swapaa #3/A:166 TYR
    34688 
    34689 Using Dunbrack library 
    34690 mutadedModel #3/A ASN 166: phi -73.0, psi 110.2 trans 
    34691 Applying TYR rotamer (chi angles: -177.4 74.2) to mutadedModel #3/A TYR 166 
    34692 
    34693 > color #3/A:166 yellow
    34694 
    34695 > swapaa #3/A:167 PHE
    34696 
    34697 Using Dunbrack library 
    34698 mutadedModel #3/A PRO 167: phi -58.2, psi -10.9 trans 
    34699 Applying PHE rotamer (chi angles: -72.4 12.4) to mutadedModel #3/A PHE 167 
    34700 
    34701 > color #3/A:167 yellow
    34702 
    34703 > swapaa #3/A:168 LYS
    34704 
    34705 Using Dunbrack library 
    34706 mutadedModel #3/A ARG 168: phi -113.9, psi 21.5 trans 
    34707 Applying LYS rotamer (chi angles: -163.8 -88.4 117.5 177.3) to mutadedModel
    34708 #3/A LYS 168 
    34709 
    34710 > color #3/A:168 yellow
    34711 
    34712 > swapaa #3/A:170 CYS
    34713 
    34714 Using Dunbrack library 
    34715 mutadedModel #3/A PRO 170: phi -179.8, psi 101.7 trans 
    34716 Applying CYS rotamer (chi angles: -177.1) to mutadedModel #3/A CYS 170 
    34717 
    34718 > color #3/A:170 yellow
    34719 
    34720 > swapaa #3/A:171 VAL
    34721 
    34722 Using Dunbrack library 
    34723 mutadedModel #3/A GLY 171: phi 51.8, psi -37.0 trans 
    34724 Applying VAL rotamer (chi angles: 175.7) to mutadedModel #3/A VAL 171 
    34725 
    34726 > color #3/A:171 yellow
    34727 
    34728 > swapaa #3/A:172 LEU
    34729 
    34730 Using Dunbrack library 
    34731 mutadedModel #3/A THR 172: phi -145.0, psi 142.8 cis 
    34732 Applying LEU rotamer (chi angles: 69.6 163.1) to mutadedModel #3/A LEU 172 
    34733 
    34734 > color #3/A:172 yellow
    34735 
    34736 > swapaa #3/A:173 SER
    34737 
    34738 Using Dunbrack library 
    34739 mutadedModel #3/A THR 173: phi -99.2, psi -7.7 trans 
    34740 Applying SER rotamer (chi angles: -179.8) to mutadedModel #3/A SER 173 
    34741 
    34742 > color #3/A:173 yellow
    34743 
    34744 > swapaa #3/A:174 MET
    34745 
    34746 Using Dunbrack library 
    34747 mutadedModel #3/A CYS 174: phi 149.4, psi -72.4 trans 
    34748 Applying MET rotamer (chi angles: -177.8 -82.0 -72.5) to mutadedModel #3/A MET
    34749 174 
    34750 
    34751 > color #3/A:174 yellow
    34752 
    34753 > swapaa #3/A:177 PRO
    34754 
    34755 Using Dunbrack library 
    34756 mutadedModel #3/A VAL 177: phi -106.0, psi -56.1 trans 
    34757 Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/A PRO 177 
    34758 
    34759 > color #3/A:177 yellow
    34760 
    34761 > swapaa #3/A:180 ASP
    34762 
    34763 Using Dunbrack library 
    34764 mutadedModel #3/A ALA 180: phi -55.1, psi 112.6 trans 
    34765 Applying ASP rotamer (chi angles: -175.5 -40.1) to mutadedModel #3/A ASP 180 
    34766 
    34767 > color #3/A:180 yellow
    34768 
    34769 > swapaa #3/A:182 LEU
    34770 
    34771 Using Dunbrack library 
    34772 mutadedModel #3/A ASN 182: phi -79.0, psi -21.4 trans 
    34773 Applying LEU rotamer (chi angles: -172.7 59.3) to mutadedModel #3/A LEU 182 
    34774 
    34775 > color #3/A:182 yellow
    34776 
    34777 > swapaa #3/A:183 VAL
    34778 
    34779 Using Dunbrack library 
    34780 mutadedModel #3/A ILE 183: phi -107.4, psi 136.9 trans 
    34781 Applying VAL rotamer (chi angles: 176.9) to mutadedModel #3/A VAL 183 
    34782 
    34783 > color #3/A:183 yellow
    34784 
    34785 > swapaa #3/A:184 ASP
    34786 
    34787 Using Dunbrack library 
    34788 mutadedModel #3/A GLU 184: phi -102.4, psi 115.2 trans 
    34789 Applying ASP rotamer (chi angles: 62.4 -50.2) to mutadedModel #3/A ASP 184 
    34790 
    34791 > color #3/A:184 yellow
    34792 
    34793 > swapaa #3/A:185 TYR
    34794 
    34795 Using Dunbrack library 
    34796 mutadedModel #3/A PHE 185: phi -74.7, psi 159.8 trans 
    34797 Applying TYR rotamer (chi angles: -69.8 99.8) to mutadedModel #3/A TYR 185 
    34798 
    34799 > color #3/A:185 yellow
    34800 
    34801 > swapaa #3/A:186 GLU
    34802 
    34803 Using Dunbrack library 
    34804 mutadedModel #3/A VAL 186: phi -79.5, psi -34.7 trans 
    34805 Applying GLU rotamer (chi angles: 66.4 -84.0 -9.3) to mutadedModel #3/A GLU
    34806 186 
    34807 
    34808 > color #3/A:186 yellow
    34809 
    34810 > swapaa #3/A:187 ASP
    34811 
    34812 Using Dunbrack library 
    34813 mutadedModel #3/A ARG 187: phi -96.5, psi 0.7 trans 
    34814 Applying ASP rotamer (chi angles: 63.1 -3.7) to mutadedModel #3/A ASP 187 
    34815 
    34816 > color #3/A:187 yellow
    34817 
    34818 > swapaa #3/A:189 THR
    34819 
    34820 Using Dunbrack library 
    34821 mutadedModel #3/A ARG 189: phi -93.2, psi 138.5 trans 
    34822 Applying THR rotamer (chi angles: -178.3) to mutadedModel #3/A THR 189 
    34823 
    34824 > color #3/A:189 yellow
    34825 
    34826 > swapaa #3/A:191 ALA
    34827 
    34828 Using Dunbrack library 
    34829 Swapping mutadedModel #3/A GLY 191 to ALA 
    34830 
    34831 > color #3/A:191 yellow
    34832 
    34833 > swapaa #3/A:193 ILE
    34834 
    34835 Using Dunbrack library 
    34836 mutadedModel #3/A LEU 193: phi -78.7, psi -47.8 trans 
    34837 Applying ILE rotamer (chi angles: -65.5 168.9) to mutadedModel #3/A ILE 193 
    34838 
    34839 > color #3/A:193 yellow
    34840 
    34841 > swapaa #3/A:195 GLN
    34842 
    34843 Using Dunbrack library 
    34844 mutadedModel #3/A LEU 195: phi -61.1, psi -45.8 trans 
    34845 Applying GLN rotamer (chi angles: -176.6 67.3 73.9) to mutadedModel #3/A GLN
    34846 195 
    34847 
    34848 > color #3/A:195 yellow
    34849 
    34850 > swapaa #3/A:198 LYS
    34851 
    34852 Using Dunbrack library 
    34853 mutadedModel #3/A GLY 198: phi -56.9, psi -38.2 trans 
    34854 Applying LYS rotamer (chi angles: 179.8 -96.2 -71.1 178.0) to mutadedModel
    34855 #3/A LYS 198 
    34856 
    34857 > color #3/A:198 yellow
    34858 
    34859 > swapaa #3/A:199 ASP
    34860 
    34861 Using Dunbrack library 
    34862 mutadedModel #3/A ASN 199: phi -71.2, psi -28.1 trans 
    34863 Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/A ASP 199 
    34864 
    34865 > color #3/A:199 yellow
    34866 
    34867 > swapaa #3/A:202 ASN
    34868 
    34869 Using Dunbrack library 
    34870 mutadedModel #3/A LEU 202: phi -56.5, psi -36.7 trans 
    34871 Applying ASN rotamer (chi angles: -173.9 56.5) to mutadedModel #3/A ASN 202 
    34872 
    34873 > color #3/A:202 yellow
    34874 
    34875 > swapaa #3/A:205 ARG
    34876 
    34877 Using Dunbrack library 
    34878 mutadedModel #3/A TYR 205: phi -63.6, psi -48.3 trans 
    34879 Applying ARG rotamer (chi angles: 178.0 67.1 -178.4 -87.8) to mutadedModel
    34880 #3/A ARG 205 
    34881 
    34882 > color #3/A:205 yellow
    34883 
    34884 > swapaa #3/A:208 ALA
    34885 
    34886 Using Dunbrack library 
    34887 Swapping mutadedModel #3/A ASP 208 to ALA 
    34888 
    34889 > color #3/A:208 yellow
    34890 
    34891 > swapaa #3/A:209 GLU
    34892 
    34893 Using Dunbrack library 
    34894 mutadedModel #3/A ASP 209: phi -136.3, psi 65.9 trans 
    34895 Applying GLU rotamer (chi angles: -63.1 -179.9 25.1) to mutadedModel #3/A GLU
    34896 209 
    34897 
    34898 > color #3/A:209 yellow
    34899 
    34900 > swapaa #3/A:210 SER
    34901 
    34902 Using Dunbrack library 
    34903 mutadedModel #3/A PRO 210: phi -62.7, psi -19.9 trans 
    34904 Applying SER rotamer (chi angles: 67.0) to mutadedModel #3/A SER 210 
    34905 
    34906 > color #3/A:210 yellow
    34907 
    34908 > swapaa #3/A:211 GLU
    34909 
    34910 Using Dunbrack library 
    34911 mutadedModel #3/A ASP 211: phi -88.7, psi 6.0 trans 
    34912 Applying GLU rotamer (chi angles: -65.2 77.1 16.4) to mutadedModel #3/A GLU
    34913 211 
    34914 
    34915 > color #3/A:211 yellow
    34916 
    34917 > swapaa #3/A:212 TYR
    34918 
    34919 Using Dunbrack library 
    34920 mutadedModel #3/A PHE 212: phi -69.2, psi -22.1 trans 
    34921 Applying TYR rotamer (chi angles: -170.7 100.0) to mutadedModel #3/A TYR 212 
    34922 
    34923 > color #3/A:212 yellow
    34924 
    34925 > swapaa #3/A:213 ASP
    34926 
    34927 Using Dunbrack library 
    34928 mutadedModel #3/A GLU 213: phi -90.3, psi -25.0 trans 
    34929 Applying ASP rotamer (chi angles: -65.3 -5.8) to mutadedModel #3/A ASP 213 
    34930 
    34931 > color #3/A:213 yellow
    34932 
    34933 > swapaa #3/A:214 ASP
    34934 
    34935 Using Dunbrack library 
    34936 mutadedModel #3/A ALA 214: phi -68.2, psi -39.9 trans 
    34937 Applying ASP rotamer (chi angles: -172.4 36.0) to mutadedModel #3/A ASP 214 
    34938 
    34939 > color #3/A:214 yellow
    34940 
    34941 > swapaa #3/A:216 ARG
    34942 
    34943 Using Dunbrack library 
    34944 mutadedModel #3/A HIS 216: phi -72.3, psi -22.0 trans 
    34945 Applying ARG rotamer (chi angles: -64.8 -67.2 -176.1 -92.8) to mutadedModel
    34946 #3/A ARG 216 
    34947 
    34948 > color #3/A:216 yellow
    34949 
    34950 > swapaa #3/A:221 LYS
    34951 
    34952 Using Dunbrack library 
    34953 mutadedModel #3/A ARG 221: phi -75.5, psi -42.0 trans 
    34954 Applying LYS rotamer (chi angles: -178.8 -96.1 -71.1 178.0) to mutadedModel
    34955 #3/A LYS 221 
    34956 
    34957 > color #3/A:221 yellow
    34958 
    34959 > swapaa #3/A:222 VAL
    34960 
    34961 Using Dunbrack library 
    34962 mutadedModel #3/A GLU 222: phi -75.7, psi -31.2 trans 
    34963 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/A VAL 222 
    34964 
    34965 > color #3/A:222 yellow
    34966 
    34967 > swapaa #3/A:223 ILE
    34968 
    34969 Using Dunbrack library 
    34970 mutadedModel #3/A ASN 223: phi -76.2, psi -26.9 trans 
    34971 Applying ILE rotamer (chi angles: -164.9 64.5) to mutadedModel #3/A ILE 223 
    34972 
    34973 > color #3/A:223 yellow
    34974 
    34975 > swapaa #3/A:226 VAL
    34976 
    34977 Using Dunbrack library 
    34978 mutadedModel #3/A CYS 226: phi -65.4, psi -49.8 trans 
    34979 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/A VAL 226 
    34980 
    34981 > color #3/A:226 yellow
    34982 
    34983 > swapaa #3/A:228 LEU
    34984 
    34985 Using Dunbrack library 
    34986 mutadedModel #3/A ASN 228: phi -67.9, psi -39.3 trans 
    34987 Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/A LEU 228 
    34988 
    34989 > color #3/A:228 yellow
    34990 
    34991 > swapaa #3/A:230 ASN
    34992 
    34993 Using Dunbrack library 
    34994 mutadedModel #3/A ILE 230: phi -73.2, psi -33.8 trans 
    34995 Applying ASN rotamer (chi angles: -73.1 1.3) to mutadedModel #3/A ASN 230 
    34996 
    34997 > color #3/A:230 yellow
    34998 
    34999 > swapaa #3/A:231 CYS
    35000 
    35001 Using Dunbrack library 
    35002 mutadedModel #3/A GLU 231: phi -72.5, psi -37.0 trans 
    35003 Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/A CYS 231 
    35004 
    35005 > color #3/A:231 yellow
    35006 
    35007 > swapaa #3/A:234 LEU
    35008 
    35009 Using Dunbrack library 
    35010 mutadedModel #3/A THR 234: phi -64.7, psi -37.2 trans 
    35011 Applying LEU rotamer (chi angles: -178.6 60.2) to mutadedModel #3/A LEU 234 
    35012 
    35013 > color #3/A:234 yellow
    35014 
    35015 > swapaa #3/A:235 HIS
    35016 
    35017 Using Dunbrack library 
    35018 mutadedModel #3/A PHE 235: phi -81.0, psi -42.7 trans 
    35019 Applying HIS rotamer (chi angles: -69.4 82.0) to mutadedModel #3/A HIS 235 
    35020 
    35021 > color #3/A:235 yellow
    35022 
    35023 > swapaa #3/A:236 TYR
    35024 
    35025 Using Dunbrack library 
    35026 mutadedModel #3/A PHE 236: phi -66.1, psi -33.6 trans 
    35027 Applying TYR rotamer (chi angles: -171.9 50.3) to mutadedModel #3/A TYR 236 
    35028 
    35029 > color #3/A:236 yellow
    35030 
    35031 > swapaa #3/A:237 GLY
    35032 
    35033 Using Dunbrack library 
    35034 Swapping mutadedModel #3/A ALA 237 to GLY 
    35035 
    35036 > color #3/A:237 yellow
    35037 
    35038 > swapaa #3/A:238 GLN
    35039 
    35040 Using Dunbrack library 
    35041 mutadedModel #3/A MET 238: phi -69.9, psi -38.8 trans 
    35042 Applying GLN rotamer (chi angles: -175.0 62.7 77.1) to mutadedModel #3/A GLN
    35043 238 
    35044 
    35045 > color #3/A:238 yellow
    35046 
    35047 > swapaa #3/A:239 LYS
    35048 
    35049 Using Dunbrack library 
    35050 mutadedModel #3/A GLN 239: phi -67.1, psi -43.0 trans 
    35051 Applying LYS rotamer (chi angles: -68.1 -170.4 -73.7 -66.9) to mutadedModel
    35052 #3/A LYS 239 
    35053 
    35054 > color #3/A:239 yellow
    35055 
    35056 > swapaa #3/A:240 ASN
    35057 
    35058 Using Dunbrack library 
    35059 mutadedModel #3/A ILE 240: phi -85.2, psi -6.8 trans 
    35060 Applying ASN rotamer (chi angles: -165.5 46.6) to mutadedModel #3/A ASN 240 
    35061 
    35062 > color #3/A:240 yellow
    35063 
    35064 > swapaa #3/A:243 TRP
    35065 
    35066 Using Dunbrack library 
    35067 mutadedModel #3/A ASN 243: phi -58.7, psi -38.6 trans 
    35068 Applying TRP rotamer (chi angles: 68.0 -92.0) to mutadedModel #3/A TRP 243 
    35069 
    35070 > color #3/A:243 yellow
    35071 
    35072 > swapaa #3/A:245 ILE
    35073 
    35074 Using Dunbrack library 
    35075 mutadedModel #3/A LEU 245: phi -77.3, psi -40.6 trans 
    35076 Applying ILE rotamer (chi angles: -80.2 54.9) to mutadedModel #3/A ILE 245 
    35077 
    35078 > color #3/A:245 yellow
    35079 
    35080 > swapaa #3/A:246 TYR
    35081 
    35082 Using Dunbrack library 
    35083 mutadedModel #3/A PHE 246: phi -82.9, psi -10.3 trans 
    35084 Applying TYR rotamer (chi angles: -68.6 103.8) to mutadedModel #3/A TYR 246 
    35085 
    35086 > color #3/A:246 yellow
    35087 
    35088 > swapaa #3/A:248 ARG
    35089 
    35090 Using Dunbrack library 
    35091 mutadedModel #3/A TYR 248: phi -149.0, psi 116.2 trans 
    35092 Applying ARG rotamer (chi angles: -75.6 84.8 68.3 -167.6) to mutadedModel #3/A
    35093 ARG 248 
    35094 
    35095 > color #3/A:248 yellow
    35096 
    35097 > swapaa #3/A:249 THR
    35098 
    35099 Using Dunbrack library 
    35100 mutadedModel #3/A MET 249: phi -118.7, psi 107.7 trans 
    35101 Applying THR rotamer (chi angles: -59.4) to mutadedModel #3/A THR 249 
    35102 
    35103 > color #3/A:249 yellow
    35104 
    35105 > swapaa #3/A:251 PHE
    35106 
    35107 Using Dunbrack library 
    35108 mutadedModel #3/A TRP 251: phi -100.5, psi 137.1 trans 
    35109 Applying PHE rotamer (chi angles: -67.8 91.4) to mutadedModel #3/A PHE 251 
    35110 
    35111 > color #3/A:251 yellow
    35112 
    35113 > swapaa #3/A:255 LYS
    35114 
    35115 Using Dunbrack library 
    35116 mutadedModel #3/A THR 255: phi -119.6, psi -20.3 cis 
    35117 Applying LYS rotamer (chi angles: 67.7 -178.4 -179.2 -179.0) to mutadedModel
    35118 #3/A LYS 255 
    35119 
    35120 > color #3/A:255 yellow
    35121 
    35122 > swapaa #3/A:256 LYS
    35123 
    35124 Using Dunbrack library 
    35125 mutadedModel #3/A ASP 256: phi 2.7, psi 75.1 cis 
    35126 Applying LYS rotamer (chi angles: -61.4 -65.7 -70.5 -68.2) to mutadedModel
    35127 #3/A LYS 256 
    35128 
    35129 > color #3/A:256 yellow
    35130 
    35131 > swapaa #3/A:257 VAL
    35132 
    35133 Using Dunbrack library 
    35134 mutadedModel #3/A THR 257: phi -106.3, psi 80.0 trans 
    35135 Applying VAL rotamer (chi angles: -179.5) to mutadedModel #3/A VAL 257 
    35136 
    35137 > color #3/A:257 yellow
    35138 
    35139 > swapaa #3/A:258 TRP
    35140 
    35141 Using Dunbrack library 
    35142 mutadedModel #3/A GLY 258: phi 42.6, psi 62.8 trans 
    35143 Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/A TRP 258 
    35144 
    35145 > color #3/A:258 yellow
    35146 
    35147 > color #3/A:259 cyan
    35148 
    35149 > select #3/N
    35150 
    35151 911 atoms, 936 bonds, 114 residues, 1 model selected 
    35152 
    35153 > bond #3/N:34@C #3/N:35@N reasonable false
    35154 
    35155 Created 0 bonds 
    35156 
    35157 > bond #3/N:35@C #3/N:36@N reasonable false
    35158 
    35159 Created 0 bonds 
    35160 
    35161 > bond #3/N:36@C #3/N:37@N reasonable false
    35162 
    35163 Created 0 bonds 
    35164 
    35165 > bond #3/N:37@C #3/N:38@N reasonable false
    35166 
    35167 Created 0 bonds 
    35168 
    35169 > bond #3/N:38@C #3/N:39@N reasonable false
    35170 
    35171 Created 0 bonds 
    35172 
    35173 > bond #3/N:39@C #3/N:40@N reasonable false
    35174 
    35175 Created 0 bonds 
    35176 
    35177 > bond #3/N:40@C #3/N:41@N reasonable false
    35178 
    35179 Created 0 bonds 
    35180 
    35181 > bond #3/N:41@C #3/N:42@N reasonable false
    35182 
    35183 Created 1 bond 
    35184 
    35185 > bond #3/N:47@C #3/N:48@N reasonable false
    35186 
    35187 Created 0 bonds 
    35188 
    35189 > bond #3/N:48@C #3/N:49@N reasonable false
    35190 
    35191 Created 0 bonds 
    35192 
    35193 > bond #3/N:49@C #3/N:50@N reasonable false
    35194 
    35195 Created 0 bonds 
    35196 
    35197 > bond #3/N:50@C #3/N:51@N reasonable false
    35198 
    35199 Created 0 bonds 
    35200 
    35201 > bond #3/N:51@C #3/N:52@N reasonable false
    35202 
    35203 Created 0 bonds 
    35204 
    35205 > bond #3/N:52@C #3/N:53@N reasonable false
    35206 
    35207 Created 0 bonds 
    35208 
    35209 > bond #3/N:53@C #3/N:54@N reasonable false
    35210 
    35211 Created 0 bonds 
    35212 
    35213 > bond #3/N:54@C #3/N:55@N reasonable false
    35214 
    35215 Created 0 bonds 
    35216 
    35217 > bond #3/N:55@C #3/N:56@N reasonable false
    35218 
    35219 Created 0 bonds 
    35220 
    35221 > bond #3/N:56@C #3/N:57@N reasonable false
    35222 
    35223 Created 0 bonds 
    35224 
    35225 > bond #3/N:57@C #3/N:58@N reasonable false
    35226 
    35227 Created 0 bonds 
    35228 
    35229 > bond #3/N:58@C #3/N:59@N reasonable false
    35230 
    35231 Created 0 bonds 
    35232 
    35233 > bond #3/N:59@C #3/N:60@N reasonable false
    35234 
    35235 Created 0 bonds 
    35236 
    35237 > bond #3/N:60@C #3/N:61@N reasonable false
    35238 
    35239 Created 0 bonds 
    35240 
    35241 > bond #3/N:61@C #3/N:62@N reasonable false
    35242 
    35243 Created 0 bonds 
    35244 
    35245 > bond #3/N:62@C #3/N:63@N reasonable false
    35246 
    35247 Created 0 bonds 
    35248 
    35249 > bond #3/N:63@C #3/N:64@N reasonable false
    35250 
    35251 Created 0 bonds 
    35252 
    35253 > bond #3/N:64@C #3/N:65@N reasonable false
    35254 
    35255 Created 0 bonds 
    35256 
    35257 > bond #3/N:65@C #3/N:66@N reasonable false
    35258 
    35259 Created 0 bonds 
    35260 
    35261 > bond #3/N:66@C #3/N:67@N reasonable false
    35262 
    35263 Created 0 bonds 
    35264 
    35265 > bond #3/N:67@C #3/N:68@N reasonable false
    35266 
    35267 Created 0 bonds 
    35268 
    35269 > bond #3/N:68@C #3/N:69@N reasonable false
    35270 
    35271 Created 0 bonds 
    35272 
    35273 > bond #3/N:69@C #3/N:70@N reasonable false
    35274 
    35275 Created 0 bonds 
    35276 
    35277 > bond #3/N:70@C #3/N:71@N reasonable false
    35278 
    35279 Created 0 bonds 
    35280 
    35281 > bond #3/N:71@C #3/N:72@N reasonable false
    35282 
    35283 Created 0 bonds 
    35284 
    35285 > bond #3/N:72@C #3/N:73@N reasonable false
    35286 
    35287 Created 0 bonds 
    35288 
    35289 > bond #3/N:73@C #3/N:74@N reasonable false
    35290 
    35291 Created 0 bonds 
    35292 
    35293 > bond #3/N:74@C #3/N:75@N reasonable false
    35294 
    35295 Created 0 bonds 
    35296 
    35297 > bond #3/N:75@C #3/N:76@N reasonable false
    35298 
    35299 Created 0 bonds 
    35300 
    35301 > bond #3/N:76@C #3/N:77@N reasonable false
    35302 
    35303 Created 0 bonds 
    35304 
    35305 > bond #3/N:77@C #3/N:78@N reasonable false
    35306 
    35307 Created 0 bonds 
    35308 
    35309 > bond #3/N:78@C #3/N:79@N reasonable false
    35310 
    35311 Created 0 bonds 
    35312 
    35313 > bond #3/N:79@C #3/N:80@N reasonable false
    35314 
    35315 Created 0 bonds 
    35316 
    35317 > bond #3/N:80@C #3/N:81@N reasonable false
    35318 
    35319 Created 0 bonds 
    35320 
    35321 > bond #3/N:81@C #3/N:82@N reasonable false
    35322 
    35323 Created 0 bonds 
    35324 
    35325 > bond #3/N:82@C #3/N:83@N reasonable false
    35326 
    35327 Created 0 bonds 
    35328 
    35329 > bond #3/N:83@C #3/N:84@N reasonable false
    35330 
    35331 Created 0 bonds 
    35332 
    35333 > bond #3/N:84@C #3/N:85@N reasonable false
    35334 
    35335 Created 0 bonds 
    35336 
    35337 > bond #3/N:85@C #3/N:86@N reasonable false
    35338 
    35339 Created 0 bonds 
    35340 
    35341 > bond #3/N:86@C #3/N:87@N reasonable false
    35342 
    35343 Created 0 bonds 
    35344 
    35345 > bond #3/N:87@C #3/N:88@N reasonable false
    35346 
    35347 Created 0 bonds 
    35348 
    35349 > bond #3/N:88@C #3/N:89@N reasonable false
    35350 
    35351 Created 0 bonds 
    35352 
    35353 > bond #3/N:89@C #3/N:90@N reasonable false
    35354 
    35355 Created 0 bonds 
    35356 
    35357 > bond #3/N:90@C #3/N:91@N reasonable false
    35358 
    35359 Created 0 bonds 
    35360 
    35361 > bond #3/N:91@C #3/N:92@N reasonable false
    35362 
    35363 Created 0 bonds 
    35364 
    35365 > bond #3/N:92@C #3/N:93@N reasonable false
    35366 
    35367 Created 0 bonds 
    35368 
    35369 > bond #3/N:93@C #3/N:94@N reasonable false
    35370 
    35371 Created 0 bonds 
    35372 
    35373 > bond #3/N:94@C #3/N:95@N reasonable false
    35374 
    35375 Created 0 bonds 
    35376 
    35377 > bond #3/N:95@C #3/N:96@N reasonable false
    35378 
    35379 Created 0 bonds 
    35380 
    35381 > bond #3/N:96@C #3/N:97@N reasonable false
    35382 
    35383 Created 0 bonds 
    35384 
    35385 > bond #3/N:97@C #3/N:98@N reasonable false
    35386 
    35387 Created 0 bonds 
    35388 
    35389 > bond #3/N:98@C #3/N:99@N reasonable false
    35390 
    35391 Created 0 bonds 
    35392 
    35393 > bond #3/N:99@C #3/N:100@N reasonable false
    35394 
    35395 Created 0 bonds 
    35396 
    35397 > bond #3/N:100@C #3/N:101@N reasonable false
    35398 
    35399 Created 0 bonds 
    35400 
    35401 > bond #3/N:101@C #3/N:102@N reasonable false
    35402 
    35403 Created 0 bonds 
    35404 
    35405 > bond #3/N:102@C #3/N:103@N reasonable false
    35406 
    35407 Created 0 bonds 
    35408 
    35409 > bond #3/N:103@C #3/N:104@N reasonable false
    35410 
    35411 Created 0 bonds 
    35412 
    35413 > bond #3/N:104@C #3/N:105@N reasonable false
    35414 
    35415 Created 0 bonds 
    35416 
    35417 > bond #3/N:105@C #3/N:106@N reasonable false
    35418 
    35419 Created 0 bonds 
    35420 
    35421 > bond #3/N:106@C #3/N:107@N reasonable false
    35422 
    35423 Created 0 bonds 
    35424 
    35425 > bond #3/N:107@C #3/N:108@N reasonable false
    35426 
    35427 Created 0 bonds 
    35428 
    35429 > bond #3/N:108@C #3/N:109@N reasonable false
    35430 
    35431 Created 0 bonds 
    35432 
    35433 > bond #3/N:109@C #3/N:110@N reasonable false
    35434 
    35435 Created 0 bonds 
    35436 
    35437 > bond #3/N:110@C #3/N:111@N reasonable false
    35438 
    35439 Created 0 bonds 
    35440 
    35441 > bond #3/N:111@C #3/N:112@N reasonable false
    35442 
    35443 Created 0 bonds 
    35444 
    35445 > bond #3/N:112@C #3/N:113@N reasonable false
    35446 
    35447 Created 0 bonds 
    35448 
    35449 > bond #3/N:113@C #3/N:114@N reasonable false
    35450 
    35451 Created 0 bonds 
    35452 
    35453 > bond #3/N:114@C #3/N:115@N reasonable false
    35454 
    35455 Created 0 bonds 
    35456 
    35457 > bond #3/N:115@C #3/N:116@N reasonable false
    35458 
    35459 Created 0 bonds 
    35460 
    35461 > bond #3/N:116@C #3/N:117@N reasonable false
    35462 
    35463 Created 0 bonds 
    35464 
    35465 > bond #3/N:117@C #3/N:118@N reasonable false
    35466 
    35467 Created 0 bonds 
    35468 
    35469 > bond #3/N:118@C #3/N:119@N reasonable false
    35470 
    35471 Created 0 bonds 
    35472 
    35473 > bond #3/N:119@C #3/N:120@N reasonable false
    35474 
    35475 Created 0 bonds 
    35476 
    35477 > bond #3/N:120@C #3/N:121@N reasonable false
    35478 
    35479 Created 0 bonds 
    35480 
    35481 > bond #3/N:121@C #3/N:122@N reasonable false
    35482 
    35483 Created 0 bonds 
    35484 
    35485 > bond #3/N:122@C #3/N:123@N reasonable false
    35486 
    35487 Created 0 bonds 
    35488 
    35489 > bond #3/N:123@C #3/N:124@N reasonable false
    35490 
    35491 Created 0 bonds 
    35492 
    35493 > bond #3/N:124@C #3/N:125@N reasonable false
    35494 
    35495 Created 0 bonds 
    35496 
    35497 > bond #3/N:125@C #3/N:126@N reasonable false
    35498 
    35499 Created 0 bonds 
    35500 
    35501 > bond #3/N:126@C #3/N:127@N reasonable false
    35502 
    35503 Created 0 bonds 
    35504 
    35505 > bond #3/N:127@C #3/N:128@N reasonable false
    35506 
    35507 Created 0 bonds 
    35508 
    35509 > bond #3/N:128@C #3/N:129@N reasonable false
    35510 
    35511 Created 0 bonds 
    35512 
    35513 > bond #3/N:129@C #3/N:130@N reasonable false
    35514 
    35515 Created 0 bonds 
    35516 
    35517 > bond #3/N:130@C #3/N:131@N reasonable false
    35518 
    35519 Created 0 bonds 
    35520 
    35521 > bond #3/N:131@C #3/N:132@N reasonable false
    35522 
    35523 Created 0 bonds 
    35524 
    35525 > bond #3/N:132@C #3/N:133@N reasonable false
    35526 
    35527 Created 0 bonds 
    35528 
    35529 > bond #3/N:133@C #3/N:134@N reasonable false
    35530 
    35531 Created 0 bonds 
    35532 
    35533 > bond #3/N:134@C #3/N:135@N reasonable false
    35534 
    35535 Created 0 bonds 
    35536 
    35537 > bond #3/N:135@C #3/N:136@N reasonable false
    35538 
    35539 Created 0 bonds 
    35540 
    35541 > bond #3/N:136@C #3/N:137@N reasonable false
    35542 
    35543 Created 0 bonds 
    35544 
    35545 > bond #3/N:137@C #3/N:138@N reasonable false
    35546 
    35547 Created 0 bonds 
    35548 
    35549 > bond #3/N:138@C #3/N:139@N reasonable false
    35550 
    35551 Created 0 bonds 
    35552 
    35553 > bond #3/N:139@C #3/N:140@N reasonable false
    35554 
    35555 Created 0 bonds 
    35556 
    35557 > bond #3/N:140@C #3/N:141@N reasonable false
    35558 
    35559 Created 0 bonds 
    35560 
    35561 > bond #3/N:141@C #3/N:142@N reasonable false
    35562 
    35563 Created 0 bonds 
    35564 
    35565 > bond #3/N:142@C #3/N:143@N reasonable false
    35566 
    35567 Created 0 bonds 
    35568 
    35569 > bond #3/N:143@C #3/N:144@N reasonable false
    35570 
    35571 Created 0 bonds 
    35572 
    35573 > bond #3/N:144@C #3/N:145@N reasonable false
    35574 
    35575 Created 0 bonds 
    35576 
    35577 > bond #3/N:145@C #3/N:146@N reasonable false
    35578 
    35579 Created 0 bonds 
    35580 
    35581 > bond #3/N:146@C #3/N:147@N reasonable false
    35582 
    35583 Created 0 bonds 
    35584 
    35585 > bond #3/N:42@C #3/N:43@N reasonable false
    35586 
    35587 Created 0 bonds 
    35588 
    35589 > bond #3/N:43@C #3/N:44@N reasonable false
    35590 
    35591 Created 0 bonds 
    35592 
    35593 > bond #3/N:44@C #3/N:45@N reasonable false
    35594 
    35595 Created 0 bonds 
    35596 
    35597 > bond #3/N:45@C #3/N:46@N reasonable false
    35598 
    35599 Created 0 bonds 
    35600 
    35601 > bond #3/N:46@C #3/N:47@N reasonable false
    35602 
    35603 Created 1 bond 
    35604 
    35605 > swapaa #3/N:34 PHE
    35606 
    35607 Using Dunbrack library 
    35608 mutadedModel #3/N ASN 34: phi none, psi 76.1 trans 
    35609 Applying PHE rotamer (chi angles: 62.0 -6.5) to mutadedModel #3/N PHE 34 
    35610 
    35611 > color #3/N:34 yellow
    35612 
    35613 > swapaa #3/N:37 ILE
    35614 
    35615 Using Dunbrack library 
    35616 mutadedModel #3/N PHE 37: phi -128.0, psi -55.9 trans 
    35617 Applying ILE rotamer (chi angles: -61.6 171.6) to mutadedModel #3/N ILE 37 
    35618 
    35619 > color #3/N:37 yellow
    35620 
    35621 > swapaa #3/N:38 THR
    35622 
    35623 Using Dunbrack library 
    35624 mutadedModel #3/N VAL 38: phi -153.1, psi 148.7 trans 
    35625 Applying THR rotamer (chi angles: -57.7) to mutadedModel #3/N THR 38 
    35626 
    35627 > color #3/N:38 yellow
    35628 
    35629 > swapaa #3/N:40 CYS
    35630 
    35631 Using Dunbrack library 
    35632 mutadedModel #3/N SER 40: phi -115.1, psi -165.9 trans 
    35633 Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/N CYS 40 
    35634 
    35635 > color #3/N:40 yellow
    35636 
    35637 > swapaa #3/N:41 GLY
    35638 
    35639 Using Dunbrack library 
    35640 Swapping mutadedModel #3/N PRO 41 to GLY 
    35641 
    35642 > color #3/N:41 yellow
    35643 
    35644 > swapaa #3/N:43 TRP
    35645 
    35646 Using Dunbrack library 
    35647 mutadedModel #3/N ASN 43: phi -59.4, psi -1.7 trans 
    35648 Applying TRP rotamer (chi angles: -178.9 85.5) to mutadedModel #3/N TRP 43 
    35649 
    35650 > color #3/N:43 yellow
    35651 
    35652 > swapaa #3/N:44 GLY
    35653 
    35654 Using Dunbrack library 
    35655 Swapping mutadedModel #3/N SER 44 to GLY 
    35656 
    35657 > color #3/N:44 yellow
    35658 
    35659 > swapaa #3/N:45 GLY
    35660 
    35661 Using Dunbrack library 
    35662 Swapping mutadedModel #3/N SER 45 to GLY 
    35663 
    35664 > color #3/N:45 yellow
    35665 
    35666 > swapaa #3/N:47 MET
    35667 
    35668 Using Dunbrack library 
    35669 mutadedModel #3/N HIS 47: phi 99.0, psi 30.2 trans 
    35670 Applying MET rotamer (chi angles: -66.7 177.1 70.2) to mutadedModel #3/N MET
    35671 47 
    35672 
    35673 > color #3/N:47 yellow
    35674 
    35675 > swapaa #3/N:48 TRP
    35676 
    35677 Using Dunbrack library 
    35678 mutadedModel #3/N ALA 48: phi 163.5, psi 23.2 trans 
    35679 Applying TRP rotamer (chi angles: -177.8 85.5) to mutadedModel #3/N TRP 48 
    35680 
    35681 > color #3/N:48 yellow
    35682 
    35683 > swapaa #3/N:49 SER
    35684 
    35685 Using Dunbrack library 
    35686 mutadedModel #3/N ALA 49: phi -120.9, psi 4.2 trans 
    35687 Applying SER rotamer (chi angles: -62.6) to mutadedModel #3/N SER 49 
    35688 
    35689 > color #3/N:49 yellow
    35690 
    35691 > swapaa #3/N:50 SER
    35692 
    35693 Using Dunbrack library 
    35694 mutadedModel #3/N ALA 50: phi -72.8, psi 128.2 trans 
    35695 Applying SER rotamer (chi angles: 62.6) to mutadedModel #3/N SER 50 
    35696 
    35697 > color #3/N:50 yellow
    35698 
    35699 > swapaa #3/N:51 PHE
    35700 
    35701 Using Dunbrack library 
    35702 mutadedModel #3/N TYR 51: phi -82.3, psi -32.2 trans 
    35703 Applying PHE rotamer (chi angles: -71.7 103.3) to mutadedModel #3/N PHE 51 
    35704 
    35705 > color #3/N:51 yellow
    35706 
    35707 > swapaa #3/N:52 ILE
    35708 
    35709 Using Dunbrack library 
    35710 mutadedModel #3/N LEU 52: phi -69.2, psi -47.9 trans 
    35711 Applying ILE rotamer (chi angles: -62.6 -60.5) to mutadedModel #3/N ILE 52 
    35712 
    35713 > color #3/N:52 yellow
    35714 
    35715 > swapaa #3/N:53 GLN
    35716 
    35717 Using Dunbrack library 
    35718 mutadedModel #3/N TYR 53: phi -100.2, psi -177.3 trans 
    35719 Applying GLN rotamer (chi angles: -59.7 -63.7 -78.6) to mutadedModel #3/N GLN
    35720 53 
    35721 
    35722 > color #3/N:53 yellow
    35723 
    35724 > swapaa #3/N:56 ARG
    35725 
    35726 Using Dunbrack library 
    35727 mutadedModel #3/N ASN 56: phi -68.6, psi 152.6 trans 
    35728 Applying ARG rotamer (chi angles: -174.3 178.1 -178.6 -88.1) to mutadedModel
    35729 #3/N ARG 56 
    35730 
    35731 > color #3/N:56 yellow
    35732 
    35733 > swapaa #3/N:57 PHE
    35734 
    35735 Using Dunbrack library 
    35736 mutadedModel #3/N TYR 57: phi -93.5, psi -24.0 trans 
    35737 Applying PHE rotamer (chi angles: 63.6 106.5) to mutadedModel #3/N PHE 57 
    35738 
    35739 > color #3/N:57 yellow
    35740 
    35741 > swapaa #3/N:58 ASP
    35742 
    35743 Using Dunbrack library 
    35744 mutadedModel #3/N ALA 58: phi -57.9, psi -31.1 trans 
    35745 Applying ASP rotamer (chi angles: 59.3 11.0) to mutadedModel #3/N ASP 58 
    35746 
    35747 > color #3/N:58 yellow
    35748 
    35749 > swapaa #3/N:59 ASN
    35750 
    35751 Using Dunbrack library 
    35752 mutadedModel #3/N PHE 59: phi -83.9, psi -15.5 trans 
    35753 Applying ASN rotamer (chi angles: -71.0 -26.5) to mutadedModel #3/N ASN 59 
    35754 
    35755 > color #3/N:59 yellow
    35756 
    35757 > swapaa #3/N:65 VAL
    35758 
    35759 Using Dunbrack library 
    35760 mutadedModel #3/N GLU 65: phi -72.6, psi -38.0 trans 
    35761 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/N VAL 65 
    35762 
    35763 > color #3/N:65 yellow
    35764 
    35765 > swapaa #3/N:66 VAL
    35766 
    35767 Using Dunbrack library 
    35768 mutadedModel #3/N THR 66: phi -66.6, psi -44.0 trans 
    35769 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/N VAL 66 
    35770 
    35771 > color #3/N:66 yellow
    35772 
    35773 > swapaa #3/N:68 ASN
    35774 
    35775 Using Dunbrack library 
    35776 mutadedModel #3/N LEU 68: phi -26.7, psi -8.2 trans 
    35777 Applying ASN rotamer (chi angles: -70.4 -50.9) to mutadedModel #3/N ASN 68 
    35778 
    35779 > color #3/N:68 yellow
    35780 
    35781 > swapaa #3/N:69 LEU
    35782 
    35783 Using Dunbrack library 
    35784 mutadedModel #3/N ASP 69: phi -81.9, psi -44.4 trans 
    35785 Applying LEU rotamer (chi angles: -66.5 174.5) to mutadedModel #3/N LEU 69 
    35786 
    35787 > color #3/N:69 yellow
    35788 
    35789 > swapaa #3/N:70 ILE
    35790 
    35791 Using Dunbrack library 
    35792 mutadedModel #3/N LEU 70: phi -58.6, psi -27.7 trans 
    35793 Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/N ILE 70 
    35794 
    35795 > color #3/N:70 yellow
    35796 
    35797 > swapaa #3/N:71 MET
    35798 
    35799 Using Dunbrack library 
    35800 mutadedModel #3/N PHE 71: phi -87.2, psi -19.2 trans 
    35801 Applying MET rotamer (chi angles: -65.5 -62.5 97.9) to mutadedModel #3/N MET
    35802 71 
    35803 
    35804 > color #3/N:71 yellow
    35805 
    35806 > swapaa #3/N:75 SER
    35807 
    35808 Using Dunbrack library 
    35809 mutadedModel #3/N ARG 75: phi -79.0, psi -26.6 trans 
    35810 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/N SER 75 
    35811 
    35812 > color #3/N:75 yellow
    35813 
    35814 > swapaa #3/N:78 MET
    35815 
    35816 Using Dunbrack library 
    35817 mutadedModel #3/N PHE 78: phi -73.8, psi -30.9 trans 
    35818 Applying MET rotamer (chi angles: -68.6 -56.5 -66.4) to mutadedModel #3/N MET
    35819 78 
    35820 
    35821 > color #3/N:78 yellow
    35822 
    35823 > swapaa #3/N:82 MET
    35824 
    35825 Using Dunbrack library 
    35826 mutadedModel #3/N LEU 82: phi -82.3, psi -39.3 trans 
    35827 Applying MET rotamer (chi angles: -180.0 -83.6 -71.5) to mutadedModel #3/N MET
    35828 82 
    35829 
    35830 > color #3/N:82 yellow
    35831 
    35832 > swapaa #3/N:83 LEU
    35833 
    35834 Using Dunbrack library 
    35835 mutadedModel #3/N GLU 83: phi -65.2, psi -37.8 trans 
    35836 Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/N LEU 83 
    35837 
    35838 > color #3/N:83 yellow
    35839 
    35840 > swapaa #3/N:85 ASN
    35841 
    35842 Using Dunbrack library 
    35843 mutadedModel #3/N ILE 85: phi -26.5, psi 120.1 trans 
    35844 Applying ASN rotamer (chi angles: -68.1 -33.5) to mutadedModel #3/N ASN 85 
    35845 
    35846 > color #3/N:85 yellow
    35847 
    35848 > swapaa #3/N:86 MET
    35849 
    35850 Using Dunbrack library 
    35851 mutadedModel #3/N LEU 86: phi -117.9, psi 113.2 trans 
    35852 Applying MET rotamer (chi angles: -62.3 -68.5 172.2) to mutadedModel #3/N MET
    35853 86 
    35854 
    35855 > color #3/N:86 yellow
    35856 
    35857 > swapaa #3/N:88 TRP
    35858 
    35859 Using Dunbrack library 
    35860 mutadedModel #3/N TYR 88: phi -80.4, psi -16.0 trans 
    35861 Applying TRP rotamer (chi angles: -69.2 105.7) to mutadedModel #3/N TRP 88 
    35862 
    35863 > color #3/N:88 yellow
    35864 
    35865 > swapaa #3/N:90 GLN
    35866 
    35867 Using Dunbrack library 
    35868 mutadedModel #3/N LEU 90: phi -46.4, psi -48.3 trans 
    35869 Applying GLN rotamer (chi angles: -70.2 176.5 -24.4) to mutadedModel #3/N GLN
    35870 90 
    35871 
    35872 > color #3/N:90 yellow
    35873 
    35874 > swapaa #3/N:91 CYS
    35875 
    35876 Using Dunbrack library 
    35877 mutadedModel #3/N LEU 91: phi -60.2, psi -35.3 trans 
    35878 Applying CYS rotamer (chi angles: -70.0) to mutadedModel #3/N CYS 91 
    35879 
    35880 > color #3/N:91 yellow
    35881 
    35882 > swapaa #3/N:92 MET
    35883 
    35884 Using Dunbrack library 
    35885 mutadedModel #3/N LEU 92: phi -66.2, psi -35.3 trans 
    35886 Applying MET rotamer (chi angles: -68.3 175.6 70.3) to mutadedModel #3/N MET
    35887 92 
    35888 
    35889 > color #3/N:92 yellow
    35890 
    35891 > swapaa #3/N:94 CYS
    35892 
    35893 Using Dunbrack library 
    35894 mutadedModel #3/N LYS 94: phi -71.7, psi -40.6 trans 
    35895 Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/N CYS 94 
    35896 
    35897 > color #3/N:94 yellow
    35898 
    35899 > swapaa #3/N:95 ALA
    35900 
    35901 Using Dunbrack library 
    35902 Swapping mutadedModel #3/N GLU 95 to ALA 
    35903 
    35904 > color #3/N:95 yellow
    35905 
    35906 > swapaa #3/N:97 TYR
    35907 
    35908 Using Dunbrack library 
    35909 mutadedModel #3/N LYS 97: phi -53.2, psi -46.6 trans 
    35910 Applying TYR rotamer (chi angles: 176.9 80.4) to mutadedModel #3/N TYR 97 
    35911 
    35912 > color #3/N:97 yellow
    35913 
    35914 > swapaa #3/N:98 LEU
    35915 
    35916 Using Dunbrack library 
    35917 mutadedModel #3/N ALA 98: phi -73.4, psi -25.3 trans 
    35918 Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/N LEU 98 
    35919 
    35920 > color #3/N:98 yellow
    35921 
    35922 > swapaa #3/N:99 PRO
    35923 
    35924 Using Dunbrack library 
    35925 mutadedModel #3/N THR 99: phi -83.6, psi -26.4 trans 
    35926 Applying PRO rotamer (chi angles: -24.1 35.5) to mutadedModel #3/N PRO 99 
    35927 
    35928 > color #3/N:99 yellow
    35929 
    35930 > swapaa #3/N:101 ILE
    35931 
    35932 Using Dunbrack library 
    35933 mutadedModel #3/N ASN 101: phi -33.3, psi 32.9 trans 
    35934 Applying ILE rotamer (chi angles: 58.8 83.6) to mutadedModel #3/N ILE 101 
    35935 
    35936 > color #3/N:101 yellow
    35937 
    35938 > swapaa #3/N:103 ILE
    35939 
    35940 Using Dunbrack library 
    35941 mutadedModel #3/N LEU 103: phi -32.6, psi 111.7 trans 
    35942 Applying ILE rotamer (chi angles: -168.1 68.0) to mutadedModel #3/N ILE 103 
    35943 
    35944 > color #3/N:103 yellow
    35945 
    35946 > swapaa #3/N:105 GLU
    35947 
    35948 Using Dunbrack library 
    35949 mutadedModel #3/N ALA 105: phi -107.5, psi -76.4 trans 
    35950 Applying GLU rotamer (chi angles: -68.3 177.8 -7.2) to mutadedModel #3/N GLU
    35951 105 
    35952 
    35953 > color #3/N:105 yellow
    35954 
    35955 > swapaa #3/N:107 ALA
    35956 
    35957 Using Dunbrack library 
    35958 Swapping mutadedModel #3/N GLU 107 to ALA 
    35959 
    35960 > color #3/N:107 yellow
    35961 
    35962 > swapaa #3/N:108 GLN
    35963 
    35964 Using Dunbrack library 
    35965 mutadedModel #3/N LEU 108: phi -66.6, psi -37.4 trans 
    35966 Applying GLN rotamer (chi angles: -69.0 176.9 64.2) to mutadedModel #3/N GLN
    35967 108 
    35968 
    35969 > color #3/N:108 yellow
    35970 
    35971 > swapaa #3/N:109 ASN
    35972 
    35973 Using Dunbrack library 
    35974 mutadedModel #3/N GLU 109: phi -62.3, psi -40.0 trans 
    35975 Applying ASN rotamer (chi angles: -73.2 -78.5) to mutadedModel #3/N ASN 109 
    35976 
    35977 > color #3/N:109 yellow
    35978 
    35979 > swapaa #3/N:110 LYS
    35980 
    35981 Using Dunbrack library 
    35982 mutadedModel #3/N ALA 110: phi -60.9, psi -43.3 trans 
    35983 Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to mutadedModel
    35984 #3/N LYS 110 
    35985 
    35986 > color #3/N:110 yellow
    35987 
    35988 > swapaa #3/N:113 LYS
    35989 
    35990 Using Dunbrack library 
    35991 mutadedModel #3/N GLU 113: phi -66.2, psi -34.3 trans 
    35992 Applying LYS rotamer (chi angles: -176.8 61.0 65.9 174.8) to mutadedModel #3/N
    35993 LYS 113 
    35994 
    35995 > color #3/N:113 yellow
    35996 
    35997 > swapaa #3/N:115 MET
    35998 
    35999 Using Dunbrack library 
    36000 mutadedModel #3/N THR 115: phi -64.9, psi -37.1 trans 
    36001 Applying MET rotamer (chi angles: -65.8 -60.5 97.9) to mutadedModel #3/N MET
    36002 115 
    36003 
    36004 > color #3/N:115 yellow
    36005 
    36006 > swapaa #3/N:118 TYR
    36007 
    36008 Using Dunbrack library 
    36009 mutadedModel #3/N ARG 118: phi -74.3, psi -26.4 trans 
    36010 Applying TYR rotamer (chi angles: -71.7 135.6) to mutadedModel #3/N TYR 118 
    36011 
    36012 > color #3/N:118 yellow
    36013 
    36014 > swapaa #3/N:119 SER
    36015 
    36016 Using Dunbrack library 
    36017 mutadedModel #3/N PRO 119: phi -70.7, psi -26.4 trans 
    36018 Applying SER rotamer (chi angles: -66.0) to mutadedModel #3/N SER 119 
    36019 
    36020 > color #3/N:119 yellow
    36021 
    36022 > swapaa #3/N:120 TRP
    36023 
    36024 Using Dunbrack library 
    36025 mutadedModel #3/N ARG 120: phi -89.9, psi -20.6 trans 
    36026 Applying TRP rotamer (chi angles: -67.8 -15.4) to mutadedModel #3/N TRP 120 
    36027 
    36028 > color #3/N:120 yellow
    36029 
    36030 > swapaa #3/N:121 ASN
    36031 
    36032 Using Dunbrack library 
    36033 mutadedModel #3/N LEU 121: phi -118.6, psi 2.1 trans 
    36034 Applying ASN rotamer (chi angles: -66.2 -83.2) to mutadedModel #3/N ASN 121 
    36035 
    36036 > color #3/N:121 yellow
    36037 
    36038 > swapaa #3/N:122 LYS
    36039 
    36040 Using Dunbrack library 
    36041 mutadedModel #3/N ARG 122: phi -65.4, psi 118.6 trans 
    36042 Applying LYS rotamer (chi angles: -169.7 -84.0 -179.2 -177.4) to mutadedModel
    36043 #3/N LYS 122 
    36044 
    36045 > color #3/N:122 yellow
    36046 
    36047 > swapaa #3/N:123 PRO
    36048 
    36049 Using Dunbrack library 
    36050 mutadedModel #3/N VAL 123: phi -64.1, psi -65.8 trans 
    36051 Applying PRO rotamer (chi angles: -27.5 37.7) to mutadedModel #3/N PRO 123 
    36052 
    36053 > color #3/N:123 yellow
    36054 
    36055 > swapaa #3/N:125 ALA
    36056 
    36057 Using Dunbrack library 
    36058 Swapping mutadedModel #3/N SER 125 to ALA 
    36059 
    36060 > color #3/N:125 yellow
    36061 
    36062 > swapaa #3/N:126 MET
    36063 
    36064 Using Dunbrack library 
    36065 mutadedModel #3/N GLN 126: phi -73.7, psi -39.5 trans 
    36066 Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/N MET
    36067 126 
    36068 
    36069 > color #3/N:126 yellow
    36070 
    36071 > swapaa #3/N:128 LYS
    36072 
    36073 Using Dunbrack library 
    36074 mutadedModel #3/N ARG 128: phi -85.7, psi 3.4 trans 
    36075 Applying LYS rotamer (chi angles: -61.7 -63.7 -70.5 -68.2) to mutadedModel
    36076 #3/N LYS 128 
    36077 
    36078 > color #3/N:128 yellow
    36079 
    36080 > swapaa #3/N:129 HIS
    36081 
    36082 Using Dunbrack library 
    36083 mutadedModel #3/N PHE 129: phi -82.1, psi 5.2 trans 
    36084 Applying HIS rotamer (chi angles: 63.8 -98.7) to mutadedModel #3/N HIS 129 
    36085 
    36086 > color #3/N:129 yellow
    36087 
    36088 > swapaa #3/N:130 HIS
    36089 
    36090 Using Dunbrack library 
    36091 mutadedModel #3/N PHE 130: phi -93.4, psi -8.4 trans 
    36092 Applying HIS rotamer (chi angles: 63.4 -128.2) to mutadedModel #3/N HIS 130 
    36093 
    36094 > color #3/N:130 yellow
    36095 
    36096 > swapaa #3/N:131 TYR
    36097 
    36098 Using Dunbrack library 
    36099 mutadedModel #3/N ARG 131: phi -135.6, psi 178.8 trans 
    36100 Applying TYR rotamer (chi angles: -61.2 -2.8) to mutadedModel #3/N TYR 131 
    36101 
    36102 > color #3/N:131 yellow
    36103 
    36104 > swapaa #3/N:134 THR
    36105 
    36106 Using Dunbrack library 
    36107 mutadedModel #3/N VAL 134: phi -86.0, psi 149.1 trans 
    36108 Applying THR rotamer (chi angles: -61.3) to mutadedModel #3/N THR 134 
    36109 
    36110 > color #3/N:134 yellow
    36111 
    36112 > swapaa #3/N:135 VAL
    36113 
    36114 Using Dunbrack library 
    36115 mutadedModel #3/N PRO 135: phi -68.7, psi 139.6 trans 
    36116 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/N VAL 135 
    36117 
    36118 > color #3/N:135 yellow
    36119 
    36120 > swapaa #3/N:140 THR
    36121 
    36122 Using Dunbrack library 
    36123 mutadedModel #3/N VAL 140: phi -101.0, psi -6.7 trans 
    36124 Applying THR rotamer (chi angles: 61.6) to mutadedModel #3/N THR 140 
    36125 
    36126 > color #3/N:140 yellow
    36127 
    36128 > swapaa #3/N:141 GLU
    36129 
    36130 Using Dunbrack library 
    36131 mutadedModel #3/N LEU 141: phi -44.0, psi -23.9 trans 
    36132 Applying GLU rotamer (chi angles: -69.4 177.7 -7.7) to mutadedModel #3/N GLU
    36133 141 
    36134 
    36135 > color #3/N:141 yellow
    36136 
    36137 > swapaa #3/N:142 LYS
    36138 
    36139 Using Dunbrack library 
    36140 mutadedModel #3/N GLU 142: phi -76.2, psi -23.7 trans 
    36141 Applying LYS rotamer (chi angles: -66.1 -173.9 -73.0 -66.8) to mutadedModel
    36142 #3/N LYS 142 
    36143 
    36144 > color #3/N:142 yellow
    36145 
    36146 > swapaa #3/N:143 TYR
    36147 
    36148 Using Dunbrack library 
    36149 mutadedModel #3/N GLY 143: phi -99.4, psi 16.4 trans 
    36150 Applying TYR rotamer (chi angles: -64.7 101.8) to mutadedModel #3/N TYR 143 
    36151 
    36152 > color #3/N:143 yellow
    36153 
    36154 > swapaa #3/N:144 ILE
    36155 
    36156 Using Dunbrack library 
    36157 mutadedModel #3/N LEU 144: phi -88.6, psi 146.7 trans 
    36158 Applying ILE rotamer (chi angles: -62.8 169.5) to mutadedModel #3/N ILE 144 
    36159 
    36160 > color #3/N:144 yellow
    36161 
    36162 > swapaa #3/N:145 THR
    36163 
    36164 Using Dunbrack library 
    36165 mutadedModel #3/N ARG 145: phi -90.7, psi 134.8 trans 
    36166 Applying THR rotamer (chi angles: 58.6) to mutadedModel #3/N THR 145 
    36167 
    36168 > color #3/N:145 yellow
    36169 
    36170 > swapaa #3/N:146 GLU
    36171 
    36172 Using Dunbrack library 
    36173 mutadedModel #3/N SER 146: phi -56.1, psi 171.9 trans 
    36174 Applying GLU rotamer (chi angles: 70.4 -82.2 10.3) to mutadedModel #3/N GLU
    36175 146 
    36176 
    36177 > color #3/N:146 yellow
    36178 
    36179 > swapaa #3/N:147 MET
    36180 
    36181 Using Dunbrack library 
    36182 mutadedModel #3/N GLY 147: phi -166.5, psi none trans 
    36183 Applying MET rotamer (chi angles: -174.6 179.7 -71.6) to mutadedModel #3/N MET
    36184 147 
    36185 
    36186 > color #3/N:147 yellow
    36187 
    36188 > select #3/4
    36189 
    36190 3464 atoms, 3487 bonds, 3 pseudobonds, 453 residues, 2 models selected 
    36191 
    36192 > bond #3/4:30@C #3/4:31@N reasonable false
    36193 
    36194 Created 0 bonds 
    36195 
    36196 > bond #3/4:31@C #3/4:32@N reasonable false
    36197 
    36198 Created 0 bonds 
    36199 
    36200 > bond #3/4:32@C #3/4:33@N reasonable false
    36201 
    36202 Created 1 bond 
    36203 
    36204 > bond #3/4:272@C #3/4:273@N reasonable false
    36205 
    36206 Created 0 bonds 
    36207 
    36208 > bond #3/4:273@C #3/4:274@N reasonable false
    36209 
    36210 Created 1 bond 
    36211 
    36212 > bond #3/4:274@C #3/4:275@N reasonable false
    36213 
    36214 Created 0 bonds 
    36215 
    36216 > bond #3/4:275@C #3/4:276@N reasonable false
    36217 
    36218 Created 0 bonds 
    36219 
    36220 > bond #3/4:276@C #3/4:277@N reasonable false
    36221 
    36222 Created 0 bonds 
    36223 
    36224 > bond #3/4:277@C #3/4:278@N reasonable false
    36225 
    36226 Created 0 bonds 
    36227 
    36228 > bond #3/4:278@C #3/4:279@N reasonable false
    36229 
    36230 Created 0 bonds 
    36231 
    36232 > bond #3/4:279@C #3/4:280@N reasonable false
    36233 
    36234 Created 0 bonds 
    36235 
    36236 > bond #3/4:280@C #3/4:281@N reasonable false
    36237 
    36238 Created 0 bonds 
    36239 
    36240 > bond #3/4:281@C #3/4:282@N reasonable false
    36241 
    36242 Created 0 bonds 
    36243 
    36244 > bond #3/4:282@C #3/4:283@N reasonable false
    36245 
    36246 Created 0 bonds 
    36247 
    36248 > bond #3/4:283@C #3/4:284@N reasonable false
    36249 
    36250 Created 0 bonds 
    36251 
    36252 > bond #3/4:284@C #3/4:285@N reasonable false
    36253 
    36254 Created 0 bonds 
    36255 
    36256 > bond #3/4:285@C #3/4:286@N reasonable false
    36257 
    36258 Created 1 bond 
    36259 
    36260 > bond #3/4:291@C #3/4:292@N reasonable false
    36261 
    36262 Created 0 bonds 
    36263 
    36264 > bond #3/4:292@C #3/4:293@N reasonable false
    36265 
    36266 Created 0 bonds 
    36267 
    36268 > bond #3/4:293@C #3/4:294@N reasonable false
    36269 
    36270 Created 0 bonds 
    36271 
    36272 > bond #3/4:294@C #3/4:295@N reasonable false
    36273 
    36274 Created 0 bonds 
    36275 
    36276 > bond #3/4:295@C #3/4:296@N reasonable false
    36277 
    36278 Created 0 bonds 
    36279 
    36280 > bond #3/4:296@C #3/4:297@N reasonable false
    36281 
    36282 Created 0 bonds 
    36283 
    36284 > bond #3/4:297@C #3/4:298@N reasonable false
    36285 
    36286 Created 0 bonds 
    36287 
    36288 > bond #3/4:298@C #3/4:299@N reasonable false
    36289 
    36290 Created 0 bonds 
    36291 
    36292 > bond #3/4:299@C #3/4:300@N reasonable false
    36293 
    36294 Created 0 bonds 
    36295 
    36296 > bond #3/4:300@C #3/4:301@N reasonable false
    36297 
    36298 Created 0 bonds 
    36299 
    36300 > bond #3/4:301@C #3/4:302@N reasonable false
    36301 
    36302 Created 0 bonds 
    36303 
    36304 > bond #3/4:302@C #3/4:303@N reasonable false
    36305 
    36306 Created 0 bonds 
    36307 
    36308 > bond #3/4:303@C #3/4:304@N reasonable false
    36309 
    36310 Created 1 bond 
    36311 
    36312 > bond #3/4:144@C #3/4:145@N reasonable false
    36313 
    36314 Created 0 bonds 
    36315 
    36316 > bond #3/4:145@C #3/4:146@N reasonable false
    36317 
    36318 Created 0 bonds 
    36319 
    36320 > bond #3/4:146@C #3/4:147@N reasonable false
    36321 
    36322 Created 0 bonds 
    36323 
    36324 > bond #3/4:147@C #3/4:148@N reasonable false
    36325 
    36326 Created 0 bonds 
    36327 
    36328 > bond #3/4:148@C #3/4:149@N reasonable false
    36329 
    36330 Created 0 bonds 
    36331 
    36332 > bond #3/4:149@C #3/4:150@N reasonable false
    36333 
    36334 Created 0 bonds 
    36335 
    36336 > bond #3/4:150@C #3/4:151@N reasonable false
    36337 
    36338 Created 0 bonds 
    36339 
    36340 > bond #3/4:151@C #3/4:152@N reasonable false
    36341 
    36342 Created 1 bond 
    36343 
    36344 > bond #3/4:200@C #3/4:201@N reasonable false
    36345 
    36346 Created 0 bonds 
    36347 
    36348 > bond #3/4:201@C #3/4:202@N reasonable false
    36349 
    36350 Created 0 bonds 
    36351 
    36352 > bond #3/4:202@C #3/4:203@N reasonable false
    36353 
    36354 Created 0 bonds 
    36355 
    36356 > bond #3/4:203@C #3/4:204@N reasonable false
    36357 
    36358 Created 0 bonds 
    36359 
    36360 > bond #3/4:204@C #3/4:205@N reasonable false
    36361 
    36362 Created 0 bonds 
    36363 
    36364 > bond #3/4:205@C #3/4:206@N reasonable false
    36365 
    36366 Created 0 bonds 
    36367 
    36368 > bond #3/4:206@C #3/4:207@N reasonable false
    36369 
    36370 Created 0 bonds 
    36371 
    36372 > bond #3/4:207@C #3/4:208@N reasonable false
    36373 
    36374 Created 0 bonds 
    36375 
    36376 > bond #3/4:208@C #3/4:209@N reasonable false
    36377 
    36378 Created 0 bonds 
    36379 
    36380 > bond #3/4:209@C #3/4:210@N reasonable false
    36381 
    36382 Created 0 bonds 
    36383 
    36384 > bond #3/4:210@C #3/4:211@N reasonable false
    36385 
    36386 Created 0 bonds 
    36387 
    36388 > bond #3/4:211@C #3/4:212@N reasonable false
    36389 
    36390 Created 0 bonds 
    36391 
    36392 > bond #3/4:212@C #3/4:213@N reasonable false
    36393 
    36394 Created 0 bonds 
    36395 
    36396 > bond #3/4:213@C #3/4:214@N reasonable false
    36397 
    36398 Created 0 bonds 
    36399 
    36400 > bond #3/4:214@C #3/4:215@N reasonable false
    36401 
    36402 Created 0 bonds 
    36403 
    36404 > bond #3/4:215@C #3/4:216@N reasonable false
    36405 
    36406 Created 0 bonds 
    36407 
    36408 > bond #3/4:216@C #3/4:217@N reasonable false
    36409 
    36410 Created 0 bonds 
    36411 
    36412 > bond #3/4:217@C #3/4:218@N reasonable false
    36413 
    36414 Created 0 bonds 
    36415 
    36416 > bond #3/4:218@C #3/4:219@N reasonable false
    36417 
    36418 Created 0 bonds 
    36419 
    36420 > bond #3/4:219@C #3/4:220@N reasonable false
    36421 
    36422 Created 0 bonds 
    36423 
    36424 > bond #3/4:220@C #3/4:221@N reasonable false
    36425 
    36426 Created 0 bonds 
    36427 
    36428 > bond #3/4:221@C #3/4:222@N reasonable false
    36429 
    36430 Created 0 bonds 
    36431 
    36432 > bond #3/4:222@C #3/4:223@N reasonable false
    36433 
    36434 Created 0 bonds 
    36435 
    36436 > bond #3/4:223@C #3/4:224@N reasonable false
    36437 
    36438 Created 0 bonds 
    36439 
    36440 > bond #3/4:224@C #3/4:225@N reasonable false
    36441 
    36442 Created 0 bonds 
    36443 
    36444 > bond #3/4:225@C #3/4:226@N reasonable false
    36445 
    36446 Created 0 bonds 
    36447 
    36448 > bond #3/4:226@C #3/4:227@N reasonable false
    36449 
    36450 Created 0 bonds 
    36451 
    36452 > bond #3/4:227@C #3/4:228@N reasonable false
    36453 
    36454 Created 0 bonds 
    36455 
    36456 > bond #3/4:228@C #3/4:229@N reasonable false
    36457 
    36458 Created 0 bonds 
    36459 
    36460 > bond #3/4:229@C #3/4:230@N reasonable false
    36461 
    36462 Created 0 bonds 
    36463 
    36464 > bond #3/4:230@C #3/4:231@N reasonable false
    36465 
    36466 Created 0 bonds 
    36467 
    36468 > bond #3/4:231@C #3/4:232@N reasonable false
    36469 
    36470 Created 0 bonds 
    36471 
    36472 > bond #3/4:232@C #3/4:233@N reasonable false
    36473 
    36474 Created 0 bonds 
    36475 
    36476 > bond #3/4:233@C #3/4:234@N reasonable false
    36477 
    36478 Created 0 bonds 
    36479 
    36480 > bond #3/4:234@C #3/4:235@N reasonable false
    36481 
    36482 Created 0 bonds 
    36483 
    36484 > bond #3/4:235@C #3/4:236@N reasonable false
    36485 
    36486 Created 0 bonds 
    36487 
    36488 > bond #3/4:236@C #3/4:237@N reasonable false
    36489 
    36490 Created 0 bonds 
    36491 
    36492 > bond #3/4:237@C #3/4:238@N reasonable false
    36493 
    36494 Created 0 bonds 
    36495 
    36496 > bond #3/4:238@C #3/4:239@N reasonable false
    36497 
    36498 Created 0 bonds 
    36499 
    36500 > bond #3/4:239@C #3/4:240@N reasonable false
    36501 
    36502 Created 0 bonds 
    36503 
    36504 > bond #3/4:240@C #3/4:241@N reasonable false
    36505 
    36506 Created 0 bonds 
    36507 
    36508 > bond #3/4:241@C #3/4:242@N reasonable false
    36509 
    36510 Created 0 bonds 
    36511 
    36512 > bond #3/4:242@C #3/4:243@N reasonable false
    36513 
    36514 Created 0 bonds 
    36515 
    36516 > bond #3/4:243@C #3/4:244@N reasonable false
    36517 
    36518 Created 0 bonds 
    36519 
    36520 > bond #3/4:244@C #3/4:245@N reasonable false
    36521 
    36522 Created 0 bonds 
    36523 
    36524 > bond #3/4:245@C #3/4:246@N reasonable false
    36525 
    36526 Created 0 bonds 
    36527 
    36528 > bond #3/4:246@C #3/4:247@N reasonable false
    36529 
    36530 Created 0 bonds 
    36531 
    36532 > bond #3/4:247@C #3/4:248@N reasonable false
    36533 
    36534 Created 0 bonds 
    36535 
    36536 > bond #3/4:248@C #3/4:249@N reasonable false
    36537 
    36538 Created 0 bonds 
    36539 
    36540 > bond #3/4:249@C #3/4:250@N reasonable false
    36541 
    36542 Created 0 bonds 
    36543 
    36544 > bond #3/4:250@C #3/4:251@N reasonable false
    36545 
    36546 Created 0 bonds 
    36547 
    36548 > bond #3/4:251@C #3/4:252@N reasonable false
    36549 
    36550 Created 0 bonds 
    36551 
    36552 > bond #3/4:252@C #3/4:253@N reasonable false
    36553 
    36554 Created 0 bonds 
    36555 
    36556 > bond #3/4:253@C #3/4:254@N reasonable false
    36557 
    36558 Created 0 bonds 
    36559 
    36560 > bond #3/4:254@C #3/4:255@N reasonable false
    36561 
    36562 Created 0 bonds 
    36563 
    36564 > bond #3/4:255@C #3/4:256@N reasonable false
    36565 
    36566 Created 0 bonds 
    36567 
    36568 > bond #3/4:256@C #3/4:257@N reasonable false
    36569 
    36570 Created 0 bonds 
    36571 
    36572 > bond #3/4:257@C #3/4:258@N reasonable false
    36573 
    36574 Created 0 bonds 
    36575 
    36576 > bond #3/4:258@C #3/4:259@N reasonable false
    36577 
    36578 Created 0 bonds 
    36579 
    36580 > bond #3/4:259@C #3/4:260@N reasonable false
    36581 
    36582 Created 0 bonds 
    36583 
    36584 > bond #3/4:260@C #3/4:261@N reasonable false
    36585 
    36586 Created 0 bonds 
    36587 
    36588 > bond #3/4:261@C #3/4:262@N reasonable false
    36589 
    36590 Created 0 bonds 
    36591 
    36592 > bond #3/4:262@C #3/4:263@N reasonable false
    36593 
    36594 Created 0 bonds 
    36595 
    36596 > bond #3/4:263@C #3/4:264@N reasonable false
    36597 
    36598 Created 0 bonds 
    36599 
    36600 > bond #3/4:264@C #3/4:265@N reasonable false
    36601 
    36602 Created 0 bonds 
    36603 
    36604 > bond #3/4:265@C #3/4:266@N reasonable false
    36605 
    36606 Created 0 bonds 
    36607 
    36608 > bond #3/4:266@C #3/4:267@N reasonable false
    36609 
    36610 Created 0 bonds 
    36611 
    36612 > bond #3/4:267@C #3/4:268@N reasonable false
    36613 
    36614 Created 0 bonds 
    36615 
    36616 > bond #3/4:268@C #3/4:269@N reasonable false
    36617 
    36618 Created 0 bonds 
    36619 
    36620 > bond #3/4:269@C #3/4:270@N reasonable false
    36621 
    36622 Created 1 bond 
    36623 
    36624 > bond #3/4:314@C #3/4:315@N reasonable false
    36625 
    36626 Created 0 bonds 
    36627 
    36628 > bond #3/4:315@C #3/4:316@N reasonable false
    36629 
    36630 Created 0 bonds 
    36631 
    36632 > bond #3/4:316@C #3/4:317@N reasonable false
    36633 
    36634 Created 0 bonds 
    36635 
    36636 > bond #3/4:317@C #3/4:318@N reasonable false
    36637 
    36638 Created 0 bonds 
    36639 
    36640 > bond #3/4:318@C #3/4:319@N reasonable false
    36641 
    36642 Created 0 bonds 
    36643 
    36644 > bond #3/4:319@C #3/4:320@N reasonable false
    36645 
    36646 Created 0 bonds 
    36647 
    36648 > bond #3/4:320@C #3/4:321@N reasonable false
    36649 
    36650 Created 1 bond 
    36651 
    36652 > bond #3/4:25@C #3/4:26@N reasonable false
    36653 
    36654 Created 0 bonds 
    36655 
    36656 > bond #3/4:26@C #3/4:27@N reasonable false
    36657 
    36658 Created 0 bonds 
    36659 
    36660 > bond #3/4:27@C #3/4:28@N reasonable false
    36661 
    36662 Created 0 bonds 
    36663 
    36664 > bond #3/4:28@C #3/4:29@N reasonable false
    36665 
    36666 Created 0 bonds 
    36667 
    36668 > bond #3/4:29@C #3/4:30@N reasonable false
    36669 
    36670 Created 1 bond 
    36671 
    36672 > bond #3/4:399@C #3/4:400@N reasonable false
    36673 
    36674 Created 0 bonds 
    36675 
    36676 > bond #3/4:400@C #3/4:401@N reasonable false
    36677 
    36678 Created 0 bonds 
    36679 
    36680 > bond #3/4:401@C #3/4:402@N reasonable false
    36681 
    36682 Created 0 bonds 
    36683 
    36684 > bond #3/4:402@C #3/4:403@N reasonable false
    36685 
    36686 Created 0 bonds 
    36687 
    36688 > bond #3/4:403@C #3/4:404@N reasonable false
    36689 
    36690 Created 1 bond 
    36691 
    36692 > bond #3/4:404@C #3/4:405@N reasonable false
    36693 
    36694 Created 0 bonds 
    36695 
    36696 > bond #3/4:286@C #3/4:287@N reasonable false
    36697 
    36698 Created 0 bonds 
    36699 
    36700 > bond #3/4:287@C #3/4:288@N reasonable false
    36701 
    36702 Created 0 bonds 
    36703 
    36704 > bond #3/4:288@C #3/4:289@N reasonable false
    36705 
    36706 Created 0 bonds 
    36707 
    36708 > bond #3/4:289@C #3/4:290@N reasonable false
    36709 
    36710 Created 0 bonds 
    36711 
    36712 > bond #3/4:290@C #3/4:291@N reasonable false
    36713 
    36714 Created 1 bond 
    36715 
    36716 > bond #3/4:354@C #3/4:355@N reasonable false
    36717 
    36718 Created 0 bonds 
    36719 
    36720 > bond #3/4:355@C #3/4:356@N reasonable false
    36721 
    36722 Created 1 bond 
    36723 
    36724 > bond #3/4:311@C #3/4:312@N reasonable false
    36725 
    36726 Created 0 bonds 
    36727 
    36728 > bond #3/4:312@C #3/4:313@N reasonable false
    36729 
    36730 Created 0 bonds 
    36731 
    36732 > bond #3/4:313@C #3/4:314@N reasonable false
    36733 
    36734 Created 1 bond 
    36735 
    36736 > bond #3/4:270@C #3/4:271@N reasonable false
    36737 
    36738 Created 0 bonds 
    36739 
    36740 > bond #3/4:271@C #3/4:272@N reasonable false
    36741 
    36742 Created 1 bond 
    36743 
    36744 > bond #3/4:155@C #3/4:156@N reasonable false
    36745 
    36746 Created 0 bonds 
    36747 
    36748 > bond #3/4:353@C #3/4:354@N reasonable false
    36749 
    36750 Created 1 bond 
    36751 
    36752 > bond #3/4:153@C #3/4:154@N reasonable false
    36753 
    36754 Created 0 bonds 
    36755 
    36756 > bond #3/4:154@C #3/4:155@N reasonable false
    36757 
    36758 Created 1 bond 
    36759 
    36760 > bond #3/4:33@C #3/4:34@N reasonable false
    36761 
    36762 Created 1 bond 
    36763 
    36764 > bond #3/4:474@C #3/4:475@N reasonable false
    36765 
    36766 Created 0 bonds 
    36767 
    36768 > bond #3/4:475@C #3/4:476@N reasonable false
    36769 
    36770 Created 1 bond 
    36771 
    36772 > bond #3/4:472@C #3/4:473@N reasonable false
    36773 
    36774 Created 1 bond 
    36775 
    36776 > bond #3/4:387@C #3/4:388@N reasonable false
    36777 
    36778 Created 0 bonds 
    36779 
    36780 > bond #3/4:388@C #3/4:389@N reasonable false
    36781 
    36782 Created 1 bond 
    36783 
    36784 > bond #3/4:152@C #3/4:153@N reasonable false
    36785 
    36786 Created 1 bond 
    36787 
    36788 > bond #3/4:470@C #3/4:471@N reasonable false
    36789 
    36790 Created 0 bonds 
    36791 
    36792 > bond #3/4:471@C #3/4:472@N reasonable false
    36793 
    36794 Created 1 bond 
    36795 
    36796 > bond #3/4:380@C #3/4:381@N reasonable false
    36797 
    36798 Created 1 bond 
    36799 
    36800 > bond #3/4:473@C #3/4:474@N reasonable false
    36801 
    36802 Created 1 bond 
    36803 
    36804 > bond #3/4:309@C #3/4:310@N reasonable false
    36805 
    36806 Created 0 bonds 
    36807 
    36808 > bond #3/4:310@C #3/4:311@N reasonable false
    36809 
    36810 Created 1 bond 
    36811 
    36812 > bond #3/4:469@C #3/4:470@N reasonable false
    36813 
    36814 Created 1 bond 
    36815 
    36816 > bond #3/4:101@C #3/4:102@N reasonable false
    36817 
    36818 Created 0 bonds 
    36819 
    36820 > bond #3/4:102@C #3/4:103@N reasonable false
    36821 
    36822 Created 0 bonds 
    36823 
    36824 > bond #3/4:103@C #3/4:104@N reasonable false
    36825 
    36826 Created 0 bonds 
    36827 
    36828 > bond #3/4:104@C #3/4:105@N reasonable false
    36829 
    36830 Created 0 bonds 
    36831 
    36832 > bond #3/4:105@C #3/4:106@N reasonable false
    36833 
    36834 Created 0 bonds 
    36835 
    36836 > bond #3/4:106@C #3/4:107@N reasonable false
    36837 
    36838 Created 0 bonds 
    36839 
    36840 > bond #3/4:107@C #3/4:108@N reasonable false
    36841 
    36842 Created 0 bonds 
    36843 
    36844 > bond #3/4:108@C #3/4:109@N reasonable false
    36845 
    36846 Created 0 bonds 
    36847 
    36848 > bond #3/4:109@C #3/4:110@N reasonable false
    36849 
    36850 Created 0 bonds 
    36851 
    36852 > bond #3/4:110@C #3/4:111@N reasonable false
    36853 
    36854 Created 0 bonds 
    36855 
    36856 > bond #3/4:111@C #3/4:112@N reasonable false
    36857 
    36858 Created 0 bonds 
    36859 
    36860 > bond #3/4:112@C #3/4:113@N reasonable false
    36861 
    36862 Created 0 bonds 
    36863 
    36864 > bond #3/4:113@C #3/4:114@N reasonable false
    36865 
    36866 Created 0 bonds 
    36867 
    36868 > bond #3/4:114@C #3/4:115@N reasonable false
    36869 
    36870 Created 0 bonds 
    36871 
    36872 > bond #3/4:115@C #3/4:116@N reasonable false
    36873 
    36874 Created 0 bonds 
    36875 
    36876 > bond #3/4:116@C #3/4:117@N reasonable false
    36877 
    36878 Created 0 bonds 
    36879 
    36880 > bond #3/4:117@C #3/4:118@N reasonable false
    36881 
    36882 Created 0 bonds 
    36883 
    36884 > bond #3/4:118@C #3/4:119@N reasonable false
    36885 
    36886 Created 0 bonds 
    36887 
    36888 > bond #3/4:119@C #3/4:120@N reasonable false
    36889 
    36890 Created 0 bonds 
    36891 
    36892 > bond #3/4:120@C #3/4:121@N reasonable false
    36893 
    36894 Created 0 bonds 
    36895 
    36896 > bond #3/4:121@C #3/4:122@N reasonable false
    36897 
    36898 Created 0 bonds 
    36899 
    36900 > bond #3/4:122@C #3/4:123@N reasonable false
    36901 
    36902 Created 0 bonds 
    36903 
    36904 > bond #3/4:123@C #3/4:124@N reasonable false
    36905 
    36906 Created 0 bonds 
    36907 
    36908 > bond #3/4:124@C #3/4:125@N reasonable false
    36909 
    36910 Created 0 bonds 
    36911 
    36912 > bond #3/4:125@C #3/4:126@N reasonable false
    36913 
    36914 Created 1 bond 
    36915 
    36916 > bond #3/4:87@C #3/4:88@N reasonable false
    36917 
    36918 Created 0 bonds 
    36919 
    36920 > bond #3/4:88@C #3/4:89@N reasonable false
    36921 
    36922 Created 0 bonds 
    36923 
    36924 > bond #3/4:89@C #3/4:90@N reasonable false
    36925 
    36926 Created 0 bonds 
    36927 
    36928 > bond #3/4:90@C #3/4:91@N reasonable false
    36929 
    36930 Created 0 bonds 
    36931 
    36932 > bond #3/4:91@C #3/4:92@N reasonable false
    36933 
    36934 Created 0 bonds 
    36935 
    36936 > bond #3/4:92@C #3/4:93@N reasonable false
    36937 
    36938 Created 0 bonds 
    36939 
    36940 > bond #3/4:93@C #3/4:94@N reasonable false
    36941 
    36942 Created 0 bonds 
    36943 
    36944 > bond #3/4:94@C #3/4:95@N reasonable false
    36945 
    36946 Created 0 bonds 
    36947 
    36948 > bond #3/4:95@C #3/4:96@N reasonable false
    36949 
    36950 Created 0 bonds 
    36951 
    36952 > bond #3/4:96@C #3/4:97@N reasonable false
    36953 
    36954 Created 0 bonds 
    36955 
    36956 > bond #3/4:97@C #3/4:98@N reasonable false
    36957 
    36958 Created 0 bonds 
    36959 
    36960 > bond #3/4:98@C #3/4:99@N reasonable false
    36961 
    36962 Created 0 bonds 
    36963 
    36964 > bond #3/4:99@C #3/4:100@N reasonable false
    36965 
    36966 Created 0 bonds 
    36967 
    36968 > bond #3/4:100@C #3/4:101@N reasonable false
    36969 
    36970 Created 1 bond 
    36971 
    36972 > bond #3/4:80@C #3/4:81@N reasonable false
    36973 
    36974 Created 0 bonds 
    36975 
    36976 > bond #3/4:81@C #3/4:82@N reasonable false
    36977 
    36978 Created 0 bonds 
    36979 
    36980 > bond #3/4:82@C #3/4:83@N reasonable false
    36981 
    36982 Created 0 bonds 
    36983 
    36984 > bond #3/4:83@C #3/4:84@N reasonable false
    36985 
    36986 Created 0 bonds 
    36987 
    36988 > bond #3/4:84@C #3/4:85@N reasonable false
    36989 
    36990 Created 0 bonds 
    36991 
    36992 > bond #3/4:85@C #3/4:86@N reasonable false
    36993 
    36994 Created 0 bonds 
    36995 
    36996 > bond #3/4:86@C #3/4:87@N reasonable false
    36997 
    36998 Created 1 bond 
    36999 
    37000 > bond #3/4:34@C #3/4:35@N reasonable false
    37001 
    37002 Created 0 bonds 
    37003 
    37004 > bond #3/4:35@C #3/4:36@N reasonable false
    37005 
    37006 Created 0 bonds 
    37007 
    37008 > bond #3/4:36@C #3/4:37@N reasonable false
    37009 
    37010 Created 0 bonds 
    37011 
    37012 > bond #3/4:37@C #3/4:38@N reasonable false
    37013 
    37014 Created 0 bonds 
    37015 
    37016 > bond #3/4:38@C #3/4:39@N reasonable false
    37017 
    37018 Created 0 bonds 
    37019 
    37020 > bond #3/4:39@C #3/4:40@N reasonable false
    37021 
    37022 Created 0 bonds 
    37023 
    37024 > bond #3/4:407@C #3/4:408@N reasonable false
    37025 
    37026 Created 0 bonds 
    37027 
    37028 > bond #3/4:408@C #3/4:409@N reasonable false
    37029 
    37030 Created 0 bonds 
    37031 
    37032 > bond #3/4:409@C #3/4:410@N reasonable false
    37033 
    37034 Created 0 bonds 
    37035 
    37036 > bond #3/4:410@C #3/4:411@N reasonable false
    37037 
    37038 Created 0 bonds 
    37039 
    37040 > bond #3/4:411@C #3/4:412@N reasonable false
    37041 
    37042 Created 0 bonds 
    37043 
    37044 > bond #3/4:412@C #3/4:413@N reasonable false
    37045 
    37046 Created 0 bonds 
    37047 
    37048 > bond #3/4:413@C #3/4:414@N reasonable false
    37049 
    37050 Created 0 bonds 
    37051 
    37052 > bond #3/4:414@C #3/4:415@N reasonable false
    37053 
    37054 Created 0 bonds 
    37055 
    37056 > bond #3/4:415@C #3/4:416@N reasonable false
    37057 
    37058 Created 0 bonds 
    37059 
    37060 > bond #3/4:416@C #3/4:417@N reasonable false
    37061 
    37062 Created 0 bonds 
    37063 
    37064 > bond #3/4:417@C #3/4:418@N reasonable false
    37065 
    37066 Created 0 bonds 
    37067 
    37068 > bond #3/4:418@C #3/4:419@N reasonable false
    37069 
    37070 Created 0 bonds 
    37071 
    37072 > bond #3/4:419@C #3/4:420@N reasonable false
    37073 
    37074 Created 0 bonds 
    37075 
    37076 > bond #3/4:420@C #3/4:421@N reasonable false
    37077 
    37078 Created 0 bonds 
    37079 
    37080 > bond #3/4:421@C #3/4:422@N reasonable false
    37081 
    37082 Created 0 bonds 
    37083 
    37084 > bond #3/4:422@C #3/4:423@N reasonable false
    37085 
    37086 Created 0 bonds 
    37087 
    37088 > bond #3/4:423@C #3/4:424@N reasonable false
    37089 
    37090 Created 0 bonds 
    37091 
    37092 > bond #3/4:424@C #3/4:425@N reasonable false
    37093 
    37094 Created 0 bonds 
    37095 
    37096 > bond #3/4:425@C #3/4:426@N reasonable false
    37097 
    37098 Created 0 bonds 
    37099 
    37100 > bond #3/4:426@C #3/4:427@N reasonable false
    37101 
    37102 Created 1 bond 
    37103 
    37104 > bond #3/4:511@C #3/4:512@N reasonable false
    37105 
    37106 Created 0 bonds 
    37107 
    37108 > bond #3/4:512@C #3/4:513@N reasonable false
    37109 
    37110 Created 0 bonds 
    37111 
    37112 > bond #3/4:513@C #3/4:514@N reasonable false
    37113 
    37114 Created 0 bonds 
    37115 
    37116 > bond #3/4:514@C #3/4:515@N reasonable false
    37117 
    37118 Created 0 bonds 
    37119 
    37120 > bond #3/4:515@C #3/4:516@N reasonable false
    37121 
    37122 Created 0 bonds 
    37123 
    37124 > bond #3/4:516@C #3/4:517@N reasonable false
    37125 
    37126 Created 0 bonds 
    37127 
    37128 > bond #3/4:517@C #3/4:518@N reasonable false
    37129 
    37130 Created 0 bonds 
    37131 
    37132 > bond #3/4:518@C #3/4:519@N reasonable false
    37133 
    37134 Created 0 bonds 
    37135 
    37136 > bond #3/4:519@C #3/4:520@N reasonable false
    37137 
    37138 Created 0 bonds 
    37139 
    37140 > bond #3/4:520@C #3/4:521@N reasonable false
    37141 
    37142 Created 0 bonds 
    37143 
    37144 > bond #3/4:521@C #3/4:522@N reasonable false
    37145 
    37146 Created 0 bonds 
    37147 
    37148 > bond #3/4:435@C #3/4:436@N reasonable false
    37149 
    37150 Created 0 bonds 
    37151 
    37152 > bond #3/4:436@C #3/4:437@N reasonable false
    37153 
    37154 Created 0 bonds 
    37155 
    37156 > bond #3/4:437@C #3/4:438@N reasonable false
    37157 
    37158 Created 0 bonds 
    37159 
    37160 > bond #3/4:438@C #3/4:439@N reasonable false
    37161 
    37162 Created 0 bonds 
    37163 
    37164 > bond #3/4:439@C #3/4:440@N reasonable false
    37165 
    37166 Created 0 bonds 
    37167 
    37168 > bond #3/4:440@C #3/4:441@N reasonable false
    37169 
    37170 Created 0 bonds 
    37171 
    37172 > bond #3/4:441@C #3/4:442@N reasonable false
    37173 
    37174 Created 0 bonds 
    37175 
    37176 > bond #3/4:442@C #3/4:443@N reasonable false
    37177 
    37178 Created 0 bonds 
    37179 
    37180 > bond #3/4:443@C #3/4:444@N reasonable false
    37181 
    37182 Created 0 bonds 
    37183 
    37184 > bond #3/4:444@C #3/4:445@N reasonable false
    37185 
    37186 Created 0 bonds 
    37187 
    37188 > bond #3/4:445@C #3/4:446@N reasonable false
    37189 
    37190 Created 0 bonds 
    37191 
    37192 > bond #3/4:446@C #3/4:447@N reasonable false
    37193 
    37194 Created 0 bonds 
    37195 
    37196 > bond #3/4:447@C #3/4:448@N reasonable false
    37197 
    37198 Created 0 bonds 
    37199 
    37200 > bond #3/4:448@C #3/4:449@N reasonable false
    37201 
    37202 Created 0 bonds 
    37203 
    37204 > bond #3/4:449@C #3/4:450@N reasonable false
    37205 
    37206 Created 0 bonds 
    37207 
    37208 > bond #3/4:450@C #3/4:451@N reasonable false
    37209 
    37210 Created 0 bonds 
    37211 
    37212 > bond #3/4:451@C #3/4:452@N reasonable false
    37213 
    37214 Created 0 bonds 
    37215 
    37216 > bond #3/4:452@C #3/4:453@N reasonable false
    37217 
    37218 Created 0 bonds 
    37219 
    37220 > bond #3/4:453@C #3/4:454@N reasonable false
    37221 
    37222 Created 0 bonds 
    37223 
    37224 > bond #3/4:454@C #3/4:455@N reasonable false
    37225 
    37226 Created 0 bonds 
    37227 
    37228 > bond #3/4:455@C #3/4:456@N reasonable false
    37229 
    37230 Created 0 bonds 
    37231 
    37232 > bond #3/4:456@C #3/4:457@N reasonable false
    37233 
    37234 Created 0 bonds 
    37235 
    37236 > bond #3/4:457@C #3/4:458@N reasonable false
    37237 
    37238 Created 0 bonds 
    37239 
    37240 > bond #3/4:458@C #3/4:459@N reasonable false
    37241 
    37242 Created 0 bonds 
    37243 
    37244 > bond #3/4:459@C #3/4:460@N reasonable false
    37245 
    37246 Created 0 bonds 
    37247 
    37248 > bond #3/4:460@C #3/4:461@N reasonable false
    37249 
    37250 Created 0 bonds 
    37251 
    37252 > bond #3/4:461@C #3/4:462@N reasonable false
    37253 
    37254 Created 0 bonds 
    37255 
    37256 > bond #3/4:462@C #3/4:463@N reasonable false
    37257 
    37258 Created 0 bonds 
    37259 
    37260 > bond #3/4:463@C #3/4:464@N reasonable false
    37261 
    37262 Created 0 bonds 
    37263 
    37264 > bond #3/4:464@C #3/4:465@N reasonable false
    37265 
    37266 Created 0 bonds 
    37267 
    37268 > bond #3/4:465@C #3/4:466@N reasonable false
    37269 
    37270 Created 0 bonds 
    37271 
    37272 > bond #3/4:466@C #3/4:467@N reasonable false
    37273 
    37274 Created 0 bonds 
    37275 
    37276 > bond #3/4:467@C #3/4:468@N reasonable false
    37277 
    37278 Created 0 bonds 
    37279 
    37280 > bond #3/4:468@C #3/4:469@N reasonable false
    37281 
    37282 Created 1 bond 
    37283 
    37284 > bond #3/4:479@C #3/4:480@N reasonable false
    37285 
    37286 Created 0 bonds 
    37287 
    37288 > bond #3/4:480@C #3/4:481@N reasonable false
    37289 
    37290 Created 0 bonds 
    37291 
    37292 > bond #3/4:481@C #3/4:482@N reasonable false
    37293 
    37294 Created 0 bonds 
    37295 
    37296 > bond #3/4:482@C #3/4:483@N reasonable false
    37297 
    37298 Created 0 bonds 
    37299 
    37300 > bond #3/4:483@C #3/4:484@N reasonable false
    37301 
    37302 Created 0 bonds 
    37303 
    37304 > bond #3/4:484@C #3/4:485@N reasonable false
    37305 
    37306 Created 0 bonds 
    37307 
    37308 > bond #3/4:485@C #3/4:486@N reasonable false
    37309 
    37310 Created 0 bonds 
    37311 
    37312 > bond #3/4:486@C #3/4:487@N reasonable false
    37313 
    37314 Created 0 bonds 
    37315 
    37316 > bond #3/4:487@C #3/4:488@N reasonable false
    37317 
    37318 Created 0 bonds 
    37319 
    37320 > bond #3/4:488@C #3/4:489@N reasonable false
    37321 
    37322 Created 0 bonds 
    37323 
    37324 > bond #3/4:489@C #3/4:490@N reasonable false
    37325 
    37326 Created 0 bonds 
    37327 
    37328 > bond #3/4:490@C #3/4:491@N reasonable false
    37329 
    37330 Created 0 bonds 
    37331 
    37332 > bond #3/4:491@C #3/4:492@N reasonable false
    37333 
    37334 Created 0 bonds 
    37335 
    37336 > bond #3/4:492@C #3/4:493@N reasonable false
    37337 
    37338 Created 0 bonds 
    37339 
    37340 > bond #3/4:493@C #3/4:494@N reasonable false
    37341 
    37342 Created 0 bonds 
    37343 
    37344 > bond #3/4:494@C #3/4:495@N reasonable false
    37345 
    37346 Created 0 bonds 
    37347 
    37348 > bond #3/4:495@C #3/4:496@N reasonable false
    37349 
    37350 Created 0 bonds 
    37351 
    37352 > bond #3/4:496@C #3/4:497@N reasonable false
    37353 
    37354 Created 0 bonds 
    37355 
    37356 > bond #3/4:497@C #3/4:498@N reasonable false
    37357 
    37358 Created 0 bonds 
    37359 
    37360 > bond #3/4:498@C #3/4:499@N reasonable false
    37361 
    37362 Created 0 bonds 
    37363 
    37364 > bond #3/4:499@C #3/4:500@N reasonable false
    37365 
    37366 Created 0 bonds 
    37367 
    37368 > bond #3/4:500@C #3/4:501@N reasonable false
    37369 
    37370 Created 0 bonds 
    37371 
    37372 > bond #3/4:501@C #3/4:502@N reasonable false
    37373 
    37374 Created 0 bonds 
    37375 
    37376 > bond #3/4:502@C #3/4:503@N reasonable false
    37377 
    37378 Created 0 bonds 
    37379 
    37380 > bond #3/4:503@C #3/4:504@N reasonable false
    37381 
    37382 Created 0 bonds 
    37383 
    37384 > bond #3/4:504@C #3/4:505@N reasonable false
    37385 
    37386 Created 1 bond 
    37387 
    37388 > bond #3/4:505@C #3/4:506@N reasonable false
    37389 
    37390 Created 0 bonds 
    37391 
    37392 > bond #3/4:506@C #3/4:507@N reasonable false
    37393 
    37394 Created 1 bond 
    37395 
    37396 > bond #3/4:507@C #3/4:508@N reasonable false
    37397 
    37398 Created 0 bonds 
    37399 
    37400 > bond #3/4:508@C #3/4:509@N reasonable false
    37401 
    37402 Created 0 bonds 
    37403 
    37404 > bond #3/4:509@C #3/4:510@N reasonable false
    37405 
    37406 Created 0 bonds 
    37407 
    37408 > bond #3/4:510@C #3/4:511@N reasonable false
    37409 
    37410 Created 1 bond 
    37411 
    37412 > bond #3/4:321@C #3/4:322@N reasonable false
    37413 
    37414 Created 0 bonds 
    37415 
    37416 > bond #3/4:322@C #3/4:323@N reasonable false
    37417 
    37418 Created 0 bonds 
    37419 
    37420 > bond #3/4:323@C #3/4:324@N reasonable false
    37421 
    37422 Created 0 bonds 
    37423 
    37424 > bond #3/4:324@C #3/4:325@N reasonable false
    37425 
    37426 Created 0 bonds 
    37427 
    37428 > bond #3/4:325@C #3/4:326@N reasonable false
    37429 
    37430 Created 0 bonds 
    37431 
    37432 > bond #3/4:326@C #3/4:327@N reasonable false
    37433 
    37434 Created 0 bonds 
    37435 
    37436 > bond #3/4:327@C #3/4:328@N reasonable false
    37437 
    37438 Created 0 bonds 
    37439 
    37440 > bond #3/4:328@C #3/4:329@N reasonable false
    37441 
    37442 Created 0 bonds 
    37443 
    37444 > bond #3/4:329@C #3/4:330@N reasonable false
    37445 
    37446 Created 0 bonds 
    37447 
    37448 > bond #3/4:330@C #3/4:331@N reasonable false
    37449 
    37450 Created 0 bonds 
    37451 
    37452 > bond #3/4:331@C #3/4:332@N reasonable false
    37453 
    37454 Created 0 bonds 
    37455 
    37456 > bond #3/4:332@C #3/4:333@N reasonable false
    37457 
    37458 Created 0 bonds 
    37459 
    37460 > bond #3/4:333@C #3/4:334@N reasonable false
    37461 
    37462 Created 0 bonds 
    37463 
    37464 > bond #3/4:334@C #3/4:335@N reasonable false
    37465 
    37466 Created 0 bonds 
    37467 
    37468 > bond #3/4:335@C #3/4:336@N reasonable false
    37469 
    37470 Created 0 bonds 
    37471 
    37472 > bond #3/4:336@C #3/4:337@N reasonable false
    37473 
    37474 Created 0 bonds 
    37475 
    37476 > bond #3/4:337@C #3/4:338@N reasonable false
    37477 
    37478 Created 0 bonds 
    37479 
    37480 > bond #3/4:338@C #3/4:339@N reasonable false
    37481 
    37482 Created 0 bonds 
    37483 
    37484 > bond #3/4:339@C #3/4:340@N reasonable false
    37485 
    37486 Created 0 bonds 
    37487 
    37488 > bond #3/4:340@C #3/4:341@N reasonable false
    37489 
    37490 Created 0 bonds 
    37491 
    37492 > bond #3/4:341@C #3/4:342@N reasonable false
    37493 
    37494 Created 0 bonds 
    37495 
    37496 > bond #3/4:342@C #3/4:343@N reasonable false
    37497 
    37498 Created 0 bonds 
    37499 
    37500 > bond #3/4:343@C #3/4:344@N reasonable false
    37501 
    37502 Created 0 bonds 
    37503 
    37504 > bond #3/4:344@C #3/4:345@N reasonable false
    37505 
    37506 Created 0 bonds 
    37507 
    37508 > bond #3/4:345@C #3/4:346@N reasonable false
    37509 
    37510 Created 0 bonds 
    37511 
    37512 > bond #3/4:346@C #3/4:347@N reasonable false
    37513 
    37514 Created 0 bonds 
    37515 
    37516 > bond #3/4:347@C #3/4:348@N reasonable false
    37517 
    37518 Created 0 bonds 
    37519 
    37520 > bond #3/4:348@C #3/4:349@N reasonable false
    37521 
    37522 Created 0 bonds 
    37523 
    37524 > bond #3/4:349@C #3/4:350@N reasonable false
    37525 
    37526 Created 0 bonds 
    37527 
    37528 > bond #3/4:350@C #3/4:351@N reasonable false
    37529 
    37530 Created 0 bonds 
    37531 
    37532 > bond #3/4:351@C #3/4:352@N reasonable false
    37533 
    37534 Created 0 bonds 
    37535 
    37536 > bond #3/4:352@C #3/4:353@N reasonable false
    37537 
    37538 Created 1 bond 
    37539 
    37540 > bond #3/4:76@C #3/4:77@N reasonable false
    37541 
    37542 Created 0 bonds 
    37543 
    37544 > bond #3/4:77@C #3/4:78@N reasonable false
    37545 
    37546 Created 0 bonds 
    37547 
    37548 > bond #3/4:78@C #3/4:79@N reasonable false
    37549 
    37550 Created 0 bonds 
    37551 
    37552 > bond #3/4:79@C #3/4:80@N reasonable false
    37553 
    37554 Created 1 bond 
    37555 
    37556 > bond #3/4:389@C #3/4:390@N reasonable false
    37557 
    37558 Created 0 bonds 
    37559 
    37560 > bond #3/4:390@C #3/4:391@N reasonable false
    37561 
    37562 Created 0 bonds 
    37563 
    37564 > bond #3/4:391@C #3/4:392@N reasonable false
    37565 
    37566 Created 0 bonds 
    37567 
    37568 > bond #3/4:392@C #3/4:393@N reasonable false
    37569 
    37570 Created 0 bonds 
    37571 
    37572 > bond #3/4:393@C #3/4:394@N reasonable false
    37573 
    37574 Created 0 bonds 
    37575 
    37576 > bond #3/4:394@C #3/4:395@N reasonable false
    37577 
    37578 Created 0 bonds 
    37579 
    37580 > bond #3/4:395@C #3/4:396@N reasonable false
    37581 
    37582 Created 0 bonds 
    37583 
    37584 > bond #3/4:396@C #3/4:397@N reasonable false
    37585 
    37586 Created 0 bonds 
    37587 
    37588 > bond #3/4:397@C #3/4:398@N reasonable false
    37589 
    37590 Created 0 bonds 
    37591 
    37592 > bond #3/4:398@C #3/4:399@N reasonable false
    37593 
    37594 Created 1 bond 
    37595 
    37596 > bond #3/4:427@C #3/4:428@N reasonable false
    37597 
    37598 Created 0 bonds 
    37599 
    37600 > bond #3/4:428@C #3/4:429@N reasonable false
    37601 
    37602 Created 0 bonds 
    37603 
    37604 > bond #3/4:429@C #3/4:430@N reasonable false
    37605 
    37606 Created 0 bonds 
    37607 
    37608 > bond #3/4:430@C #3/4:431@N reasonable false
    37609 
    37610 Created 0 bonds 
    37611 
    37612 > bond #3/4:431@C #3/4:432@N reasonable false
    37613 
    37614 Created 0 bonds 
    37615 
    37616 > bond #3/4:126@C #3/4:127@N reasonable false
    37617 
    37618 Created 0 bonds 
    37619 
    37620 > bond #3/4:127@C #3/4:128@N reasonable false
    37621 
    37622 Created 0 bonds 
    37623 
    37624 > bond #3/4:128@C #3/4:129@N reasonable false
    37625 
    37626 Created 0 bonds 
    37627 
    37628 > bond #3/4:129@C #3/4:130@N reasonable false
    37629 
    37630 Created 0 bonds 
    37631 
    37632 > bond #3/4:130@C #3/4:131@N reasonable false
    37633 
    37634 Created 0 bonds 
    37635 
    37636 > bond #3/4:131@C #3/4:132@N reasonable false
    37637 
    37638 Created 0 bonds 
    37639 
    37640 > bond #3/4:132@C #3/4:133@N reasonable false
    37641 
    37642 Created 0 bonds 
    37643 
    37644 > bond #3/4:133@C #3/4:134@N reasonable false
    37645 
    37646 Created 0 bonds 
    37647 
    37648 > bond #3/4:134@C #3/4:135@N reasonable false
    37649 
    37650 Created 0 bonds 
    37651 
    37652 > bond #3/4:135@C #3/4:136@N reasonable false
    37653 
    37654 Created 0 bonds 
    37655 
    37656 > bond #3/4:136@C #3/4:137@N reasonable false
    37657 
    37658 Created 0 bonds 
    37659 
    37660 > bond #3/4:137@C #3/4:138@N reasonable false
    37661 
    37662 Created 0 bonds 
    37663 
    37664 > bond #3/4:138@C #3/4:139@N reasonable false
    37665 
    37666 Created 0 bonds 
    37667 
    37668 > bond #3/4:139@C #3/4:140@N reasonable false
    37669 
    37670 Created 0 bonds 
    37671 
    37672 > bond #3/4:140@C #3/4:141@N reasonable false
    37673 
    37674 Created 0 bonds 
    37675 
    37676 > bond #3/4:141@C #3/4:142@N reasonable false
    37677 
    37678 Created 0 bonds 
    37679 
    37680 > bond #3/4:142@C #3/4:143@N reasonable false
    37681 
    37682 Created 0 bonds 
    37683 
    37684 > bond #3/4:143@C #3/4:144@N reasonable false
    37685 
    37686 Created 1 bond 
    37687 
    37688 > bond #3/4:181@C #3/4:182@N reasonable false
    37689 
    37690 Created 0 bonds 
    37691 
    37692 > bond #3/4:182@C #3/4:183@N reasonable false
    37693 
    37694 Created 0 bonds 
    37695 
    37696 > bond #3/4:183@C #3/4:184@N reasonable false
    37697 
    37698 Created 0 bonds 
    37699 
    37700 > bond #3/4:184@C #3/4:185@N reasonable false
    37701 
    37702 Created 0 bonds 
    37703 
    37704 > bond #3/4:185@C #3/4:186@N reasonable false
    37705 
    37706 Created 0 bonds 
    37707 
    37708 > bond #3/4:186@C #3/4:187@N reasonable false
    37709 
    37710 Created 0 bonds 
    37711 
    37712 > bond #3/4:187@C #3/4:188@N reasonable false
    37713 
    37714 Created 0 bonds 
    37715 
    37716 > bond #3/4:188@C #3/4:189@N reasonable false
    37717 
    37718 Created 0 bonds 
    37719 
    37720 > bond #3/4:189@C #3/4:190@N reasonable false
    37721 
    37722 Created 0 bonds 
    37723 
    37724 > bond #3/4:190@C #3/4:191@N reasonable false
    37725 
    37726 Created 0 bonds 
    37727 
    37728 > bond #3/4:191@C #3/4:192@N reasonable false
    37729 
    37730 Created 0 bonds 
    37731 
    37732 > bond #3/4:192@C #3/4:193@N reasonable false
    37733 
    37734 Created 0 bonds 
    37735 
    37736 > bond #3/4:193@C #3/4:194@N reasonable false
    37737 
    37738 Created 0 bonds 
    37739 
    37740 > bond #3/4:194@C #3/4:195@N reasonable false
    37741 
    37742 Created 0 bonds 
    37743 
    37744 > bond #3/4:195@C #3/4:196@N reasonable false
    37745 
    37746 Created 0 bonds 
    37747 
    37748 > bond #3/4:196@C #3/4:197@N reasonable false
    37749 
    37750 Created 0 bonds 
    37751 
    37752 > bond #3/4:197@C #3/4:198@N reasonable false
    37753 
    37754 Created 0 bonds 
    37755 
    37756 > bond #3/4:57@C #3/4:58@N reasonable false
    37757 
    37758 Created 0 bonds 
    37759 
    37760 > bond #3/4:58@C #3/4:59@N reasonable false
    37761 
    37762 Created 0 bonds 
    37763 
    37764 > bond #3/4:59@C #3/4:60@N reasonable false
    37765 
    37766 Created 0 bonds 
    37767 
    37768 > bond #3/4:60@C #3/4:61@N reasonable false
    37769 
    37770 Created 0 bonds 
    37771 
    37772 > bond #3/4:61@C #3/4:62@N reasonable false
    37773 
    37774 Created 0 bonds 
    37775 
    37776 > bond #3/4:62@C #3/4:63@N reasonable false
    37777 
    37778 Created 0 bonds 
    37779 
    37780 > bond #3/4:63@C #3/4:64@N reasonable false
    37781 
    37782 Created 0 bonds 
    37783 
    37784 > bond #3/4:64@C #3/4:65@N reasonable false
    37785 
    37786 Created 0 bonds 
    37787 
    37788 > bond #3/4:65@C #3/4:66@N reasonable false
    37789 
    37790 Created 0 bonds 
    37791 
    37792 > bond #3/4:66@C #3/4:67@N reasonable false
    37793 
    37794 Created 0 bonds 
    37795 
    37796 > bond #3/4:67@C #3/4:68@N reasonable false
    37797 
    37798 Created 0 bonds 
    37799 
    37800 > bond #3/4:68@C #3/4:69@N reasonable false
    37801 
    37802 Created 0 bonds 
    37803 
    37804 > bond #3/4:69@C #3/4:70@N reasonable false
    37805 
    37806 Created 0 bonds 
    37807 
    37808 > bond #3/4:70@C #3/4:71@N reasonable false
    37809 
    37810 Created 1 bond 
    37811 
    37812 > bond #3/4:476@C #3/4:477@N reasonable false
    37813 
    37814 Created 0 bonds 
    37815 
    37816 > bond #3/4:477@C #3/4:478@N reasonable false
    37817 
    37818 Created 0 bonds 
    37819 
    37820 > bond #3/4:478@C #3/4:479@N reasonable false
    37821 
    37822 Created 1 bond 
    37823 
    37824 > bond #3/4:381@C #3/4:382@N reasonable false
    37825 
    37826 Created 0 bonds 
    37827 
    37828 > bond #3/4:382@C #3/4:383@N reasonable false
    37829 
    37830 Created 0 bonds 
    37831 
    37832 > bond #3/4:383@C #3/4:384@N reasonable false
    37833 
    37834 Created 0 bonds 
    37835 
    37836 > bond #3/4:356@C #3/4:357@N reasonable false
    37837 
    37838 Created 0 bonds 
    37839 
    37840 > bond #3/4:357@C #3/4:358@N reasonable false
    37841 
    37842 Created 0 bonds 
    37843 
    37844 > bond #3/4:358@C #3/4:359@N reasonable false
    37845 
    37846 Created 0 bonds 
    37847 
    37848 > bond #3/4:359@C #3/4:360@N reasonable false
    37849 
    37850 Created 0 bonds 
    37851 
    37852 > bond #3/4:360@C #3/4:361@N reasonable false
    37853 
    37854 Created 0 bonds 
    37855 
    37856 > bond #3/4:361@C #3/4:362@N reasonable false
    37857 
    37858 Created 0 bonds 
    37859 
    37860 > bond #3/4:362@C #3/4:363@N reasonable false
    37861 
    37862 Created 0 bonds 
    37863 
    37864 > bond #3/4:363@C #3/4:364@N reasonable false
    37865 
    37866 Created 0 bonds 
    37867 
    37868 > bond #3/4:364@C #3/4:365@N reasonable false
    37869 
    37870 Created 0 bonds 
    37871 
    37872 > bond #3/4:365@C #3/4:366@N reasonable false
    37873 
    37874 Created 0 bonds 
    37875 
    37876 > bond #3/4:366@C #3/4:367@N reasonable false
    37877 
    37878 Created 0 bonds 
    37879 
    37880 > bond #3/4:367@C #3/4:368@N reasonable false
    37881 
    37882 Created 0 bonds 
    37883 
    37884 > bond #3/4:368@C #3/4:369@N reasonable false
    37885 
    37886 Created 0 bonds 
    37887 
    37888 > bond #3/4:369@C #3/4:370@N reasonable false
    37889 
    37890 Created 0 bonds 
    37891 
    37892 > bond #3/4:370@C #3/4:371@N reasonable false
    37893 
    37894 Created 0 bonds 
    37895 
    37896 > bond #3/4:371@C #3/4:372@N reasonable false
    37897 
    37898 Created 0 bonds 
    37899 
    37900 > bond #3/4:372@C #3/4:373@N reasonable false
    37901 
    37902 Created 0 bonds 
    37903 
    37904 > bond #3/4:373@C #3/4:374@N reasonable false
    37905 
    37906 Created 0 bonds 
    37907 
    37908 > bond #3/4:374@C #3/4:375@N reasonable false
    37909 
    37910 Created 0 bonds 
    37911 
    37912 > bond #3/4:375@C #3/4:376@N reasonable false
    37913 
    37914 Created 0 bonds 
    37915 
    37916 > bond #3/4:376@C #3/4:377@N reasonable false
    37917 
    37918 Created 0 bonds 
    37919 
    37920 > bond #3/4:377@C #3/4:378@N reasonable false
    37921 
    37922 Created 0 bonds 
    37923 
    37924 > bond #3/4:378@C #3/4:379@N reasonable false
    37925 
    37926 Created 0 bonds 
    37927 
    37928 > bond #3/4:379@C #3/4:380@N reasonable false
    37929 
    37930 Created 1 bond 
    37931 
    37932 > bond #3/4:71@C #3/4:72@N reasonable false
    37933 
    37934 Created 0 bonds 
    37935 
    37936 > bond #3/4:72@C #3/4:73@N reasonable false
    37937 
    37938 Created 0 bonds 
    37939 
    37940 > bond #3/4:73@C #3/4:74@N reasonable false
    37941 
    37942 Created 0 bonds 
    37943 
    37944 > bond #3/4:74@C #3/4:75@N reasonable false
    37945 
    37946 Created 0 bonds 
    37947 
    37948 > bond #3/4:75@C #3/4:76@N reasonable false
    37949 
    37950 Created 1 bond 
    37951 
    37952 > bond #3/4:524@C #3/4:525@N reasonable false
    37953 
    37954 Created 0 bonds 
    37955 
    37956 > bond #3/4:525@C #3/4:526@N reasonable false
    37957 
    37958 Created 0 bonds 
    37959 
    37960 > bond #3/4:304@C #3/4:305@N reasonable false
    37961 
    37962 Created 0 bonds 
    37963 
    37964 > bond #3/4:305@C #3/4:306@N reasonable false
    37965 
    37966 Created 0 bonds 
    37967 
    37968 > swapaa #3/4:25 TYR
    37969 
    37970 Using Dunbrack library 
    37971 mutadedModel #3/4 PHE 25: phi none, psi 97.8 trans 
    37972 Applying TYR rotamer (chi angles: -174.2 21.0) to mutadedModel #3/4 TYR 25 
    37973 
    37974 > color #3/4:25 yellow
    37975 
    37976 > swapaa #3/4:27 TYR
    37977 
    37978 Using Dunbrack library 
    37979 mutadedModel #3/4 ARG 27: phi -85.4, psi 14.2 trans 
    37980 Applying TYR rotamer (chi angles: -176.0 -12.7) to mutadedModel #3/4 TYR 27 
    37981 
    37982 > color #3/4:27 yellow
    37983 
    37984 > swapaa #3/4:28 LYS
    37985 
    37986 Using Dunbrack library 
    37987 mutadedModel #3/4 ASP 28: phi -39.4, psi 79.7 trans 
    37988 Applying LYS rotamer (chi angles: -66.5 -178.0 -177.3 -64.6) to mutadedModel
    37989 #3/4 LYS 28 
    37990 
    37991 > color #3/4:28 yellow
    37992 
    37993 > swapaa #3/4:30 GLY
    37994 
    37995 Using Dunbrack library 
    37996 Swapping mutadedModel #3/4 PRO 30 to GLY 
    37997 
    37998 > color #3/4:30 yellow
    37999 
    38000 > swapaa #3/4:31 GLN
    38001 
    38002 Using Dunbrack library 
    38003 mutadedModel #3/4 LEU 31: phi -82.0, psi -5.5 trans 
    38004 Applying GLN rotamer (chi angles: 70.5 -84.6 179.6) to mutadedModel #3/4 GLN
    38005 31 
    38006 
    38007 > color #3/4:31 yellow
    38008 
    38009 > swapaa #3/4:32 THR
    38010 
    38011 Using Dunbrack library 
    38012 mutadedModel #3/4 ALA 32: phi -73.7, psi -20.3 trans 
    38013 Applying THR rotamer (chi angles: -166.9) to mutadedModel #3/4 THR 32 
    38014 
    38015 > color #3/4:32 yellow
    38016 
    38017 > swapaa #3/4:33 PRO
    38018 
    38019 Using Dunbrack library 
    38020 mutadedModel #3/4 SER 33: phi -90.9, psi -174.9 trans 
    38021 Applying PRO rotamer (chi angles: -23.8 35.4) to mutadedModel #3/4 PRO 33 
    38022 
    38023 > color #3/4:33 yellow
    38024 
    38025 > swapaa #3/4:34 LEU
    38026 
    38027 Using Dunbrack library 
    38028 mutadedModel #3/4 MET 34: phi -73.1, psi 14.8 trans 
    38029 Applying LEU rotamer (chi angles: -64.8 175.2) to mutadedModel #3/4 LEU 34 
    38030 
    38031 > color #3/4:34 yellow
    38032 
    38033 > swapaa #3/4:35 SER
    38034 
    38035 Using Dunbrack library 
    38036 mutadedModel #3/4 THR 35: phi -96.9, psi -21.5 trans 
    38037 Applying SER rotamer (chi angles: 64.1) to mutadedModel #3/4 SER 35 
    38038 
    38039 > color #3/4:35 yellow
    38040 
    38041 > swapaa #3/4:36 GLN
    38042 
    38043 Using Dunbrack library 
    38044 mutadedModel #3/4 ASN 36: phi -99.6, psi 155.3 trans 
    38045 Applying GLN rotamer (chi angles: -59.5 -63.5 -110.4) to mutadedModel #3/4 GLN
    38046 36 
    38047 
    38048 > color #3/4:36 yellow
    38049 
    38050 > swapaa #3/4:38 PHE
    38051 
    38052 Using Dunbrack library 
    38053 mutadedModel #3/4 ALA 38: phi -138.0, psi 18.6 cis 
    38054 Applying PHE rotamer (chi angles: -62.2 101.4) to mutadedModel #3/4 PHE 38 
    38055 
    38056 > color #3/4:38 yellow
    38057 
    38058 > swapaa #3/4:39 GLY
    38059 
    38060 Using Dunbrack library 
    38061 Swapping mutadedModel #3/4 SER 39 to GLY 
    38062 
    38063 > color #3/4:39 yellow
    38064 
    38065 > swapaa #3/4:40 GLY
    38066 
    38067 Using Dunbrack library 
    38068 Swapping mutadedModel #3/4 VAL 40 to GLY 
    38069 
    38070 > color #3/4:40 yellow
    38071 
    38072 > swapaa #3/4:57 ALA
    38073 
    38074 Using Dunbrack library 
    38075 Swapping mutadedModel #3/4 GLY 57 to ALA 
    38076 
    38077 > color #3/4:57 yellow
    38078 
    38079 > swapaa #3/4:58 LYS
    38080 
    38081 Using Dunbrack library 
    38082 mutadedModel #3/4 GLY 58: phi 102.5, psi -100.2 cis 
    38083 Applying LYS rotamer (chi angles: -175.1 -178.4 -70.5 -175.7) to mutadedModel
    38084 #3/4 LYS 58 
    38085 
    38086 > color #3/4:58 yellow
    38087 
    38088 > swapaa #3/4:59 LYS
    38089 
    38090 Using Dunbrack library 
    38091 mutadedModel #3/4 GLY 59: phi -114.5, psi 146.2 trans 
    38092 Applying LYS rotamer (chi angles: -176.5 177.4 -176.1 -65.3) to mutadedModel
    38093 #3/4 LYS 59 
    38094 
    38095 > color #3/4:59 yellow
    38096 
    38097 > swapaa #3/4:60 VAL
    38098 
    38099 Using Dunbrack library 
    38100 mutadedModel #3/4 ILE 60: phi -67.6, psi 115.9 trans 
    38101 Applying VAL rotamer (chi angles: 176.1) to mutadedModel #3/4 VAL 60 
    38102 
    38103 > color #3/4:60 yellow
    38104 
    38105 > swapaa #3/4:61 GLU
    38106 
    38107 Using Dunbrack library 
    38108 mutadedModel #3/4 SER 61: phi -92.3, psi 161.9 trans 
    38109 Applying GLU rotamer (chi angles: -175.4 66.5 -76.0) to mutadedModel #3/4 GLU
    38110 61 
    38111 
    38112 > color #3/4:61 yellow
    38113 
    38114 > swapaa #3/4:62 ILE
    38115 
    38116 Using Dunbrack library 
    38117 mutadedModel #3/4 VAL 62: phi -136.5, psi 136.2 trans 
    38118 Applying ILE rotamer (chi angles: 58.8 172.1) to mutadedModel #3/4 ILE 62 
    38119 
    38120 > color #3/4:62 yellow
    38121 
    38122 > swapaa #3/4:63 THR
    38123 
    38124 Using Dunbrack library 
    38125 mutadedModel #3/4 VAL 63: phi -135.6, psi 145.5 trans 
    38126 Applying THR rotamer (chi angles: 62.9) to mutadedModel #3/4 THR 63 
    38127 
    38128 > color #3/4:63 yellow
    38129 
    38130 > swapaa #3/4:64 LYS
    38131 
    38132 Using Dunbrack library 
    38133 mutadedModel #3/4 GLU 64: phi -107.1, psi 118.0 trans 
    38134 Applying LYS rotamer (chi angles: 62.9 85.9 -178.0 62.2) to mutadedModel #3/4
    38135 LYS 64 
    38136 
    38137 > color #3/4:64 yellow
    38138 
    38139 > swapaa #3/4:66 HIS
    38140 
    38141 Using Dunbrack library 
    38142 mutadedModel #3/4 PRO 66: phi -57.3, psi -20.8 trans 
    38143 Applying HIS rotamer (chi angles: 67.6 -78.2) to mutadedModel #3/4 HIS 66 
    38144 
    38145 > color #3/4:66 yellow
    38146 
    38147 > swapaa #3/4:67 ASN
    38148 
    38149 Using Dunbrack library 
    38150 mutadedModel #3/4 LEU 67: phi -91.2, psi -1.9 trans 
    38151 Applying ASN rotamer (chi angles: 65.2 -4.5) to mutadedModel #3/4 ASN 67 
    38152 
    38153 > color #3/4:67 yellow
    38154 
    38155 > swapaa #3/4:71 VAL
    38156 
    38157 Using Dunbrack library 
    38158 mutadedModel #3/4 LEU 71: phi 46.2, psi 163.2 cis 
    38159 Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/4 VAL 71 
    38160 
    38161 > color #3/4:71 yellow
    38162 
    38163 > swapaa #3/4:72 ILE
    38164 
    38165 Using Dunbrack library 
    38166 mutadedModel #3/4 TYR 72: phi -106.5, psi -95.9 trans 
    38167 Applying ILE rotamer (chi angles: -66.0 169.1) to mutadedModel #3/4 ILE 72 
    38168 
    38169 > color #3/4:72 yellow
    38170 
    38171 > swapaa #3/4:73 THR
    38172 
    38173 Using Dunbrack library 
    38174 mutadedModel #3/4 VAL 73: phi 170.9, psi 117.3 trans 
    38175 Applying THR rotamer (chi angles: 61.4) to mutadedModel #3/4 THR 73 
    38176 
    38177 > color #3/4:73 yellow
    38178 
    38179 > swapaa #3/4:74 HIS
    38180 
    38181 Using Dunbrack library 
    38182 mutadedModel #3/4 ARG 74: phi -121.0, psi 86.8 trans 
    38183 Applying HIS rotamer (chi angles: -175.7 -168.0) to mutadedModel #3/4 HIS 74 
    38184 
    38185 > color #3/4:74 yellow
    38186 
    38187 > swapaa #3/4:75 ASN
    38188 
    38189 Using Dunbrack library 
    38190 mutadedModel #3/4 LEU 75: phi -122.3, psi -3.7 trans 
    38191 Applying ASN rotamer (chi angles: 63.8 3.5) to mutadedModel #3/4 ASN 75 
    38192 
    38193 > color #3/4:75 yellow
    38194 
    38195 > swapaa #3/4:76 LEU
    38196 
    38197 Using Dunbrack library 
    38198 mutadedModel #3/4 VAL 76: phi 96.2, psi 111.9 trans 
    38199 Applying LEU rotamer (chi angles: -64.2 174.4) to mutadedModel #3/4 LEU 76 
    38200 
    38201 > color #3/4:76 yellow
    38202 
    38203 > swapaa #3/4:77 GLY
    38204 
    38205 Using Dunbrack library 
    38206 Swapping mutadedModel #3/4 GLU 77 to GLY 
    38207 
    38208 > color #3/4:77 yellow
    38209 
    38210 > swapaa #3/4:79 PRO
    38211 
    38212 Using Dunbrack library 
    38213 mutadedModel #3/4 GLY 79: phi -94.1, psi -99.3 trans 
    38214 Applying PRO rotamer (chi angles: 27.2 -34.5) to mutadedModel #3/4 PRO 79 
    38215 
    38216 > color #3/4:79 yellow
    38217 
    38218 > swapaa #3/4:80 SER
    38219 
    38220 Using Dunbrack library 
    38221 mutadedModel #3/4 THR 80: phi -15.9, psi 129.3 trans 
    38222 Applying SER rotamer (chi angles: 176.1) to mutadedModel #3/4 SER 80 
    38223 
    38224 > color #3/4:80 yellow
    38225 
    38226 > swapaa #3/4:81 VAL
    38227 
    38228 Using Dunbrack library 
    38229 mutadedModel #3/4 ALA 81: phi -85.9, psi 138.5 trans 
    38230 Applying VAL rotamer (chi angles: -62.3) to mutadedModel #3/4 VAL 81 
    38231 
    38232 > color #3/4:81 yellow
    38233 
    38234 > swapaa #3/4:82 SER
    38235 
    38236 Using Dunbrack library 
    38237 mutadedModel #3/4 ALA 82: phi -105.1, psi 116.8 trans 
    38238 Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/4 SER 82 
    38239 
    38240 > color #3/4:82 yellow
    38241 
    38242 > swapaa #3/4:85 ALA
    38243 
    38244 Using Dunbrack library 
    38245 Swapping mutadedModel #3/4 ASP 85 to ALA 
    38246 
    38247 > color #3/4:85 yellow
    38248 
    38249 > swapaa #3/4:87 ILE
    38250 
    38251 Using Dunbrack library 
    38252 mutadedModel #3/4 ALA 87: phi 52.3, psi 104.8 cis 
    38253 Applying ILE rotamer (chi angles: 61.9 171.0) to mutadedModel #3/4 ILE 87 
    38254 
    38255 > color #3/4:87 yellow
    38256 
    38257 > swapaa #3/4:88 LEU
    38258 
    38259 Using Dunbrack library 
    38260 mutadedModel #3/4 TYR 88: phi -90.9, psi 105.0 trans 
    38261 Applying LEU rotamer (chi angles: -164.6 165.7) to mutadedModel #3/4 LEU 88 
    38262 
    38263 > color #3/4:88 yellow
    38264 
    38265 > swapaa #3/4:91 PRO
    38266 
    38267 Using Dunbrack library 
    38268 mutadedModel #3/4 VAL 91: phi -79.6, psi -50.9 trans 
    38269 Applying PRO rotamer (chi angles: -26.8 37.2) to mutadedModel #3/4 PRO 91 
    38270 
    38271 > color #3/4:91 yellow
    38272 
    38273 > swapaa #3/4:92 ALA
    38274 
    38275 Using Dunbrack library 
    38276 Swapping mutadedModel #3/4 GLY 92 to ALA 
    38277 
    38278 > color #3/4:92 yellow
    38279 
    38280 > swapaa #3/4:93 TYR
    38281 
    38282 Using Dunbrack library 
    38283 mutadedModel #3/4 GLN 93: phi -103.5, psi 33.2 trans 
    38284 Applying TYR rotamer (chi angles: -64.4 77.6) to mutadedModel #3/4 TYR 93 
    38285 
    38286 > color #3/4:93 yellow
    38287 
    38288 > swapaa #3/4:94 ASP
    38289 
    38290 Using Dunbrack library 
    38291 mutadedModel #3/4 SER 94: phi -87.6, psi 179.4 trans 
    38292 Applying ASP rotamer (chi angles: -68.4 72.6) to mutadedModel #3/4 ASP 94 
    38293 
    38294 > color #3/4:94 yellow
    38295 
    38296 > swapaa #3/4:97 SER
    38297 
    38298 Using Dunbrack library 
    38299 mutadedModel #3/4 ASP 97: phi -68.8, psi -8.6 trans 
    38300 Applying SER rotamer (chi angles: 66.9) to mutadedModel #3/4 SER 97 
    38301 
    38302 > color #3/4:97 yellow
    38303 
    38304 > swapaa #3/4:98 ALA
    38305 
    38306 Using Dunbrack library 
    38307 Swapping mutadedModel #3/4 THR 98 to ALA 
    38308 
    38309 > color #3/4:98 yellow
    38310 
    38311 > swapaa #3/4:100 GLY
    38312 
    38313 Using Dunbrack library 
    38314 Swapping mutadedModel #3/4 ARG 100 to GLY 
    38315 
    38316 > color #3/4:100 yellow
    38317 
    38318 > swapaa #3/4:101 ALA
    38319 
    38320 Using Dunbrack library 
    38321 Swapping mutadedModel #3/4 CYS 101 to ALA 
    38322 
    38323 > color #3/4:101 yellow
    38324 
    38325 > swapaa #3/4:102 GLY
    38326 
    38327 Using Dunbrack library 
    38328 Swapping mutadedModel #3/4 ALA 102 to GLY 
    38329 
    38330 > color #3/4:102 yellow
    38331 
    38332 > swapaa #3/4:103 ALA
    38333 
    38334 Using Dunbrack library 
    38335 Swapping mutadedModel #3/4 PHE 103 to ALA 
    38336 
    38337 > color #3/4:103 yellow
    38338 
    38339 > swapaa #3/4:106 HIS
    38340 
    38341 Using Dunbrack library 
    38342 mutadedModel #3/4 ARG 106: phi -56.7, psi -42.7 trans 
    38343 Applying HIS rotamer (chi angles: 66.5 125.6) to mutadedModel #3/4 HIS 106 
    38344 
    38345 > color #3/4:106 yellow
    38346 
    38347 > swapaa #3/4:107 LEU
    38348 
    38349 Using Dunbrack library 
    38350 mutadedModel #3/4 GLN 107: phi -71.7, psi -33.0 trans 
    38351 Applying LEU rotamer (chi angles: -174.2 -78.7) to mutadedModel #3/4 LEU 107 
    38352 
    38353 > color #3/4:107 yellow
    38354 
    38355 > swapaa #3/4:108 ALA
    38356 
    38357 Using Dunbrack library 
    38358 Swapping mutadedModel #3/4 PRO 108 to ALA 
    38359 
    38360 > color #3/4:108 yellow
    38361 
    38362 > swapaa #3/4:110 THR
    38363 
    38364 Using Dunbrack library 
    38365 mutadedModel #3/4 GLU 110: phi -84.8, psi -26.8 trans 
    38366 Applying THR rotamer (chi angles: -169.0) to mutadedModel #3/4 THR 110 
    38367 
    38368 > color #3/4:110 yellow
    38369 
    38370 > swapaa #3/4:112 SER
    38371 
    38372 Using Dunbrack library 
    38373 mutadedModel #3/4 PRO 112: phi -75.4, psi 141.6 trans 
    38374 Applying SER rotamer (chi angles: -64.1) to mutadedModel #3/4 SER 112 
    38375 
    38376 > color #3/4:112 yellow
    38377 
    38378 > swapaa #3/4:114 TYR
    38379 
    38380 Using Dunbrack library 
    38381 mutadedModel #3/4 GLN 114: phi -85.5, psi -15.3 trans 
    38382 Applying TYR rotamer (chi angles: -67.4 104.3) to mutadedModel #3/4 TYR 114 
    38383 
    38384 > color #3/4:114 yellow
    38385 
    38386 > swapaa #3/4:118 LEU
    38387 
    38388 Using Dunbrack library 
    38389 mutadedModel #3/4 GLU 118: phi -75.0, psi -34.7 trans 
    38390 Applying LEU rotamer (chi angles: -174.2 -78.7) to mutadedModel #3/4 LEU 118 
    38391 
    38392 > color #3/4:118 yellow
    38393 
    38394 > swapaa #3/4:120 GLN
    38395 
    38396 Using Dunbrack library 
    38397 mutadedModel #3/4 LEU 120: phi -26.2, psi -22.6 trans 
    38398 Applying GLN rotamer (chi angles: -175.3 65.4 104.6) to mutadedModel #3/4 GLN
    38399 120 
    38400 
    38401 > color #3/4:120 yellow
    38402 
    38403 > swapaa #3/4:122 ASP
    38404 
    38405 Using Dunbrack library 
    38406 mutadedModel #3/4 VAL 122: phi -83.9, psi 16.8 trans 
    38407 Applying ASP rotamer (chi angles: -67.9 -25.9) to mutadedModel #3/4 ASP 122 
    38408 
    38409 > color #3/4:122 yellow
    38410 
    38411 > swapaa #3/4:124 ASN
    38412 
    38413 Using Dunbrack library 
    38414 mutadedModel #3/4 ILE 124: phi -86.0, psi -23.6 trans 
    38415 Applying ASN rotamer (chi angles: -68.9 -30.6) to mutadedModel #3/4 ASN 124 
    38416 
    38417 > color #3/4:124 yellow
    38418 
    38419 > swapaa #3/4:125 ILE
    38420 
    38421 Using Dunbrack library 
    38422 mutadedModel #3/4 ARG 125: phi -89.4, psi -76.9 trans 
    38423 Applying ILE rotamer (chi angles: 61.9 171.0) to mutadedModel #3/4 ILE 125 
    38424 
    38425 > color #3/4:125 yellow
    38426 
    38427 > swapaa #3/4:126 ARG
    38428 
    38429 Using Dunbrack library 
    38430 mutadedModel #3/4 GLY 126: phi -157.5, psi 129.7 trans 
    38431 Applying ARG rotamer (chi angles: 54.1 81.4 -95.3 165.3) to mutadedModel #3/4
    38432 ARG 126 
    38433 
    38434 > color #3/4:126 yellow
    38435 
    38436 > swapaa #3/4:128 VAL
    38437 
    38438 Using Dunbrack library 
    38439 mutadedModel #3/4 ILE 128: phi -96.0, psi -10.4 trans 
    38440 Applying VAL rotamer (chi angles: -59.6) to mutadedModel #3/4 VAL 128 
    38441 
    38442 > color #3/4:128 yellow
    38443 
    38444 > swapaa #3/4:132 GLN
    38445 
    38446 Using Dunbrack library 
    38447 mutadedModel #3/4 LEU 132: phi -110.0, psi 137.9 trans 
    38448 Applying GLN rotamer (chi angles: 179.0 69.5 53.5) to mutadedModel #3/4 GLN
    38449 132 
    38450 
    38451 > color #3/4:132 yellow
    38452 
    38453 > swapaa #3/4:134 HIS
    38454 
    38455 Using Dunbrack library 
    38456 mutadedModel #3/4 GLN 134: phi -90.9, psi 131.5 trans 
    38457 Applying HIS rotamer (chi angles: 65.6 -44.9) to mutadedModel #3/4 HIS 134 
    38458 
    38459 > color #3/4:134 yellow
    38460 
    38461 > swapaa #3/4:135 PHE
    38462 
    38463 Using Dunbrack library 
    38464 mutadedModel #3/4 ARG 135: phi -107.0, psi -161.3 trans 
    38465 Applying PHE rotamer (chi angles: -178.2 51.9) to mutadedModel #3/4 PHE 135 
    38466 
    38467 > color #3/4:135 yellow
    38468 
    38469 > swapaa #3/4:136 GLU
    38470 
    38471 Using Dunbrack library 
    38472 mutadedModel #3/4 LYS 136: phi -158.4, psi 109.2 trans 
    38473 Applying GLU rotamer (chi angles: -63.9 -179.5 55.9) to mutadedModel #3/4 GLU
    38474 136 
    38475 
    38476 > color #3/4:136 yellow
    38477 
    38478 > swapaa #3/4:137 LYS
    38479 
    38480 Using Dunbrack library 
    38481 mutadedModel #3/4 GLU 137: phi -88.6, psi -91.4 trans 
    38482 Applying LYS rotamer (chi angles: 65.9 176.9 70.7 173.4) to mutadedModel #3/4
    38483 LYS 137 
    38484 
    38485 > color #3/4:137 yellow
    38486 
    38487 > swapaa #3/4:139 LYS
    38488 
    38489 Using Dunbrack library 
    38490 mutadedModel #3/4 PHE 139: phi -98.9, psi 5.0 trans 
    38491 Applying LYS rotamer (chi angles: -177.1 176.6 179.1 180.0) to mutadedModel
    38492 #3/4 LYS 139 
    38493 
    38494 > color #3/4:139 yellow
    38495 
    38496 > swapaa #3/4:140 HIS
    38497 
    38498 Using Dunbrack library 
    38499 mutadedModel #3/4 LYS 140: phi -107.9, psi -15.6 trans 
    38500 Applying HIS rotamer (chi angles: -63.6 -129.1) to mutadedModel #3/4 HIS 140 
    38501 
    38502 > color #3/4:140 yellow
    38503 
    38504 > swapaa #3/4:142 ILE
    38505 
    38506 Using Dunbrack library 
    38507 mutadedModel #3/4 LEU 142: phi -118.1, psi 127.6 trans 
    38508 Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/4 ILE 142 
    38509 
    38510 > color #3/4:142 yellow
    38511 
    38512 > swapaa #3/4:143 GLY
    38513 
    38514 Using Dunbrack library 
    38515 Swapping mutadedModel #3/4 SER 143 to GLY 
    38516 
    38517 > color #3/4:143 yellow
    38518 
    38519 > swapaa #3/4:144 ILE
    38520 
    38521 Using Dunbrack library 
    38522 mutadedModel #3/4 PHE 144: phi -115.5, psi 102.5 trans 
    38523 Applying ILE rotamer (chi angles: -58.4 172.2) to mutadedModel #3/4 ILE 144 
    38524 
    38525 > color #3/4:144 yellow
    38526 
    38527 > swapaa #3/4:145 ARG
    38528 
    38529 Using Dunbrack library 
    38530 mutadedModel #3/4 LEU 145: phi -106.3, psi 127.8 trans 
    38531 Applying ARG rotamer (chi angles: -176.2 178.2 67.2 -172.6) to mutadedModel
    38532 #3/4 ARG 145 
    38533 
    38534 > color #3/4:145 yellow
    38535 
    38536 > swapaa #3/4:146 ILE
    38537 
    38538 Using Dunbrack library 
    38539 mutadedModel #3/4 CYS 146: phi -124.1, psi 131.3 trans 
    38540 Applying ILE rotamer (chi angles: -177.4 70.3) to mutadedModel #3/4 ILE 146 
    38541 
    38542 > color #3/4:146 yellow
    38543 
    38544 > swapaa #3/4:147 ASP
    38545 
    38546 Using Dunbrack library 
    38547 mutadedModel #3/4 THR 147: phi -122.9, psi 152.9 trans 
    38548 Applying ASP rotamer (chi angles: -65.1 -40.1) to mutadedModel #3/4 ASP 147 
    38549 
    38550 > color #3/4:147 yellow
    38551 
    38552 > swapaa #3/4:148 ALA
    38553 
    38554 Using Dunbrack library 
    38555 Swapping mutadedModel #3/4 GLY 148 to ALA 
    38556 
    38557 > color #3/4:148 yellow
    38558 
    38559 > swapaa #3/4:150 ALA
    38560 
    38561 Using Dunbrack library 
    38562 Swapping mutadedModel #3/4 ARG 150 to ALA 
    38563 
    38564 > color #3/4:150 yellow
    38565 
    38566 > swapaa #3/4:151 ASP
    38567 
    38568 Using Dunbrack library 
    38569 mutadedModel #3/4 GLY 151: phi -13.8, psi 14.6 trans 
    38570 Applying ASP rotamer (chi angles: -172.5 -6.2) to mutadedModel #3/4 ASP 151 
    38571 
    38572 > color #3/4:151 yellow
    38573 
    38574 > swapaa #3/4:152 LYS
    38575 
    38576 Using Dunbrack library 
    38577 mutadedModel #3/4 LEU 152: phi 115.6, psi -92.3 trans 
    38578 Applying LYS rotamer (chi angles: -174.2 178.4 -68.9 -68.5) to mutadedModel
    38579 #3/4 LYS 152 
    38580 
    38581 > color #3/4:152 yellow
    38582 
    38583 > swapaa #3/4:153 TRP
    38584 
    38585 Using Dunbrack library 
    38586 mutadedModel #3/4 ASN 153: phi -101.2, psi 4.7 cis 
    38587 Applying TRP rotamer (chi angles: -65.7 -130.0) to mutadedModel #3/4 TRP 153 
    38588 
    38589 > color #3/4:153 yellow
    38590 
    38591 > swapaa #3/4:154 LYS
    38592 
    38593 Using Dunbrack library 
    38594 mutadedModel #3/4 ASP 154: phi 151.5, psi 1.2 trans 
    38595 Applying LYS rotamer (chi angles: -61.1 -66.1 -174.2 -67.0) to mutadedModel
    38596 #3/4 LYS 154 
    38597 
    38598 > color #3/4:154 yellow
    38599 
    38600 > swapaa #3/4:155 SER
    38601 
    38602 Using Dunbrack library 
    38603 mutadedModel #3/4 ALA 155: phi -21.2, psi 51.7 trans 
    38604 Applying SER rotamer (chi angles: -64.2) to mutadedModel #3/4 SER 155 
    38605 
    38606 > color #3/4:155 yellow
    38607 
    38608 > swapaa #3/4:156 ALA
    38609 
    38610 Using Dunbrack library 
    38611 Swapping mutadedModel #3/4 SER 156 to ALA 
    38612 
    38613 > color #3/4:156 yellow
    38614 
    38615 > swapaa #3/4:181 ASN
    38616 
    38617 Using Dunbrack library 
    38618 mutadedModel #3/4 THR 181: phi none, psi 4.9 trans 
    38619 Applying ASN rotamer (chi angles: -77.3 -137.6) to mutadedModel #3/4 ASN 181 
    38620 
    38621 > color #3/4:181 yellow
    38622 
    38623 > swapaa #3/4:182 LEU
    38624 
    38625 Using Dunbrack library 
    38626 mutadedModel #3/4 ILE 182: phi -91.0, psi -51.5 trans 
    38627 Applying LEU rotamer (chi angles: -86.5 61.2) to mutadedModel #3/4 LEU 182 
    38628 
    38629 > color #3/4:182 yellow
    38630 
    38631 > swapaa #3/4:184 GLN
    38632 
    38633 Using Dunbrack library 
    38634 mutadedModel #3/4 THR 184: phi -79.0, psi -18.2 trans 
    38635 Applying GLN rotamer (chi angles: -64.7 80.1 -18.5) to mutadedModel #3/4 GLN
    38636 184 
    38637 
    38638 > color #3/4:184 yellow
    38639 
    38640 > swapaa #3/4:185 ASP
    38641 
    38642 Using Dunbrack library 
    38643 mutadedModel #3/4 VAL 185: phi -72.5, psi -30.6 trans 
    38644 Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/4 ASP 185 
    38645 
    38646 > color #3/4:185 yellow
    38647 
    38648 > swapaa #3/4:187 ILE
    38649 
    38650 Using Dunbrack library 
    38651 mutadedModel #3/4 ARG 187: phi -82.0, psi -46.0 trans 
    38652 Applying ILE rotamer (chi angles: -65.5 168.9) to mutadedModel #3/4 ILE 187 
    38653 
    38654 > color #3/4:187 yellow
    38655 
    38656 > swapaa #3/4:188 PHE
    38657 
    38658 Using Dunbrack library 
    38659 mutadedModel #3/4 THR 188: phi -71.8, psi -21.8 trans 
    38660 Applying PHE rotamer (chi angles: -72.3 131.9) to mutadedModel #3/4 PHE 188 
    38661 
    38662 > color #3/4:188 yellow
    38663 
    38664 > swapaa #3/4:189 THR
    38665 
    38666 Using Dunbrack library 
    38667 mutadedModel #3/4 GLY 189: phi -75.5, psi -20.6 trans 
    38668 Applying THR rotamer (chi angles: 61.3) to mutadedModel #3/4 THR 189 
    38669 
    38670 > color #3/4:189 yellow
    38671 
    38672 > swapaa #3/4:190 CYS
    38673 
    38674 Using Dunbrack library 
    38675 mutadedModel #3/4 GLU 190: phi -88.8, psi -37.0 trans 
    38676 Applying CYS rotamer (chi angles: -67.1) to mutadedModel #3/4 CYS 190 
    38677 
    38678 > color #3/4:190 yellow
    38679 
    38680 > swapaa #3/4:191 ILE
    38681 
    38682 Using Dunbrack library 
    38683 mutadedModel #3/4 ARG 191: phi -92.8, psi -16.5 trans 
    38684 Applying ILE rotamer (chi angles: -66.9 168.8) to mutadedModel #3/4 ILE 191 
    38685 
    38686 > color #3/4:191 yellow
    38687 
    38688 > swapaa #3/4:193 ALA
    38689 
    38690 Using Dunbrack library 
    38691 Swapping mutadedModel #3/4 PRO 193 to ALA 
    38692 
    38693 > color #3/4:193 yellow
    38694 
    38695 > swapaa #3/4:194 PRO
    38696 
    38697 Using Dunbrack library 
    38698 mutadedModel #3/4 LYS 194: phi -112.4, psi 52.8 trans 
    38699 Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/4 PRO 194 
    38700 
    38701 > color #3/4:194 yellow
    38702 
    38703 > swapaa #3/4:195 ARG
    38704 
    38705 Using Dunbrack library 
    38706 mutadedModel #3/4 TYR 195: phi -42.1, psi 72.0 trans 
    38707 Applying ARG rotamer (chi angles: 85.3 -76.0 87.4 -178.1) to mutadedModel #3/4
    38708 ARG 195 
    38709 
    38710 > color #3/4:195 yellow
    38711 
    38712 > swapaa #3/4:196 PHE
    38713 
    38714 Using Dunbrack library 
    38715 mutadedModel #3/4 HIS 196: phi -84.1, psi 123.3 trans 
    38716 Applying PHE rotamer (chi angles: -69.5 -28.4) to mutadedModel #3/4 PHE 196 
    38717 
    38718 > color #3/4:196 yellow
    38719 
    38720 > swapaa #3/4:197 HIS
    38721 
    38722 Using Dunbrack library 
    38723 mutadedModel #3/4 GLU 197: phi -68.9, psi -40.1 trans 
    38724 Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/4 HIS 197 
    38725 
    38726 > color #3/4:197 yellow
    38727 
    38728 > swapaa #3/4:198 GLU
    38729 
    38730 Using Dunbrack library 
    38731 mutadedModel #3/4 SER 198: phi -86.4, psi none trans 
    38732 Applying GLU rotamer (chi angles: 65.1 -74.4 -51.1) to mutadedModel #3/4 GLU
    38733 198 
    38734 
    38735 > color #3/4:198 yellow
    38736 
    38737 > swapaa #3/4:201 VAL
    38738 
    38739 Using Dunbrack library 
    38740 mutadedModel #3/4 LEU 201: phi -80.4, psi -40.5 trans 
    38741 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/4 VAL 201 
    38742 
    38743 > color #3/4:201 yellow
    38744 
    38745 > swapaa #3/4:206 ASP
    38746 
    38747 Using Dunbrack library 
    38748 mutadedModel #3/4 GLU 206: phi -71.9, psi -24.0 trans 
    38749 Applying ASP rotamer (chi angles: -70.7 76.5) to mutadedModel #3/4 ASP 206 
    38750 
    38751 > color #3/4:206 yellow
    38752 
    38753 > swapaa #3/4:207 THR
    38754 
    38755 Using Dunbrack library 
    38756 mutadedModel #3/4 VAL 207: phi -82.2, psi -25.3 trans 
    38757 Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/4 THR 207 
    38758 
    38759 > color #3/4:207 yellow
    38760 
    38761 > swapaa #3/4:208 ILE
    38762 
    38763 Using Dunbrack library 
    38764 mutadedModel #3/4 GLN 208: phi -67.9, psi -39.2 trans 
    38765 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/4 ILE 208 
    38766 
    38767 > color #3/4:208 yellow
    38768 
    38769 > swapaa #3/4:209 ASP
    38770 
    38771 Using Dunbrack library 
    38772 mutadedModel #3/4 ALA 209: phi -76.2, psi -28.9 trans 
    38773 Applying ASP rotamer (chi angles: -170.3 60.7) to mutadedModel #3/4 ASP 209 
    38774 
    38775 > color #3/4:209 yellow
    38776 
    38777 > swapaa #3/4:210 ASN
    38778 
    38779 Using Dunbrack library 
    38780 mutadedModel #3/4 LEU 210: phi -78.7, psi -32.1 trans 
    38781 Applying ASN rotamer (chi angles: -71.8 -0.4) to mutadedModel #3/4 ASN 210 
    38782 
    38783 > color #3/4:210 yellow
    38784 
    38785 > swapaa #3/4:215 LEU
    38786 
    38787 Using Dunbrack library 
    38788 mutadedModel #3/4 GLN 215: phi -69.1, psi -41.1 trans 
    38789 Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/4 LEU 215 
    38790 
    38791 > color #3/4:215 yellow
    38792 
    38793 > swapaa #3/4:218 GLN
    38794 
    38795 Using Dunbrack library 
    38796 mutadedModel #3/4 PHE 218: phi -94.3, psi -43.2 trans 
    38797 Applying GLN rotamer (chi angles: -175.1 64.2 73.6) to mutadedModel #3/4 GLN
    38798 218 
    38799 
    38800 > color #3/4:218 yellow
    38801 
    38802 > swapaa #3/4:219 CYS
    38803 
    38804 Using Dunbrack library 
    38805 mutadedModel #3/4 GLU 219: phi -109.3, psi 79.1 trans 
    38806 Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/4 CYS 219 
    38807 
    38808 > color #3/4:219 yellow
    38809 
    38810 > swapaa #3/4:221 ALA
    38811 
    38812 Using Dunbrack library 
    38813 Swapping mutadedModel #3/4 LYS 221 to ALA 
    38814 
    38815 > color #3/4:221 yellow
    38816 
    38817 > swapaa #3/4:222 GLU
    38818 
    38819 Using Dunbrack library 
    38820 mutadedModel #3/4 ASN 222: phi -58.1, psi -35.0 trans 
    38821 Applying GLU rotamer (chi angles: -69.3 177.9 -8.3) to mutadedModel #3/4 GLU
    38822 222 
    38823 
    38824 > color #3/4:222 yellow
    38825 
    38826 > swapaa #3/4:223 TYR
    38827 
    38828 Using Dunbrack library 
    38829 mutadedModel #3/4 PHE 223: phi -65.1, psi -38.7 trans 
    38830 Applying TYR rotamer (chi angles: -175.9 75.8) to mutadedModel #3/4 TYR 223 
    38831 
    38832 > color #3/4:223 yellow
    38833 
    38834 > swapaa #3/4:225 LYS
    38835 
    38836 Using Dunbrack library 
    38837 mutadedModel #3/4 THR 225: phi -66.0, psi -45.5 trans 
    38838 Applying LYS rotamer (chi angles: -70.3 -171.1 -71.7 -174.4) to mutadedModel
    38839 #3/4 LYS 225 
    38840 
    38841 > color #3/4:225 yellow
    38842 
    38843 > swapaa #3/4:226 GLN
    38844 
    38845 Using Dunbrack library 
    38846 mutadedModel #3/4 GLU 226: phi -61.9, psi -38.2 trans 
    38847 Applying GLN rotamer (chi angles: -69.8 176.6 64.1) to mutadedModel #3/4 GLN
    38848 226 
    38849 
    38850 > color #3/4:226 yellow
    38851 
    38852 > swapaa #3/4:227 MET
    38853 
    38854 Using Dunbrack library 
    38855 mutadedModel #3/4 GLN 227: phi -79.5, psi -32.4 trans 
    38856 Applying MET rotamer (chi angles: -67.7 -57.6 -67.1) to mutadedModel #3/4 MET
    38857 227 
    38858 
    38859 > color #3/4:227 yellow
    38860 
    38861 > swapaa #3/4:229 GLU
    38862 
    38863 Using Dunbrack library 
    38864 mutadedModel #3/4 MET 229: phi -63.3, psi -36.0 trans 
    38865 Applying GLU rotamer (chi angles: -69.9 176.8 -8.7) to mutadedModel #3/4 GLU
    38866 229 
    38867 
    38868 > color #3/4:229 yellow
    38869 
    38870 > swapaa #3/4:230 THR
    38871 
    38872 Using Dunbrack library 
    38873 mutadedModel #3/4 ILE 230: phi -70.6, psi -44.4 trans 
    38874 Applying THR rotamer (chi angles: -60.5) to mutadedModel #3/4 THR 230 
    38875 
    38876 > color #3/4:230 yellow
    38877 
    38878 > swapaa #3/4:231 VAL
    38879 
    38880 Using Dunbrack library 
    38881 mutadedModel #3/4 ASN 231: phi -67.3, psi -32.0 trans 
    38882 Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 231 
    38883 
    38884 > color #3/4:231 yellow
    38885 
    38886 > swapaa #3/4:234 TYR
    38887 
    38888 Using Dunbrack library 
    38889 mutadedModel #3/4 TRP 234: phi -55.7, psi -33.7 trans 
    38890 Applying TYR rotamer (chi angles: -72.4 109.3) to mutadedModel #3/4 TYR 234 
    38891 
    38892 > color #3/4:234 yellow
    38893 
    38894 > swapaa #3/4:235 ARG
    38895 
    38896 Using Dunbrack library 
    38897 mutadedModel #3/4 SER 235: phi -114.9, psi -27.0 trans 
    38898 Applying ARG rotamer (chi angles: -64.4 -74.5 82.1 -166.6) to mutadedModel
    38899 #3/4 ARG 235 
    38900 
    38901 > color #3/4:235 yellow
    38902 
    38903 > swapaa #3/4:236 GLU
    38904 
    38905 Using Dunbrack library 
    38906 mutadedModel #3/4 ASP 236: phi -70.1, psi 173.8 trans 
    38907 Applying GLU rotamer (chi angles: -64.3 84.9 -6.3) to mutadedModel #3/4 GLU
    38908 236 
    38909 
    38910 > color #3/4:236 yellow
    38911 
    38912 > swapaa #3/4:241 PRO
    38913 
    38914 Using Dunbrack library 
    38915 mutadedModel #3/4 ALA 241: phi -71.0, psi 126.1 trans 
    38916 Applying PRO rotamer (chi angles: 25.0 -32.3) to mutadedModel #3/4 PRO 241 
    38917 
    38918 > color #3/4:241 yellow
    38919 
    38920 > swapaa #3/4:243 PHE
    38921 
    38922 Using Dunbrack library 
    38923 mutadedModel #3/4 THR 243: phi -110.4, psi 158.8 trans 
    38924 Applying PHE rotamer (chi angles: -65.2 116.3) to mutadedModel #3/4 PHE 243 
    38925 
    38926 > color #3/4:243 yellow
    38927 
    38928 > swapaa #3/4:246 ALA
    38929 
    38930 Using Dunbrack library 
    38931 Swapping mutadedModel #3/4 GLU 246 to ALA 
    38932 
    38933 > color #3/4:246 yellow
    38934 
    38935 > swapaa #3/4:249 ASN
    38936 
    38937 Using Dunbrack library 
    38938 mutadedModel #3/4 GLU 249: phi -85.4, psi -32.6 trans 
    38939 Applying ASN rotamer (chi angles: -69.7 -111.8) to mutadedModel #3/4 ASN 249 
    38940 
    38941 > color #3/4:249 yellow
    38942 
    38943 > swapaa #3/4:250 GLY
    38944 
    38945 Using Dunbrack library 
    38946 Swapping mutadedModel #3/4 ALA 250 to GLY 
    38947 
    38948 > color #3/4:250 yellow
    38949 
    38950 > swapaa #3/4:252 ILE
    38951 
    38952 Using Dunbrack library 
    38953 mutadedModel #3/4 ASN 252: phi -83.3, psi 13.3 trans 
    38954 Applying ILE rotamer (chi angles: -163.5 64.8) to mutadedModel #3/4 ILE 252 
    38955 
    38956 > color #3/4:252 yellow
    38957 
    38958 > swapaa #3/4:253 SER
    38959 
    38960 Using Dunbrack library 
    38961 mutadedModel #3/4 ALA 253: phi -67.2, psi 173.7 trans 
    38962 Applying SER rotamer (chi angles: -63.5) to mutadedModel #3/4 SER 253 
    38963 
    38964 > color #3/4:253 yellow
    38965 
    38966 > swapaa #3/4:254 SER
    38967 
    38968 Using Dunbrack library 
    38969 mutadedModel #3/4 LYS 254: phi -46.5, psi -123.9 trans 
    38970 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 254 
    38971 
    38972 > color #3/4:254 yellow
    38973 
    38974 > swapaa #3/4:255 SER
    38975 
    38976 Using Dunbrack library 
    38977 mutadedModel #3/4 GLN 255: phi -32.9, psi -31.7 trans 
    38978 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 255 
    38979 
    38980 > color #3/4:255 yellow
    38981 
    38982 > swapaa #3/4:257 LEU
    38983 
    38984 Using Dunbrack library 
    38985 mutadedModel #3/4 MET 257: phi -62.3, psi -36.0 trans 
    38986 Applying LEU rotamer (chi angles: -69.2 172.7) to mutadedModel #3/4 LEU 257 
    38987 
    38988 > color #3/4:257 yellow
    38989 
    38990 > swapaa #3/4:259 GLU
    38991 
    38992 Using Dunbrack library 
    38993 mutadedModel #3/4 ALA 259: phi -64.5, psi -36.3 trans 
    38994 Applying GLU rotamer (chi angles: -177.3 177.0 27.2) to mutadedModel #3/4 GLU
    38995 259 
    38996 
    38997 > color #3/4:259 yellow
    38998 
    38999 > swapaa #3/4:260 GLN
    39000 
    39001 Using Dunbrack library 
    39002 mutadedModel #3/4 ARG 260: phi -66.8, psi -47.3 trans 
    39003 Applying GLN rotamer (chi angles: -176.1 64.9 103.6) to mutadedModel #3/4 GLN
    39004 260 
    39005 
    39006 > color #3/4:260 yellow
    39007 
    39008 > swapaa #3/4:261 TYR
    39009 
    39010 Using Dunbrack library 
    39011 mutadedModel #3/4 TRP 261: phi -50.7, psi -37.8 trans 
    39012 Applying TYR rotamer (chi angles: 179.2 103.5) to mutadedModel #3/4 TYR 261 
    39013 
    39014 > color #3/4:261 yellow
    39015 
    39016 > swapaa #3/4:262 SER
    39017 
    39018 Using Dunbrack library 
    39019 mutadedModel #3/4 ALA 262: phi -82.3, psi -24.1 trans 
    39020 Applying SER rotamer (chi angles: 67.5) to mutadedModel #3/4 SER 262 
    39021 
    39022 > color #3/4:262 yellow
    39023 
    39024 > swapaa #3/4:263 ARG
    39025 
    39026 Using Dunbrack library 
    39027 mutadedModel #3/4 SER 263: phi -89.0, psi -33.4 trans 
    39028 Applying ARG rotamer (chi angles: -175.4 179.3 -64.6 161.9) to mutadedModel
    39029 #3/4 ARG 263 
    39030 
    39031 > color #3/4:263 yellow
    39032 
    39033 > swapaa #3/4:264 TYR
    39034 
    39035 Using Dunbrack library 
    39036 mutadedModel #3/4 LYS 264: phi -115.2, psi -18.5 trans 
    39037 Applying TYR rotamer (chi angles: -61.8 103.3) to mutadedModel #3/4 TYR 264 
    39038 
    39039 > color #3/4:264 yellow
    39040 
    39041 > swapaa #3/4:265 VAL
    39042 
    39043 Using Dunbrack library 
    39044 mutadedModel #3/4 PHE 265: phi -92.0, psi 73.6 trans 
    39045 Applying VAL rotamer (chi angles: -176.5) to mutadedModel #3/4 VAL 265 
    39046 
    39047 > color #3/4:265 yellow
    39048 
    39049 > swapaa #3/4:266 VAL
    39050 
    39051 Using Dunbrack library 
    39052 mutadedModel #3/4 LEU 266: phi -107.7, psi 168.7 trans 
    39053 Applying VAL rotamer (chi angles: -60.6) to mutadedModel #3/4 VAL 266 
    39054 
    39055 > color #3/4:266 yellow
    39056 
    39057 > swapaa #3/4:268 SER
    39058 
    39059 Using Dunbrack library 
    39060 mutadedModel #3/4 ASP 268: phi -92.4, psi -14.8 trans 
    39061 Applying SER rotamer (chi angles: -63.8) to mutadedModel #3/4 SER 268 
    39062 
    39063 > color #3/4:268 yellow
    39064 
    39065 > swapaa #3/4:269 ARG
    39066 
    39067 Using Dunbrack library 
    39068 mutadedModel #3/4 SER 269: phi -12.4, psi -73.3 trans 
    39069 Applying ARG rotamer (chi angles: 81.1 -69.0 -178.3 -84.6) to mutadedModel
    39070 #3/4 ARG 269 
    39071 
    39072 > color #3/4:269 yellow
    39073 
    39074 > swapaa #3/4:271 VAL
    39075 
    39076 Using Dunbrack library 
    39077 mutadedModel #3/4 THR 271: phi -133.4, psi -6.5 trans 
    39078 Applying VAL rotamer (chi angles: -62.1) to mutadedModel #3/4 VAL 271 
    39079 
    39080 > color #3/4:271 yellow
    39081 
    39082 > swapaa #3/4:273 ALA
    39083 
    39084 Using Dunbrack library 
    39085 Swapping mutadedModel #3/4 GLY 273 to ALA 
    39086 
    39087 > color #3/4:273 yellow
    39088 
    39089 > swapaa #3/4:276 ASN
    39090 
    39091 Using Dunbrack library 
    39092 mutadedModel #3/4 ASP 276: phi -172.0, psi -24.7 trans 
    39093 Applying ASN rotamer (chi angles: -69.2 -57.1) to mutadedModel #3/4 ASN 276 
    39094 
    39095 > color #3/4:276 yellow
    39096 
    39097 > swapaa #3/4:277 VAL
    39098 
    39099 Using Dunbrack library 
    39100 mutadedModel #3/4 PRO 277: phi -82.9, psi 154.0 trans 
    39101 Applying VAL rotamer (chi angles: -60.1) to mutadedModel #3/4 VAL 277 
    39102 
    39103 > color #3/4:277 yellow
    39104 
    39105 > swapaa #3/4:278 ASP
    39106 
    39107 Using Dunbrack library 
    39108 mutadedModel #3/4 PRO 278: phi -63.6, psi 174.6 trans 
    39109 Applying ASP rotamer (chi angles: -167.0 -64.1) to mutadedModel #3/4 ASP 278 
    39110 
    39111 > color #3/4:278 yellow
    39112 
    39113 > swapaa #3/4:279 HIS
    39114 
    39115 Using Dunbrack library 
    39116 mutadedModel #3/4 PHE 279: phi -80.0, psi -38.7 trans 
    39117 Applying HIS rotamer (chi angles: 66.1 -77.2) to mutadedModel #3/4 HIS 279 
    39118 
    39119 > color #3/4:279 yellow
    39120 
    39121 > swapaa #3/4:280 ALA
    39122 
    39123 Using Dunbrack library 
    39124 Swapping mutadedModel #3/4 GLU 280 to ALA 
    39125 
    39126 > color #3/4:280 yellow
    39127 
    39128 > swapaa #3/4:281 GLU
    39129 
    39130 Using Dunbrack library 
    39131 mutadedModel #3/4 ASP 281: phi -78.7, psi -19.7 trans 
    39132 Applying GLU rotamer (chi angles: -64.0 82.6 1.3) to mutadedModel #3/4 GLU 281 
    39133 
    39134 > color #3/4:281 yellow
    39135 
    39136 > swapaa #3/4:282 LEU
    39137 
    39138 Using Dunbrack library 
    39139 mutadedModel #3/4 ASN 282: phi -81.2, psi -34.6 trans 
    39140 Applying LEU rotamer (chi angles: -175.8 59.2) to mutadedModel #3/4 LEU 282 
    39141 
    39142 > color #3/4:282 yellow
    39143 
    39144 > swapaa #3/4:283 ILE
    39145 
    39146 Using Dunbrack library 
    39147 mutadedModel #3/4 GLU 283: phi -63.0, psi -43.6 trans 
    39148 Applying ILE rotamer (chi angles: -68.1 168.5) to mutadedModel #3/4 ILE 283 
    39149 
    39150 > color #3/4:283 yellow
    39151 
    39152 > swapaa #3/4:284 ALA
    39153 
    39154 Using Dunbrack library 
    39155 Swapping mutadedModel #3/4 PRO 284 to ALA 
    39156 
    39157 > color #3/4:284 yellow
    39158 
    39159 > swapaa #3/4:285 GLU
    39160 
    39161 Using Dunbrack library 
    39162 mutadedModel #3/4 VAL 285: phi -74.7, psi -16.4 trans 
    39163 Applying GLU rotamer (chi angles: -67.2 -64.8 78.4) to mutadedModel #3/4 GLU
    39164 285 
    39165 
    39166 > color #3/4:285 yellow
    39167 
    39168 > swapaa #3/4:286 TYR
    39169 
    39170 Using Dunbrack library 
    39171 mutadedModel #3/4 PHE 286: phi 88.5, psi 123.6 cis 
    39172 Applying TYR rotamer (chi angles: -65.1 119.0) to mutadedModel #3/4 TYR 286 
    39173 
    39174 > color #3/4:286 yellow
    39175 
    39176 > swapaa #3/4:287 GLU
    39177 
    39178 Using Dunbrack library 
    39179 mutadedModel #3/4 THR 287: phi -87.1, psi -25.6 trans 
    39180 Applying GLU rotamer (chi angles: -66.1 179.0 -6.7) to mutadedModel #3/4 GLU
    39181 287 
    39182 
    39183 > color #3/4:287 yellow
    39184 
    39185 > swapaa #3/4:289 THR
    39186 
    39187 Using Dunbrack library 
    39188 mutadedModel #3/4 ASP 289: phi -74.9, psi 108.3 trans 
    39189 Applying THR rotamer (chi angles: -177.3) to mutadedModel #3/4 THR 289 
    39190 
    39191 > color #3/4:289 yellow
    39192 
    39193 > swapaa #3/4:291 PHE
    39194 
    39195 Using Dunbrack library 
    39196 mutadedModel #3/4 TRP 291: phi -101.2, psi 80.1 trans 
    39197 Applying PHE rotamer (chi angles: -64.9 0.7) to mutadedModel #3/4 PHE 291 
    39198 
    39199 > color #3/4:291 yellow
    39200 
    39201 > swapaa #3/4:292 PRO
    39202 
    39203 Using Dunbrack library 
    39204 mutadedModel #3/4 VAL 292: phi -72.4, psi 135.1 trans 
    39205 Applying PRO rotamer (chi angles: 25.6 -33.6) to mutadedModel #3/4 PRO 292 
    39206 
    39207 > color #3/4:292 yellow
    39208 
    39209 > swapaa #3/4:293 HIS
    39210 
    39211 Using Dunbrack library 
    39212 mutadedModel #3/4 PHE 293: phi -61.9, psi 141.0 trans 
    39213 Applying HIS rotamer (chi angles: -172.3 -26.8) to mutadedModel #3/4 HIS 293 
    39214 
    39215 > color #3/4:293 yellow
    39216 
    39217 > swapaa #3/4:297 ALA
    39218 
    39219 Using Dunbrack library 
    39220 Swapping mutadedModel #3/4 SER 297 to ALA 
    39221 
    39222 > color #3/4:297 yellow
    39223 
    39224 > swapaa #3/4:298 PRO
    39225 
    39226 Using Dunbrack library 
    39227 mutadedModel #3/4 ALA 298: phi -51.3, psi -45.2 trans 
    39228 Applying PRO rotamer (chi angles: -30.8 40.1) to mutadedModel #3/4 PRO 298 
    39229 
    39230 > color #3/4:298 yellow
    39231 
    39232 > swapaa #3/4:299 HIS
    39233 
    39234 Using Dunbrack library 
    39235 mutadedModel #3/4 PHE 299: phi -86.3, psi -26.5 trans 
    39236 Applying HIS rotamer (chi angles: 65.2 76.2) to mutadedModel #3/4 HIS 299 
    39237 
    39238 > color #3/4:299 yellow
    39239 
    39240 > swapaa #3/4:300 HIS
    39241 
    39242 Using Dunbrack library 
    39243 mutadedModel #3/4 PHE 300: phi -76.8, psi -24.4 trans 
    39244 Applying HIS rotamer (chi angles: -68.2 -44.0) to mutadedModel #3/4 HIS 300 
    39245 
    39246 > color #3/4:300 yellow
    39247 
    39248 > swapaa #3/4:301 ALA
    39249 
    39250 Using Dunbrack library 
    39251 Swapping mutadedModel #3/4 SER 301 to ALA 
    39252 
    39253 > color #3/4:301 yellow
    39254 
    39255 > swapaa #3/4:303 GLU
    39256 
    39257 Using Dunbrack library 
    39258 mutadedModel #3/4 ASN 303: phi -106.7, psi 139.3 trans 
    39259 Applying GLU rotamer (chi angles: -178.1 178.2 26.5) to mutadedModel #3/4 GLU
    39260 303 
    39261 
    39262 > color #3/4:303 yellow
    39263 
    39264 > swapaa #3/4:304 GLN
    39265 
    39266 Using Dunbrack library 
    39267 mutadedModel #3/4 GLY 304: phi -24.6, psi 15.5 trans 
    39268 Applying GLN rotamer (chi angles: -66.6 81.0 -17.6) to mutadedModel #3/4 GLN
    39269 304 
    39270 
    39271 > color #3/4:304 yellow
    39272 
    39273 > swapaa #3/4:305 PRO
    39274 
    39275 Using Dunbrack library 
    39276 mutadedModel #3/4 GLY 305: phi 142.0, psi 19.0 trans 
    39277 Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/4 PRO 305 
    39278 
    39279 > color #3/4:305 yellow
    39280 
    39281 > swapaa #3/4:306 SER
    39282 
    39283 Using Dunbrack library 
    39284 mutadedModel #3/4 VAL 306: phi 6.3, psi none cis 
    39285 Applying SER rotamer (chi angles: -63.9) to mutadedModel #3/4 SER 306 
    39286 
    39287 > color #3/4:306 yellow
    39288 
    39289 > swapaa #3/4:310 SER
    39290 
    39291 Using Dunbrack library 
    39292 mutadedModel #3/4 GLY 310: phi -39.1, psi -168.8 trans 
    39293 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 310 
    39294 
    39295 > color #3/4:310 yellow
    39296 
    39297 > swapaa #3/4:311 LYS
    39298 
    39299 Using Dunbrack library 
    39300 mutadedModel #3/4 VAL 311: phi 39.9, psi 93.0 trans 
    39301 Applying LYS rotamer (chi angles: -179.0 67.5 68.0 63.6) to mutadedModel #3/4
    39302 LYS 311 
    39303 
    39304 > color #3/4:311 yellow
    39305 
    39306 > swapaa #3/4:312 ASP
    39307 
    39308 Using Dunbrack library 
    39309 mutadedModel #3/4 PRO 312: phi -69.9, psi -50.0 trans 
    39310 Applying ASP rotamer (chi angles: -70.9 -16.3) to mutadedModel #3/4 ASP 312 
    39311 
    39312 > color #3/4:312 yellow
    39313 
    39314 > swapaa #3/4:313 GLU
    39315 
    39316 Using Dunbrack library 
    39317 mutadedModel #3/4 GLY 313: phi -55.3, psi -11.8 trans 
    39318 Applying GLU rotamer (chi angles: -68.1 179.0 -6.3) to mutadedModel #3/4 GLU
    39319 313 
    39320 
    39321 > color #3/4:313 yellow
    39322 
    39323 > swapaa #3/4:318 THR
    39324 
    39325 Using Dunbrack library 
    39326 mutadedModel #3/4 ARG 318: phi -121.7, psi 106.0 trans 
    39327 Applying THR rotamer (chi angles: 57.7) to mutadedModel #3/4 THR 318 
    39328 
    39329 > color #3/4:318 yellow
    39330 
    39331 > swapaa #3/4:321 GLU
    39332 
    39333 Using Dunbrack library 
    39334 mutadedModel #3/4 LYS 321: phi 175.3, psi 142.2 cis 
    39335 Applying GLU rotamer (chi angles: -178.6 64.6 88.5) to mutadedModel #3/4 GLU
    39336 321 
    39337 
    39338 > color #3/4:321 yellow
    39339 
    39340 > swapaa #3/4:322 ARG
    39341 
    39342 Using Dunbrack library 
    39343 mutadedModel #3/4 LYS 322: phi -143.9, psi 122.1 trans 
    39344 Applying ARG rotamer (chi angles: -65.2 -70.2 -176.9 -85.5) to mutadedModel
    39345 #3/4 ARG 322 
    39346 
    39347 > color #3/4:322 yellow
    39348 
    39349 > swapaa #3/4:323 HIS
    39350 
    39351 Using Dunbrack library 
    39352 mutadedModel #3/4 ILE 323: phi -113.6, psi 124.2 trans 
    39353 Applying HIS rotamer (chi angles: 64.0 -92.4) to mutadedModel #3/4 HIS 323 
    39354 
    39355 > color #3/4:323 yellow
    39356 
    39357 > swapaa #3/4:324 ASP
    39358 
    39359 Using Dunbrack library 
    39360 mutadedModel #3/4 VAL 324: phi -119.1, psi 87.2 trans 
    39361 Applying ASP rotamer (chi angles: -177.1 -8.1) to mutadedModel #3/4 ASP 324 
    39362 
    39363 > color #3/4:324 yellow
    39364 
    39365 > swapaa #3/4:325 HIS
    39366 
    39367 Using Dunbrack library 
    39368 mutadedModel #3/4 TYR 325: phi -54.1, psi 125.7 trans 
    39369 Applying HIS rotamer (chi angles: -173.8 73.6) to mutadedModel #3/4 HIS 325 
    39370 
    39371 > color #3/4:325 yellow
    39372 
    39373 > swapaa #3/4:326 GLU
    39374 
    39375 Using Dunbrack library 
    39376 mutadedModel #3/4 LYS 326: phi -144.1, psi 124.1 trans 
    39377 Applying GLU rotamer (chi angles: -177.8 177.2 -1.7) to mutadedModel #3/4 GLU
    39378 326 
    39379 
    39380 > color #3/4:326 yellow
    39381 
    39382 > swapaa #3/4:329 PRO
    39383 
    39384 Using Dunbrack library 
    39385 mutadedModel #3/4 SER 329: phi -78.8, psi -27.7 trans 
    39386 Applying PRO rotamer (chi angles: -24.1 35.5) to mutadedModel #3/4 PRO 329 
    39387 
    39388 > color #3/4:329 yellow
    39389 
    39390 > swapaa #3/4:330 LYS
    39391 
    39392 Using Dunbrack library 
    39393 mutadedModel #3/4 SER 330: phi -79.4, psi -24.7 trans 
    39394 Applying LYS rotamer (chi angles: -68.6 -177.5 175.0 65.8) to mutadedModel
    39395 #3/4 LYS 330 
    39396 
    39397 > color #3/4:330 yellow
    39398 
    39399 > swapaa #3/4:332 MET
    39400 
    39401 Using Dunbrack library 
    39402 mutadedModel #3/4 ARG 332: phi -76.6, psi -71.9 trans 
    39403 Applying MET rotamer (chi angles: -70.2 -172.0 -74.2) to mutadedModel #3/4 MET
    39404 332 
    39405 
    39406 > color #3/4:332 yellow
    39407 
    39408 > swapaa #3/4:334 THR
    39409 
    39410 Using Dunbrack library 
    39411 mutadedModel #3/4 ASN 334: phi -84.8, psi -2.9 trans 
    39412 Applying THR rotamer (chi angles: -168.1) to mutadedModel #3/4 THR 334 
    39413 
    39414 > color #3/4:334 yellow
    39415 
    39416 > swapaa #3/4:338 MET
    39417 
    39418 Using Dunbrack library 
    39419 mutadedModel #3/4 ARG 338: phi -68.2, psi 107.8 trans 
    39420 Applying MET rotamer (chi angles: -66.2 178.9 71.5) to mutadedModel #3/4 MET
    39421 338 
    39422 
    39423 > color #3/4:338 yellow
    39424 
    39425 > swapaa #3/4:339 ASP
    39426 
    39427 Using Dunbrack library 
    39428 mutadedModel #3/4 GLU 339: phi -106.7, psi 136.0 trans 
    39429 Applying ASP rotamer (chi angles: 63.3 17.2) to mutadedModel #3/4 ASP 339 
    39430 
    39431 > color #3/4:339 yellow
    39432 
    39433 > swapaa #3/4:341 GLU
    39434 
    39435 Using Dunbrack library 
    39436 mutadedModel #3/4 LYS 341: phi -122.0, psi 153.8 trans 
    39437 Applying GLU rotamer (chi angles: -62.2 -70.1 -20.3) to mutadedModel #3/4 GLU
    39438 341 
    39439 
    39440 > color #3/4:341 yellow
    39441 
    39442 > swapaa #3/4:342 SER
    39443 
    39444 Using Dunbrack library 
    39445 mutadedModel #3/4 VAL 342: phi -139.7, psi 135.0 trans 
    39446 Applying SER rotamer (chi angles: 178.0) to mutadedModel #3/4 SER 342 
    39447 
    39448 > color #3/4:342 yellow
    39449 
    39450 > swapaa #3/4:344 ILE
    39451 
    39452 Using Dunbrack library 
    39453 mutadedModel #3/4 CYS 344: phi -123.1, psi 142.6 trans 
    39454 Applying ILE rotamer (chi angles: -61.6 169.8) to mutadedModel #3/4 ILE 344 
    39455 
    39456 > color #3/4:344 yellow
    39457 
    39458 > swapaa #3/4:346 VAL
    39459 
    39460 Using Dunbrack library 
    39461 mutadedModel #3/4 ILE 346: phi -133.0, psi 121.3 trans 
    39462 Applying VAL rotamer (chi angles: 179.0) to mutadedModel #3/4 VAL 346 
    39463 
    39464 > color #3/4:346 yellow
    39465 
    39466 > swapaa #3/4:348 TRP
    39467 
    39468 Using Dunbrack library 
    39469 mutadedModel #3/4 ASN 348: phi -127.6, psi -179.4 trans 
    39470 Applying TRP rotamer (chi angles: 61.6 92.9) to mutadedModel #3/4 TRP 348 
    39471 
    39472 > color #3/4:348 yellow
    39473 
    39474 > swapaa #3/4:349 LEU
    39475 
    39476 Using Dunbrack library 
    39477 mutadedModel #3/4 GLU 349: phi -92.3, psi 131.1 trans 
    39478 Applying LEU rotamer (chi angles: 178.8 65.6) to mutadedModel #3/4 LEU 349 
    39479 
    39480 > color #3/4:349 yellow
    39481 
    39482 > swapaa #3/4:350 ALA
    39483 
    39484 Using Dunbrack library 
    39485 Swapping mutadedModel #3/4 GLY 350 to ALA 
    39486 
    39487 > color #3/4:350 yellow
    39488 
    39489 > swapaa #3/4:351 TYR
    39490 
    39491 Using Dunbrack library 
    39492 mutadedModel #3/4 PHE 351: phi -62.9, psi 147.9 trans 
    39493 Applying TYR rotamer (chi angles: -71.0 101.9) to mutadedModel #3/4 TYR 351 
    39494 
    39495 > color #3/4:351 yellow
    39496 
    39497 > swapaa #3/4:352 GLY
    39498 
    39499 Using Dunbrack library 
    39500 Swapping mutadedModel #3/4 SER 352 to GLY 
    39501 
    39502 > color #3/4:352 yellow
    39503 
    39504 > swapaa #3/4:353 LYS
    39505 
    39506 Using Dunbrack library 
    39507 mutadedModel #3/4 ARG 353: phi 55.6, psi -112.5 trans 
    39508 Applying LYS rotamer (chi angles: -178.2 90.8 -76.1 -174.6) to mutadedModel
    39509 #3/4 LYS 353 
    39510 
    39511 > color #3/4:353 yellow
    39512 
    39513 > swapaa #3/4:354 ASP
    39514 
    39515 Using Dunbrack library 
    39516 mutadedModel #3/4 LYS 354: phi -155.9, psi -32.5 cis 
    39517 Applying ASP rotamer (chi angles: -171.5 27.2) to mutadedModel #3/4 ASP 354 
    39518 
    39519 > color #3/4:354 yellow
    39520 
    39521 > swapaa #3/4:355 LYS
    39522 
    39523 Using Dunbrack library 
    39524 mutadedModel #3/4 GLY 355: phi -49.5, psi 45.0 trans 
    39525 Applying LYS rotamer (chi angles: -67.2 -178.5 -177.7 -64.7) to mutadedModel
    39526 #3/4 LYS 355 
    39527 
    39528 > color #3/4:355 yellow
    39529 
    39530 > swapaa #3/4:356 LYS
    39531 
    39532 Using Dunbrack library 
    39533 mutadedModel #3/4 VAL 356: phi -17.1, psi -9.4 trans 
    39534 Applying LYS rotamer (chi angles: -68.8 -178.9 -177.7 -64.9) to mutadedModel
    39535 #3/4 LYS 356 
    39536 
    39537 > color #3/4:356 yellow
    39538 
    39539 > swapaa #3/4:357 MET
    39540 
    39541 Using Dunbrack library 
    39542 mutadedModel #3/4 ASN 357: phi -37.3, psi 75.4 trans 
    39543 Applying MET rotamer (chi angles: -134.1 -54.5 108.8) to mutadedModel #3/4 MET
    39544 357 
    39545 
    39546 > color #3/4:357 yellow
    39547 
    39548 > swapaa #3/4:360 ASP
    39549 
    39550 Using Dunbrack library 
    39551 mutadedModel #3/4 ALA 360: phi -66.8, psi -34.9 trans 
    39552 Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/4 ASP 360 
    39553 
    39554 > color #3/4:360 yellow
    39555 
    39556 > swapaa #3/4:361 HIS
    39557 
    39558 Using Dunbrack library 
    39559 mutadedModel #3/4 TYR 361: phi -74.0, psi -30.1 trans 
    39560 Applying HIS rotamer (chi angles: -173.7 -173.6) to mutadedModel #3/4 HIS 361 
    39561 
    39562 > color #3/4:361 yellow
    39563 
    39564 > swapaa #3/4:363 ALA
    39565 
    39566 Using Dunbrack library 
    39567 Swapping mutadedModel #3/4 THR 363 to ALA 
    39568 
    39569 > color #3/4:363 yellow
    39570 
    39571 > swapaa #3/4:367 VAL
    39572 
    39573 Using Dunbrack library 
    39574 mutadedModel #3/4 ILE 367: phi -54.8, psi -44.8 trans 
    39575 Applying VAL rotamer (chi angles: 171.0) to mutadedModel #3/4 VAL 367 
    39576 
    39577 > color #3/4:367 yellow
    39578 
    39579 > swapaa #3/4:368 LYS
    39580 
    39581 Using Dunbrack library 
    39582 mutadedModel #3/4 ARG 368: phi -50.9, psi -45.5 trans 
    39583 Applying LYS rotamer (chi angles: -172.0 -90.8 -172.8 -177.4) to mutadedModel
    39584 #3/4 LYS 368 
    39585 
    39586 > color #3/4:368 yellow
    39587 
    39588 > swapaa #3/4:371 MET
    39589 
    39590 Using Dunbrack library 
    39591 mutadedModel #3/4 GLN 371: phi -59.3, psi -42.5 trans 
    39592 Applying MET rotamer (chi angles: -69.1 174.7 69.8) to mutadedModel #3/4 MET
    39593 371 
    39594 
    39595 > color #3/4:371 yellow
    39596 
    39597 > swapaa #3/4:372 ASP
    39598 
    39599 Using Dunbrack library 
    39600 mutadedModel #3/4 GLU 372: phi -64.9, psi -36.8 trans 
    39601 Applying ASP rotamer (chi angles: -71.8 42.4) to mutadedModel #3/4 ASP 372 
    39602 
    39603 > color #3/4:372 yellow
    39604 
    39605 > swapaa #3/4:373 ILE
    39606 
    39607 Using Dunbrack library 
    39608 mutadedModel #3/4 LEU 373: phi -67.4, psi -44.1 trans 
    39609 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/4 ILE 373 
    39610 
    39611 > color #3/4:373 yellow
    39612 
    39613 > swapaa #3/4:374 GLN
    39614 
    39615 Using Dunbrack library 
    39616 mutadedModel #3/4 SER 374: phi -73.0, psi -34.2 trans 
    39617 Applying GLN rotamer (chi angles: -173.9 63.3 103.8) to mutadedModel #3/4 GLN
    39618 374 
    39619 
    39620 > color #3/4:374 yellow
    39621 
    39622 > swapaa #3/4:375 PHE
    39623 
    39624 Using Dunbrack library 
    39625 mutadedModel #3/4 LYS 375: phi -74.4, psi -41.1 trans 
    39626 Applying PHE rotamer (chi angles: -73.3 -17.3) to mutadedModel #3/4 PHE 375 
    39627 
    39628 > color #3/4:375 yellow
    39629 
    39630 > swapaa #3/4:376 SER
    39631 
    39632 Using Dunbrack library 
    39633 mutadedModel #3/4 GLN 376: phi -61.4, psi -30.9 trans 
    39634 Applying SER rotamer (chi angles: 66.4) to mutadedModel #3/4 SER 376 
    39635 
    39636 > color #3/4:376 yellow
    39637 
    39638 > swapaa #3/4:377 GLY
    39639 
    39640 Using Dunbrack library 
    39641 Swapping mutadedModel #3/4 GLU 377 to GLY 
    39642 
    39643 > color #3/4:377 yellow
    39644 
    39645 > swapaa #3/4:378 CYS
    39646 
    39647 Using Dunbrack library 
    39648 mutadedModel #3/4 ALA 378: phi -115.8, psi 29.3 trans 
    39649 Applying CYS rotamer (chi angles: -63.2) to mutadedModel #3/4 CYS 378 
    39650 
    39651 > color #3/4:378 yellow
    39652 
    39653 > swapaa #3/4:379 VAL
    39654 
    39655 Using Dunbrack library 
    39656 mutadedModel #3/4 GLY 379: phi 175.2, psi 28.0 trans 
    39657 Applying VAL rotamer (chi angles: 64.6) to mutadedModel #3/4 VAL 379 
    39658 
    39659 > color #3/4:379 yellow
    39660 
    39661 > swapaa #3/4:380 ARG
    39662 
    39663 Using Dunbrack library 
    39664 mutadedModel #3/4 GLY 380: phi 62.8, psi 41.9 trans 
    39665 Applying ARG rotamer (chi angles: -87.2 79.2 -84.3 -75.1) to mutadedModel #3/4
    39666 ARG 380 
    39667 
    39668 > color #3/4:380 yellow
    39669 
    39670 > swapaa #3/4:381 TYR
    39671 
    39672 Using Dunbrack library 
    39673 mutadedModel #3/4 VAL 381: phi 32.2, psi 112.9 cis 
    39674 Applying TYR rotamer (chi angles: 63.9 89.9) to mutadedModel #3/4 TYR 381 
    39675 
    39676 > color #3/4:381 yellow
    39677 
    39678 > swapaa #3/4:382 ALA
    39679 
    39680 Using Dunbrack library 
    39681 Swapping mutadedModel #3/4 ARG 382 to ALA 
    39682 
    39683 > color #3/4:382 yellow
    39684 
    39685 > swapaa #3/4:383 HIS
    39686 
    39687 Using Dunbrack library 
    39688 mutadedModel #3/4 ALA 383: phi 2.1, psi -31.7 trans 
    39689 Applying HIS rotamer (chi angles: 64.2 -78.4) to mutadedModel #3/4 HIS 383 
    39690 
    39691 > color #3/4:383 yellow
    39692 
    39693 > swapaa #3/4:387 TYR
    39694 
    39695 Using Dunbrack library 
    39696 mutadedModel #3/4 PRO 387: phi none, psi 36.5 trans 
    39697 Applying TYR rotamer (chi angles: 63.6 90.2) to mutadedModel #3/4 TYR 387 
    39698 
    39699 > color #3/4:387 yellow
    39700 
    39701 > swapaa #3/4:388 GLU
    39702 
    39703 Using Dunbrack library 
    39704 mutadedModel #3/4 LEU 388: phi -29.1, psi 89.8 trans 
    39705 Applying GLU rotamer (chi angles: 66.6 -84.2 -9.9) to mutadedModel #3/4 GLU
    39706 388 
    39707 
    39708 > color #3/4:388 yellow
    39709 
    39710 > swapaa #3/4:389 HIS
    39711 
    39712 Using Dunbrack library 
    39713 mutadedModel #3/4 GLY 389: phi -36.3, psi -92.2 trans 
    39714 Applying HIS rotamer (chi angles: -177.1 -81.1) to mutadedModel #3/4 HIS 389 
    39715 
    39716 > color #3/4:389 yellow
    39717 
    39718 > swapaa #3/4:390 ALA
    39719 
    39720 Using Dunbrack library 
    39721 Swapping mutadedModel #3/4 GLY 390 to ALA 
    39722 
    39723 > color #3/4:390 yellow
    39724 
    39725 > swapaa #3/4:391 GLY
    39726 
    39727 Using Dunbrack library 
    39728 Swapping mutadedModel #3/4 THR 391 to GLY 
    39729 
    39730 > color #3/4:391 yellow
    39731 
    39732 > swapaa #3/4:392 LEU
    39733 
    39734 Using Dunbrack library 
    39735 mutadedModel #3/4 VAL 392: phi -85.1, psi 131.9 trans 
    39736 Applying LEU rotamer (chi angles: 61.9 81.8) to mutadedModel #3/4 LEU 392 
    39737 
    39738 > color #3/4:392 yellow
    39739 
    39740 > swapaa #3/4:393 ARG
    39741 
    39742 Using Dunbrack library 
    39743 mutadedModel #3/4 LYS 393: phi -118.0, psi 170.3 trans 
    39744 Applying ARG rotamer (chi angles: -74.4 84.8 69.7 -167.8) to mutadedModel #3/4
    39745 ARG 393 
    39746 
    39747 > color #3/4:393 yellow
    39748 
    39749 > swapaa #3/4:394 ALA
    39750 
    39751 Using Dunbrack library 
    39752 Swapping mutadedModel #3/4 VAL 394 to ALA 
    39753 
    39754 > color #3/4:394 yellow
    39755 
    39756 > swapaa #3/4:396 TYR
    39757 
    39758 Using Dunbrack library 
    39759 mutadedModel #3/4 PHE 396: phi -105.6, psi -34.0 trans 
    39760 Applying TYR rotamer (chi angles: -177.5 51.5) to mutadedModel #3/4 TYR 396 
    39761 
    39762 > color #3/4:396 yellow
    39763 
    39764 > swapaa #3/4:397 SER
    39765 
    39766 Using Dunbrack library 
    39767 mutadedModel #3/4 GLU 397: phi -29.5, psi 100.9 trans 
    39768 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 397 
    39769 
    39770 > color #3/4:397 yellow
    39771 
    39772 > swapaa #3/4:399 TYR
    39773 
    39774 Using Dunbrack library 
    39775 mutadedModel #3/4 PHE 399: phi -116.7, psi -102.8 trans 
    39776 Applying TYR rotamer (chi angles: -67.2 124.2) to mutadedModel #3/4 TYR 399 
    39777 
    39778 > color #3/4:399 yellow
    39779 
    39780 > swapaa #3/4:400 GLN
    39781 
    39782 Using Dunbrack library 
    39783 mutadedModel #3/4 GLU 400: phi -99.7, psi 52.1 trans 
    39784 Applying GLN rotamer (chi angles: -61.3 -64.4 -52.3) to mutadedModel #3/4 GLN
    39785 400 
    39786 
    39787 > color #3/4:400 yellow
    39788 
    39789 > swapaa #3/4:401 THR
    39790 
    39791 Using Dunbrack library 
    39792 mutadedModel #3/4 ASP 401: phi 132.2, psi 15.2 trans 
    39793 Applying THR rotamer (chi angles: -60.4) to mutadedModel #3/4 THR 401 
    39794 
    39795 > color #3/4:401 yellow
    39796 
    39797 > swapaa #3/4:405 MET
    39798 
    39799 Using Dunbrack library 
    39800 mutadedModel #3/4 ILE 405: phi -137.7, psi none trans 
    39801 Applying MET rotamer (chi angles: -174.6 179.7 -71.6) to mutadedModel #3/4 MET
    39802 405 
    39803 
    39804 > color #3/4:405 yellow
    39805 
    39806 > swapaa #3/4:407 PHE
    39807 
    39808 Using Dunbrack library 
    39809 mutadedModel #3/4 TYR 407: phi none, psi 138.5 trans 
    39810 Applying PHE rotamer (chi angles: 63.0 90.4) to mutadedModel #3/4 PHE 407 
    39811 
    39812 > color #3/4:407 yellow
    39813 
    39814 > swapaa #3/4:408 THR
    39815 
    39816 Using Dunbrack library 
    39817 mutadedModel #3/4 VAL 408: phi -114.3, psi 137.0 trans 
    39818 Applying THR rotamer (chi angles: -178.1) to mutadedModel #3/4 THR 408 
    39819 
    39820 > color #3/4:408 yellow
    39821 
    39822 > swapaa #3/4:409 ALA
    39823 
    39824 Using Dunbrack library 
    39825 Swapping mutadedModel #3/4 VAL 409 to ALA 
    39826 
    39827 > color #3/4:409 yellow
    39828 
    39829 > swapaa #3/4:410 LYS
    39830 
    39831 Using Dunbrack library 
    39832 mutadedModel #3/4 THR 410: phi -127.8, psi 114.6 trans 
    39833 Applying LYS rotamer (chi angles: -176.8 177.2 -176.1 -66.0) to mutadedModel
    39834 #3/4 LYS 410 
    39835 
    39836 > color #3/4:410 yellow
    39837 
    39838 > swapaa #3/4:411 THR
    39839 
    39840 Using Dunbrack library 
    39841 mutadedModel #3/4 ARG 411: phi -142.3, psi 179.8 trans 
    39842 Applying THR rotamer (chi angles: -168.8) to mutadedModel #3/4 THR 411 
    39843 
    39844 > color #3/4:411 yellow
    39845 
    39846 > swapaa #3/4:412 GLU
    39847 
    39848 Using Dunbrack library 
    39849 mutadedModel #3/4 SER 412: phi -83.1, psi 158.0 trans 
    39850 Applying GLU rotamer (chi angles: -63.6 83.9 -9.7) to mutadedModel #3/4 GLU
    39851 412 
    39852 
    39853 > color #3/4:412 yellow
    39854 
    39855 > swapaa #3/4:414 GLN
    39856 
    39857 Using Dunbrack library 
    39858 mutadedModel #3/4 ALA 414: phi -74.3, psi -28.6 trans 
    39859 Applying GLN rotamer (chi angles: -173.9 63.3 74.0) to mutadedModel #3/4 GLN
    39860 414 
    39861 
    39862 > color #3/4:414 yellow
    39863 
    39864 > swapaa #3/4:417 VAL
    39865 
    39866 Using Dunbrack library 
    39867 mutadedModel #3/4 ALA 417: phi -73.6, psi -34.3 trans 
    39868 Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 417 
    39869 
    39870 > color #3/4:417 yellow
    39871 
    39872 > swapaa #3/4:418 ARG
    39873 
    39874 Using Dunbrack library 
    39875 mutadedModel #3/4 LYS 418: phi -66.0, psi -39.6 trans 
    39876 Applying ARG rotamer (chi angles: -70.6 -177.7 -69.3 168.0) to mutadedModel
    39877 #3/4 ARG 418 
    39878 
    39879 > color #3/4:418 yellow
    39880 
    39881 > swapaa #3/4:419 MET
    39882 
    39883 Using Dunbrack library 
    39884 mutadedModel #3/4 ARG 419: phi -76.8, psi -31.0 trans 
    39885 Applying MET rotamer (chi angles: -67.7 -57.6 -67.1) to mutadedModel #3/4 MET
    39886 419 
    39887 
    39888 > color #3/4:419 yellow
    39889 
    39890 > swapaa #3/4:420 VAL
    39891 
    39892 Using Dunbrack library 
    39893 mutadedModel #3/4 LEU 420: phi -75.9, psi -30.1 trans 
    39894 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/4 VAL 420 
    39895 
    39896 > color #3/4:420 yellow
    39897 
    39898 > swapaa #3/4:421 THR
    39899 
    39900 Using Dunbrack library 
    39901 mutadedModel #3/4 GLU 421: phi -92.0, psi -34.2 trans 
    39902 Applying THR rotamer (chi angles: -59.9) to mutadedModel #3/4 THR 421 
    39903 
    39904 > color #3/4:421 yellow
    39905 
    39906 > swapaa #3/4:422 ASP
    39907 
    39908 Using Dunbrack library 
    39909 mutadedModel #3/4 THR 422: phi -78.9, psi -6.4 trans 
    39910 Applying ASP rotamer (chi angles: 62.7 25.2) to mutadedModel #3/4 ASP 422 
    39911 
    39912 > color #3/4:422 yellow
    39913 
    39914 > swapaa #3/4:423 ALA
    39915 
    39916 Using Dunbrack library 
    39917 Swapping mutadedModel #3/4 VAL 423 to ALA 
    39918 
    39919 > color #3/4:423 yellow
    39920 
    39921 > swapaa #3/4:424 VAL
    39922 
    39923 Using Dunbrack library 
    39924 mutadedModel #3/4 GLY 424: phi -63.3, psi -30.8 trans 
    39925 Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/4 VAL 424 
    39926 
    39927 > color #3/4:424 yellow
    39928 
    39929 > swapaa #3/4:426 MET
    39930 
    39931 Using Dunbrack library 
    39932 mutadedModel #3/4 ASP 426: phi -60.1, psi 12.9 trans 
    39933 Applying MET rotamer (chi angles: -67.9 176.8 70.6) to mutadedModel #3/4 MET
    39934 426 
    39935 
    39936 > color #3/4:426 yellow
    39937 
    39938 > swapaa #3/4:427 VAL
    39939 
    39940 Using Dunbrack library 
    39941 mutadedModel #3/4 MET 427: phi 32.6, psi -49.0 trans 
    39942 Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/4 VAL 427 
    39943 
    39944 > color #3/4:427 yellow
    39945 
    39946 > swapaa #3/4:428 GLN
    39947 
    39948 Using Dunbrack library 
    39949 mutadedModel #3/4 PHE 428: phi -49.2, psi -41.8 trans 
    39950 Applying GLN rotamer (chi angles: 67.6 -176.4 -42.5) to mutadedModel #3/4 GLN
    39951 428 
    39952 
    39953 > color #3/4:428 yellow
    39954 
    39955 > swapaa #3/4:429 ALA
    39956 
    39957 Using Dunbrack library 
    39958 Swapping mutadedModel #3/4 GLY 429 to ALA 
    39959 
    39960 > color #3/4:429 yellow
    39961 
    39962 > swapaa #3/4:430 GLY
    39963 
    39964 Using Dunbrack library 
    39965 Swapping mutadedModel #3/4 GLU 430 to GLY 
    39966 
    39967 > color #3/4:430 yellow
    39968 
    39969 > swapaa #3/4:431 LYS
    39970 
    39971 Using Dunbrack library 
    39972 mutadedModel #3/4 ALA 431: phi -98.1, psi 147.9 trans 
    39973 Applying LYS rotamer (chi angles: 66.8 -176.8 -70.4 -67.0) to mutadedModel
    39974 #3/4 LYS 431 
    39975 
    39976 > color #3/4:431 yellow
    39977 
    39978 > swapaa #3/4:432 ALA
    39979 
    39980 Using Dunbrack library 
    39981 Swapping mutadedModel #3/4 LEU 432 to ALA 
    39982 
    39983 > color #3/4:432 yellow
    39984 
    39985 > swapaa #3/4:435 ALA
    39986 
    39987 Using Dunbrack library 
    39988 Swapping mutadedModel #3/4 SER 435 to ALA 
    39989 
    39990 > color #3/4:435 yellow
    39991 
    39992 > swapaa #3/4:436 ASP
    39993 
    39994 Using Dunbrack library 
    39995 mutadedModel #3/4 ALA 436: phi -45.6, psi -35.9 trans 
    39996 Applying ASP rotamer (chi angles: -71.6 -14.7) to mutadedModel #3/4 ASP 436 
    39997 
    39998 > color #3/4:436 yellow
    39999 
    40000 > swapaa #3/4:438 THR
    40001 
    40002 Using Dunbrack library 
    40003 mutadedModel #3/4 GLU 438: phi -55.1, psi -42.4 trans 
    40004 Applying THR rotamer (chi angles: 58.7) to mutadedModel #3/4 THR 438 
    40005 
    40006 > color #3/4:438 yellow
    40007 
    40008 > swapaa #3/4:440 SER
    40009 
    40010 Using Dunbrack library 
    40011 mutadedModel #3/4 LEU 440: phi -67.5, psi -36.4 trans 
    40012 Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/4 SER 440 
    40013 
    40014 > color #3/4:440 yellow
    40015 
    40016 > swapaa #3/4:441 VAL
    40017 
    40018 Using Dunbrack library 
    40019 mutadedModel #3/4 ILE 441: phi -63.2, psi -40.6 trans 
    40020 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/4 VAL 441 
    40021 
    40022 > color #3/4:441 yellow
    40023 
    40024 > swapaa #3/4:443 LYS
    40025 
    40026 Using Dunbrack library 
    40027 mutadedModel #3/4 ALA 443: phi -58.8, psi -42.1 trans 
    40028 Applying LYS rotamer (chi angles: -70.5 179.2 -179.5 178.4) to mutadedModel
    40029 #3/4 LYS 443 
    40030 
    40031 > color #3/4:443 yellow
    40032 
    40033 > swapaa #3/4:444 LYS
    40034 
    40035 Using Dunbrack library 
    40036 mutadedModel #3/4 PHE 444: phi -73.1, psi -24.1 trans 
    40037 Applying LYS rotamer (chi angles: -69.0 174.6 69.9 176.2) to mutadedModel #3/4
    40038 LYS 444 
    40039 
    40040 > color #3/4:444 yellow
    40041 
    40042 > swapaa #3/4:445 MET
    40043 
    40044 Using Dunbrack library 
    40045 mutadedModel #3/4 GLN 445: phi -73.3, psi -45.2 trans 
    40046 Applying MET rotamer (chi angles: -68.9 174.2 70.0) to mutadedModel #3/4 MET
    40047 445 
    40048 
    40049 > color #3/4:445 yellow
    40050 
    40051 > swapaa #3/4:447 LYS
    40052 
    40053 Using Dunbrack library 
    40054 mutadedModel #3/4 ARG 447: phi -56.2, psi -54.3 trans 
    40055 Applying LYS rotamer (chi angles: -179.0 63.7 68.3 63.6) to mutadedModel #3/4
    40056 LYS 447 
    40057 
    40058 > color #3/4:447 yellow
    40059 
    40060 > swapaa #3/4:448 MET
    40061 
    40062 Using Dunbrack library 
    40063 mutadedModel #3/4 LEU 448: phi -56.0, psi -65.5 trans 
    40064 Applying MET rotamer (chi angles: -179.3 -83.0 -71.1) to mutadedModel #3/4 MET
    40065 448 
    40066 
    40067 > color #3/4:448 yellow
    40068 
    40069 > swapaa #3/4:449 GLN
    40070 
    40071 Using Dunbrack library 
    40072 mutadedModel #3/4 PHE 449: phi -38.3, psi -43.2 trans 
    40073 Applying GLN rotamer (chi angles: -70.0 176.9 64.0) to mutadedModel #3/4 GLN
    40074 449 
    40075 
    40076 > color #3/4:449 yellow
    40077 
    40078 > swapaa #3/4:451 MET
    40079 
    40080 Using Dunbrack library 
    40081 mutadedModel #3/4 PHE 451: phi -85.9, psi -38.6 trans 
    40082 Applying MET rotamer (chi angles: -67.0 -59.2 -68.4) to mutadedModel #3/4 MET
    40083 451 
    40084 
    40085 > color #3/4:451 yellow
    40086 
    40087 > swapaa #3/4:452 VAL
    40088 
    40089 Using Dunbrack library 
    40090 mutadedModel #3/4 THR 452: phi -63.9, psi -35.5 trans 
    40091 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/4 VAL 452 
    40092 
    40093 > color #3/4:452 yellow
    40094 
    40095 > swapaa #3/4:453 GLN
    40096 
    40097 Using Dunbrack library 
    40098 mutadedModel #3/4 LYS 453: phi -91.5, psi -22.7 trans 
    40099 Applying GLN rotamer (chi angles: -65.8 178.7 66.3) to mutadedModel #3/4 GLN
    40100 453 
    40101 
    40102 > color #3/4:453 yellow
    40103 
    40104 > swapaa #3/4:454 ASN
    40105 
    40106 Using Dunbrack library 
    40107 mutadedModel #3/4 LYS 454: phi -110.0, psi -31.6 trans 
    40108 Applying ASN rotamer (chi angles: -65.8 -94.4) to mutadedModel #3/4 ASN 454 
    40109 
    40110 > color #3/4:454 yellow
    40111 
    40112 > swapaa #3/4:455 ALA
    40113 
    40114 Using Dunbrack library 
    40115 Swapping mutadedModel #3/4 SER 455 to ALA 
    40116 
    40117 > color #3/4:455 yellow
    40118 
    40119 > swapaa #3/4:456 ASP
    40120 
    40121 Using Dunbrack library 
    40122 mutadedModel #3/4 ILE 456: phi -110.5, psi -56.2 trans 
    40123 Applying ASP rotamer (chi angles: -173.7 61.7) to mutadedModel #3/4 ASP 456 
    40124 
    40125 > color #3/4:456 yellow
    40126 
    40127 > swapaa #3/4:457 THR
    40128 
    40129 Using Dunbrack library 
    40130 mutadedModel #3/4 LEU 457: phi -84.6, psi 146.5 trans 
    40131 Applying THR rotamer (chi angles: 61.0) to mutadedModel #3/4 THR 457 
    40132 
    40133 > color #3/4:457 yellow
    40134 
    40135 > swapaa #3/4:460 ASP
    40136 
    40137 Using Dunbrack library 
    40138 mutadedModel #3/4 GLU 460: phi -85.2, psi -22.9 trans 
    40139 Applying ASP rotamer (chi angles: -65.3 -58.8) to mutadedModel #3/4 ASP 460 
    40140 
    40141 > color #3/4:460 yellow
    40142 
    40143 > swapaa #3/4:461 TYR
    40144 
    40145 Using Dunbrack library 
    40146 mutadedModel #3/4 TRP 461: phi -74.6, psi -30.1 trans 
    40147 Applying TYR rotamer (chi angles: -171.9 75.2) to mutadedModel #3/4 TYR 461 
    40148 
    40149 > color #3/4:461 yellow
    40150 
    40151 > swapaa #3/4:462 CYS
    40152 
    40153 Using Dunbrack library 
    40154 mutadedModel #3/4 GLU 462: phi -69.4, psi -29.2 trans 
    40155 Applying CYS rotamer (chi angles: 66.5) to mutadedModel #3/4 CYS 462 
    40156 
    40157 > color #3/4:462 yellow
    40158 
    40159 > swapaa #3/4:465 LEU
    40160 
    40161 Using Dunbrack library 
    40162 mutadedModel #3/4 ILE 465: phi -78.9, psi -29.7 trans 
    40163 Applying LEU rotamer (chi angles: -65.9 175.1) to mutadedModel #3/4 LEU 465 
    40164 
    40165 > color #3/4:465 yellow
    40166 
    40167 > swapaa #3/4:467 THR
    40168 
    40169 Using Dunbrack library 
    40170 mutadedModel #3/4 ARG 467: phi -98.0, psi -21.4 trans 
    40171 Applying THR rotamer (chi angles: 61.7) to mutadedModel #3/4 THR 467 
    40172 
    40173 > color #3/4:467 yellow
    40174 
    40175 > swapaa #3/4:468 CYS
    40176 
    40177 Using Dunbrack library 
    40178 mutadedModel #3/4 SER 468: phi -119.3, psi 23.4 trans 
    40179 Applying CYS rotamer (chi angles: -63.5) to mutadedModel #3/4 CYS 468 
    40180 
    40181 > color #3/4:468 yellow
    40182 
    40183 > swapaa #3/4:470 SER
    40184 
    40185 Using Dunbrack library 
    40186 mutadedModel #3/4 GLY 470: phi 28.1, psi -10.8 trans 
    40187 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 470 
    40188 
    40189 > color #3/4:470 yellow
    40190 
    40191 > swapaa #3/4:471 THR
    40192 
    40193 Using Dunbrack library 
    40194 mutadedModel #3/4 GLY 471: phi -172.0, psi 34.8 trans 
    40195 Applying THR rotamer (chi angles: 61.3) to mutadedModel #3/4 THR 471 
    40196 
    40197 > color #3/4:471 yellow
    40198 
    40199 > swapaa #3/4:472 ASP
    40200 
    40201 Using Dunbrack library 
    40202 mutadedModel #3/4 LYS 472: phi 9.6, psi -172.9 trans 
    40203 Applying ASP rotamer (chi angles: -69.4 -17.4) to mutadedModel #3/4 ASP 472 
    40204 
    40205 > color #3/4:472 yellow
    40206 
    40207 > swapaa #3/4:473 SER
    40208 
    40209 Using Dunbrack library 
    40210 mutadedModel #3/4 LYS 473: phi 0.8, psi 38.6 cis 
    40211 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 473 
    40212 
    40213 > color #3/4:473 yellow
    40214 
    40215 > swapaa #3/4:474 ASP
    40216 
    40217 Using Dunbrack library 
    40218 mutadedModel #3/4 SER 474: phi -9.6, psi -9.9 trans 
    40219 Applying ASP rotamer (chi angles: -69.4 40.5) to mutadedModel #3/4 ASP 474 
    40220 
    40221 > color #3/4:474 yellow
    40222 
    40223 > swapaa #3/4:475 SER
    40224 
    40225 Using Dunbrack library 
    40226 mutadedModel #3/4 GLY 475: phi -39.4, psi 70.9 trans 
    40227 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 475 
    40228 
    40229 > color #3/4:475 yellow
    40230 
    40231 > swapaa #3/4:477 LEU
    40232 
    40233 Using Dunbrack library 
    40234 mutadedModel #3/4 THR 477: phi -45.0, psi 112.1 trans 
    40235 Applying LEU rotamer (chi angles: -63.1 175.5) to mutadedModel #3/4 LEU 477 
    40236 
    40237 > color #3/4:477 yellow
    40238 
    40239 > swapaa #3/4:479 THR
    40240 
    40241 Using Dunbrack library 
    40242 mutadedModel #3/4 ILE 479: phi -72.9, psi 125.9 trans 
    40243 Applying THR rotamer (chi angles: 58.0) to mutadedModel #3/4 THR 479 
    40244 
    40245 > color #3/4:479 yellow
    40246 
    40247 > swapaa #3/4:480 SER
    40248 
    40249 Using Dunbrack library 
    40250 mutadedModel #3/4 THR 480: phi -113.0, psi -176.9 trans 
    40251 Applying SER rotamer (chi angles: -177.4) to mutadedModel #3/4 SER 480 
    40252 
    40253 > color #3/4:480 yellow
    40254 
    40255 > swapaa #3/4:481 LEU
    40256 
    40257 Using Dunbrack library 
    40258 mutadedModel #3/4 GLU 481: phi -82.8, psi -39.8 trans 
    40259 Applying LEU rotamer (chi angles: -174.4 -78.5) to mutadedModel #3/4 LEU 481 
    40260 
    40261 > color #3/4:481 yellow
    40262 
    40263 > swapaa #3/4:482 GLU
    40264 
    40265 Using Dunbrack library 
    40266 mutadedModel #3/4 ALA 482: phi -62.9, psi -46.4 trans 
    40267 Applying GLU rotamer (chi angles: -67.4 80.8 1.3) to mutadedModel #3/4 GLU 482 
    40268 
    40269 > color #3/4:482 yellow
    40270 
    40271 > swapaa #3/4:484 VAL
    40272 
    40273 Using Dunbrack library 
    40274 mutadedModel #3/4 LEU 484: phi -69.9, psi -33.6 trans 
    40275 Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 484 
    40276 
    40277 > color #3/4:484 yellow
    40278 
    40279 > swapaa #3/4:485 VAL
    40280 
    40281 Using Dunbrack library 
    40282 mutadedModel #3/4 SER 485: phi -74.3, psi -37.9 trans 
    40283 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/4 VAL 485 
    40284 
    40285 > color #3/4:485 yellow
    40286 
    40287 > swapaa #3/4:486 ASP
    40288 
    40289 Using Dunbrack library 
    40290 mutadedModel #3/4 GLU 486: phi -66.5, psi -38.4 trans 
    40291 Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/4 ASP 486 
    40292 
    40293 > color #3/4:486 yellow
    40294 
    40295 > swapaa #3/4:488 ILE
    40296 
    40297 Using Dunbrack library 
    40298 mutadedModel #3/4 LEU 488: phi -63.9, psi -28.6 trans 
    40299 Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/4 ILE 488 
    40300 
    40301 > color #3/4:488 yellow
    40302 
    40303 > swapaa #3/4:489 ASP
    40304 
    40305 Using Dunbrack library 
    40306 mutadedModel #3/4 GLU 489: phi -85.3, psi -24.6 trans 
    40307 Applying ASP rotamer (chi angles: -65.3 -30.9) to mutadedModel #3/4 ASP 489 
    40308 
    40309 > color #3/4:489 yellow
    40310 
    40311 > swapaa #3/4:490 SER
    40312 
    40313 Using Dunbrack library 
    40314 mutadedModel #3/4 ALA 490: phi -96.3, psi 24.4 trans 
    40315 Applying SER rotamer (chi angles: 61.3) to mutadedModel #3/4 SER 490 
    40316 
    40317 > color #3/4:490 yellow
    40318 
    40319 > swapaa #3/4:491 VAL
    40320 
    40321 Using Dunbrack library 
    40322 mutadedModel #3/4 ALA 491: phi -105.8, psi 134.6 trans 
    40323 Applying VAL rotamer (chi angles: 177.8) to mutadedModel #3/4 VAL 491 
    40324 
    40325 > color #3/4:491 yellow
    40326 
    40327 > swapaa #3/4:495 ASP
    40328 
    40329 Using Dunbrack library 
    40330 mutadedModel #3/4 GLU 495: phi -71.9, psi -33.3 trans 
    40331 Applying ASP rotamer (chi angles: -71.2 -42.3) to mutadedModel #3/4 ASP 495 
    40332 
    40333 > color #3/4:495 yellow
    40334 
    40335 > swapaa #3/4:497 LYS
    40336 
    40337 Using Dunbrack library 
    40338 mutadedModel #3/4 SER 497: phi -64.6, psi -36.5 trans 
    40339 Applying LYS rotamer (chi angles: 179.8 -96.2 -71.1 178.0) to mutadedModel
    40340 #3/4 LYS 497 
    40341 
    40342 > color #3/4:497 yellow
    40343 
    40344 > swapaa #3/4:500 TYR
    40345 
    40346 Using Dunbrack library 
    40347 mutadedModel #3/4 PHE 500: phi -76.9, psi -29.9 trans 
    40348 Applying TYR rotamer (chi angles: -70.3 105.9) to mutadedModel #3/4 TYR 500 
    40349 
    40350 > color #3/4:500 yellow
    40351 
    40352 > swapaa #3/4:502 LYS
    40353 
    40354 Using Dunbrack library 
    40355 mutadedModel #3/4 PHE 502: phi -74.7, psi -44.8 trans 
    40356 Applying LYS rotamer (chi angles: -66.3 -69.8 178.1 64.4) to mutadedModel #3/4
    40357 LYS 502 
    40358 
    40359 > color #3/4:502 yellow
    40360 
    40361 > swapaa #3/4:503 MET
    40362 
    40363 Using Dunbrack library 
    40364 mutadedModel #3/4 GLY 503: phi -73.8, psi -49.6 trans 
    40365 Applying MET rotamer (chi angles: -78.6 65.1 -104.2) to mutadedModel #3/4 MET
    40366 503 
    40367 
    40368 > color #3/4:503 yellow
    40369 
    40370 > swapaa #3/4:504 PHE
    40371 
    40372 Using Dunbrack library 
    40373 mutadedModel #3/4 LEU 504: phi -70.7, psi -10.3 trans 
    40374 Applying PHE rotamer (chi angles: -71.4 11.4) to mutadedModel #3/4 PHE 504 
    40375 
    40376 > color #3/4:504 yellow
    40377 
    40378 > swapaa #3/4:505 SER
    40379 
    40380 Using Dunbrack library 
    40381 mutadedModel #3/4 GLY 505: phi -43.7, psi -28.3 trans 
    40382 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 505 
    40383 
    40384 > color #3/4:505 yellow
    40385 
    40386 > swapaa #3/4:506 ASN
    40387 
    40388 Using Dunbrack library 
    40389 mutadedModel #3/4 VAL 506: phi -97.0, psi -21.7 trans 
    40390 Applying ASN rotamer (chi angles: 64.3 81.0) to mutadedModel #3/4 ASN 506 
    40391 
    40392 > color #3/4:506 yellow
    40393 
    40394 > swapaa #3/4:507 LYS
    40395 
    40396 Using Dunbrack library 
    40397 mutadedModel #3/4 THR 507: phi 60.9, psi 88.8 trans 
    40398 Applying LYS rotamer (chi angles: -178.7 67.8 176.2 178.5) to mutadedModel
    40399 #3/4 LYS 507 
    40400 
    40401 > color #3/4:507 yellow
    40402 
    40403 > swapaa #3/4:508 ALA
    40404 
    40405 Using Dunbrack library 
    40406 Swapping mutadedModel #3/4 THR 508 to ALA 
    40407 
    40408 > color #3/4:508 yellow
    40409 
    40410 > swapaa #3/4:509 SER
    40411 
    40412 Using Dunbrack library 
    40413 mutadedModel #3/4 ALA 509: phi -80.9, psi 140.5 trans 
    40414 Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/4 SER 509 
    40415 
    40416 > color #3/4:509 yellow
    40417 
    40418 > swapaa #3/4:510 LEU
    40419 
    40420 Using Dunbrack library 
    40421 mutadedModel #3/4 VAL 510: phi -109.5, psi 64.7 trans 
    40422 Applying LEU rotamer (chi angles: -79.3 -61.5) to mutadedModel #3/4 LEU 510 
    40423 
    40424 > color #3/4:510 yellow
    40425 
    40426 > swapaa #3/4:512 GLY
    40427 
    40428 Using Dunbrack library 
    40429 Swapping mutadedModel #3/4 MET 512 to GLY 
    40430 
    40431 > color #3/4:512 yellow
    40432 
    40433 > swapaa #3/4:513 HIS
    40434 
    40435 Using Dunbrack library 
    40436 mutadedModel #3/4 THR 513: phi -124.8, psi 168.7 trans 
    40437 Applying HIS rotamer (chi angles: -175.1 -141.6) to mutadedModel #3/4 HIS 513 
    40438 
    40439 > color #3/4:513 yellow
    40440 
    40441 > swapaa #3/4:515 GLU
    40442 
    40443 Using Dunbrack library 
    40444 mutadedModel #3/4 VAL 515: phi -61.0, psi 33.9 trans 
    40445 Applying GLU rotamer (chi angles: -177.7 65.6 21.3) to mutadedModel #3/4 GLU
    40446 515 
    40447 
    40448 > color #3/4:515 yellow
    40449 
    40450 > swapaa #3/4:516 MET
    40451 
    40452 Using Dunbrack library 
    40453 mutadedModel #3/4 ASP 516: phi -89.8, psi 84.6 trans 
    40454 Applying MET rotamer (chi angles: -176.7 179.9 -70.7) to mutadedModel #3/4 MET
    40455 516 
    40456 
    40457 > color #3/4:516 yellow
    40458 
    40459 > swapaa #3/4:517 LEU
    40460 
    40461 Using Dunbrack library 
    40462 mutadedModel #3/4 PHE 517: phi -92.6, psi 34.9 trans 
    40463 Applying LEU rotamer (chi angles: -62.1 176.6) to mutadedModel #3/4 LEU 517 
    40464 
    40465 > color #3/4:517 yellow
    40466 
    40467 > swapaa #3/4:518 CYS
    40468 
    40469 Using Dunbrack library 
    40470 mutadedModel #3/4 SER 518: phi -176.9, psi 162.1 trans 
    40471 Applying CYS rotamer (chi angles: -62.2) to mutadedModel #3/4 CYS 518 
    40472 
    40473 > color #3/4:518 yellow
    40474 
    40475 > swapaa #3/4:519 PHE
    40476 
    40477 Using Dunbrack library 
    40478 mutadedModel #3/4 SER 519: phi 169.4, psi 106.2 cis 
    40479 Applying PHE rotamer (chi angles: -67.0 70.3) to mutadedModel #3/4 PHE 519 
    40480 
    40481 > color #3/4:519 yellow
    40482 
    40483 > swapaa #3/4:520 PRO
    40484 
    40485 Using Dunbrack library 
    40486 mutadedModel #3/4 ALA 520: phi 5.7, psi 99.9 trans 
    40487 Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/4 PRO 520 
    40488 
    40489 > color #3/4:520 yellow
    40490 
    40491 > swapaa #3/4:521 SER
    40492 
    40493 Using Dunbrack library 
    40494 mutadedModel #3/4 VAL 521: phi -83.4, psi 41.6 trans 
    40495 Applying SER rotamer (chi angles: -64.2) to mutadedModel #3/4 SER 521 
    40496 
    40497 > color #3/4:521 yellow
    40498 
    40499 > swapaa #3/4:522 LEU
    40500 
    40501 Using Dunbrack library 
    40502 mutadedModel #3/4 SER 522: phi -117.5, psi none trans 
    40503 Applying LEU rotamer (chi angles: -179.2 63.0) to mutadedModel #3/4 LEU 522 
    40504 
    40505 > color #3/4:522 yellow
    40506 
    40507 > swapaa #3/4:524 GLN
    40508 
    40509 Using Dunbrack library 
    40510 mutadedModel #3/4 GLY 524: phi none, psi -63.1 trans 
    40511 Applying GLN rotamer (chi angles: -165.2 -77.7 -112.0) to mutadedModel #3/4
    40512 GLN 524 
    40513 
    40514 > color #3/4:524 yellow
    40515 
    40516 > swapaa #3/4:525 MET
    40517 
    40518 Using Dunbrack library 
    40519 mutadedModel #3/4 SER 525: phi -122.8, psi -58.7 trans 
    40520 Applying MET rotamer (chi angles: -67.7 176.0 70.1) to mutadedModel #3/4 MET
    40521 525 
    40522 
    40523 > color #3/4:525 yellow
    40524 
    40525 > swapaa #3/4:526 GLY
    40526 
    40527 Using Dunbrack library 
    40528 Swapping mutadedModel #3/4 LYS 526 to GLY 
    40529 
    40530 > color #3/4:526 yellow
    40531 
    40532 > select #3/FI
    40533 
    40534 3134 atoms, 3227 bonds, 371 residues, 1 model selected 
    40535 
    40536 > bond #3/FI:211@C #3/FI:212@N reasonable false
    40537 
    40538 Created 0 bonds 
    40539 
    40540 > bond #3/FI:212@C #3/FI:213@N reasonable false
    40541 
    40542 Created 0 bonds 
    40543 
    40544 > bond #3/FI:213@C #3/FI:214@N reasonable false
    40545 
    40546 Created 0 bonds 
    40547 
    40548 > bond #3/FI:214@C #3/FI:215@N reasonable false
    40549 
    40550 Created 0 bonds 
    40551 
    40552 > bond #3/FI:215@C #3/FI:216@N reasonable false
    40553 
    40554 Created 0 bonds 
    40555 
    40556 > bond #3/FI:216@C #3/FI:217@N reasonable false
    40557 
    40558 Created 0 bonds 
    40559 
    40560 > bond #3/FI:217@C #3/FI:218@N reasonable false
    40561 
    40562 Created 0 bonds 
    40563 
    40564 > bond #3/FI:218@C #3/FI:219@N reasonable false
    40565 
    40566 Created 0 bonds 
    40567 
    40568 > bond #3/FI:219@C #3/FI:220@N reasonable false
    40569 
    40570 Created 0 bonds 
    40571 
    40572 > bond #3/FI:220@C #3/FI:221@N reasonable false
    40573 
    40574 Created 0 bonds 
    40575 
    40576 > bond #3/FI:221@C #3/FI:222@N reasonable false
    40577 
    40578 Created 0 bonds 
    40579 
    40580 > bond #3/FI:222@C #3/FI:223@N reasonable false
    40581 
    40582 Created 0 bonds 
    40583 
    40584 > bond #3/FI:223@C #3/FI:224@N reasonable false
    40585 
    40586 Created 0 bonds 
    40587 
    40588 > bond #3/FI:224@C #3/FI:225@N reasonable false
    40589 
    40590 Created 0 bonds 
    40591 
    40592 > bond #3/FI:225@C #3/FI:226@N reasonable false
    40593 
    40594 Created 0 bonds 
    40595 
    40596 > bond #3/FI:226@C #3/FI:227@N reasonable false
    40597 
    40598 Created 0 bonds 
    40599 
    40600 > bond #3/FI:227@C #3/FI:228@N reasonable false
    40601 
    40602 Created 0 bonds 
    40603 
    40604 > bond #3/FI:228@C #3/FI:229@N reasonable false
    40605 
    40606 Created 0 bonds 
    40607 
    40608 > bond #3/FI:229@C #3/FI:230@N reasonable false
    40609 
    40610 Created 0 bonds 
    40611 
    40612 > bond #3/FI:230@C #3/FI:231@N reasonable false
    40613 
    40614 Created 0 bonds 
    40615 
    40616 > bond #3/FI:231@C #3/FI:232@N reasonable false
    40617 
    40618 Created 0 bonds 
    40619 
    40620 > bond #3/FI:232@C #3/FI:233@N reasonable false
    40621 
    40622 Created 0 bonds 
    40623 
    40624 > bond #3/FI:233@C #3/FI:234@N reasonable false
    40625 
    40626 Created 0 bonds 
    40627 
    40628 > bond #3/FI:234@C #3/FI:235@N reasonable false
    40629 
    40630 Created 0 bonds 
    40631 
    40632 > bond #3/FI:235@C #3/FI:236@N reasonable false
    40633 
    40634 Created 0 bonds 
    40635 
    40636 > bond #3/FI:236@C #3/FI:237@N reasonable false
    40637 
    40638 Created 0 bonds 
    40639 
    40640 > bond #3/FI:237@C #3/FI:238@N reasonable false
    40641 
    40642 Created 0 bonds 
    40643 
    40644 > bond #3/FI:238@C #3/FI:239@N reasonable false
    40645 
    40646 Created 0 bonds 
    40647 
    40648 > bond #3/FI:239@C #3/FI:240@N reasonable false
    40649 
    40650 Created 0 bonds 
    40651 
    40652 > bond #3/FI:240@C #3/FI:241@N reasonable false
    40653 
    40654 Created 0 bonds 
    40655 
    40656 > bond #3/FI:241@C #3/FI:242@N reasonable false
    40657 
    40658 Created 0 bonds 
    40659 
    40660 > bond #3/FI:242@C #3/FI:243@N reasonable false
    40661 
    40662 Created 0 bonds 
    40663 
    40664 > bond #3/FI:243@C #3/FI:244@N reasonable false
    40665 
    40666 Created 0 bonds 
    40667 
    40668 > bond #3/FI:244@C #3/FI:245@N reasonable false
    40669 
    40670 Created 0 bonds 
    40671 
    40672 > bond #3/FI:245@C #3/FI:246@N reasonable false
    40673 
    40674 Created 0 bonds 
    40675 
    40676 > bond #3/FI:246@C #3/FI:247@N reasonable false
    40677 
    40678 Created 0 bonds 
    40679 
    40680 > bond #3/FI:247@C #3/FI:248@N reasonable false
    40681 
    40682 Created 0 bonds 
    40683 
    40684 > bond #3/FI:248@C #3/FI:249@N reasonable false
    40685 
    40686 Created 0 bonds 
    40687 
    40688 > bond #3/FI:249@C #3/FI:250@N reasonable false
    40689 
    40690 Created 1 bond 
    40691 
    40692 > bond #3/FI:277@C #3/FI:278@N reasonable false
    40693 
    40694 Created 0 bonds 
    40695 
    40696 > bond #3/FI:278@C #3/FI:279@N reasonable false
    40697 
    40698 Created 0 bonds 
    40699 
    40700 > bond #3/FI:279@C #3/FI:280@N reasonable false
    40701 
    40702 Created 0 bonds 
    40703 
    40704 > bond #3/FI:280@C #3/FI:281@N reasonable false
    40705 
    40706 Created 0 bonds 
    40707 
    40708 > bond #3/FI:281@C #3/FI:282@N reasonable false
    40709 
    40710 Created 0 bonds 
    40711 
    40712 > bond #3/FI:282@C #3/FI:283@N reasonable false
    40713 
    40714 Created 0 bonds 
    40715 
    40716 > bond #3/FI:283@C #3/FI:284@N reasonable false
    40717 
    40718 Created 0 bonds 
    40719 
    40720 > bond #3/FI:284@C #3/FI:285@N reasonable false
    40721 
    40722 Created 0 bonds 
    40723 
    40724 > bond #3/FI:285@C #3/FI:286@N reasonable false
    40725 
    40726 Created 0 bonds 
    40727 
    40728 > bond #3/FI:286@C #3/FI:287@N reasonable false
    40729 
    40730 Created 0 bonds 
    40731 
    40732 > bond #3/FI:287@C #3/FI:288@N reasonable false
    40733 
    40734 Created 0 bonds 
    40735 
    40736 > bond #3/FI:288@C #3/FI:289@N reasonable false
    40737 
    40738 Created 0 bonds 
    40739 
    40740 > bond #3/FI:289@C #3/FI:290@N reasonable false
    40741 
    40742 Created 0 bonds 
    40743 
    40744 > bond #3/FI:290@C #3/FI:291@N reasonable false
    40745 
    40746 Created 0 bonds 
    40747 
    40748 > bond #3/FI:291@C #3/FI:292@N reasonable false
    40749 
    40750 Created 0 bonds 
    40751 
    40752 > bond #3/FI:292@C #3/FI:293@N reasonable false
    40753 
    40754 Created 0 bonds 
    40755 
    40756 > bond #3/FI:293@C #3/FI:294@N reasonable false
    40757 
    40758 Created 0 bonds 
    40759 
    40760 > bond #3/FI:294@C #3/FI:295@N reasonable false
    40761 
    40762 Created 0 bonds 
    40763 
    40764 > bond #3/FI:295@C #3/FI:296@N reasonable false
    40765 
    40766 Created 0 bonds 
    40767 
    40768 > bond #3/FI:296@C #3/FI:297@N reasonable false
    40769 
    40770 Created 0 bonds 
    40771 
    40772 > bond #3/FI:297@C #3/FI:298@N reasonable false
    40773 
    40774 Created 0 bonds 
    40775 
    40776 > bond #3/FI:298@C #3/FI:299@N reasonable false
    40777 
    40778 Created 0 bonds 
    40779 
    40780 > bond #3/FI:299@C #3/FI:300@N reasonable false
    40781 
    40782 Created 0 bonds 
    40783 
    40784 > bond #3/FI:300@C #3/FI:301@N reasonable false
    40785 
    40786 Created 0 bonds 
    40787 
    40788 > bond #3/FI:301@C #3/FI:302@N reasonable false
    40789 
    40790 Created 0 bonds 
    40791 
    40792 > bond #3/FI:302@C #3/FI:303@N reasonable false
    40793 
    40794 Created 0 bonds 
    40795 
    40796 > bond #3/FI:303@C #3/FI:304@N reasonable false
    40797 
    40798 Created 0 bonds 
    40799 
    40800 > bond #3/FI:304@C #3/FI:305@N reasonable false
    40801 
    40802 Created 0 bonds 
    40803 
    40804 > bond #3/FI:305@C #3/FI:306@N reasonable false
    40805 
    40806 Created 0 bonds 
    40807 
    40808 > bond #3/FI:306@C #3/FI:307@N reasonable false
    40809 
    40810 Created 0 bonds 
    40811 
    40812 > bond #3/FI:307@C #3/FI:308@N reasonable false
    40813 
    40814 Created 0 bonds 
    40815 
    40816 > bond #3/FI:308@C #3/FI:309@N reasonable false
    40817 
    40818 Created 0 bonds 
    40819 
    40820 > bond #3/FI:309@C #3/FI:310@N reasonable false
    40821 
    40822 Created 0 bonds 
    40823 
    40824 > bond #3/FI:310@C #3/FI:311@N reasonable false
    40825 
    40826 Created 0 bonds 
    40827 
    40828 > bond #3/FI:311@C #3/FI:312@N reasonable false
    40829 
    40830 Created 0 bonds 
    40831 
    40832 > bond #3/FI:312@C #3/FI:313@N reasonable false
    40833 
    40834 Created 1 bond 
    40835 
    40836 > bond #3/FI:210@C #3/FI:211@N reasonable false
    40837 
    40838 Created 1 bond 
    40839 
    40840 > bond #3/FI:313@C #3/FI:314@N reasonable false
    40841 
    40842 Created 0 bonds 
    40843 
    40844 > bond #3/FI:55@C #3/FI:56@N reasonable false
    40845 
    40846 Created 1 bond 
    40847 
    40848 > bond #3/FI:319@C #3/FI:320@N reasonable false
    40849 
    40850 Created 1 bond 
    40851 
    40852 > bond #3/FI:56@C #3/FI:57@N reasonable false
    40853 
    40854 Created 1 bond 
    40855 
    40856 > bond #3/FI:318@C #3/FI:319@N reasonable false
    40857 
    40858 Created 1 bond 
    40859 
    40860 > bond #3/FI:57@C #3/FI:58@N reasonable false
    40861 
    40862 Created 0 bonds 
    40863 
    40864 > bond #3/FI:58@C #3/FI:59@N reasonable false
    40865 
    40866 Created 0 bonds 
    40867 
    40868 > bond #3/FI:59@C #3/FI:60@N reasonable false
    40869 
    40870 Created 0 bonds 
    40871 
    40872 > bond #3/FI:60@C #3/FI:61@N reasonable false
    40873 
    40874 Created 0 bonds 
    40875 
    40876 > bond #3/FI:61@C #3/FI:62@N reasonable false
    40877 
    40878 Created 0 bonds 
    40879 
    40880 > bond #3/FI:62@C #3/FI:63@N reasonable false
    40881 
    40882 Created 0 bonds 
    40883 
    40884 > bond #3/FI:63@C #3/FI:64@N reasonable false
    40885 
    40886 Created 0 bonds 
    40887 
    40888 > bond #3/FI:64@C #3/FI:65@N reasonable false
    40889 
    40890 Created 0 bonds 
    40891 
    40892 > bond #3/FI:65@C #3/FI:66@N reasonable false
    40893 
    40894 Created 0 bonds 
    40895 
    40896 > bond #3/FI:66@C #3/FI:67@N reasonable false
    40897 
    40898 Created 0 bonds 
    40899 
    40900 > bond #3/FI:67@C #3/FI:68@N reasonable false
    40901 
    40902 Created 0 bonds 
    40903 
    40904 > bond #3/FI:68@C #3/FI:69@N reasonable false
    40905 
    40906 Created 0 bonds 
    40907 
    40908 > bond #3/FI:69@C #3/FI:70@N reasonable false
    40909 
    40910 Created 0 bonds 
    40911 
    40912 > bond #3/FI:70@C #3/FI:71@N reasonable false
    40913 
    40914 Created 0 bonds 
    40915 
    40916 > bond #3/FI:71@C #3/FI:72@N reasonable false
    40917 
    40918 Created 0 bonds 
    40919 
    40920 > bond #3/FI:72@C #3/FI:73@N reasonable false
    40921 
    40922 Created 0 bonds 
    40923 
    40924 > bond #3/FI:73@C #3/FI:74@N reasonable false
    40925 
    40926 Created 0 bonds 
    40927 
    40928 > bond #3/FI:74@C #3/FI:75@N reasonable false
    40929 
    40930 Created 0 bonds 
    40931 
    40932 > bond #3/FI:75@C #3/FI:76@N reasonable false
    40933 
    40934 Created 0 bonds 
    40935 
    40936 > bond #3/FI:76@C #3/FI:77@N reasonable false
    40937 
    40938 Created 0 bonds 
    40939 
    40940 > bond #3/FI:77@C #3/FI:78@N reasonable false
    40941 
    40942 Created 0 bonds 
    40943 
    40944 > bond #3/FI:78@C #3/FI:79@N reasonable false
    40945 
    40946 Created 0 bonds 
    40947 
    40948 > bond #3/FI:79@C #3/FI:80@N reasonable false
    40949 
    40950 Created 0 bonds 
    40951 
    40952 > bond #3/FI:80@C #3/FI:81@N reasonable false
    40953 
    40954 Created 0 bonds 
    40955 
    40956 > bond #3/FI:81@C #3/FI:82@N reasonable false
    40957 
    40958 Created 0 bonds 
    40959 
    40960 > bond #3/FI:82@C #3/FI:83@N reasonable false
    40961 
    40962 Created 0 bonds 
    40963 
    40964 > bond #3/FI:83@C #3/FI:84@N reasonable false
    40965 
    40966 Created 0 bonds 
    40967 
    40968 > bond #3/FI:84@C #3/FI:85@N reasonable false
    40969 
    40970 Created 0 bonds 
    40971 
    40972 > bond #3/FI:85@C #3/FI:86@N reasonable false
    40973 
    40974 Created 0 bonds 
    40975 
    40976 > bond #3/FI:86@C #3/FI:87@N reasonable false
    40977 
    40978 Created 0 bonds 
    40979 
    40980 > bond #3/FI:87@C #3/FI:88@N reasonable false
    40981 
    40982 Created 0 bonds 
    40983 
    40984 > bond #3/FI:88@C #3/FI:89@N reasonable false
    40985 
    40986 Created 0 bonds 
    40987 
    40988 > bond #3/FI:89@C #3/FI:90@N reasonable false
    40989 
    40990 Created 0 bonds 
    40991 
    40992 > bond #3/FI:90@C #3/FI:91@N reasonable false
    40993 
    40994 Created 0 bonds 
    40995 
    40996 > bond #3/FI:91@C #3/FI:92@N reasonable false
    40997 
    40998 Created 0 bonds 
    40999 
    41000 > bond #3/FI:92@C #3/FI:93@N reasonable false
    41001 
    41002 Created 0 bonds 
    41003 
    41004 > bond #3/FI:93@C #3/FI:94@N reasonable false
    41005 
    41006 Created 0 bonds 
    41007 
    41008 > bond #3/FI:94@C #3/FI:95@N reasonable false
    41009 
    41010 Created 0 bonds 
    41011 
    41012 > bond #3/FI:95@C #3/FI:96@N reasonable false
    41013 
    41014 Created 0 bonds 
    41015 
    41016 > bond #3/FI:96@C #3/FI:97@N reasonable false
    41017 
    41018 Created 0 bonds 
    41019 
    41020 > bond #3/FI:97@C #3/FI:98@N reasonable false
    41021 
    41022 Created 0 bonds 
    41023 
    41024 > bond #3/FI:98@C #3/FI:99@N reasonable false
    41025 
    41026 Created 0 bonds 
    41027 
    41028 > bond #3/FI:99@C #3/FI:100@N reasonable false
    41029 
    41030 Created 0 bonds 
    41031 
    41032 > bond #3/FI:100@C #3/FI:101@N reasonable false
    41033 
    41034 Created 0 bonds 
    41035 
    41036 > bond #3/FI:101@C #3/FI:102@N reasonable false
    41037 
    41038 Created 0 bonds 
    41039 
    41040 > bond #3/FI:102@C #3/FI:103@N reasonable false
    41041 
    41042 Created 0 bonds 
    41043 
    41044 > bond #3/FI:103@C #3/FI:104@N reasonable false
    41045 
    41046 Created 0 bonds 
    41047 
    41048 > bond #3/FI:104@C #3/FI:105@N reasonable false
    41049 
    41050 Created 0 bonds 
    41051 
    41052 > bond #3/FI:105@C #3/FI:106@N reasonable false
    41053 
    41054 Created 0 bonds 
    41055 
    41056 > bond #3/FI:106@C #3/FI:107@N reasonable false
    41057 
    41058 Created 0 bonds 
    41059 
    41060 > bond #3/FI:107@C #3/FI:108@N reasonable false
    41061 
    41062 Created 0 bonds 
    41063 
    41064 > bond #3/FI:108@C #3/FI:109@N reasonable false
    41065 
    41066 Created 0 bonds 
    41067 
    41068 > bond #3/FI:109@C #3/FI:110@N reasonable false
    41069 
    41070 Created 0 bonds 
    41071 
    41072 > bond #3/FI:110@C #3/FI:111@N reasonable false
    41073 
    41074 Created 0 bonds 
    41075 
    41076 > bond #3/FI:111@C #3/FI:112@N reasonable false
    41077 
    41078 Created 0 bonds 
    41079 
    41080 > bond #3/FI:112@C #3/FI:113@N reasonable false
    41081 
    41082 Created 0 bonds 
    41083 
    41084 > bond #3/FI:113@C #3/FI:114@N reasonable false
    41085 
    41086 Created 0 bonds 
    41087 
    41088 > bond #3/FI:114@C #3/FI:115@N reasonable false
    41089 
    41090 Created 0 bonds 
    41091 
    41092 > bond #3/FI:115@C #3/FI:116@N reasonable false
    41093 
    41094 Created 0 bonds 
    41095 
    41096 > bond #3/FI:116@C #3/FI:117@N reasonable false
    41097 
    41098 Created 0 bonds 
    41099 
    41100 > bond #3/FI:117@C #3/FI:118@N reasonable false
    41101 
    41102 Created 0 bonds 
    41103 
    41104 > bond #3/FI:118@C #3/FI:119@N reasonable false
    41105 
    41106 Created 0 bonds 
    41107 
    41108 > bond #3/FI:119@C #3/FI:120@N reasonable false
    41109 
    41110 Created 0 bonds 
    41111 
    41112 > bond #3/FI:120@C #3/FI:121@N reasonable false
    41113 
    41114 Created 0 bonds 
    41115 
    41116 > bond #3/FI:121@C #3/FI:122@N reasonable false
    41117 
    41118 Created 0 bonds 
    41119 
    41120 > bond #3/FI:122@C #3/FI:123@N reasonable false
    41121 
    41122 Created 0 bonds 
    41123 
    41124 > bond #3/FI:123@C #3/FI:124@N reasonable false
    41125 
    41126 Created 0 bonds 
    41127 
    41128 > bond #3/FI:124@C #3/FI:125@N reasonable false
    41129 
    41130 Created 0 bonds 
    41131 
    41132 > bond #3/FI:125@C #3/FI:126@N reasonable false
    41133 
    41134 Created 0 bonds 
    41135 
    41136 > bond #3/FI:126@C #3/FI:127@N reasonable false
    41137 
    41138 Created 0 bonds 
    41139 
    41140 > bond #3/FI:127@C #3/FI:128@N reasonable false
    41141 
    41142 Created 0 bonds 
    41143 
    41144 > bond #3/FI:128@C #3/FI:129@N reasonable false
    41145 
    41146 Created 0 bonds 
    41147 
    41148 > bond #3/FI:129@C #3/FI:130@N reasonable false
    41149 
    41150 Created 0 bonds 
    41151 
    41152 > bond #3/FI:130@C #3/FI:131@N reasonable false
    41153 
    41154 Created 0 bonds 
    41155 
    41156 > bond #3/FI:131@C #3/FI:132@N reasonable false
    41157 
    41158 Created 0 bonds 
    41159 
    41160 > bond #3/FI:132@C #3/FI:133@N reasonable false
    41161 
    41162 Created 0 bonds 
    41163 
    41164 > bond #3/FI:133@C #3/FI:134@N reasonable false
    41165 
    41166 Created 0 bonds 
    41167 
    41168 > bond #3/FI:134@C #3/FI:135@N reasonable false
    41169 
    41170 Created 0 bonds 
    41171 
    41172 > bond #3/FI:135@C #3/FI:136@N reasonable false
    41173 
    41174 Created 0 bonds 
    41175 
    41176 > bond #3/FI:136@C #3/FI:137@N reasonable false
    41177 
    41178 Created 0 bonds 
    41179 
    41180 > bond #3/FI:137@C #3/FI:138@N reasonable false
    41181 
    41182 Created 0 bonds 
    41183 
    41184 > bond #3/FI:138@C #3/FI:139@N reasonable false
    41185 
    41186 Created 0 bonds 
    41187 
    41188 > bond #3/FI:139@C #3/FI:140@N reasonable false
    41189 
    41190 Created 0 bonds 
    41191 
    41192 > bond #3/FI:140@C #3/FI:141@N reasonable false
    41193 
    41194 Created 0 bonds 
    41195 
    41196 > bond #3/FI:141@C #3/FI:142@N reasonable false
    41197 
    41198 Created 0 bonds 
    41199 
    41200 > bond #3/FI:142@C #3/FI:143@N reasonable false
    41201 
    41202 Created 0 bonds 
    41203 
    41204 > bond #3/FI:143@C #3/FI:144@N reasonable false
    41205 
    41206 Created 0 bonds 
    41207 
    41208 > bond #3/FI:144@C #3/FI:145@N reasonable false
    41209 
    41210 Created 0 bonds 
    41211 
    41212 > bond #3/FI:145@C #3/FI:146@N reasonable false
    41213 
    41214 Created 0 bonds 
    41215 
    41216 > bond #3/FI:146@C #3/FI:147@N reasonable false
    41217 
    41218 Created 0 bonds 
    41219 
    41220 > bond #3/FI:147@C #3/FI:148@N reasonable false
    41221 
    41222 Created 0 bonds 
    41223 
    41224 > bond #3/FI:148@C #3/FI:149@N reasonable false
    41225 
    41226 Created 0 bonds 
    41227 
    41228 > bond #3/FI:149@C #3/FI:150@N reasonable false
    41229 
    41230 Created 0 bonds 
    41231 
    41232 > bond #3/FI:150@C #3/FI:151@N reasonable false
    41233 
    41234 Created 0 bonds 
    41235 
    41236 > bond #3/FI:151@C #3/FI:152@N reasonable false
    41237 
    41238 Created 0 bonds 
    41239 
    41240 > bond #3/FI:152@C #3/FI:153@N reasonable false
    41241 
    41242 Created 0 bonds 
    41243 
    41244 > bond #3/FI:153@C #3/FI:154@N reasonable false
    41245 
    41246 Created 0 bonds 
    41247 
    41248 > bond #3/FI:154@C #3/FI:155@N reasonable false
    41249 
    41250 Created 0 bonds 
    41251 
    41252 > bond #3/FI:155@C #3/FI:156@N reasonable false
    41253 
    41254 Created 0 bonds 
    41255 
    41256 > bond #3/FI:156@C #3/FI:157@N reasonable false
    41257 
    41258 Created 0 bonds 
    41259 
    41260 > bond #3/FI:157@C #3/FI:158@N reasonable false
    41261 
    41262 Created 0 bonds 
    41263 
    41264 > bond #3/FI:158@C #3/FI:159@N reasonable false
    41265 
    41266 Created 0 bonds 
    41267 
    41268 > bond #3/FI:159@C #3/FI:160@N reasonable false
    41269 
    41270 Created 0 bonds 
    41271 
    41272 > bond #3/FI:160@C #3/FI:161@N reasonable false
    41273 
    41274 Created 0 bonds 
    41275 
    41276 > bond #3/FI:161@C #3/FI:162@N reasonable false
    41277 
    41278 Created 0 bonds 
    41279 
    41280 > bond #3/FI:162@C #3/FI:163@N reasonable false
    41281 
    41282 Created 0 bonds 
    41283 
    41284 > bond #3/FI:163@C #3/FI:164@N reasonable false
    41285 
    41286 Created 0 bonds 
    41287 
    41288 > bond #3/FI:164@C #3/FI:165@N reasonable false
    41289 
    41290 Created 0 bonds 
    41291 
    41292 > bond #3/FI:165@C #3/FI:166@N reasonable false
    41293 
    41294 Created 0 bonds 
    41295 
    41296 > bond #3/FI:166@C #3/FI:167@N reasonable false
    41297 
    41298 Created 0 bonds 
    41299 
    41300 > bond #3/FI:167@C #3/FI:168@N reasonable false
    41301 
    41302 Created 0 bonds 
    41303 
    41304 > bond #3/FI:168@C #3/FI:169@N reasonable false
    41305 
    41306 Created 0 bonds 
    41307 
    41308 > bond #3/FI:169@C #3/FI:170@N reasonable false
    41309 
    41310 Created 0 bonds 
    41311 
    41312 > bond #3/FI:170@C #3/FI:171@N reasonable false
    41313 
    41314 Created 0 bonds 
    41315 
    41316 > bond #3/FI:171@C #3/FI:172@N reasonable false
    41317 
    41318 Created 0 bonds 
    41319 
    41320 > bond #3/FI:172@C #3/FI:173@N reasonable false
    41321 
    41322 Created 0 bonds 
    41323 
    41324 > bond #3/FI:173@C #3/FI:174@N reasonable false
    41325 
    41326 Created 0 bonds 
    41327 
    41328 > bond #3/FI:174@C #3/FI:175@N reasonable false
    41329 
    41330 Created 0 bonds 
    41331 
    41332 > bond #3/FI:175@C #3/FI:176@N reasonable false
    41333 
    41334 Created 0 bonds 
    41335 
    41336 > bond #3/FI:176@C #3/FI:177@N reasonable false
    41337 
    41338 Created 0 bonds 
    41339 
    41340 > bond #3/FI:177@C #3/FI:178@N reasonable false
    41341 
    41342 Created 0 bonds 
    41343 
    41344 > bond #3/FI:178@C #3/FI:179@N reasonable false
    41345 
    41346 Created 0 bonds 
    41347 
    41348 > bond #3/FI:179@C #3/FI:180@N reasonable false
    41349 
    41350 Created 0 bonds 
    41351 
    41352 > bond #3/FI:180@C #3/FI:181@N reasonable false
    41353 
    41354 Created 0 bonds 
    41355 
    41356 > bond #3/FI:181@C #3/FI:182@N reasonable false
    41357 
    41358 Created 0 bonds 
    41359 
    41360 > bond #3/FI:182@C #3/FI:183@N reasonable false
    41361 
    41362 Created 0 bonds 
    41363 
    41364 > bond #3/FI:183@C #3/FI:184@N reasonable false
    41365 
    41366 Created 0 bonds 
    41367 
    41368 > bond #3/FI:184@C #3/FI:185@N reasonable false
    41369 
    41370 Created 0 bonds 
    41371 
    41372 > bond #3/FI:185@C #3/FI:186@N reasonable false
    41373 
    41374 Created 0 bonds 
    41375 
    41376 > bond #3/FI:186@C #3/FI:187@N reasonable false
    41377 
    41378 Created 0 bonds 
    41379 
    41380 > bond #3/FI:187@C #3/FI:188@N reasonable false
    41381 
    41382 Created 0 bonds 
    41383 
    41384 > bond #3/FI:188@C #3/FI:189@N reasonable false
    41385 
    41386 Created 0 bonds 
    41387 
    41388 > bond #3/FI:189@C #3/FI:190@N reasonable false
    41389 
    41390 Created 0 bonds 
    41391 
    41392 > bond #3/FI:190@C #3/FI:191@N reasonable false
    41393 
    41394 Created 0 bonds 
    41395 
    41396 > bond #3/FI:191@C #3/FI:192@N reasonable false
    41397 
    41398 Created 0 bonds 
    41399 
    41400 > bond #3/FI:192@C #3/FI:193@N reasonable false
    41401 
    41402 Created 0 bonds 
    41403 
    41404 > bond #3/FI:193@C #3/FI:194@N reasonable false
    41405 
    41406 Created 0 bonds 
    41407 
    41408 > bond #3/FI:194@C #3/FI:195@N reasonable false
    41409 
    41410 Created 0 bonds 
    41411 
    41412 > bond #3/FI:195@C #3/FI:196@N reasonable false
    41413 
    41414 Created 0 bonds 
    41415 
    41416 > bond #3/FI:196@C #3/FI:197@N reasonable false
    41417 
    41418 Created 0 bonds 
    41419 
    41420 > bond #3/FI:197@C #3/FI:198@N reasonable false
    41421 
    41422 Created 0 bonds 
    41423 
    41424 > bond #3/FI:198@C #3/FI:199@N reasonable false
    41425 
    41426 Created 0 bonds 
    41427 
    41428 > bond #3/FI:199@C #3/FI:200@N reasonable false
    41429 
    41430 Created 0 bonds 
    41431 
    41432 > bond #3/FI:200@C #3/FI:201@N reasonable false
    41433 
    41434 Created 0 bonds 
    41435 
    41436 > bond #3/FI:201@C #3/FI:202@N reasonable false
    41437 
    41438 Created 0 bonds 
    41439 
    41440 > bond #3/FI:202@C #3/FI:203@N reasonable false
    41441 
    41442 Created 0 bonds 
    41443 
    41444 > bond #3/FI:203@C #3/FI:204@N reasonable false
    41445 
    41446 Created 0 bonds 
    41447 
    41448 > bond #3/FI:204@C #3/FI:205@N reasonable false
    41449 
    41450 Created 0 bonds 
    41451 
    41452 > bond #3/FI:205@C #3/FI:206@N reasonable false
    41453 
    41454 Created 0 bonds 
    41455 
    41456 > bond #3/FI:206@C #3/FI:207@N reasonable false
    41457 
    41458 Created 0 bonds 
    41459 
    41460 > bond #3/FI:207@C #3/FI:208@N reasonable false
    41461 
    41462 Created 0 bonds 
    41463 
    41464 > bond #3/FI:208@C #3/FI:209@N reasonable false
    41465 
    41466 Created 0 bonds 
    41467 
    41468 > bond #3/FI:209@C #3/FI:210@N reasonable false
    41469 
    41470 Created 1 bond 
    41471 
    41472 > bond #3/FI:320@C #3/FI:321@N reasonable false
    41473 
    41474 Created 0 bonds 
    41475 
    41476 > bond #3/FI:321@C #3/FI:322@N reasonable false
    41477 
    41478 Created 0 bonds 
    41479 
    41480 > bond #3/FI:322@C #3/FI:323@N reasonable false
    41481 
    41482 Created 0 bonds 
    41483 
    41484 > bond #3/FI:323@C #3/FI:324@N reasonable false
    41485 
    41486 Created 0 bonds 
    41487 
    41488 > bond #3/FI:324@C #3/FI:325@N reasonable false
    41489 
    41490 Created 0 bonds 
    41491 
    41492 > bond #3/FI:325@C #3/FI:326@N reasonable false
    41493 
    41494 Created 0 bonds 
    41495 
    41496 > bond #3/FI:326@C #3/FI:327@N reasonable false
    41497 
    41498 Created 0 bonds 
    41499 
    41500 > bond #3/FI:327@C #3/FI:328@N reasonable false
    41501 
    41502 Created 0 bonds 
    41503 
    41504 > bond #3/FI:328@C #3/FI:329@N reasonable false
    41505 
    41506 Created 0 bonds 
    41507 
    41508 > bond #3/FI:329@C #3/FI:330@N reasonable false
    41509 
    41510 Created 0 bonds 
    41511 
    41512 > bond #3/FI:330@C #3/FI:331@N reasonable false
    41513 
    41514 Created 0 bonds 
    41515 
    41516 > bond #3/FI:331@C #3/FI:332@N reasonable false
    41517 
    41518 Created 0 bonds 
    41519 
    41520 > bond #3/FI:332@C #3/FI:333@N reasonable false
    41521 
    41522 Created 0 bonds 
    41523 
    41524 > bond #3/FI:333@C #3/FI:334@N reasonable false
    41525 
    41526 Created 0 bonds 
    41527 
    41528 > bond #3/FI:334@C #3/FI:335@N reasonable false
    41529 
    41530 Created 0 bonds 
    41531 
    41532 > bond #3/FI:335@C #3/FI:336@N reasonable false
    41533 
    41534 Created 0 bonds 
    41535 
    41536 > bond #3/FI:336@C #3/FI:337@N reasonable false
    41537 
    41538 Created 0 bonds 
    41539 
    41540 > bond #3/FI:337@C #3/FI:338@N reasonable false
    41541 
    41542 Created 0 bonds 
    41543 
    41544 > bond #3/FI:338@C #3/FI:339@N reasonable false
    41545 
    41546 Created 0 bonds 
    41547 
    41548 > bond #3/FI:339@C #3/FI:340@N reasonable false
    41549 
    41550 Created 0 bonds 
    41551 
    41552 > bond #3/FI:340@C #3/FI:341@N reasonable false
    41553 
    41554 Created 0 bonds 
    41555 
    41556 > bond #3/FI:341@C #3/FI:342@N reasonable false
    41557 
    41558 Created 0 bonds 
    41559 
    41560 > bond #3/FI:342@C #3/FI:343@N reasonable false
    41561 
    41562 Created 0 bonds 
    41563 
    41564 > bond #3/FI:343@C #3/FI:344@N reasonable false
    41565 
    41566 Created 0 bonds 
    41567 
    41568 > bond #3/FI:344@C #3/FI:345@N reasonable false
    41569 
    41570 Created 0 bonds 
    41571 
    41572 > bond #3/FI:345@C #3/FI:346@N reasonable false
    41573 
    41574 Created 0 bonds 
    41575 
    41576 > bond #3/FI:346@C #3/FI:347@N reasonable false
    41577 
    41578 Created 0 bonds 
    41579 
    41580 > bond #3/FI:347@C #3/FI:348@N reasonable false
    41581 
    41582 Created 0 bonds 
    41583 
    41584 > bond #3/FI:348@C #3/FI:349@N reasonable false
    41585 
    41586 Created 0 bonds 
    41587 
    41588 > bond #3/FI:349@C #3/FI:350@N reasonable false
    41589 
    41590 Created 0 bonds 
    41591 
    41592 > bond #3/FI:350@C #3/FI:351@N reasonable false
    41593 
    41594 Created 0 bonds 
    41595 
    41596 > bond #3/FI:351@C #3/FI:352@N reasonable false
    41597 
    41598 Created 0 bonds 
    41599 
    41600 > bond #3/FI:352@C #3/FI:353@N reasonable false
    41601 
    41602 Created 0 bonds 
    41603 
    41604 > bond #3/FI:353@C #3/FI:354@N reasonable false
    41605 
    41606 Created 0 bonds 
    41607 
    41608 > bond #3/FI:354@C #3/FI:355@N reasonable false
    41609 
    41610 Created 0 bonds 
    41611 
    41612 > bond #3/FI:355@C #3/FI:356@N reasonable false
    41613 
    41614 Created 0 bonds 
    41615 
    41616 > bond #3/FI:356@C #3/FI:357@N reasonable false
    41617 
    41618 Created 0 bonds 
    41619 
    41620 > bond #3/FI:357@C #3/FI:358@N reasonable false
    41621 
    41622 Created 0 bonds 
    41623 
    41624 > bond #3/FI:358@C #3/FI:359@N reasonable false
    41625 
    41626 Created 0 bonds 
    41627 
    41628 > bond #3/FI:359@C #3/FI:360@N reasonable false
    41629 
    41630 Created 0 bonds 
    41631 
    41632 > bond #3/FI:360@C #3/FI:361@N reasonable false
    41633 
    41634 Created 0 bonds 
    41635 
    41636 > bond #3/FI:361@C #3/FI:362@N reasonable false
    41637 
    41638 Created 0 bonds 
    41639 
    41640 > bond #3/FI:362@C #3/FI:363@N reasonable false
    41641 
    41642 Created 0 bonds 
    41643 
    41644 > bond #3/FI:363@C #3/FI:364@N reasonable false
    41645 
    41646 Created 0 bonds 
    41647 
    41648 > bond #3/FI:364@C #3/FI:365@N reasonable false
    41649 
    41650 Created 0 bonds 
    41651 
    41652 > bond #3/FI:365@C #3/FI:366@N reasonable false
    41653 
    41654 Created 0 bonds 
    41655 
    41656 > bond #3/FI:366@C #3/FI:367@N reasonable false
    41657 
    41658 Created 0 bonds 
    41659 
    41660 > bond #3/FI:367@C #3/FI:368@N reasonable false
    41661 
    41662 Created 0 bonds 
    41663 
    41664 > bond #3/FI:368@C #3/FI:369@N reasonable false
    41665 
    41666 Created 0 bonds 
    41667 
    41668 > bond #3/FI:369@C #3/FI:370@N reasonable false
    41669 
    41670 Created 0 bonds 
    41671 
    41672 > bond #3/FI:370@C #3/FI:371@N reasonable false
    41673 
    41674 Created 0 bonds 
    41675 
    41676 > bond #3/FI:371@C #3/FI:372@N reasonable false
    41677 
    41678 Created 0 bonds 
    41679 
    41680 > bond #3/FI:372@C #3/FI:373@N reasonable false
    41681 
    41682 Created 0 bonds 
    41683 
    41684 > bond #3/FI:373@C #3/FI:374@N reasonable false
    41685 
    41686 Created 0 bonds 
    41687 
    41688 > bond #3/FI:374@C #3/FI:375@N reasonable false
    41689 
    41690 Created 0 bonds 
    41691 
    41692 > bond #3/FI:2@C #3/FI:3@N reasonable false
    41693 
    41694 Created 0 bonds 
    41695 
    41696 > bond #3/FI:3@C #3/FI:4@N reasonable false
    41697 
    41698 Created 0 bonds 
    41699 
    41700 > bond #3/FI:4@C #3/FI:5@N reasonable false
    41701 
    41702 Created 0 bonds 
    41703 
    41704 > bond #3/FI:5@C #3/FI:6@N reasonable false
    41705 
    41706 Created 0 bonds 
    41707 
    41708 > bond #3/FI:6@C #3/FI:7@N reasonable false
    41709 
    41710 Created 0 bonds 
    41711 
    41712 > bond #3/FI:7@C #3/FI:8@N reasonable false
    41713 
    41714 Created 0 bonds 
    41715 
    41716 > bond #3/FI:8@C #3/FI:9@N reasonable false
    41717 
    41718 Created 0 bonds 
    41719 
    41720 > bond #3/FI:9@C #3/FI:10@N reasonable false
    41721 
    41722 Created 0 bonds 
    41723 
    41724 > bond #3/FI:10@C #3/FI:11@N reasonable false
    41725 
    41726 Created 0 bonds 
    41727 
    41728 > bond #3/FI:11@C #3/FI:12@N reasonable false
    41729 
    41730 Created 0 bonds 
    41731 
    41732 > bond #3/FI:12@C #3/FI:13@N reasonable false
    41733 
    41734 Created 0 bonds 
    41735 
    41736 > bond #3/FI:13@C #3/FI:14@N reasonable false
    41737 
    41738 Created 0 bonds 
    41739 
    41740 > bond #3/FI:14@C #3/FI:15@N reasonable false
    41741 
    41742 Created 0 bonds 
    41743 
    41744 > bond #3/FI:15@C #3/FI:16@N reasonable false
    41745 
    41746 Created 0 bonds 
    41747 
    41748 > bond #3/FI:16@C #3/FI:17@N reasonable false
    41749 
    41750 Created 0 bonds 
    41751 
    41752 > bond #3/FI:17@C #3/FI:18@N reasonable false
    41753 
    41754 Created 0 bonds 
    41755 
    41756 > bond #3/FI:18@C #3/FI:19@N reasonable false
    41757 
    41758 Created 0 bonds 
    41759 
    41760 > bond #3/FI:19@C #3/FI:20@N reasonable false
    41761 
    41762 Created 0 bonds 
    41763 
    41764 > bond #3/FI:20@C #3/FI:21@N reasonable false
    41765 
    41766 Created 0 bonds 
    41767 
    41768 > bond #3/FI:21@C #3/FI:22@N reasonable false
    41769 
    41770 Created 0 bonds 
    41771 
    41772 > bond #3/FI:22@C #3/FI:23@N reasonable false
    41773 
    41774 Created 0 bonds 
    41775 
    41776 > bond #3/FI:23@C #3/FI:24@N reasonable false
    41777 
    41778 Created 0 bonds 
    41779 
    41780 > bond #3/FI:24@C #3/FI:25@N reasonable false
    41781 
    41782 Created 0 bonds 
    41783 
    41784 > bond #3/FI:25@C #3/FI:26@N reasonable false
    41785 
    41786 Created 0 bonds 
    41787 
    41788 > bond #3/FI:26@C #3/FI:27@N reasonable false
    41789 
    41790 Created 0 bonds 
    41791 
    41792 > bond #3/FI:27@C #3/FI:28@N reasonable false
    41793 
    41794 Created 0 bonds 
    41795 
    41796 > bond #3/FI:28@C #3/FI:29@N reasonable false
    41797 
    41798 Created 0 bonds 
    41799 
    41800 > bond #3/FI:29@C #3/FI:30@N reasonable false
    41801 
    41802 Created 0 bonds 
    41803 
    41804 > bond #3/FI:30@C #3/FI:31@N reasonable false
    41805 
    41806 Created 0 bonds 
    41807 
    41808 > bond #3/FI:31@C #3/FI:32@N reasonable false
    41809 
    41810 Created 0 bonds 
    41811 
    41812 > bond #3/FI:32@C #3/FI:33@N reasonable false
    41813 
    41814 Created 0 bonds 
    41815 
    41816 > bond #3/FI:33@C #3/FI:34@N reasonable false
    41817 
    41818 Created 0 bonds 
    41819 
    41820 > bond #3/FI:34@C #3/FI:35@N reasonable false
    41821 
    41822 Created 0 bonds 
    41823 
    41824 > bond #3/FI:35@C #3/FI:36@N reasonable false
    41825 
    41826 Created 0 bonds 
    41827 
    41828 > bond #3/FI:36@C #3/FI:37@N reasonable false
    41829 
    41830 Created 0 bonds 
    41831 
    41832 > bond #3/FI:37@C #3/FI:38@N reasonable false
    41833 
    41834 Created 0 bonds 
    41835 
    41836 > bond #3/FI:38@C #3/FI:39@N reasonable false
    41837 
    41838 Created 0 bonds 
    41839 
    41840 > bond #3/FI:39@C #3/FI:40@N reasonable false
    41841 
    41842 Created 0 bonds 
    41843 
    41844 > bond #3/FI:40@C #3/FI:41@N reasonable false
    41845 
    41846 Created 0 bonds 
    41847 
    41848 > bond #3/FI:41@C #3/FI:42@N reasonable false
    41849 
    41850 Created 0 bonds 
    41851 
    41852 > bond #3/FI:42@C #3/FI:43@N reasonable false
    41853 
    41854 Created 0 bonds 
    41855 
    41856 > bond #3/FI:43@C #3/FI:44@N reasonable false
    41857 
    41858 Created 0 bonds 
    41859 
    41860 > bond #3/FI:44@C #3/FI:45@N reasonable false
    41861 
    41862 Created 0 bonds 
    41863 
    41864 > bond #3/FI:45@C #3/FI:46@N reasonable false
    41865 
    41866 Created 0 bonds 
    41867 
    41868 > bond #3/FI:46@C #3/FI:47@N reasonable false
    41869 
    41870 Created 0 bonds 
    41871 
    41872 > bond #3/FI:47@C #3/FI:48@N reasonable false
    41873 
    41874 Created 0 bonds 
    41875 
    41876 > bond #3/FI:48@C #3/FI:49@N reasonable false
    41877 
    41878 Created 0 bonds 
    41879 
    41880 > bond #3/FI:49@C #3/FI:50@N reasonable false
    41881 
    41882 Created 0 bonds 
    41883 
    41884 > bond #3/FI:50@C #3/FI:51@N reasonable false
    41885 
    41886 Created 0 bonds 
    41887 
    41888 > bond #3/FI:51@C #3/FI:52@N reasonable false
    41889 
    41890 Created 0 bonds 
    41891 
    41892 > bond #3/FI:52@C #3/FI:53@N reasonable false
    41893 
    41894 Created 0 bonds 
    41895 
    41896 > bond #3/FI:53@C #3/FI:54@N reasonable false
    41897 
    41898 Created 0 bonds 
    41899 
    41900 > bond #3/FI:54@C #3/FI:55@N reasonable false
    41901 
    41902 Created 1 bond 
    41903 
    41904 > bond #3/FI:250@C #3/FI:251@N reasonable false
    41905 
    41906 Created 0 bonds 
    41907 
    41908 > bond #3/FI:251@C #3/FI:252@N reasonable false
    41909 
    41910 Created 0 bonds 
    41911 
    41912 > bond #3/FI:252@C #3/FI:253@N reasonable false
    41913 
    41914 Created 0 bonds 
    41915 
    41916 > bond #3/FI:253@C #3/FI:254@N reasonable false
    41917 
    41918 Created 0 bonds 
    41919 
    41920 > bond #3/FI:254@C #3/FI:255@N reasonable false
    41921 
    41922 Created 0 bonds 
    41923 
    41924 > bond #3/FI:255@C #3/FI:256@N reasonable false
    41925 
    41926 Created 0 bonds 
    41927 
    41928 > bond #3/FI:256@C #3/FI:257@N reasonable false
    41929 
    41930 Created 0 bonds 
    41931 
    41932 > bond #3/FI:257@C #3/FI:258@N reasonable false
    41933 
    41934 Created 0 bonds 
    41935 
    41936 > bond #3/FI:258@C #3/FI:259@N reasonable false
    41937 
    41938 Created 0 bonds 
    41939 
    41940 > bond #3/FI:259@C #3/FI:260@N reasonable false
    41941 
    41942 Created 0 bonds 
    41943 
    41944 > bond #3/FI:260@C #3/FI:261@N reasonable false
    41945 
    41946 Created 0 bonds 
    41947 
    41948 > bond #3/FI:261@C #3/FI:262@N reasonable false
    41949 
    41950 Created 0 bonds 
    41951 
    41952 > bond #3/FI:262@C #3/FI:263@N reasonable false
    41953 
    41954 Created 0 bonds 
    41955 
    41956 > bond #3/FI:263@C #3/FI:264@N reasonable false
    41957 
    41958 Created 0 bonds 
    41959 
    41960 > bond #3/FI:264@C #3/FI:265@N reasonable false
    41961 
    41962 Created 0 bonds 
    41963 
    41964 > bond #3/FI:265@C #3/FI:266@N reasonable false
    41965 
    41966 Created 0 bonds 
    41967 
    41968 > bond #3/FI:266@C #3/FI:267@N reasonable false
    41969 
    41970 Created 0 bonds 
    41971 
    41972 > bond #3/FI:267@C #3/FI:268@N reasonable false
    41973 
    41974 Created 0 bonds 
    41975 
    41976 > bond #3/FI:268@C #3/FI:269@N reasonable false
    41977 
    41978 Created 0 bonds 
    41979 
    41980 > bond #3/FI:269@C #3/FI:270@N reasonable false
    41981 
    41982 Created 0 bonds 
    41983 
    41984 > bond #3/FI:270@C #3/FI:271@N reasonable false
    41985 
    41986 Created 0 bonds 
    41987 
    41988 > bond #3/FI:271@C #3/FI:272@N reasonable false
    41989 
    41990 Created 0 bonds 
    41991 
    41992 > bond #3/FI:272@C #3/FI:273@N reasonable false
    41993 
    41994 Created 0 bonds 
    41995 
    41996 > bond #3/FI:273@C #3/FI:274@N reasonable false
    41997 
    41998 Created 0 bonds 
    41999 
    42000 > bond #3/FI:274@C #3/FI:275@N reasonable false
    42001 
    42002 Created 0 bonds 
    42003 
    42004 > bond #3/FI:275@C #3/FI:276@N reasonable false
    42005 
    42006 Created 0 bonds 
    42007 
    42008 > bond #3/FI:276@C #3/FI:277@N reasonable false
    42009 
    42010 Created 1 bond 
    42011 
    42012 > swapaa #3/FI:2 PHE
    42013 
    42014 Using Dunbrack library 
    42015 mutadedModel #3/FI LYS 2: phi none, psi -19.1 trans 
    42016 Applying PHE rotamer (chi angles: -66.9 97.7) to mutadedModel #3/FI PHE 2 
    42017 
    42018 > color #3/FI:2 yellow
    42019 
    42020 > swapaa #3/FI:5 VAL
    42021 
    42022 Using Dunbrack library 
    42023 mutadedModel #3/FI ILE 5: phi -87.1, psi -28.3 trans 
    42024 Applying VAL rotamer (chi angles: 174.4) to mutadedModel #3/FI VAL 5 
    42025 
    42026 > color #3/FI:5 yellow
    42027 
    42028 > swapaa #3/FI:6 ARG
    42029 
    42030 Using Dunbrack library 
    42031 mutadedModel #3/FI TYR 6: phi -120.4, psi 50.1 trans 
    42032 Applying ARG rotamer (chi angles: 62.5 -177.2 -179.0 -178.8) to mutadedModel
    42033 #3/FI ARG 6 
    42034 
    42035 > color #3/FI:6 yellow
    42036 
    42037 > swapaa #3/FI:7 PHE
    42038 
    42039 Using Dunbrack library 
    42040 mutadedModel #3/FI HIS 7: phi -154.7, psi 129.7 trans 
    42041 Applying PHE rotamer (chi angles: -61.8 90.3) to mutadedModel #3/FI PHE 7 
    42042 
    42043 > color #3/FI:7 yellow
    42044 
    42045 > swapaa #3/FI:9 LEU
    42046 
    42047 Using Dunbrack library 
    42048 mutadedModel #3/FI GLU 9: phi -61.4, psi -41.8 trans 
    42049 Applying LEU rotamer (chi angles: -69.2 172.7) to mutadedModel #3/FI LEU 9 
    42050 
    42051 > color #3/FI:9 yellow
    42052 
    42053 > swapaa #3/FI:10 PHE
    42054 
    42055 Using Dunbrack library 
    42056 mutadedModel #3/FI LYS 10: phi -79.3, psi -18.7 trans 
    42057 Applying PHE rotamer (chi angles: -70.7 103.3) to mutadedModel #3/FI PHE 10 
    42058 
    42059 > color #3/FI:10 yellow
    42060 
    42061 > swapaa #3/FI:11 PHE
    42062 
    42063 Using Dunbrack library 
    42064 mutadedModel #3/FI TYR 11: phi -68.4, psi -39.4 trans 
    42065 Applying PHE rotamer (chi angles: -175.1 50.3) to mutadedModel #3/FI PHE 11 
    42066 
    42067 > color #3/FI:11 yellow
    42068 
    42069 > swapaa #3/FI:12 LEU
    42070 
    42071 Using Dunbrack library 
    42072 mutadedModel #3/FI ASN 12: phi -74.3, psi -30.7 trans 
    42073 Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/FI LEU 12 
    42074 
    42075 > color #3/FI:12 yellow
    42076 
    42077 > swapaa #3/FI:13 LEU
    42078 
    42079 Using Dunbrack library 
    42080 mutadedModel #3/FI GLU 13: phi -73.6, psi -43.4 trans 
    42081 Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/FI LEU 13 
    42082 
    42083 > color #3/FI:13 yellow
    42084 
    42085 > swapaa #3/FI:14 PHE
    42086 
    42087 Using Dunbrack library 
    42088 mutadedModel #3/FI TYR 14: phi -65.3, psi -44.1 trans 
    42089 Applying PHE rotamer (chi angles: -175.1 -13.5) to mutadedModel #3/FI PHE 14 
    42090 
    42091 > color #3/FI:14 yellow
    42092 
    42093 > swapaa #3/FI:17 LEU
    42094 
    42095 Using Dunbrack library 
    42096 mutadedModel #3/FI ASP 17: phi -120.7, psi -45.6 trans 
    42097 Applying LEU rotamer (chi angles: -62.6 176.7) to mutadedModel #3/FI LEU 17 
    42098 
    42099 > color #3/FI:17 yellow
    42100 
    42101 > swapaa #3/FI:18 CYS
    42102 
    42103 Using Dunbrack library 
    42104 mutadedModel #3/FI ILE 18: phi -96.1, psi -43.5 trans 
    42105 Applying CYS rotamer (chi angles: -64.1) to mutadedModel #3/FI CYS 18 
    42106 
    42107 > color #3/FI:18 yellow
    42108 
    42109 > swapaa #3/FI:19 CYS
    42110 
    42111 Using Dunbrack library 
    42112 mutadedModel #3/FI ASP 19: phi -102.0, psi 8.8 trans 
    42113 Applying CYS rotamer (chi angles: -176.9) to mutadedModel #3/FI CYS 19 
    42114 
    42115 > color #3/FI:19 yellow
    42116 
    42117 > swapaa #3/FI:20 LEU
    42118 
    42119 Using Dunbrack library 
    42120 mutadedModel #3/FI GLU 20: phi -50.6, psi 133.2 trans 
    42121 Applying LEU rotamer (chi angles: -175.5 67.0) to mutadedModel #3/FI LEU 20 
    42122 
    42123 > color #3/FI:20 yellow
    42124 
    42125 > swapaa #3/FI:21 LEU
    42126 
    42127 Using Dunbrack library 
    42128 mutadedModel #3/FI LYS 21: phi -105.9, psi 126.0 trans 
    42129 Applying LEU rotamer (chi angles: 177.1 65.8) to mutadedModel #3/FI LEU 21 
    42130 
    42131 > color #3/FI:21 yellow
    42132 
    42133 > swapaa #3/FI:25 CYS
    42134 
    42135 Using Dunbrack library 
    42136 mutadedModel #3/FI SER 25: phi -94.2, psi 56.4 trans 
    42137 Applying CYS rotamer (chi angles: 64.7) to mutadedModel #3/FI CYS 25 
    42138 
    42139 > color #3/FI:25 yellow
    42140 
    42141 > swapaa #3/FI:26 LEU
    42142 
    42143 Using Dunbrack library 
    42144 mutadedModel #3/FI GLN 26: phi -98.2, psi 144.4 trans 
    42145 Applying LEU rotamer (chi angles: -60.3 176.7) to mutadedModel #3/FI LEU 26 
    42146 
    42147 > color #3/FI:26 yellow
    42148 
    42149 > swapaa #3/FI:27 LEU
    42150 
    42151 Using Dunbrack library 
    42152 mutadedModel #3/FI ASN 27: phi -86.4, psi 173.1 trans 
    42153 Applying LEU rotamer (chi angles: -59.4 177.0) to mutadedModel #3/FI LEU 27 
    42154 
    42155 > color #3/FI:27 yellow
    42156 
    42157 > swapaa #3/FI:28 ARG
    42158 
    42159 Using Dunbrack library 
    42160 mutadedModel #3/FI ALA 28: phi -69.3, psi -15.1 trans 
    42161 Applying ARG rotamer (chi angles: -69.3 178.4 -179.9 174.0) to mutadedModel
    42162 #3/FI ARG 28 
    42163 
    42164 > color #3/FI:28 yellow
    42165 
    42166 > swapaa #3/FI:29 VAL
    42167 
    42168 Using Dunbrack library 
    42169 mutadedModel #3/FI ILE 29: phi -63.0, psi -12.6 trans 
    42170 Applying VAL rotamer (chi angles: -61.2) to mutadedModel #3/FI VAL 29 
    42171 
    42172 > color #3/FI:29 yellow
    42173 
    42174 > swapaa #3/FI:30 TYR
    42175 
    42176 Using Dunbrack library 
    42177 mutadedModel #3/FI ARG 30: phi -71.6, psi -26.2 trans 
    42178 Applying TYR rotamer (chi angles: -171.9 75.2) to mutadedModel #3/FI TYR 30 
    42179 
    42180 > color #3/FI:30 yellow
    42181 
    42182 > swapaa #3/FI:32 VAL
    42183 
    42184 Using Dunbrack library 
    42185 mutadedModel #3/FI THR 32: phi -84.3, psi -20.9 trans 
    42186 Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/FI VAL 32 
    42187 
    42188 > color #3/FI:32 yellow
    42189 
    42190 > swapaa #3/FI:35 SER
    42191 
    42192 Using Dunbrack library 
    42193 mutadedModel #3/FI ALA 35: phi -65.9, psi -53.6 trans 
    42194 Applying SER rotamer (chi angles: 63.0) to mutadedModel #3/FI SER 35 
    42195 
    42196 > color #3/FI:35 yellow
    42197 
    42198 > swapaa #3/FI:36 LEU
    42199 
    42200 Using Dunbrack library 
    42201 mutadedModel #3/FI PHE 36: phi -32.1, psi -80.2 trans 
    42202 Applying LEU rotamer (chi angles: -179.8 62.3) to mutadedModel #3/FI LEU 36 
    42203 
    42204 > color #3/FI:36 yellow
    42205 
    42206 > swapaa #3/FI:39 PHE
    42207 
    42208 Using Dunbrack library 
    42209 mutadedModel #3/FI TYR 39: phi -63.9, psi -37.4 trans 
    42210 Applying PHE rotamer (chi angles: -74.0 106.9) to mutadedModel #3/FI PHE 39 
    42211 
    42212 > color #3/FI:39 yellow
    42213 
    42214 > swapaa #3/FI:40 ILE
    42215 
    42216 Using Dunbrack library 
    42217 mutadedModel #3/FI LEU 40: phi -65.8, psi -42.6 trans 
    42218 Applying ILE rotamer (chi angles: -167.3 64.2) to mutadedModel #3/FI ILE 40 
    42219 
    42220 > color #3/FI:40 yellow
    42221 
    42222 > swapaa #3/FI:41 CYS
    42223 
    42224 Using Dunbrack library 
    42225 mutadedModel #3/FI GLU 41: phi -57.4, psi -45.7 trans 
    42226 Applying CYS rotamer (chi angles: 61.3) to mutadedModel #3/FI CYS 41 
    42227 
    42228 > color #3/FI:41 yellow
    42229 
    42230 > swapaa #3/FI:42 MET
    42231 
    42232 Using Dunbrack library 
    42233 mutadedModel #3/FI ASP 42: phi -65.5, psi -40.0 trans 
    42234 Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/FI MET
    42235 42 
    42236 
    42237 > color #3/FI:42 yellow
    42238 
    42239 > swapaa #3/FI:43 GLN
    42240 
    42241 Using Dunbrack library 
    42242 mutadedModel #3/FI LEU 43: phi -60.7, psi -58.1 trans 
    42243 Applying GLN rotamer (chi angles: -176.6 66.4 102.7) to mutadedModel #3/FI GLN
    42244 43 
    42245 
    42246 > color #3/FI:43 yellow
    42247 
    42248 > swapaa #3/FI:44 ILE
    42249 
    42250 Using Dunbrack library 
    42251 mutadedModel #3/FI LEU 44: phi -43.4, psi -26.3 trans 
    42252 Applying ILE rotamer (chi angles: -67.5 168.5) to mutadedModel #3/FI ILE 44 
    42253 
    42254 > color #3/FI:44 yellow
    42255 
    42256 > swapaa #3/FI:45 ILE
    42257 
    42258 Using Dunbrack library 
    42259 mutadedModel #3/FI LEU 45: phi -86.0, psi -33.7 trans 
    42260 Applying ILE rotamer (chi angles: -66.2 169.1) to mutadedModel #3/FI ILE 45 
    42261 
    42262 > color #3/FI:45 yellow
    42263 
    42264 > swapaa #3/FI:46 CYS
    42265 
    42266 Using Dunbrack library 
    42267 mutadedModel #3/FI LEU 46: phi -65.1, psi -20.8 trans 
    42268 Applying CYS rotamer (chi angles: -67.2) to mutadedModel #3/FI CYS 46 
    42269 
    42270 > color #3/FI:46 yellow
    42271 
    42272 > swapaa #3/FI:48 VAL
    42273 
    42274 Using Dunbrack library 
    42275 mutadedModel #3/FI ILE 48: phi -83.6, psi -31.2 trans 
    42276 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 48 
    42277 
    42278 > color #3/FI:48 yellow
    42279 
    42280 > swapaa #3/FI:54 PHE
    42281 
    42282 Using Dunbrack library 
    42283 mutadedModel #3/FI GLY 54: phi -132.7, psi 124.6 trans 
    42284 Applying PHE rotamer (chi angles: -177.5 102.3) to mutadedModel #3/FI PHE 54 
    42285 
    42286 > color #3/FI:54 yellow
    42287 
    42288 > swapaa #3/FI:56 SER
    42289 
    42290 Using Dunbrack library 
    42291 mutadedModel #3/FI ALA 56: phi -121.4, psi -126.0 cis 
    42292 Applying SER rotamer (chi angles: -63.8) to mutadedModel #3/FI SER 56 
    42293 
    42294 > color #3/FI:56 yellow
    42295 
    42296 > swapaa #3/FI:57 CYS
    42297 
    42298 Using Dunbrack library 
    42299 mutadedModel #3/FI VAL 57: phi -149.4, psi -143.5 trans 
    42300 Applying CYS rotamer (chi angles: 63.6) to mutadedModel #3/FI CYS 57 
    42301 
    42302 > color #3/FI:57 yellow
    42303 
    42304 > swapaa #3/FI:58 PHE
    42305 
    42306 Using Dunbrack library 
    42307 mutadedModel #3/FI TYR 58: phi -92.4, psi 152.0 trans 
    42308 Applying PHE rotamer (chi angles: -69.3 93.9) to mutadedModel #3/FI PHE 58 
    42309 
    42310 > color #3/FI:58 yellow
    42311 
    42312 > swapaa #3/FI:60 CYS
    42313 
    42314 Using Dunbrack library 
    42315 mutadedModel #3/FI ASP 60: phi -108.8, psi -15.1 trans 
    42316 Applying CYS rotamer (chi angles: 67.2) to mutadedModel #3/FI CYS 60 
    42317 
    42318 > color #3/FI:60 yellow
    42319 
    42320 > swapaa #3/FI:64 TYR
    42321 
    42322 Using Dunbrack library 
    42323 mutadedModel #3/FI ARG 64: phi -62.2, psi -17.9 trans 
    42324 Applying TYR rotamer (chi angles: -71.9 107.4) to mutadedModel #3/FI TYR 64 
    42325 
    42326 > color #3/FI:64 yellow
    42327 
    42328 > swapaa #3/FI:66 VAL
    42329 
    42330 Using Dunbrack library 
    42331 mutadedModel #3/FI THR 66: phi -60.8, psi -46.6 trans 
    42332 Applying VAL rotamer (chi angles: 171.3) to mutadedModel #3/FI VAL 66 
    42333 
    42334 > color #3/FI:66 yellow
    42335 
    42336 > swapaa #3/FI:67 LEU
    42337 
    42338 Using Dunbrack library 
    42339 mutadedModel #3/FI ILE 67: phi -73.6, psi -13.4 trans 
    42340 Applying LEU rotamer (chi angles: -174.1 -78.3) to mutadedModel #3/FI LEU 67 
    42341 
    42342 > color #3/FI:67 yellow
    42343 
    42344 > swapaa #3/FI:68 PHE
    42345 
    42346 Using Dunbrack library 
    42347 mutadedModel #3/FI TYR 68: phi -77.5, psi -11.6 trans 
    42348 Applying PHE rotamer (chi angles: -166.7 74.3) to mutadedModel #3/FI PHE 68 
    42349 
    42350 > color #3/FI:68 yellow
    42351 
    42352 > swapaa #3/FI:70 TRP
    42353 
    42354 Using Dunbrack library 
    42355 mutadedModel #3/FI TYR 70: phi -86.0, psi 0.4 trans 
    42356 Applying TRP rotamer (chi angles: -66.6 -16.1) to mutadedModel #3/FI TRP 70 
    42357 
    42358 > color #3/FI:70 yellow
    42359 
    42360 > swapaa #3/FI:71 ASP
    42361 
    42362 Using Dunbrack library 
    42363 mutadedModel #3/FI ASN 71: phi -95.0, psi 4.1 trans 
    42364 Applying ASP rotamer (chi angles: -67.2 -26.9) to mutadedModel #3/FI ASP 71 
    42365 
    42366 > color #3/FI:71 yellow
    42367 
    42368 > swapaa #3/FI:73 ASP
    42369 
    42370 Using Dunbrack library 
    42371 mutadedModel #3/FI GLU 73: phi -51.6, psi 106.4 trans 
    42372 Applying ASP rotamer (chi angles: 63.6 6.7) to mutadedModel #3/FI ASP 73 
    42373 
    42374 > color #3/FI:73 yellow
    42375 
    42376 > swapaa #3/FI:74 LEU
    42377 
    42378 Using Dunbrack library 
    42379 mutadedModel #3/FI GLU 74: phi 84.9, psi 29.9 trans 
    42380 Applying LEU rotamer (chi angles: -81.8 -61.3) to mutadedModel #3/FI LEU 74 
    42381 
    42382 > color #3/FI:74 yellow
    42383 
    42384 > swapaa #3/FI:77 VAL
    42385 
    42386 Using Dunbrack library 
    42387 mutadedModel #3/FI ASP 77: phi -82.2, psi -32.2 trans 
    42388 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 77 
    42389 
    42390 > color #3/FI:77 yellow
    42391 
    42392 > swapaa #3/FI:82 HIS
    42393 
    42394 Using Dunbrack library 
    42395 mutadedModel #3/FI CYS 82: phi -55.4, psi -61.2 trans 
    42396 Applying HIS rotamer (chi angles: 180.0 17.9) to mutadedModel #3/FI HIS 82 
    42397 
    42398 > color #3/FI:82 yellow
    42399 
    42400 > swapaa #3/FI:85 PHE
    42401 
    42402 Using Dunbrack library 
    42403 mutadedModel #3/FI TYR 85: phi -59.9, psi -39.4 trans 
    42404 Applying PHE rotamer (chi angles: -74.0 14.4) to mutadedModel #3/FI PHE 85 
    42405 
    42406 > color #3/FI:85 yellow
    42407 
    42408 > swapaa #3/FI:87 SER
    42409 
    42410 Using Dunbrack library 
    42411 mutadedModel #3/FI VAL 87: phi -78.6, psi -37.8 trans 
    42412 Applying SER rotamer (chi angles: 64.5) to mutadedModel #3/FI SER 87 
    42413 
    42414 > color #3/FI:87 yellow
    42415 
    42416 > swapaa #3/FI:93 LEU
    42417 
    42418 Using Dunbrack library 
    42419 mutadedModel #3/FI MET 93: phi -72.6, psi -48.1 trans 
    42420 Applying LEU rotamer (chi angles: 178.6 60.3) to mutadedModel #3/FI LEU 93 
    42421 
    42422 > color #3/FI:93 yellow
    42423 
    42424 > swapaa #3/FI:94 TYR
    42425 
    42426 Using Dunbrack library 
    42427 mutadedModel #3/FI PHE 94: phi -55.7, psi -21.2 trans 
    42428 Applying TYR rotamer (chi angles: -71.9 107.4) to mutadedModel #3/FI TYR 94 
    42429 
    42430 > color #3/FI:94 yellow
    42431 
    42432 > swapaa #3/FI:95 VAL
    42433 
    42434 Using Dunbrack library 
    42435 mutadedModel #3/FI GLU 95: phi -78.5, psi -25.7 trans 
    42436 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 95 
    42437 
    42438 > color #3/FI:95 yellow
    42439 
    42440 > swapaa #3/FI:96 HIS
    42441 
    42442 Using Dunbrack library 
    42443 mutadedModel #3/FI PHE 96: phi -88.7, psi -1.6 trans 
    42444 Applying HIS rotamer (chi angles: -173.6 67.7) to mutadedModel #3/FI HIS 96 
    42445 
    42446 > color #3/FI:96 yellow
    42447 
    42448 > swapaa #3/FI:99 LYS
    42449 
    42450 Using Dunbrack library 
    42451 mutadedModel #3/FI ARG 99: phi -63.6, psi -37.8 trans 
    42452 Applying LYS rotamer (chi angles: 177.8 -92.7 -85.3 47.8) to mutadedModel
    42453 #3/FI LYS 99 
    42454 
    42455 > color #3/FI:99 yellow
    42456 
    42457 > swapaa #3/FI:100 CYS
    42458 
    42459 Using Dunbrack library 
    42460 mutadedModel #3/FI VAL 100: phi -77.0, psi -22.7 trans 
    42461 Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/FI CYS 100 
    42462 
    42463 > color #3/FI:100 yellow
    42464 
    42465 > swapaa #3/FI:102 VAL
    42466 
    42467 Using Dunbrack library 
    42468 mutadedModel #3/FI GLU 102: phi -82.9, psi -23.3 trans 
    42469 Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/FI VAL 102 
    42470 
    42471 > color #3/FI:102 yellow
    42472 
    42473 > swapaa #3/FI:104 ILE
    42474 
    42475 Using Dunbrack library 
    42476 mutadedModel #3/FI ASN 104: phi 29.9, psi 67.1 trans 
    42477 Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 104 
    42478 
    42479 > color #3/FI:104 yellow
    42480 
    42481 > swapaa #3/FI:108 ASP
    42482 
    42483 Using Dunbrack library 
    42484 mutadedModel #3/FI ALA 108: phi -92.4, psi 6.2 trans 
    42485 Applying ASP rotamer (chi angles: 64.3 -2.2) to mutadedModel #3/FI ASP 108 
    42486 
    42487 > color #3/FI:108 yellow
    42488 
    42489 > swapaa #3/FI:109 THR
    42490 
    42491 Using Dunbrack library 
    42492 mutadedModel #3/FI ASP 109: phi -133.1, psi -94.7 trans 
    42493 Applying THR rotamer (chi angles: -60.7) to mutadedModel #3/FI THR 109 
    42494 
    42495 > color #3/FI:109 yellow
    42496 
    42497 > swapaa #3/FI:110 HIS
    42498 
    42499 Using Dunbrack library 
    42500 mutadedModel #3/FI ARG 110: phi -169.2, psi 145.6 trans 
    42501 Applying HIS rotamer (chi angles: -170.6 -106.0) to mutadedModel #3/FI HIS 110 
    42502 
    42503 > color #3/FI:110 yellow
    42504 
    42505 > swapaa #3/FI:111 ILE
    42506 
    42507 Using Dunbrack library 
    42508 mutadedModel #3/FI ASN 111: phi -78.9, psi 32.6 trans 
    42509 Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 111 
    42510 
    42511 > color #3/FI:111 yellow
    42512 
    42513 > swapaa #3/FI:113 VAL
    42514 
    42515 Using Dunbrack library 
    42516 mutadedModel #3/FI ASP 113: phi -78.4, psi -28.2 trans 
    42517 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 113 
    42518 
    42519 > color #3/FI:113 yellow
    42520 
    42521 > swapaa #3/FI:116 VAL
    42522 
    42523 Using Dunbrack library 
    42524 mutadedModel #3/FI ILE 116: phi -68.1, psi -45.0 trans 
    42525 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/FI VAL 116 
    42526 
    42527 > color #3/FI:116 yellow
    42528 
    42529 > swapaa #3/FI:119 ILE
    42530 
    42531 Using Dunbrack library 
    42532 mutadedModel #3/FI LYS 119: phi -66.9, psi -35.8 trans 
    42533 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/FI ILE 119 
    42534 
    42535 > color #3/FI:119 yellow
    42536 
    42537 > swapaa #3/FI:121 TYR
    42538 
    42539 Using Dunbrack library 
    42540 mutadedModel #3/FI PHE 121: phi -78.4, psi -31.2 trans 
    42541 Applying TYR rotamer (chi angles: -174.2 99.6) to mutadedModel #3/FI TYR 121 
    42542 
    42543 > color #3/FI:121 yellow
    42544 
    42545 > swapaa #3/FI:124 ILE
    42546 
    42547 Using Dunbrack library 
    42548 mutadedModel #3/FI LEU 124: phi -97.3, psi -34.1 trans 
    42549 Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/FI ILE 124 
    42550 
    42551 > color #3/FI:124 yellow
    42552 
    42553 > swapaa #3/FI:126 VAL
    42554 
    42555 Using Dunbrack library 
    42556 mutadedModel #3/FI GLU 126: phi -66.6, psi -41.7 trans 
    42557 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/FI VAL 126 
    42558 
    42559 > color #3/FI:126 yellow
    42560 
    42561 > swapaa #3/FI:127 ILE
    42562 
    42563 Using Dunbrack library 
    42564 mutadedModel #3/FI THR 127: phi -65.5, psi -38.9 trans 
    42565 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/FI ILE 127 
    42566 
    42567 > color #3/FI:127 yellow
    42568 
    42569 > swapaa #3/FI:128 GLY
    42570 
    42571 Using Dunbrack library 
    42572 Swapping mutadedModel #3/FI ALA 128 to GLY 
    42573 
    42574 > color #3/FI:128 yellow
    42575 
    42576 > swapaa #3/FI:130 ILE
    42577 
    42578 Using Dunbrack library 
    42579 mutadedModel #3/FI ASN 130: phi -57.3, psi -61.2 trans 
    42580 Applying ILE rotamer (chi angles: -67.4 168.1) to mutadedModel #3/FI ILE 130 
    42581 
    42582 > color #3/FI:130 yellow
    42583 
    42584 > swapaa #3/FI:132 TYR
    42585 
    42586 Using Dunbrack library 
    42587 mutadedModel #3/FI PHE 132: phi -69.0, psi -25.3 trans 
    42588 Applying TYR rotamer (chi angles: -171.9 50.3) to mutadedModel #3/FI TYR 132 
    42589 
    42590 > color #3/FI:132 yellow
    42591 
    42592 > swapaa #3/FI:135 PRO
    42593 
    42594 Using Dunbrack library 
    42595 mutadedModel #3/FI SER 135: phi -89.1, psi -10.4 trans 
    42596 Applying PRO rotamer (chi angles: 33.5 -36.3) to mutadedModel #3/FI PRO 135 
    42597 
    42598 > color #3/FI:135 yellow
    42599 
    42600 > swapaa #3/FI:136 CYS
    42601 
    42602 Using Dunbrack library 
    42603 mutadedModel #3/FI LEU 136: phi 53.2, psi 56.4 trans 
    42604 Applying CYS rotamer (chi angles: -62.0) to mutadedModel #3/FI CYS 136 
    42605 
    42606 > color #3/FI:136 yellow
    42607 
    42608 > swapaa #3/FI:138 MET
    42609 
    42610 Using Dunbrack library 
    42611 mutadedModel #3/FI PHE 138: phi -79.9, psi -29.4 trans 
    42612 Applying MET rotamer (chi angles: -67.1 177.9 70.9) to mutadedModel #3/FI MET
    42613 138 
    42614 
    42615 > color #3/FI:138 yellow
    42616 
    42617 > swapaa #3/FI:139 MET
    42618 
    42619 Using Dunbrack library 
    42620 mutadedModel #3/FI LEU 139: phi -77.5, psi -37.4 trans 
    42621 Applying MET rotamer (chi angles: -67.9 -58.6 -67.5) to mutadedModel #3/FI MET
    42622 139 
    42623 
    42624 > color #3/FI:139 yellow
    42625 
    42626 > swapaa #3/FI:140 SER
    42627 
    42628 Using Dunbrack library 
    42629 mutadedModel #3/FI ALA 140: phi -71.7, psi -38.4 trans 
    42630 Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/FI SER 140 
    42631 
    42632 > color #3/FI:140 yellow
    42633 
    42634 > swapaa #3/FI:141 TYR
    42635 
    42636 Using Dunbrack library 
    42637 mutadedModel #3/FI ARG 141: phi -71.1, psi -45.6 trans 
    42638 Applying TYR rotamer (chi angles: 179.6 77.9) to mutadedModel #3/FI TYR 141 
    42639 
    42640 > color #3/FI:141 yellow
    42641 
    42642 > swapaa #3/FI:145 THR
    42643 
    42644 Using Dunbrack library 
    42645 mutadedModel #3/FI VAL 145: phi -72.0, psi -38.3 trans 
    42646 Applying THR rotamer (chi angles: -60.5) to mutadedModel #3/FI THR 145 
    42647 
    42648 > color #3/FI:145 yellow
    42649 
    42650 > swapaa #3/FI:146 VAL
    42651 
    42652 Using Dunbrack library 
    42653 mutadedModel #3/FI ILE 146: phi -77.6, psi -44.9 trans 
    42654 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/FI VAL 146 
    42655 
    42656 > color #3/FI:146 yellow
    42657 
    42658 > swapaa #3/FI:149 ASN
    42659 
    42660 Using Dunbrack library 
    42661 mutadedModel #3/FI GLN 149: phi -58.8, psi -39.9 trans 
    42662 Applying ASN rotamer (chi angles: -73.2 -78.5) to mutadedModel #3/FI ASN 149 
    42663 
    42664 > color #3/FI:149 yellow
    42665 
    42666 > swapaa #3/FI:150 ILE
    42667 
    42668 Using Dunbrack library 
    42669 mutadedModel #3/FI LEU 150: phi -72.2, psi -28.1 trans 
    42670 Applying ILE rotamer (chi angles: -67.2 169.2) to mutadedModel #3/FI ILE 150 
    42671 
    42672 > color #3/FI:150 yellow
    42673 
    42674 > swapaa #3/FI:151 LEU
    42675 
    42676 Using Dunbrack library 
    42677 mutadedModel #3/FI ILE 151: phi -79.0, psi -26.4 trans 
    42678 Applying LEU rotamer (chi angles: -175.8 59.2) to mutadedModel #3/FI LEU 151 
    42679 
    42680 > color #3/FI:151 yellow
    42681 
    42682 > swapaa #3/FI:154 VAL
    42683 
    42684 Using Dunbrack library 
    42685 mutadedModel #3/FI GLU 154: phi -51.8, psi 123.5 trans 
    42686 Applying VAL rotamer (chi angles: 174.5) to mutadedModel #3/FI VAL 154 
    42687 
    42688 > color #3/FI:154 yellow
    42689 
    42690 > swapaa #3/FI:156 VAL
    42691 
    42692 Using Dunbrack library 
    42693 mutadedModel #3/FI ASP 156: phi -2.1, psi -7.0 trans 
    42694 Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/FI VAL 156 
    42695 
    42696 > color #3/FI:156 yellow
    42697 
    42698 > swapaa #3/FI:157 ILE
    42699 
    42700 Using Dunbrack library 
    42701 mutadedModel #3/FI LEU 157: phi -114.0, psi -35.9 trans 
    42702 Applying ILE rotamer (chi angles: -63.2 170.4) to mutadedModel #3/FI ILE 157 
    42703 
    42704 > color #3/FI:157 yellow
    42705 
    42706 > swapaa #3/FI:159 THR
    42707 
    42708 Using Dunbrack library 
    42709 mutadedModel #3/FI LEU 159: phi -73.4, psi -55.7 trans 
    42710 Applying THR rotamer (chi angles: -61.3) to mutadedModel #3/FI THR 159 
    42711 
    42712 > color #3/FI:159 yellow
    42713 
    42714 > swapaa #3/FI:160 TRP
    42715 
    42716 Using Dunbrack library 
    42717 mutadedModel #3/FI LYS 160: phi -48.3, psi -38.1 trans 
    42718 Applying TRP rotamer (chi angles: -71.7 109.5) to mutadedModel #3/FI TRP 160 
    42719 
    42720 > color #3/FI:160 yellow
    42721 
    42722 > swapaa #3/FI:162 CYS
    42723 
    42724 Using Dunbrack library 
    42725 mutadedModel #3/FI VAL 162: phi -65.5, psi -28.3 trans 
    42726 Applying CYS rotamer (chi angles: -69.3) to mutadedModel #3/FI CYS 162 
    42727 
    42728 > color #3/FI:162 yellow
    42729 
    42730 > swapaa #3/FI:165 ILE
    42731 
    42732 Using Dunbrack library 
    42733 mutadedModel #3/FI LEU 165: phi -85.8, psi -33.5 trans 
    42734 Applying ILE rotamer (chi angles: -66.2 169.1) to mutadedModel #3/FI ILE 165 
    42735 
    42736 > color #3/FI:165 yellow
    42737 
    42738 > swapaa #3/FI:166 TRP
    42739 
    42740 Using Dunbrack library 
    42741 mutadedModel #3/FI PHE 166: phi -78.3, psi -31.9 trans 
    42742 Applying TRP rotamer (chi angles: -70.5 14.0) to mutadedModel #3/FI TRP 166 
    42743 
    42744 > color #3/FI:166 yellow
    42745 
    42746 > swapaa #3/FI:169 GLU
    42747 
    42748 Using Dunbrack library 
    42749 mutadedModel #3/FI ASP 169: phi -53.1, psi 5.6 trans 
    42750 Applying GLU rotamer (chi angles: 66.3 -85.2 44.9) to mutadedModel #3/FI GLU
    42751 169 
    42752 
    42753 > color #3/FI:169 yellow
    42754 
    42755 > swapaa #3/FI:170 TYR
    42756 
    42757 Using Dunbrack library 
    42758 mutadedModel #3/FI PHE 170: phi -137.7, psi 152.2 trans 
    42759 Applying TYR rotamer (chi angles: -179.4 55.3) to mutadedModel #3/FI TYR 170 
    42760 
    42761 > color #3/FI:170 yellow
    42762 
    42763 > swapaa #3/FI:172 ASN
    42764 
    42765 Using Dunbrack library 
    42766 mutadedModel #3/FI THR 172: phi -105.6, psi -169.5 trans 
    42767 Applying ASN rotamer (chi angles: 63.9 104.5) to mutadedModel #3/FI ASN 172 
    42768 
    42769 > color #3/FI:172 yellow
    42770 
    42771 > swapaa #3/FI:173 ASP
    42772 
    42773 Using Dunbrack library 
    42774 mutadedModel #3/FI SER 173: phi -72.1, psi -28.9 trans 
    42775 Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/FI ASP 173 
    42776 
    42777 > color #3/FI:173 yellow
    42778 
    42779 > swapaa #3/FI:180 HIS
    42780 
    42781 Using Dunbrack library 
    42782 mutadedModel #3/FI PHE 180: phi -65.1, psi -40.5 trans 
    42783 Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/FI HIS 180 
    42784 
    42785 > color #3/FI:180 yellow
    42786 
    42787 > swapaa #3/FI:183 HIS
    42788 
    42789 Using Dunbrack library 
    42790 mutadedModel #3/FI ARG 183: phi -87.6, psi 4.1 trans 
    42791 Applying HIS rotamer (chi angles: -173.6 -25.6) to mutadedModel #3/FI HIS 183 
    42792 
    42793 > color #3/FI:183 yellow
    42794 
    42795 > swapaa #3/FI:184 VAL
    42796 
    42797 Using Dunbrack library 
    42798 mutadedModel #3/FI ILE 184: phi -110.0, psi -11.8 trans 
    42799 Applying VAL rotamer (chi angles: -61.0) to mutadedModel #3/FI VAL 184 
    42800 
    42801 > color #3/FI:184 yellow
    42802 
    42803 > swapaa #3/FI:185 LEU
    42804 
    42805 Using Dunbrack library 
    42806 mutadedModel #3/FI ILE 185: phi -88.0, psi -52.7 trans 
    42807 Applying LEU rotamer (chi angles: -86.5 61.2) to mutadedModel #3/FI LEU 185 
    42808 
    42809 > color #3/FI:185 yellow
    42810 
    42811 > swapaa #3/FI:193 VAL
    42812 
    42813 Using Dunbrack library 
    42814 mutadedModel #3/FI ILE 193: phi -78.1, psi -31.7 trans 
    42815 Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 193 
    42816 
    42817 > color #3/FI:193 yellow
    42818 
    42819 > swapaa #3/FI:194 ILE
    42820 
    42821 Using Dunbrack library 
    42822 mutadedModel #3/FI ASN 194: phi -69.4, psi -33.9 trans 
    42823 Applying ILE rotamer (chi angles: -67.2 169.2) to mutadedModel #3/FI ILE 194 
    42824 
    42825 > color #3/FI:194 yellow
    42826 
    42827 > swapaa #3/FI:195 PHE
    42828 
    42829 Using Dunbrack library 
    42830 mutadedModel #3/FI ILE 195: phi -68.7, psi -33.3 trans 
    42831 Applying PHE rotamer (chi angles: -73.1 132.8) to mutadedModel #3/FI PHE 195 
    42832 
    42833 > color #3/FI:195 yellow
    42834 
    42835 > swapaa #3/FI:196 MET
    42836 
    42837 Using Dunbrack library 
    42838 mutadedModel #3/FI SER 196: phi -65.1, psi -35.0 trans 
    42839 Applying MET rotamer (chi angles: -68.6 -56.5 -66.4) to mutadedModel #3/FI MET
    42840 196 
    42841 
    42842 > color #3/FI:196 yellow
    42843 
    42844 > swapaa #3/FI:197 HIS
    42845 
    42846 Using Dunbrack library 
    42847 mutadedModel #3/FI ASN 197: phi -70.3, psi -37.9 trans 
    42848 Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/FI HIS 197 
    42849 
    42850 > color #3/FI:197 yellow
    42851 
    42852 > swapaa #3/FI:200 CYS
    42853 
    42854 Using Dunbrack library 
    42855 mutadedModel #3/FI GLU 200: phi -70.1, psi -23.3 trans 
    42856 Applying CYS rotamer (chi angles: -67.2) to mutadedModel #3/FI CYS 200 
    42857 
    42858 > color #3/FI:200 yellow
    42859 
    42860 > swapaa #3/FI:202 HIS
    42861 
    42862 Using Dunbrack library 
    42863 mutadedModel #3/FI PHE 202: phi -70.7, psi -10.2 trans 
    42864 Applying HIS rotamer (chi angles: -68.6 81.6) to mutadedModel #3/FI HIS 202 
    42865 
    42866 > color #3/FI:202 yellow
    42867 
    42868 > swapaa #3/FI:203 TYR
    42869 
    42870 Using Dunbrack library 
    42871 mutadedModel #3/FI TRP 203: phi -89.8, psi -35.3 trans 
    42872 Applying TYR rotamer (chi angles: -177.8 20.3) to mutadedModel #3/FI TYR 203 
    42873 
    42874 > color #3/FI:203 yellow
    42875 
    42876 > swapaa #3/FI:204 PHE
    42877 
    42878 Using Dunbrack library 
    42879 mutadedModel #3/FI TYR 204: phi -123.3, psi -173.3 trans 
    42880 Applying PHE rotamer (chi angles: 63.6 91.8) to mutadedModel #3/FI PHE 204 
    42881 
    42882 > color #3/FI:204 yellow
    42883 
    42884 > swapaa #3/FI:205 MET
    42885 
    42886 Using Dunbrack library 
    42887 mutadedModel #3/FI LYS 205: phi -102.7, psi 124.1 trans 
    42888 Applying MET rotamer (chi angles: -178.3 179.3 -71.1) to mutadedModel #3/FI
    42889 MET 205 
    42890 
    42891 > color #3/FI:205 yellow
    42892 
    42893 > swapaa #3/FI:208 ASP
    42894 
    42895 Using Dunbrack library 
    42896 mutadedModel #3/FI THR 208: phi -108.2, psi 139.8 trans 
    42897 Applying ASP rotamer (chi angles: -174.8 -11.3) to mutadedModel #3/FI ASP 208 
    42898 
    42899 > color #3/FI:208 yellow
    42900 
    42901 > swapaa #3/FI:210 PHE
    42902 
    42903 Using Dunbrack library 
    42904 mutadedModel #3/FI TYR 210: phi 16.4, psi -11.7 trans 
    42905 Applying PHE rotamer (chi angles: -67.2 96.4) to mutadedModel #3/FI PHE 210 
    42906 
    42907 > color #3/FI:210 yellow
    42908 
    42909 > swapaa #3/FI:211 CYS
    42910 
    42911 Using Dunbrack library 
    42912 mutadedModel #3/FI THR 211: phi -1.1, psi 16.9 trans 
    42913 Applying CYS rotamer (chi angles: -177.4) to mutadedModel #3/FI CYS 211 
    42914 
    42915 > color #3/FI:211 yellow
    42916 
    42917 > swapaa #3/FI:214 PHE
    42918 
    42919 Using Dunbrack library 
    42920 mutadedModel #3/FI TYR 214: phi -69.7, psi 132.6 trans 
    42921 Applying PHE rotamer (chi angles: -177.5 75.8) to mutadedModel #3/FI PHE 214 
    42922 
    42923 > color #3/FI:214 yellow
    42924 
    42925 > swapaa #3/FI:216 PHE
    42926 
    42927 Using Dunbrack library 
    42928 mutadedModel #3/FI TYR 216: phi -107.4, psi 147.4 trans 
    42929 Applying PHE rotamer (chi angles: -66.1 90.5) to mutadedModel #3/FI PHE 216 
    42930 
    42931 > color #3/FI:216 yellow
    42932 
    42933 > swapaa #3/FI:217 TYR
    42934 
    42935 Using Dunbrack library 
    42936 mutadedModel #3/FI TRP 217: phi -42.0, psi -16.0 trans 
    42937 Applying TYR rotamer (chi angles: -72.0 108.3) to mutadedModel #3/FI TYR 217 
    42938 
    42939 > color #3/FI:217 yellow
    42940 
    42941 > swapaa #3/FI:218 CYS
    42942 
    42943 Using Dunbrack library 
    42944 mutadedModel #3/FI ASP 218: phi -85.4, psi -17.2 trans 
    42945 Applying CYS rotamer (chi angles: 67.4) to mutadedModel #3/FI CYS 218 
    42946 
    42947 > color #3/FI:218 yellow
    42948 
    42949 > swapaa #3/FI:220 ARG
    42950 
    42951 Using Dunbrack library 
    42952 mutadedModel #3/FI SER 220: phi -114.1, psi 147.4 trans 
    42953 Applying ARG rotamer (chi angles: 54.1 81.4 -95.3 165.3) to mutadedModel #3/FI
    42954 ARG 220 
    42955 
    42956 > color #3/FI:220 yellow
    42957 
    42958 > swapaa #3/FI:221 LEU
    42959 
    42960 Using Dunbrack library 
    42961 mutadedModel #3/FI ASN 221: phi -132.9, psi 144.4 trans 
    42962 Applying LEU rotamer (chi angles: -62.5 172.0) to mutadedModel #3/FI LEU 221 
    42963 
    42964 > color #3/FI:221 yellow
    42965 
    42966 > swapaa #3/FI:222 CYS
    42967 
    42968 Using Dunbrack library 
    42969 mutadedModel #3/FI VAL 222: phi -75.7, psi 156.2 trans 
    42970 Applying CYS rotamer (chi angles: -64.9) to mutadedModel #3/FI CYS 222 
    42971 
    42972 > color #3/FI:222 yellow
    42973 
    42974 > swapaa #3/FI:223 PHE
    42975 
    42976 Using Dunbrack library 
    42977 mutadedModel #3/FI ARG 223: phi -89.9, psi -2.1 trans 
    42978 Applying PHE rotamer (chi angles: -67.1 102.3) to mutadedModel #3/FI PHE 223 
    42979 
    42980 > color #3/FI:223 yellow
    42981 
    42982 > swapaa #3/FI:224 CYS
    42983 
    42984 Using Dunbrack library 
    42985 mutadedModel #3/FI SER 224: phi -97.9, psi 28.6 trans 
    42986 Applying CYS rotamer (chi angles: -177.2) to mutadedModel #3/FI CYS 224 
    42987 
    42988 > color #3/FI:224 yellow
    42989 
    42990 > swapaa #3/FI:225 MET
    42991 
    42992 Using Dunbrack library 
    42993 mutadedModel #3/FI ASN 225: phi -148.1, psi 12.4 trans 
    42994 Applying MET rotamer (chi angles: -134.1 -54.5 108.8) to mutadedModel #3/FI
    42995 MET 225 
    42996 
    42997 > color #3/FI:225 yellow
    42998 
    42999 > swapaa #3/FI:227 PHE
    43000 
    43001 Using Dunbrack library 
    43002 mutadedModel #3/FI HIS 227: phi -70.1, psi -13.0 trans 
    43003 Applying PHE rotamer (chi angles: -71.4 78.3) to mutadedModel #3/FI PHE 227 
    43004 
    43005 > color #3/FI:227 yellow
    43006 
    43007 > swapaa #3/FI:231 ASP
    43008 
    43009 Using Dunbrack library 
    43010 mutadedModel #3/FI ALA 231: phi -84.3, psi -30.5 trans 
    43011 Applying ASP rotamer (chi angles: -67.9 -19.5) to mutadedModel #3/FI ASP 231 
    43012 
    43013 > color #3/FI:231 yellow
    43014 
    43015 > swapaa #3/FI:232 MET
    43016 
    43017 Using Dunbrack library 
    43018 mutadedModel #3/FI LEU 232: phi -72.6, psi -42.7 trans 
    43019 Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/FI MET
    43020 232 
    43021 
    43022 > color #3/FI:232 yellow
    43023 
    43024 > swapaa #3/FI:234 LEU
    43025 
    43026 Using Dunbrack library 
    43027 mutadedModel #3/FI PHE 234: phi -72.6, psi -38.6 trans 
    43028 Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/FI LEU 234 
    43029 
    43030 > color #3/FI:234 yellow
    43031 
    43032 > swapaa #3/FI:236 PHE
    43033 
    43034 Using Dunbrack library 
    43035 mutadedModel #3/FI TYR 236: phi -82.2, psi -32.6 trans 
    43036 Applying PHE rotamer (chi angles: -71.7 103.3) to mutadedModel #3/FI PHE 236 
    43037 
    43038 > color #3/FI:236 yellow
    43039 
    43040 > swapaa #3/FI:238 ILE
    43041 
    43042 Using Dunbrack library 
    43043 mutadedModel #3/FI ASN 238: phi -77.6, psi -29.2 trans 
    43044 Applying ILE rotamer (chi angles: -66.7 169.1) to mutadedModel #3/FI ILE 238 
    43045 
    43046 > color #3/FI:238 yellow
    43047 
    43048 > swapaa #3/FI:239 LEU
    43049 
    43050 Using Dunbrack library 
    43051 mutadedModel #3/FI ASN 239: phi -75.4, psi -43.7 trans 
    43052 Applying LEU rotamer (chi angles: -66.5 174.5) to mutadedModel #3/FI LEU 239 
    43053 
    43054 > color #3/FI:239 yellow
    43055 
    43056 > swapaa #3/FI:241 TYR
    43057 
    43058 Using Dunbrack library 
    43059 mutadedModel #3/FI ILE 241: phi -82.0, psi -31.1 trans 
    43060 Applying TYR rotamer (chi angles: -70.3 133.1) to mutadedModel #3/FI TYR 241 
    43061 
    43062 > color #3/FI:241 yellow
    43063 
    43064 > swapaa #3/FI:242 VAL
    43065 
    43066 Using Dunbrack library 
    43067 mutadedModel #3/FI LEU 242: phi -71.0, psi -27.4 trans 
    43068 Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/FI VAL 242 
    43069 
    43070 > color #3/FI:242 yellow
    43071 
    43072 > swapaa #3/FI:243 VAL
    43073 
    43074 Using Dunbrack library 
    43075 mutadedModel #3/FI GLU 243: phi -62.2, psi -34.4 trans 
    43076 Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 243 
    43077 
    43078 > color #3/FI:243 yellow
    43079 
    43080 > swapaa #3/FI:247 PHE
    43081 
    43082 Using Dunbrack library 
    43083 mutadedModel #3/FI TYR 247: phi -112.0, psi -27.7 trans 
    43084 Applying PHE rotamer (chi angles: -64.2 103.3) to mutadedModel #3/FI PHE 247 
    43085 
    43086 > color #3/FI:247 yellow
    43087 
    43088 > swapaa #3/FI:248 ILE
    43089 
    43090 Using Dunbrack library 
    43091 mutadedModel #3/FI ASN 248: phi -117.7, psi -31.1 trans 
    43092 Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/FI ILE 248 
    43093 
    43094 > color #3/FI:248 yellow
    43095 
    43096 > swapaa #3/FI:249 ASN
    43097 
    43098 Using Dunbrack library 
    43099 mutadedModel #3/FI ILE 249: phi -96.8, psi 32.9 trans 
    43100 Applying ASN rotamer (chi angles: -161.5 -52.3) to mutadedModel #3/FI ASN 249 
    43101 
    43102 > color #3/FI:249 yellow
    43103 
    43104 > swapaa #3/FI:250 TRP
    43105 
    43106 Using Dunbrack library 
    43107 mutadedModel #3/FI GLY 250: phi -122.2, psi 87.3 trans 
    43108 Applying TRP rotamer (chi angles: 60.5 167.2) to mutadedModel #3/FI TRP 250 
    43109 
    43110 > color #3/FI:250 yellow
    43111 
    43112 > swapaa #3/FI:251 TYR
    43113 
    43114 Using Dunbrack library 
    43115 mutadedModel #3/FI ARG 251: phi -68.3, psi -57.7 trans 
    43116 Applying TYR rotamer (chi angles: 69.3 87.8) to mutadedModel #3/FI TYR 251 
    43117 
    43118 > color #3/FI:251 yellow
    43119 
    43120 > swapaa #3/FI:253 VAL
    43121 
    43122 Using Dunbrack library 
    43123 mutadedModel #3/FI ASP 253: phi -99.8, psi -53.1 trans 
    43124 Applying VAL rotamer (chi angles: 70.6) to mutadedModel #3/FI VAL 253 
    43125 
    43126 > color #3/FI:253 yellow
    43127 
    43128 > swapaa #3/FI:255 HIS
    43129 
    43130 Using Dunbrack library 
    43131 mutadedModel #3/FI PHE 255: phi -90.6, psi -173.3 trans 
    43132 Applying HIS rotamer (chi angles: -64.8 -71.6) to mutadedModel #3/FI HIS 255 
    43133 
    43134 > color #3/FI:255 yellow
    43135 
    43136 > swapaa #3/FI:256 GLU
    43137 
    43138 Using Dunbrack library 
    43139 mutadedModel #3/FI ASN 256: phi -77.3, psi -24.7 trans 
    43140 Applying GLU rotamer (chi angles: 70.5 -84.2 17.3) to mutadedModel #3/FI GLU
    43141 256 
    43142 
    43143 > color #3/FI:256 yellow
    43144 
    43145 > swapaa #3/FI:257 GLU
    43146 
    43147 Using Dunbrack library 
    43148 mutadedModel #3/FI THR 257: phi -79.7, psi -22.0 trans 
    43149 Applying GLU rotamer (chi angles: -64.0 82.6 1.3) to mutadedModel #3/FI GLU
    43150 257 
    43151 
    43152 > color #3/FI:257 yellow
    43153 
    43154 > swapaa #3/FI:258 SER
    43155 
    43156 Using Dunbrack library 
    43157 mutadedModel #3/FI ALA 258: phi -75.6, psi -10.3 trans 
    43158 Applying SER rotamer (chi angles: -64.5) to mutadedModel #3/FI SER 258 
    43159 
    43160 > color #3/FI:258 yellow
    43161 
    43162 > swapaa #3/FI:259 TRP
    43163 
    43164 Using Dunbrack library 
    43165 mutadedModel #3/FI PHE 259: phi -109.9, psi 12.9 trans 
    43166 Applying TRP rotamer (chi angles: -65.1 103.4) to mutadedModel #3/FI TRP 259 
    43167 
    43168 > color #3/FI:259 yellow
    43169 
    43170 > swapaa #3/FI:261 ILE
    43171 
    43172 Using Dunbrack library 
    43173 mutadedModel #3/FI ASN 261: phi -63.6, psi 177.1 trans 
    43174 Applying ILE rotamer (chi angles: 59.4 85.1) to mutadedModel #3/FI ILE 261 
    43175 
    43176 > color #3/FI:261 yellow
    43177 
    43178 > swapaa #3/FI:263 ASP
    43179 
    43180 Using Dunbrack library 
    43181 mutadedModel #3/FI ALA 263: phi -105.1, psi 111.3 trans 
    43182 Applying ASP rotamer (chi angles: -177.3 -35.7) to mutadedModel #3/FI ASP 263 
    43183 
    43184 > color #3/FI:263 yellow
    43185 
    43186 > swapaa #3/FI:264 THR
    43187 
    43188 Using Dunbrack library 
    43189 mutadedModel #3/FI ILE 264: phi -70.4, psi -19.9 trans 
    43190 Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/FI THR 264 
    43191 
    43192 > color #3/FI:264 yellow
    43193 
    43194 > swapaa #3/FI:265 LEU
    43195 
    43196 Using Dunbrack library 
    43197 mutadedModel #3/FI ASN 265: phi -101.1, psi -21.4 trans 
    43198 Applying LEU rotamer (chi angles: -61.2 176.9) to mutadedModel #3/FI LEU 265 
    43199 
    43200 > color #3/FI:265 yellow
    43201 
    43202 > swapaa #3/FI:266 LYS
    43203 
    43204 Using Dunbrack library 
    43205 mutadedModel #3/FI THR 266: phi -105.6, psi 127.0 trans 
    43206 Applying LYS rotamer (chi angles: -177.7 178.5 -176.1 -64.2) to mutadedModel
    43207 #3/FI LYS 266 
    43208 
    43209 > color #3/FI:266 yellow
    43210 
    43211 > swapaa #3/FI:267 THR
    43212 
    43213 Using Dunbrack library 
    43214 mutadedModel #3/FI ALA 267: phi -77.4, psi 143.3 trans 
    43215 Applying THR rotamer (chi angles: 59.4) to mutadedModel #3/FI THR 267 
    43216 
    43217 > color #3/FI:267 yellow
    43218 
    43219 > swapaa #3/FI:268 SER
    43220 
    43221 Using Dunbrack library 
    43222 mutadedModel #3/FI GLY 268: phi -35.5, psi 98.9 trans 
    43223 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/FI SER 268 
    43224 
    43225 > color #3/FI:268 yellow
    43226 
    43227 > swapaa #3/FI:269 ASP
    43228 
    43229 Using Dunbrack library 
    43230 mutadedModel #3/FI ALA 269: phi 1.0, psi 112.0 trans 
    43231 Applying ASP rotamer (chi angles: -173.5 81.5) to mutadedModel #3/FI ASP 269 
    43232 
    43233 > color #3/FI:269 yellow
    43234 
    43235 > swapaa #3/FI:270 LYS
    43236 
    43237 Using Dunbrack library 
    43238 mutadedModel #3/FI ALA 270: phi -28.7, psi -15.0 trans 
    43239 Applying LYS rotamer (chi angles: 69.2 -86.7 -174.9 -178.1) to mutadedModel
    43240 #3/FI LYS 270 
    43241 
    43242 > color #3/FI:270 yellow
    43243 
    43244 > swapaa #3/FI:271 ILE
    43245 
    43246 Using Dunbrack library 
    43247 mutadedModel #3/FI THR 271: phi -136.8, psi 108.0 trans 
    43248 Applying ILE rotamer (chi angles: -58.6 172.2) to mutadedModel #3/FI ILE 271 
    43249 
    43250 > color #3/FI:271 yellow
    43251 
    43252 > swapaa #3/FI:272 LEU
    43253 
    43254 Using Dunbrack library 
    43255 mutadedModel #3/FI ILE 272: phi -93.8, psi 106.2 trans 
    43256 mutadedModel #3/FI ILE 272 has 2 equal-value rotamers; choosing one
    43257 arbitrarily. 
    43258 Applying LEU rotamer (chi angles: 61.3 80.6) to mutadedModel #3/FI LEU 272 
    43259 
    43260 > color #3/FI:272 yellow
    43261 
    43262 > swapaa #3/FI:273 PRO
    43263 
    43264 Using Dunbrack library 
    43265 mutadedModel #3/FI VAL 273: phi -120.7, psi 143.1 trans 
    43266 Applying PRO rotamer (chi angles: 29.2 -34.5) to mutadedModel #3/FI PRO 273 
    43267 
    43268 > color #3/FI:273 yellow
    43269 
    43270 > swapaa #3/FI:274 GLU
    43271 
    43272 Using Dunbrack library 
    43273 mutadedModel #3/FI VAL 274: phi -78.3, psi 168.7 trans 
    43274 Applying GLU rotamer (chi angles: -63.8 -66.6 -31.8) to mutadedModel #3/FI GLU
    43275 274 
    43276 
    43277 > color #3/FI:274 yellow
    43278 
    43279 > swapaa #3/FI:275 TRP
    43280 
    43281 Using Dunbrack library 
    43282 mutadedModel #3/FI GLU 275: phi -57.9, psi -134.7 trans 
    43283 Applying TRP rotamer (chi angles: -178.3 58.2) to mutadedModel #3/FI TRP 275 
    43284 
    43285 > color #3/FI:275 yellow
    43286 
    43287 > swapaa #3/FI:276 PHE
    43288 
    43289 Using Dunbrack library 
    43290 mutadedModel #3/FI SER 276: phi 176.5, psi 21.4 trans 
    43291 Applying PHE rotamer (chi angles: -178.6 77.3) to mutadedModel #3/FI PHE 276 
    43292 
    43293 > color #3/FI:276 yellow
    43294 
    43295 > swapaa #3/FI:280 LEU
    43296 
    43297 Using Dunbrack library 
    43298 mutadedModel #3/FI PHE 280: phi -78.5, psi -55.9 trans 
    43299 Applying LEU rotamer (chi angles: -68.2 172.9) to mutadedModel #3/FI LEU 280 
    43300 
    43301 > color #3/FI:280 yellow
    43302 
    43303 > swapaa #3/FI:281 PHE
    43304 
    43305 Using Dunbrack library 
    43306 mutadedModel #3/FI TRP 281: phi -51.0, psi -70.1 trans 
    43307 Applying PHE rotamer (chi angles: -73.7 -16.1) to mutadedModel #3/FI PHE 281 
    43308 
    43309 > color #3/FI:281 yellow
    43310 
    43311 > swapaa #3/FI:283 PHE
    43312 
    43313 Using Dunbrack library 
    43314 mutadedModel #3/FI TYR 283: phi -73.4, psi -45.4 trans 
    43315 Applying PHE rotamer (chi angles: -73.2 131.8) to mutadedModel #3/FI PHE 283 
    43316 
    43317 > color #3/FI:283 yellow
    43318 
    43319 > swapaa #3/FI:284 LEU
    43320 
    43321 Using Dunbrack library 
    43322 mutadedModel #3/FI GLU 284: phi -56.0, psi -27.1 trans 
    43323 Applying LEU rotamer (chi angles: -68.4 173.8) to mutadedModel #3/FI LEU 284 
    43324 
    43325 > color #3/FI:284 yellow
    43326 
    43327 > swapaa #3/FI:289 ASP
    43328 
    43329 Using Dunbrack library 
    43330 mutadedModel #3/FI THR 289: phi -95.6, psi 133.3 trans 
    43331 Applying ASP rotamer (chi angles: -175.8 -13.3) to mutadedModel #3/FI ASP 289 
    43332 
    43333 > color #3/FI:289 yellow
    43334 
    43335 > swapaa #3/FI:290 LYS
    43336 
    43337 Using Dunbrack library 
    43338 mutadedModel #3/FI SER 290: phi -62.4, psi -31.8 trans 
    43339 Applying LYS rotamer (chi angles: -62.9 -72.4 100.3 78.3) to mutadedModel
    43340 #3/FI LYS 290 
    43341 
    43342 > color #3/FI:290 yellow
    43343 
    43344 > swapaa #3/FI:292 THR
    43345 
    43346 Using Dunbrack library 
    43347 mutadedModel #3/FI PRO 292: phi -55.7, psi -43.0 trans 
    43348 Applying THR rotamer (chi angles: 58.7) to mutadedModel #3/FI THR 292 
    43349 
    43350 > color #3/FI:292 yellow
    43351 
    43352 > swapaa #3/FI:295 LEU
    43353 
    43354 Using Dunbrack library 
    43355 mutadedModel #3/FI GLN 295: phi -80.7, psi -37.2 trans 
    43356 Applying LEU rotamer (chi angles: -177.5 59.5) to mutadedModel #3/FI LEU 295 
    43357 
    43358 > color #3/FI:295 yellow
    43359 
    43360 > swapaa #3/FI:296 LEU
    43361 
    43362 Using Dunbrack library 
    43363 mutadedModel #3/FI HIS 296: phi -69.1, psi -39.8 trans 
    43364 Applying LEU rotamer (chi angles: -177.4 58.8) to mutadedModel #3/FI LEU 296 
    43365 
    43366 > color #3/FI:296 yellow
    43367 
    43368 > swapaa #3/FI:297 MET
    43369 
    43370 Using Dunbrack library 
    43371 mutadedModel #3/FI LYS 297: phi -66.2, psi -35.1 trans 
    43372 Applying MET rotamer (chi angles: -179.2 -179.3 71.4) to mutadedModel #3/FI
    43373 MET 297 
    43374 
    43375 > color #3/FI:297 yellow
    43376 
    43377 > swapaa #3/FI:303 SER
    43378 
    43379 Using Dunbrack library 
    43380 mutadedModel #3/FI THR 303: phi -77.2, psi -32.3 trans 
    43381 Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/FI SER 303 
    43382 
    43383 > color #3/FI:303 yellow
    43384 
    43385 > swapaa #3/FI:307 PHE
    43386 
    43387 Using Dunbrack library 
    43388 mutadedModel #3/FI ARG 307: phi -66.2, psi -25.4 trans 
    43389 Applying PHE rotamer (chi angles: 72.6 143.7) to mutadedModel #3/FI PHE 307 
    43390 
    43391 > color #3/FI:307 yellow
    43392 
    43393 > swapaa #3/FI:308 ILE
    43394 
    43395 Using Dunbrack library 
    43396 mutadedModel #3/FI LEU 308: phi -62.1, psi -40.6 trans 
    43397 Applying ILE rotamer (chi angles: -68.1 168.5) to mutadedModel #3/FI ILE 308 
    43398 
    43399 > color #3/FI:308 yellow
    43400 
    43401 > swapaa #3/FI:310 ASN
    43402 
    43403 Using Dunbrack library 
    43404 mutadedModel #3/FI ASP 310: phi -114.2, psi 64.1 trans 
    43405 Applying ASN rotamer (chi angles: -65.4 -60.4) to mutadedModel #3/FI ASN 310 
    43406 
    43407 > color #3/FI:310 yellow
    43408 
    43409 > swapaa #3/FI:311 CYS
    43410 
    43411 Using Dunbrack library 
    43412 mutadedModel #3/FI THR 311: phi -104.9, psi 118.0 trans 
    43413 Applying CYS rotamer (chi angles: -63.0) to mutadedModel #3/FI CYS 311 
    43414 
    43415 > color #3/FI:311 yellow
    43416 
    43417 > swapaa #3/FI:312 ILE
    43418 
    43419 Using Dunbrack library 
    43420 mutadedModel #3/FI VAL 312: phi -118.6, psi 132.5 trans 
    43421 Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/FI ILE 312 
    43422 
    43423 > color #3/FI:312 yellow
    43424 
    43425 > swapaa #3/FI:313 LEU
    43426 
    43427 Using Dunbrack library 
    43428 mutadedModel #3/FI TRP 313: phi 7.5, psi 74.9 trans 
    43429 Applying LEU rotamer (chi angles: -179.8 62.5) to mutadedModel #3/FI LEU 313 
    43430 
    43431 > color #3/FI:313 yellow
    43432 
    43433 > swapaa #3/FI:314 TRP
    43434 
    43435 Using Dunbrack library 
    43436 mutadedModel #3/FI LEU 314: phi -58.2, psi none trans 
    43437 Applying TRP rotamer (chi angles: -67.4 100.3) to mutadedModel #3/FI TRP 314 
    43438 
    43439 > color #3/FI:314 yellow
    43440 
    43441 > swapaa #3/FI:318 CYS
    43442 
    43443 Using Dunbrack library 
    43444 mutadedModel #3/FI PRO 318: phi none, psi 11.1 trans 
    43445 Applying CYS rotamer (chi angles: -64.3) to mutadedModel #3/FI CYS 318 
    43446 
    43447 > color #3/FI:318 yellow
    43448 
    43449 > swapaa #3/FI:319 ARG
    43450 
    43451 Using Dunbrack library 
    43452 mutadedModel #3/FI TRP 319: phi 50.2, psi -171.7 cis 
    43453 Applying ARG rotamer (chi angles: -176.3 177.1 177.4 86.7) to mutadedModel
    43454 #3/FI ARG 319 
    43455 
    43456 > color #3/FI:319 yellow
    43457 
    43458 > swapaa #3/FI:320 SER
    43459 
    43460 Using Dunbrack library 
    43461 mutadedModel #3/FI THR 320: phi -44.4, psi -17.9 cis 
    43462 Applying SER rotamer (chi angles: -65.8) to mutadedModel #3/FI SER 320 
    43463 
    43464 > color #3/FI:320 yellow
    43465 
    43466 > swapaa #3/FI:321 SER
    43467 
    43468 Using Dunbrack library 
    43469 mutadedModel #3/FI PHE 321: phi -129.6, psi 22.6 trans 
    43470 Applying SER rotamer (chi angles: -61.6) to mutadedModel #3/FI SER 321 
    43471 
    43472 > color #3/FI:321 yellow
    43473 
    43474 > swapaa #3/FI:322 LEU
    43475 
    43476 Using Dunbrack library 
    43477 mutadedModel #3/FI SER 322: phi -125.5, psi 160.5 trans 
    43478 Applying LEU rotamer (chi angles: -60.1 171.7) to mutadedModel #3/FI LEU 322 
    43479 
    43480 > color #3/FI:322 yellow
    43481 
    43482 > swapaa #3/FI:323 LEU
    43483 
    43484 Using Dunbrack library 
    43485 mutadedModel #3/FI HIS 323: phi -106.8, psi 157.2 trans 
    43486 Applying LEU rotamer (chi angles: -73.2 -57.6) to mutadedModel #3/FI LEU 323 
    43487 
    43488 > color #3/FI:323 yellow
    43489 
    43490 > swapaa #3/FI:324 TRP
    43491 
    43492 Using Dunbrack library 
    43493 mutadedModel #3/FI SER 324: phi -134.8, psi 130.8 trans 
    43494 Applying TRP rotamer (chi angles: -65.3 -92.6) to mutadedModel #3/FI TRP 324 
    43495 
    43496 > color #3/FI:324 yellow
    43497 
    43498 > swapaa #3/FI:325 PHE
    43499 
    43500 Using Dunbrack library 
    43501 mutadedModel #3/FI LEU 325: phi -85.1, psi -14.8 trans 
    43502 Applying PHE rotamer (chi angles: -67.5 102.8) to mutadedModel #3/FI PHE 325 
    43503 
    43504 > color #3/FI:325 yellow
    43505 
    43506 > swapaa #3/FI:326 THR
    43507 
    43508 Using Dunbrack library 
    43509 mutadedModel #3/FI LEU 326: phi -82.5, psi -32.2 trans 
    43510 Applying THR rotamer (chi angles: -60.1) to mutadedModel #3/FI THR 326 
    43511 
    43512 > color #3/FI:326 yellow
    43513 
    43514 > swapaa #3/FI:327 TYR
    43515 
    43516 Using Dunbrack library 
    43517 mutadedModel #3/FI LEU 327: phi -77.7, psi -38.0 trans 
    43518 Applying TYR rotamer (chi angles: -70.4 -16.4) to mutadedModel #3/FI TYR 327 
    43519 
    43520 > color #3/FI:327 yellow
    43521 
    43522 > swapaa #3/FI:328 SER
    43523 
    43524 Using Dunbrack library 
    43525 mutadedModel #3/FI TRP 328: phi -73.0, psi -24.5 trans 
    43526 Applying SER rotamer (chi angles: 68.0) to mutadedModel #3/FI SER 328 
    43527 
    43528 > color #3/FI:328 yellow
    43529 
    43530 > swapaa #3/FI:329 LEU
    43531 
    43532 Using Dunbrack library 
    43533 mutadedModel #3/FI PHE 329: phi -84.8, psi -20.9 trans 
    43534 Applying LEU rotamer (chi angles: -64.9 175.2) to mutadedModel #3/FI LEU 329 
    43535 
    43536 > color #3/FI:329 yellow
    43537 
    43538 > swapaa #3/FI:331 LEU
    43539 
    43540 Using Dunbrack library 
    43541 mutadedModel #3/FI TRP 331: phi -72.1, psi -30.9 trans 
    43542 Applying LEU rotamer (chi angles: -88.6 -63.4) to mutadedModel #3/FI LEU 331 
    43543 
    43544 > color #3/FI:331 yellow
    43545 
    43546 > swapaa #3/FI:332 PHE
    43547 
    43548 Using Dunbrack library 
    43549 mutadedModel #3/FI GLU 332: phi -67.5, psi -38.1 trans 
    43550 Applying PHE rotamer (chi angles: 74.1 1.2) to mutadedModel #3/FI PHE 332 
    43551 
    43552 > color #3/FI:332 yellow
    43553 
    43554 > swapaa #3/FI:333 TYR
    43555 
    43556 Using Dunbrack library 
    43557 mutadedModel #3/FI LEU 333: phi -65.5, psi -42.6 trans 
    43558 Applying TYR rotamer (chi angles: -175.9 131.2) to mutadedModel #3/FI TYR 333 
    43559 
    43560 > color #3/FI:333 yellow
    43561 
    43562 > swapaa #3/FI:334 SER
    43563 
    43564 Using Dunbrack library 
    43565 mutadedModel #3/FI ILE 334: phi -57.4, psi -43.8 trans 
    43566 Applying SER rotamer (chi angles: 65.0) to mutadedModel #3/FI SER 334 
    43567 
    43568 > color #3/FI:334 yellow
    43569 
    43570 > swapaa #3/FI:335 ILE
    43571 
    43572 Using Dunbrack library 
    43573 mutadedModel #3/FI LEU 335: phi -65.2, psi -48.3 trans 
    43574 Applying ILE rotamer (chi angles: -62.6 -60.5) to mutadedModel #3/FI ILE 335 
    43575 
    43576 > color #3/FI:335 yellow
    43577 
    43578 > swapaa #3/FI:337 MET
    43579 
    43580 Using Dunbrack library 
    43581 mutadedModel #3/FI TYR 337: phi -74.5, psi -33.4 trans 
    43582 Applying MET rotamer (chi angles: -171.0 65.1 -168.9) to mutadedModel #3/FI
    43583 MET 337 
    43584 
    43585 > color #3/FI:337 yellow
    43586 
    43587 > swapaa #3/FI:338 SER
    43588 
    43589 Using Dunbrack library 
    43590 mutadedModel #3/FI CYS 338: phi -74.1, psi -26.6 trans 
    43591 Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/FI SER 338 
    43592 
    43593 > color #3/FI:338 yellow
    43594 
    43595 > swapaa #3/FI:339 GLY
    43596 
    43597 Using Dunbrack library 
    43598 Swapping mutadedModel #3/FI VAL 339 to GLY 
    43599 
    43600 > color #3/FI:339 yellow
    43601 
    43602 > swapaa #3/FI:340 PHE
    43603 
    43604 Using Dunbrack library 
    43605 mutadedModel #3/FI LYS 340: phi -71.3, psi -34.9 trans 
    43606 Applying PHE rotamer (chi angles: -171.8 73.8) to mutadedModel #3/FI PHE 340 
    43607 
    43608 > color #3/FI:340 yellow
    43609 
    43610 > swapaa #3/FI:341 LEU
    43611 
    43612 Using Dunbrack library 
    43613 mutadedModel #3/FI ASN 341: phi -66.9, psi -18.5 trans 
    43614 Applying LEU rotamer (chi angles: -88.1 -64.0) to mutadedModel #3/FI LEU 341 
    43615 
    43616 > color #3/FI:341 yellow
    43617 
    43618 > swapaa #3/FI:343 LEU
    43619 
    43620 Using Dunbrack library 
    43621 mutadedModel #3/FI GLY 343: phi -66.4, psi -40.0 trans 
    43622 Applying LEU rotamer (chi angles: -175.1 153.0) to mutadedModel #3/FI LEU 343 
    43623 
    43624 > color #3/FI:343 yellow
    43625 
    43626 > swapaa #3/FI:344 TYR
    43627 
    43628 Using Dunbrack library 
    43629 mutadedModel #3/FI ARG 344: phi -79.2, psi -35.6 trans 
    43630 Applying TYR rotamer (chi angles: -176.7 75.8) to mutadedModel #3/FI TYR 344 
    43631 
    43632 > color #3/FI:344 yellow
    43633 
    43634 > swapaa #3/FI:345 VAL
    43635 
    43636 Using Dunbrack library 
    43637 mutadedModel #3/FI ASN 345: phi -76.3, psi 1.0 trans 
    43638 Applying VAL rotamer (chi angles: 172.6) to mutadedModel #3/FI VAL 345 
    43639 
    43640 > color #3/FI:345 yellow
    43641 
    43642 > swapaa #3/FI:346 ILE
    43643 
    43644 Using Dunbrack library 
    43645 mutadedModel #3/FI ALA 346: phi -82.7, psi -14.6 trans 
    43646 Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 346 
    43647 
    43648 > color #3/FI:346 yellow
    43649 
    43650 > swapaa #3/FI:347 LEU
    43651 
    43652 Using Dunbrack library 
    43653 mutadedModel #3/FI GLN 347: phi -81.2, psi -5.4 trans 
    43654 Applying LEU rotamer (chi angles: -64.5 175.1) to mutadedModel #3/FI LEU 347 
    43655 
    43656 > color #3/FI:347 yellow
    43657 
    43658 > swapaa #3/FI:348 ALA
    43659 
    43660 Using Dunbrack library 
    43661 Swapping mutadedModel #3/FI ARG 348 to ALA 
    43662 
    43663 > color #3/FI:348 yellow
    43664 
    43665 > swapaa #3/FI:349 TYR
    43666 
    43667 Using Dunbrack library 
    43668 mutadedModel #3/FI VAL 349: phi -74.1, psi -59.4 trans 
    43669 Applying TYR rotamer (chi angles: 178.7 78.4) to mutadedModel #3/FI TYR 349 
    43670 
    43671 > color #3/FI:349 yellow
    43672 
    43673 > swapaa #3/FI:350 PRO
    43674 
    43675 Using Dunbrack library 
    43676 mutadedModel #3/FI ASN 350: phi -76.3, psi 76.7 trans 
    43677 Applying PRO rotamer (chi angles: 31.0 -35.4) to mutadedModel #3/FI PRO 350 
    43678 
    43679 > color #3/FI:350 yellow
    43680 
    43681 > swapaa #3/FI:351 ILE
    43682 
    43683 Using Dunbrack library 
    43684 mutadedModel #3/FI LEU 351: phi -78.1, psi 93.8 trans 
    43685 Applying ILE rotamer (chi angles: -167.6 67.2) to mutadedModel #3/FI ILE 351 
    43686 
    43687 > color #3/FI:351 yellow
    43688 
    43689 > swapaa #3/FI:352 TRP
    43690 
    43691 Using Dunbrack library 
    43692 mutadedModel #3/FI SER 352: phi -146.8, psi -127.9 trans 
    43693 Applying TRP rotamer (chi angles: -177.7 26.0) to mutadedModel #3/FI TRP 352 
    43694 
    43695 > color #3/FI:352 yellow
    43696 
    43697 > swapaa #3/FI:353 MET
    43698 
    43699 Using Dunbrack library 
    43700 mutadedModel #3/FI HIS 353: phi -70.1, psi -125.1 trans 
    43701 Applying MET rotamer (chi angles: -174.5 66.3 -170.7) to mutadedModel #3/FI
    43702 MET 353 
    43703 
    43704 > color #3/FI:353 yellow
    43705 
    43706 > swapaa #3/FI:354 GLU
    43707 
    43708 Using Dunbrack library 
    43709 mutadedModel #3/FI PRO 354: phi -33.9, psi -19.0 trans 
    43710 Applying GLU rotamer (chi angles: -177.6 65.6 20.8) to mutadedModel #3/FI GLU
    43711 354 
    43712 
    43713 > color #3/FI:354 yellow
    43714 
    43715 > swapaa #3/FI:356 GLN
    43716 
    43717 Using Dunbrack library 
    43718 mutadedModel #3/FI ARG 356: phi -66.2, psi -33.8 trans 
    43719 Applying GLN rotamer (chi angles: -174.6 175.4 95.3) to mutadedModel #3/FI GLN
    43720 356 
    43721 
    43722 > color #3/FI:356 yellow
    43723 
    43724 > swapaa #3/FI:357 PHE
    43725 
    43726 Using Dunbrack library 
    43727 mutadedModel #3/FI GLN 357: phi -78.2, psi -31.5 trans 
    43728 Applying PHE rotamer (chi angles: -71.7 44.7) to mutadedModel #3/FI PHE 357 
    43729 
    43730 > color #3/FI:357 yellow
    43731 
    43732 > swapaa #3/FI:358 TRP
    43733 
    43734 Using Dunbrack library 
    43735 mutadedModel #3/FI VAL 358: phi -84.4, psi -21.6 trans 
    43736 Applying TRP rotamer (chi angles: -177.2 -99.4) to mutadedModel #3/FI TRP 358 
    43737 
    43738 > color #3/FI:358 yellow
    43739 
    43740 > swapaa #3/FI:359 VAL
    43741 
    43742 Using Dunbrack library 
    43743 mutadedModel #3/FI LEU 359: phi -63.9, psi -40.0 trans 
    43744 Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/FI VAL 359 
    43745 
    43746 > color #3/FI:359 yellow
    43747 
    43748 > swapaa #3/FI:360 LEU
    43749 
    43750 Using Dunbrack library 
    43751 mutadedModel #3/FI ARG 360: phi -59.7, psi -22.3 trans 
    43752 Applying LEU rotamer (chi angles: -67.7 173.8) to mutadedModel #3/FI LEU 360 
    43753 
    43754 > color #3/FI:360 yellow
    43755 
    43756 > swapaa #3/FI:361 LEU
    43757 
    43758 Using Dunbrack library 
    43759 mutadedModel #3/FI PHE 361: phi -81.1, psi -36.8 trans 
    43760 Applying LEU rotamer (chi angles: -175.1 154.1) to mutadedModel #3/FI LEU 361 
    43761 
    43762 > color #3/FI:361 yellow
    43763 
    43764 > swapaa #3/FI:362 LEU
    43765 
    43766 Using Dunbrack library 
    43767 mutadedModel #3/FI TYR 362: phi -73.4, psi -44.6 trans 
    43768 Applying LEU rotamer (chi angles: -89.0 -62.2) to mutadedModel #3/FI LEU 362 
    43769 
    43770 > color #3/FI:362 yellow
    43771 
    43772 > swapaa #3/FI:363 PHE
    43773 
    43774 Using Dunbrack library 
    43775 mutadedModel #3/FI PRO 363: phi -60.9, psi -39.7 trans 
    43776 Applying PHE rotamer (chi angles: -178.0 133.3) to mutadedModel #3/FI PHE 363 
    43777 
    43778 > color #3/FI:363 yellow
    43779 
    43780 > swapaa #3/FI:364 MET
    43781 
    43782 Using Dunbrack library 
    43783 mutadedModel #3/FI GLN 364: phi -72.1, psi -27.5 trans 
    43784 Applying MET rotamer (chi angles: -65.7 -60.0 97.9) to mutadedModel #3/FI MET
    43785 364 
    43786 
    43787 > color #3/FI:364 yellow
    43788 
    43789 > swapaa #3/FI:365 LEU
    43790 
    43791 Using Dunbrack library 
    43792 mutadedModel #3/FI GLN 365: phi -77.1, psi -38.3 trans 
    43793 Applying LEU rotamer (chi angles: -174.4 -78.5) to mutadedModel #3/FI LEU 365 
    43794 
    43795 > color #3/FI:365 yellow
    43796 
    43797 > swapaa #3/FI:366 VAL
    43798 
    43799 Using Dunbrack library 
    43800 mutadedModel #3/FI GLN 366: phi -64.6, psi -35.0 trans 
    43801 Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 366 
    43802 
    43803 > color #3/FI:366 yellow
    43804 
    43805 > swapaa #3/FI:367 VAL
    43806 
    43807 Using Dunbrack library 
    43808 mutadedModel #3/FI GLY 367: phi -61.4, psi -27.5 trans 
    43809 Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 367 
    43810 
    43811 > color #3/FI:367 yellow
    43812 
    43813 > swapaa #3/FI:368 CYS
    43814 
    43815 Using Dunbrack library 
    43816 mutadedModel #3/FI LEU 368: phi -87.1, psi -23.6 trans 
    43817 Applying CYS rotamer (chi angles: -64.6) to mutadedModel #3/FI CYS 368 
    43818 
    43819 > color #3/FI:368 yellow
    43820 
    43821 > swapaa #3/FI:369 ARG
    43822 
    43823 Using Dunbrack library 
    43824 mutadedModel #3/FI LEU 369: phi -107.1, psi 3.4 trans 
    43825 Applying ARG rotamer (chi angles: -67.1 -86.2 67.9 -109.4) to mutadedModel
    43826 #3/FI ARG 369 
    43827 
    43828 > color #3/FI:369 yellow
    43829 
    43830 > swapaa #3/FI:370 LEU
    43831 
    43832 Using Dunbrack library 
    43833 mutadedModel #3/FI THR 370: phi -131.3, psi -30.4 trans 
    43834 Applying LEU rotamer (chi angles: -61.8 175.2) to mutadedModel #3/FI LEU 370 
    43835 
    43836 > color #3/FI:370 yellow
    43837 
    43838 > swapaa #3/FI:371 ASP
    43839 
    43840 Using Dunbrack library 
    43841 mutadedModel #3/FI SER 371: phi -126.5, psi 2.9 trans 
    43842 Applying ASP rotamer (chi angles: 63.2 55.9) to mutadedModel #3/FI ASP 371 
    43843 
    43844 > color #3/FI:371 yellow
    43845 
    43846 > color #3/FI:372 cyan
    43847 
    43848 > color #3/FI:373 cyan
    43849 
    43850 > color #3/FI:374 cyan
    43851 
    43852 > color #3/FI:375 cyan
    43853 
    43854 > select #3/GU
    43855 
    43856 1666 atoms, 1700 bonds, 203 residues, 1 model selected 
    43857 
    43858 > bond #3/GU:16@C #3/GU:17@N reasonable false
    43859 
    43860 Created 0 bonds 
    43861 
    43862 > bond #3/GU:17@C #3/GU:18@N reasonable false
    43863 
    43864 Created 0 bonds 
    43865 
    43866 > bond #3/GU:18@C #3/GU:19@N reasonable false
    43867 
    43868 Created 1 bond 
    43869 
    43870 > bond #3/GU:21@C #3/GU:22@N reasonable false
    43871 
    43872 Created 0 bonds 
    43873 
    43874 > bond #3/GU:22@C #3/GU:23@N reasonable false
    43875 
    43876 Created 0 bonds 
    43877 
    43878 > bond #3/GU:23@C #3/GU:24@N reasonable false
    43879 
    43880 Created 0 bonds 
    43881 
    43882 > bond #3/GU:24@C #3/GU:25@N reasonable false
    43883 
    43884 Created 0 bonds 
    43885 
    43886 > bond #3/GU:25@C #3/GU:26@N reasonable false
    43887 
    43888 Created 0 bonds 
    43889 
    43890 > bond #3/GU:26@C #3/GU:27@N reasonable false
    43891 
    43892 Created 0 bonds 
    43893 
    43894 > bond #3/GU:27@C #3/GU:28@N reasonable false
    43895 
    43896 Created 0 bonds 
    43897 
    43898 > bond #3/GU:28@C #3/GU:29@N reasonable false
    43899 
    43900 Created 0 bonds 
    43901 
    43902 > bond #3/GU:29@C #3/GU:30@N reasonable false
    43903 
    43904 Created 0 bonds 
    43905 
    43906 > bond #3/GU:30@C #3/GU:31@N reasonable false
    43907 
    43908 Created 1 bond 
    43909 
    43910 > bond #3/GU:31@C #3/GU:32@N reasonable false
    43911 
    43912 Created 0 bonds 
    43913 
    43914 > bond #3/GU:32@C #3/GU:33@N reasonable false
    43915 
    43916 Created 0 bonds 
    43917 
    43918 > bond #3/GU:33@C #3/GU:34@N reasonable false
    43919 
    43920 Created 0 bonds 
    43921 
    43922 > bond #3/GU:34@C #3/GU:35@N reasonable false
    43923 
    43924 Created 1 bond 
    43925 
    43926 > bond #3/GU:116@C #3/GU:117@N reasonable false
    43927 
    43928 Created 0 bonds 
    43929 
    43930 > bond #3/GU:117@C #3/GU:118@N reasonable false
    43931 
    43932 Created 0 bonds 
    43933 
    43934 > bond #3/GU:118@C #3/GU:119@N reasonable false
    43935 
    43936 Created 0 bonds 
    43937 
    43938 > bond #3/GU:119@C #3/GU:120@N reasonable false
    43939 
    43940 Created 0 bonds 
    43941 
    43942 > bond #3/GU:120@C #3/GU:121@N reasonable false
    43943 
    43944 Created 0 bonds 
    43945 
    43946 > bond #3/GU:121@C #3/GU:122@N reasonable false
    43947 
    43948 Created 0 bonds 
    43949 
    43950 > bond #3/GU:122@C #3/GU:123@N reasonable false
    43951 
    43952 Created 0 bonds 
    43953 
    43954 > bond #3/GU:123@C #3/GU:124@N reasonable false
    43955 
    43956 Created 0 bonds 
    43957 
    43958 > bond #3/GU:124@C #3/GU:125@N reasonable false
    43959 
    43960 Created 1 bond 
    43961 
    43962 > bond #3/GU:38@C #3/GU:39@N reasonable false
    43963 
    43964 Created 0 bonds 
    43965 
    43966 > bond #3/GU:39@C #3/GU:40@N reasonable false
    43967 
    43968 Created 0 bonds 
    43969 
    43970 > bond #3/GU:40@C #3/GU:41@N reasonable false
    43971 
    43972 Created 0 bonds 
    43973 
    43974 > bond #3/GU:41@C #3/GU:42@N reasonable false
    43975 
    43976 Created 0 bonds 
    43977 
    43978 > bond #3/GU:42@C #3/GU:43@N reasonable false
    43979 
    43980 Created 0 bonds 
    43981 
    43982 > bond #3/GU:43@C #3/GU:44@N reasonable false
    43983 
    43984 Created 0 bonds 
    43985 
    43986 > bond #3/GU:44@C #3/GU:45@N reasonable false
    43987 
    43988 Created 0 bonds 
    43989 
    43990 > bond #3/GU:45@C #3/GU:46@N reasonable false
    43991 
    43992 Created 0 bonds 
    43993 
    43994 > bond #3/GU:46@C #3/GU:47@N reasonable false
    43995 
    43996 Created 0 bonds 
    43997 
    43998 > bond #3/GU:47@C #3/GU:48@N reasonable false
    43999 
    44000 Created 0 bonds 
    44001 
    44002 > bond #3/GU:48@C #3/GU:49@N reasonable false
    44003 
    44004 Created 0 bonds 
    44005 
    44006 > bond #3/GU:49@C #3/GU:50@N reasonable false
    44007 
    44008 Created 0 bonds 
    44009 
    44010 > bond #3/GU:50@C #3/GU:51@N reasonable false
    44011 
    44012 Created 0 bonds 
    44013 
    44014 > bond #3/GU:51@C #3/GU:52@N reasonable false
    44015 
    44016 Created 0 bonds 
    44017 
    44018 > bond #3/GU:52@C #3/GU:53@N reasonable false
    44019 
    44020 Created 0 bonds 
    44021 
    44022 > bond #3/GU:53@C #3/GU:54@N reasonable false
    44023 
    44024 Created 0 bonds 
    44025 
    44026 > bond #3/GU:54@C #3/GU:55@N reasonable false
    44027 
    44028 Created 0 bonds 
    44029 
    44030 > bond #3/GU:55@C #3/GU:56@N reasonable false
    44031 
    44032 Created 0 bonds 
    44033 
    44034 > bond #3/GU:56@C #3/GU:57@N reasonable false
    44035 
    44036 Created 0 bonds 
    44037 
    44038 > bond #3/GU:57@C #3/GU:58@N reasonable false
    44039 
    44040 Created 0 bonds 
    44041 
    44042 > bond #3/GU:58@C #3/GU:59@N reasonable false
    44043 
    44044 Created 0 bonds 
    44045 
    44046 > bond #3/GU:59@C #3/GU:60@N reasonable false
    44047 
    44048 Created 0 bonds 
    44049 
    44050 > bond #3/GU:60@C #3/GU:61@N reasonable false
    44051 
    44052 Created 0 bonds 
    44053 
    44054 > bond #3/GU:61@C #3/GU:62@N reasonable false
    44055 
    44056 Created 0 bonds 
    44057 
    44058 > bond #3/GU:62@C #3/GU:63@N reasonable false
    44059 
    44060 Created 0 bonds 
    44061 
    44062 > bond #3/GU:63@C #3/GU:64@N reasonable false
    44063 
    44064 Created 0 bonds 
    44065 
    44066 > bond #3/GU:64@C #3/GU:65@N reasonable false
    44067 
    44068 Created 0 bonds 
    44069 
    44070 > bond #3/GU:65@C #3/GU:66@N reasonable false
    44071 
    44072 Created 0 bonds 
    44073 
    44074 > bond #3/GU:66@C #3/GU:67@N reasonable false
    44075 
    44076 Created 0 bonds 
    44077 
    44078 > bond #3/GU:67@C #3/GU:68@N reasonable false
    44079 
    44080 Created 1 bond 
    44081 
    44082 > bond #3/GU:19@C #3/GU:20@N reasonable false
    44083 
    44084 Created 0 bonds 
    44085 
    44086 > bond #3/GU:20@C #3/GU:21@N reasonable false
    44087 
    44088 Created 1 bond 
    44089 
    44090 > bond #3/GU:36@C #3/GU:37@N reasonable false
    44091 
    44092 Created 0 bonds 
    44093 
    44094 > bond #3/GU:37@C #3/GU:38@N reasonable false
    44095 
    44096 Created 1 bond 
    44097 
    44098 > bond #3/GU:14@C #3/GU:15@N reasonable false
    44099 
    44100 Created 0 bonds 
    44101 
    44102 > bond #3/GU:15@C #3/GU:16@N reasonable false
    44103 
    44104 Created 1 bond 
    44105 
    44106 > bond #3/GU:125@C #3/GU:126@N reasonable false
    44107 
    44108 Created 0 bonds 
    44109 
    44110 > bond #3/GU:126@C #3/GU:127@N reasonable false
    44111 
    44112 Created 1 bond 
    44113 
    44114 > bond #3/GU:35@C #3/GU:36@N reasonable false
    44115 
    44116 Created 1 bond 
    44117 
    44118 > bond #3/GU:127@C #3/GU:128@N reasonable false
    44119 
    44120 Created 0 bonds 
    44121 
    44122 > bond #3/GU:128@C #3/GU:129@N reasonable false
    44123 
    44124 Created 0 bonds 
    44125 
    44126 > bond #3/GU:129@C #3/GU:130@N reasonable false
    44127 
    44128 Created 0 bonds 
    44129 
    44130 > bond #3/GU:130@C #3/GU:131@N reasonable false
    44131 
    44132 Created 0 bonds 
    44133 
    44134 > bond #3/GU:131@C #3/GU:132@N reasonable false
    44135 
    44136 Created 0 bonds 
    44137 
    44138 > bond #3/GU:132@C #3/GU:133@N reasonable false
    44139 
    44140 Created 0 bonds 
    44141 
    44142 > bond #3/GU:133@C #3/GU:134@N reasonable false
    44143 
    44144 Created 0 bonds 
    44145 
    44146 > bond #3/GU:134@C #3/GU:135@N reasonable false
    44147 
    44148 Created 0 bonds 
    44149 
    44150 > bond #3/GU:135@C #3/GU:136@N reasonable false
    44151 
    44152 Created 0 bonds 
    44153 
    44154 > bond #3/GU:136@C #3/GU:137@N reasonable false
    44155 
    44156 Created 0 bonds 
    44157 
    44158 > bond #3/GU:137@C #3/GU:138@N reasonable false
    44159 
    44160 Created 0 bonds 
    44161 
    44162 > bond #3/GU:138@C #3/GU:139@N reasonable false
    44163 
    44164 Created 0 bonds 
    44165 
    44166 > bond #3/GU:139@C #3/GU:140@N reasonable false
    44167 
    44168 Created 0 bonds 
    44169 
    44170 > bond #3/GU:140@C #3/GU:141@N reasonable false
    44171 
    44172 Created 0 bonds 
    44173 
    44174 > bond #3/GU:141@C #3/GU:142@N reasonable false
    44175 
    44176 Created 0 bonds 
    44177 
    44178 > bond #3/GU:142@C #3/GU:143@N reasonable false
    44179 
    44180 Created 0 bonds 
    44181 
    44182 > bond #3/GU:143@C #3/GU:144@N reasonable false
    44183 
    44184 Created 0 bonds 
    44185 
    44186 > bond #3/GU:144@C #3/GU:145@N reasonable false
    44187 
    44188 Created 0 bonds 
    44189 
    44190 > bond #3/GU:145@C #3/GU:146@N reasonable false
    44191 
    44192 Created 0 bonds 
    44193 
    44194 > bond #3/GU:146@C #3/GU:147@N reasonable false
    44195 
    44196 Created 0 bonds 
    44197 
    44198 > bond #3/GU:147@C #3/GU:148@N reasonable false
    44199 
    44200 Created 0 bonds 
    44201 
    44202 > bond #3/GU:148@C #3/GU:149@N reasonable false
    44203 
    44204 Created 0 bonds 
    44205 
    44206 > bond #3/GU:149@C #3/GU:150@N reasonable false
    44207 
    44208 Created 0 bonds 
    44209 
    44210 > bond #3/GU:150@C #3/GU:151@N reasonable false
    44211 
    44212 Created 0 bonds 
    44213 
    44214 > bond #3/GU:151@C #3/GU:152@N reasonable false
    44215 
    44216 Created 0 bonds 
    44217 
    44218 > bond #3/GU:152@C #3/GU:153@N reasonable false
    44219 
    44220 Created 0 bonds 
    44221 
    44222 > bond #3/GU:153@C #3/GU:154@N reasonable false
    44223 
    44224 Created 0 bonds 
    44225 
    44226 > bond #3/GU:154@C #3/GU:155@N reasonable false
    44227 
    44228 Created 0 bonds 
    44229 
    44230 > bond #3/GU:155@C #3/GU:156@N reasonable false
    44231 
    44232 Created 0 bonds 
    44233 
    44234 > bond #3/GU:156@C #3/GU:157@N reasonable false
    44235 
    44236 Created 0 bonds 
    44237 
    44238 > bond #3/GU:157@C #3/GU:158@N reasonable false
    44239 
    44240 Created 0 bonds 
    44241 
    44242 > bond #3/GU:158@C #3/GU:159@N reasonable false
    44243 
    44244 Created 0 bonds 
    44245 
    44246 > bond #3/GU:159@C #3/GU:160@N reasonable false
    44247 
    44248 Created 0 bonds 
    44249 
    44250 > bond #3/GU:160@C #3/GU:161@N reasonable false
    44251 
    44252 Created 0 bonds 
    44253 
    44254 > bond #3/GU:161@C #3/GU:162@N reasonable false
    44255 
    44256 Created 0 bonds 
    44257 
    44258 > bond #3/GU:162@C #3/GU:163@N reasonable false
    44259 
    44260 Created 0 bonds 
    44261 
    44262 > bond #3/GU:163@C #3/GU:164@N reasonable false
    44263 
    44264 Created 0 bonds 
    44265 
    44266 > bond #3/GU:164@C #3/GU:165@N reasonable false
    44267 
    44268 Created 0 bonds 
    44269 
    44270 > bond #3/GU:165@C #3/GU:166@N reasonable false
    44271 
    44272 Created 0 bonds 
    44273 
    44274 > bond #3/GU:166@C #3/GU:167@N reasonable false
    44275 
    44276 Created 0 bonds 
    44277 
    44278 > bond #3/GU:167@C #3/GU:168@N reasonable false
    44279 
    44280 Created 0 bonds 
    44281 
    44282 > bond #3/GU:168@C #3/GU:169@N reasonable false
    44283 
    44284 Created 0 bonds 
    44285 
    44286 > bond #3/GU:169@C #3/GU:170@N reasonable false
    44287 
    44288 Created 0 bonds 
    44289 
    44290 > bond #3/GU:170@C #3/GU:171@N reasonable false
    44291 
    44292 Created 0 bonds 
    44293 
    44294 > bond #3/GU:171@C #3/GU:172@N reasonable false
    44295 
    44296 Created 0 bonds 
    44297 
    44298 > bond #3/GU:172@C #3/GU:173@N reasonable false
    44299 
    44300 Created 0 bonds 
    44301 
    44302 > bond #3/GU:173@C #3/GU:174@N reasonable false
    44303 
    44304 Created 0 bonds 
    44305 
    44306 > bond #3/GU:174@C #3/GU:175@N reasonable false
    44307 
    44308 Created 0 bonds 
    44309 
    44310 > bond #3/GU:175@C #3/GU:176@N reasonable false
    44311 
    44312 Created 0 bonds 
    44313 
    44314 > bond #3/GU:176@C #3/GU:177@N reasonable false
    44315 
    44316 Created 0 bonds 
    44317 
    44318 > bond #3/GU:177@C #3/GU:178@N reasonable false
    44319 
    44320 Created 0 bonds 
    44321 
    44322 > bond #3/GU:178@C #3/GU:179@N reasonable false
    44323 
    44324 Created 0 bonds 
    44325 
    44326 > bond #3/GU:179@C #3/GU:180@N reasonable false
    44327 
    44328 Created 0 bonds 
    44329 
    44330 > bond #3/GU:180@C #3/GU:181@N reasonable false
    44331 
    44332 Created 0 bonds 
    44333 
    44334 > bond #3/GU:181@C #3/GU:182@N reasonable false
    44335 
    44336 Created 0 bonds 
    44337 
    44338 > bond #3/GU:182@C #3/GU:183@N reasonable false
    44339 
    44340 Created 0 bonds 
    44341 
    44342 > bond #3/GU:183@C #3/GU:184@N reasonable false
    44343 
    44344 Created 0 bonds 
    44345 
    44346 > bond #3/GU:184@C #3/GU:185@N reasonable false
    44347 
    44348 Created 0 bonds 
    44349 
    44350 > bond #3/GU:185@C #3/GU:186@N reasonable false
    44351 
    44352 Created 0 bonds 
    44353 
    44354 > bond #3/GU:186@C #3/GU:187@N reasonable false
    44355 
    44356 Created 0 bonds 
    44357 
    44358 > bond #3/GU:187@C #3/GU:188@N reasonable false
    44359 
    44360 Created 0 bonds 
    44361 
    44362 > bond #3/GU:188@C #3/GU:189@N reasonable false
    44363 
    44364 Created 0 bonds 
    44365 
    44366 > bond #3/GU:189@C #3/GU:190@N reasonable false
    44367 
    44368 Created 0 bonds 
    44369 
    44370 > bond #3/GU:190@C #3/GU:191@N reasonable false
    44371 
    44372 Created 0 bonds 
    44373 
    44374 > bond #3/GU:191@C #3/GU:192@N reasonable false
    44375 
    44376 Created 1 bond 
    44377 
    44378 > bond #3/GU:68@C #3/GU:69@N reasonable false
    44379 
    44380 Created 0 bonds 
    44381 
    44382 > bond #3/GU:69@C #3/GU:70@N reasonable false
    44383 
    44384 Created 0 bonds 
    44385 
    44386 > bond #3/GU:70@C #3/GU:71@N reasonable false
    44387 
    44388 Created 0 bonds 
    44389 
    44390 > bond #3/GU:71@C #3/GU:72@N reasonable false
    44391 
    44392 Created 0 bonds 
    44393 
    44394 > bond #3/GU:72@C #3/GU:73@N reasonable false
    44395 
    44396 Created 0 bonds 
    44397 
    44398 > bond #3/GU:73@C #3/GU:74@N reasonable false
    44399 
    44400 Created 0 bonds 
    44401 
    44402 > bond #3/GU:74@C #3/GU:75@N reasonable false
    44403 
    44404 Created 0 bonds 
    44405 
    44406 > bond #3/GU:75@C #3/GU:76@N reasonable false
    44407 
    44408 Created 0 bonds 
    44409 
    44410 > bond #3/GU:76@C #3/GU:77@N reasonable false
    44411 
    44412 Created 0 bonds 
    44413 
    44414 > bond #3/GU:77@C #3/GU:78@N reasonable false
    44415 
    44416 Created 0 bonds 
    44417 
    44418 > bond #3/GU:78@C #3/GU:79@N reasonable false
    44419 
    44420 Created 0 bonds 
    44421 
    44422 > bond #3/GU:79@C #3/GU:80@N reasonable false
    44423 
    44424 Created 0 bonds 
    44425 
    44426 > bond #3/GU:80@C #3/GU:81@N reasonable false
    44427 
    44428 Created 0 bonds 
    44429 
    44430 > bond #3/GU:81@C #3/GU:82@N reasonable false
    44431 
    44432 Created 0 bonds 
    44433 
    44434 > bond #3/GU:82@C #3/GU:83@N reasonable false
    44435 
    44436 Created 0 bonds 
    44437 
    44438 > bond #3/GU:83@C #3/GU:84@N reasonable false
    44439 
    44440 Created 0 bonds 
    44441 
    44442 > bond #3/GU:84@C #3/GU:85@N reasonable false
    44443 
    44444 Created 0 bonds 
    44445 
    44446 > bond #3/GU:85@C #3/GU:86@N reasonable false
    44447 
    44448 Created 0 bonds 
    44449 
    44450 > bond #3/GU:86@C #3/GU:87@N reasonable false
    44451 
    44452 Created 0 bonds 
    44453 
    44454 > bond #3/GU:87@C #3/GU:88@N reasonable false
    44455 
    44456 Created 0 bonds 
    44457 
    44458 > bond #3/GU:88@C #3/GU:89@N reasonable false
    44459 
    44460 Created 0 bonds 
    44461 
    44462 > bond #3/GU:89@C #3/GU:90@N reasonable false
    44463 
    44464 Created 0 bonds 
    44465 
    44466 > bond #3/GU:90@C #3/GU:91@N reasonable false
    44467 
    44468 Created 0 bonds 
    44469 
    44470 > bond #3/GU:91@C #3/GU:92@N reasonable false
    44471 
    44472 Created 0 bonds 
    44473 
    44474 > bond #3/GU:92@C #3/GU:93@N reasonable false
    44475 
    44476 Created 0 bonds 
    44477 
    44478 > bond #3/GU:93@C #3/GU:94@N reasonable false
    44479 
    44480 Created 0 bonds 
    44481 
    44482 > bond #3/GU:94@C #3/GU:95@N reasonable false
    44483 
    44484 Created 0 bonds 
    44485 
    44486 > bond #3/GU:95@C #3/GU:96@N reasonable false
    44487 
    44488 Created 0 bonds 
    44489 
    44490 > bond #3/GU:96@C #3/GU:97@N reasonable false
    44491 
    44492 Created 0 bonds 
    44493 
    44494 > bond #3/GU:97@C #3/GU:98@N reasonable false
    44495 
    44496 Created 0 bonds 
    44497 
    44498 > bond #3/GU:98@C #3/GU:99@N reasonable false
    44499 
    44500 Created 0 bonds 
    44501 
    44502 > bond #3/GU:99@C #3/GU:100@N reasonable false
    44503 
    44504 Created 0 bonds 
    44505 
    44506 > bond #3/GU:100@C #3/GU:101@N reasonable false
    44507 
    44508 Created 0 bonds 
    44509 
    44510 > bond #3/GU:101@C #3/GU:102@N reasonable false
    44511 
    44512 Created 0 bonds 
    44513 
    44514 > bond #3/GU:102@C #3/GU:103@N reasonable false
    44515 
    44516 Created 0 bonds 
    44517 
    44518 > bond #3/GU:103@C #3/GU:104@N reasonable false
    44519 
    44520 Created 0 bonds 
    44521 
    44522 > bond #3/GU:104@C #3/GU:105@N reasonable false
    44523 
    44524 Created 0 bonds 
    44525 
    44526 > bond #3/GU:105@C #3/GU:106@N reasonable false
    44527 
    44528 Created 0 bonds 
    44529 
    44530 > bond #3/GU:106@C #3/GU:107@N reasonable false
    44531 
    44532 Created 0 bonds 
    44533 
    44534 > bond #3/GU:107@C #3/GU:108@N reasonable false
    44535 
    44536 Created 0 bonds 
    44537 
    44538 > bond #3/GU:108@C #3/GU:109@N reasonable false
    44539 
    44540 Created 0 bonds 
    44541 
    44542 > bond #3/GU:109@C #3/GU:110@N reasonable false
    44543 
    44544 Created 0 bonds 
    44545 
    44546 > bond #3/GU:110@C #3/GU:111@N reasonable false
    44547 
    44548 Created 0 bonds 
    44549 
    44550 > bond #3/GU:111@C #3/GU:112@N reasonable false
    44551 
    44552 Created 0 bonds 
    44553 
    44554 > bond #3/GU:112@C #3/GU:113@N reasonable false
    44555 
    44556 Created 0 bonds 
    44557 
    44558 > bond #3/GU:113@C #3/GU:114@N reasonable false
    44559 
    44560 Created 0 bonds 
    44561 
    44562 > bond #3/GU:114@C #3/GU:115@N reasonable false
    44563 
    44564 Created 0 bonds 
    44565 
    44566 > bond #3/GU:115@C #3/GU:116@N reasonable false
    44567 
    44568 Created 1 bond 
    44569 
    44570 > bond #3/GU:10@C #3/GU:11@N reasonable false
    44571 
    44572 Created 0 bonds 
    44573 
    44574 > bond #3/GU:11@C #3/GU:12@N reasonable false
    44575 
    44576 Created 0 bonds 
    44577 
    44578 > bond #3/GU:12@C #3/GU:13@N reasonable false
    44579 
    44580 Created 0 bonds 
    44581 
    44582 > bond #3/GU:13@C #3/GU:14@N reasonable false
    44583 
    44584 Created 1 bond 
    44585 
    44586 > bond #3/GU:192@C #3/GU:193@N reasonable false
    44587 
    44588 Created 0 bonds 
    44589 
    44590 > bond #3/GU:193@C #3/GU:194@N reasonable false
    44591 
    44592 Created 0 bonds 
    44593 
    44594 > bond #3/GU:194@C #3/GU:195@N reasonable false
    44595 
    44596 Created 0 bonds 
    44597 
    44598 > bond #3/GU:195@C #3/GU:196@N reasonable false
    44599 
    44600 Created 0 bonds 
    44601 
    44602 > bond #3/GU:196@C #3/GU:197@N reasonable false
    44603 
    44604 Created 0 bonds 
    44605 
    44606 > bond #3/GU:197@C #3/GU:198@N reasonable false
    44607 
    44608 Created 0 bonds 
    44609 
    44610 > bond #3/GU:198@C #3/GU:199@N reasonable false
    44611 
    44612 Created 0 bonds 
    44613 
    44614 > bond #3/GU:199@C #3/GU:200@N reasonable false
    44615 
    44616 Created 0 bonds 
    44617 
    44618 > bond #3/GU:200@C #3/GU:201@N reasonable false
    44619 
    44620 Created 0 bonds 
    44621 
    44622 > bond #3/GU:201@C #3/GU:202@N reasonable false
    44623 
    44624 Created 0 bonds 
    44625 
    44626 > bond #3/GU:202@C #3/GU:203@N reasonable false
    44627 
    44628 Created 0 bonds 
    44629 
    44630 > bond #3/GU:1@C #3/GU:2@N reasonable false
    44631 
    44632 Created 0 bonds 
    44633 
    44634 > bond #3/GU:2@C #3/GU:3@N reasonable false
    44635 
    44636 Created 0 bonds 
    44637 
    44638 > bond #3/GU:3@C #3/GU:4@N reasonable false
    44639 
    44640 Created 0 bonds 
    44641 
    44642 > bond #3/GU:4@C #3/GU:5@N reasonable false
    44643 
    44644 Created 0 bonds 
    44645 
    44646 > bond #3/GU:5@C #3/GU:6@N reasonable false
    44647 
    44648 Created 0 bonds 
    44649 
    44650 > bond #3/GU:6@C #3/GU:7@N reasonable false
    44651 
    44652 Created 0 bonds 
    44653 
    44654 > bond #3/GU:7@C #3/GU:8@N reasonable false
    44655 
    44656 Created 0 bonds 
    44657 
    44658 > bond #3/GU:8@C #3/GU:9@N reasonable false
    44659 
    44660 Created 0 bonds 
    44661 
    44662 > bond #3/GU:9@C #3/GU:10@N reasonable false
    44663 
    44664 Created 1 bond 
    44665 
    44666 > swapaa #3/GU:1 MET
    44667 
    44668 Using Dunbrack library 
    44669 mutadedModel #3/GU GLY 1: phi none, psi 14.0 trans 
    44670 Applying MET rotamer (chi angles: -67.4 178.0 70.4) to mutadedModel #3/GU MET
    44671 1 
    44672 
    44673 > color #3/GU:1 yellow
    44674 
    44675 > swapaa #3/GU:2 MET
    44676 
    44677 Using Dunbrack library 
    44678 mutadedModel #3/GU ALA 2: phi -83.8, psi -24.9 trans 
    44679 Applying MET rotamer (chi angles: -66.8 179.4 -177.2) to mutadedModel #3/GU
    44680 MET 2 
    44681 
    44682 > color #3/GU:2 yellow
    44683 
    44684 > swapaa #3/GU:3 LYS
    44685 
    44686 Using Dunbrack library 
    44687 mutadedModel #3/GU PHE 3: phi -101.5, psi -13.2 trans 
    44688 Applying LYS rotamer (chi angles: 68.6 -178.4 179.9 -178.9) to mutadedModel
    44689 #3/GU LYS 3 
    44690 
    44691 > color #3/GU:3 yellow
    44692 
    44693 > swapaa #3/GU:4 PRO
    44694 
    44695 Using Dunbrack library 
    44696 mutadedModel #3/GU THR 4: phi -91.1, psi -20.2 trans 
    44697 Applying PRO rotamer (chi angles: 31.2 -36.1) to mutadedModel #3/GU PRO 4 
    44698 
    44699 > color #3/GU:4 yellow
    44700 
    44701 > swapaa #3/GU:5 THR
    44702 
    44703 Using Dunbrack library 
    44704 mutadedModel #3/GU ARG 5: phi -141.6, psi 3.8 trans 
    44705 Applying THR rotamer (chi angles: 60.7) to mutadedModel #3/GU THR 5 
    44706 
    44707 > color #3/GU:5 yellow
    44708 
    44709 > swapaa #3/GU:6 SER
    44710 
    44711 Using Dunbrack library 
    44712 mutadedModel #3/GU LYS 6: phi -115.4, psi 167.1 trans 
    44713 Applying SER rotamer (chi angles: -179.7) to mutadedModel #3/GU SER 6 
    44714 
    44715 > color #3/GU:6 yellow
    44716 
    44717 > swapaa #3/GU:7 PRO
    44718 
    44719 Using Dunbrack library 
    44720 mutadedModel #3/GU ILE 7: phi -80.2, psi 141.2 trans 
    44721 Applying PRO rotamer (chi angles: -18.0 32.4) to mutadedModel #3/GU PRO 7 
    44722 
    44723 > color #3/GU:7 yellow
    44724 
    44725 > swapaa #3/GU:8 ASN
    44726 
    44727 Using Dunbrack library 
    44728 mutadedModel #3/GU GLN 8: phi -40.2, psi 104.1 trans 
    44729 Applying ASN rotamer (chi angles: -174.1 125.4) to mutadedModel #3/GU ASN 8 
    44730 
    44731 > color #3/GU:8 yellow
    44732 
    44733 > swapaa #3/GU:9 PHE
    44734 
    44735 Using Dunbrack library 
    44736 mutadedModel #3/GU LEU 9: phi -53.5, psi -89.9 trans 
    44737 Applying PHE rotamer (chi angles: -179.7 53.1) to mutadedModel #3/GU PHE 9 
    44738 
    44739 > color #3/GU:9 yellow
    44740 
    44741 > swapaa #3/GU:10 MET
    44742 
    44743 Using Dunbrack library 
    44744 mutadedModel #3/GU THR 10: phi 69.4, psi 11.6 cis 
    44745 Applying MET rotamer (chi angles: -67.2 176.5 70.1) to mutadedModel #3/GU MET
    44746 10 
    44747 
    44748 > color #3/GU:10 yellow
    44749 
    44750 > swapaa #3/GU:11 ALA
    44751 
    44752 Using Dunbrack library 
    44753 Swapping mutadedModel #3/GU ASN 11 to ALA 
    44754 
    44755 > color #3/GU:11 yellow
    44756 
    44757 > swapaa #3/GU:12 GLN
    44758 
    44759 Using Dunbrack library 
    44760 mutadedModel #3/GU SER 12: phi 160.5, psi 136.6 trans 
    44761 Applying GLN rotamer (chi angles: -63.5 -64.8 -50.4) to mutadedModel #3/GU GLN
    44762 12 
    44763 
    44764 > color #3/GU:12 yellow
    44765 
    44766 > swapaa #3/GU:13 GLY
    44767 
    44768 Using Dunbrack library 
    44769 Swapping mutadedModel #3/GU PRO 13 to GLY 
    44770 
    44771 > color #3/GU:13 yellow
    44772 
    44773 > swapaa #3/GU:14 ILE
    44774 
    44775 Using Dunbrack library 
    44776 mutadedModel #3/GU GLY 14: phi 96.0, psi -93.6 trans 
    44777 Applying ILE rotamer (chi angles: -59.0 -60.8) to mutadedModel #3/GU ILE 14 
    44778 
    44779 > color #3/GU:14 yellow
    44780 
    44781 > swapaa #3/GU:15 TRP
    44782 
    44783 Using Dunbrack library 
    44784 mutadedModel #3/GU ILE 15: phi -15.8, psi 10.7 trans 
    44785 Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/GU TRP 15 
    44786 
    44787 > color #3/GU:15 yellow
    44788 
    44789 > swapaa #3/GU:16 ALA
    44790 
    44791 Using Dunbrack library 
    44792 Swapping mutadedModel #3/GU SER 16 to ALA 
    44793 
    44794 > color #3/GU:16 yellow
    44795 
    44796 > swapaa #3/GU:18 PHE
    44797 
    44798 Using Dunbrack library 
    44799 mutadedModel #3/GU ARG 18: phi 26.9, psi -9.7 trans 
    44800 Applying PHE rotamer (chi angles: -67.5 98.9) to mutadedModel #3/GU PHE 18 
    44801 
    44802 > color #3/GU:18 yellow
    44803 
    44804 > swapaa #3/GU:19 ARG
    44805 
    44806 Using Dunbrack library 
    44807 mutadedModel #3/GU LEU 19: phi -14.4, psi -32.4 trans 
    44808 Applying ARG rotamer (chi angles: -178.4 -92.8 178.6 -84.3) to mutadedModel
    44809 #3/GU ARG 19 
    44810 
    44811 > color #3/GU:19 yellow
    44812 
    44813 > swapaa #3/GU:20 TYR
    44814 
    44815 Using Dunbrack library 
    44816 mutadedModel #3/GU GLY 20: phi 167.3, psi 145.8 trans 
    44817 Applying TYR rotamer (chi angles: -178.6 52.3) to mutadedModel #3/GU TYR 20 
    44818 
    44819 > color #3/GU:20 yellow
    44820 
    44821 > swapaa #3/GU:22 ILE
    44822 
    44823 Using Dunbrack library 
    44824 mutadedModel #3/GU GLN 22: phi -96.0, psi -50.8 trans 
    44825 Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/GU ILE 22 
    44826 
    44827 > color #3/GU:22 yellow
    44828 
    44829 > swapaa #3/GU:24 HIS
    44830 
    44831 Using Dunbrack library 
    44832 mutadedModel #3/GU CYS 24: phi -72.2, psi -39.3 trans 
    44833 Applying HIS rotamer (chi angles: -176.1 -108.3) to mutadedModel #3/GU HIS 24 
    44834 
    44835 > color #3/GU:24 yellow
    44836 
    44837 > swapaa #3/GU:26 PHE
    44838 
    44839 Using Dunbrack library 
    44840 mutadedModel #3/GU LYS 26: phi -136.6, psi -37.5 trans 
    44841 Applying PHE rotamer (chi angles: -65.1 102.9) to mutadedModel #3/GU PHE 26 
    44842 
    44843 > color #3/GU:26 yellow
    44844 
    44845 > swapaa #3/GU:28 PRO
    44846 
    44847 Using Dunbrack library 
    44848 mutadedModel #3/GU SER 28: phi -101.3, psi -28.4 trans 
    44849 Applying PRO rotamer (chi angles: 26.5 -34.7) to mutadedModel #3/GU PRO 28 
    44850 
    44851 > color #3/GU:28 yellow
    44852 
    44853 > swapaa #3/GU:29 ASN
    44854 
    44855 Using Dunbrack library 
    44856 mutadedModel #3/GU GLN 29: phi -74.7, psi -111.1 trans 
    44857 Applying ASN rotamer (chi angles: -69.4 -54.9) to mutadedModel #3/GU ASN 29 
    44858 
    44859 > color #3/GU:29 yellow
    44860 
    44861 > swapaa #3/GU:30 MET
    44862 
    44863 Using Dunbrack library 
    44864 mutadedModel #3/GU ASP 30: phi -13.3, psi 77.1 trans 
    44865 Applying MET rotamer (chi angles: -170.7 67.5 -101.0) to mutadedModel #3/GU
    44866 MET 30 
    44867 
    44868 > color #3/GU:30 yellow
    44869 
    44870 > swapaa #3/GU:31 TYR
    44871 
    44872 Using Dunbrack library 
    44873 mutadedModel #3/GU TRP 31: phi -153.2, psi -35.9 trans 
    44874 Applying TYR rotamer (chi angles: -65.8 101.9) to mutadedModel #3/GU TYR 31 
    44875 
    44876 > color #3/GU:31 yellow
    44877 
    44878 > swapaa #3/GU:33 GLU
    44879 
    44880 Using Dunbrack library 
    44881 mutadedModel #3/GU ILE 33: phi -81.2, psi -27.9 trans 
    44882 Applying GLU rotamer (chi angles: -67.4 179.1 -7.7) to mutadedModel #3/GU GLU
    44883 33 
    44884 
    44885 > color #3/GU:33 yellow
    44886 
    44887 > swapaa #3/GU:35 LEU
    44888 
    44889 Using Dunbrack library 
    44890 mutadedModel #3/GU ILE 35: phi 17.4, psi 12.7 trans 
    44891 Applying LEU rotamer (chi angles: -179.8 62.5) to mutadedModel #3/GU LEU 35 
    44892 
    44893 > color #3/GU:35 yellow
    44894 
    44895 > swapaa #3/GU:36 SER
    44896 
    44897 Using Dunbrack library 
    44898 mutadedModel #3/GU PHE 36: phi -145.8, psi -90.7 cis 
    44899 Applying SER rotamer (chi angles: 59.2) to mutadedModel #3/GU SER 36 
    44900 
    44901 > color #3/GU:36 yellow
    44902 
    44903 > swapaa #3/GU:37 VAL
    44904 
    44905 Using Dunbrack library 
    44906 mutadedModel #3/GU ALA 37: phi 23.2, psi 6.2 cis 
    44907 Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/GU VAL 37 
    44908 
    44909 > color #3/GU:37 yellow
    44910 
    44911 > swapaa #3/GU:38 GLN
    44912 
    44913 Using Dunbrack library 
    44914 mutadedModel #3/GU MET 38: phi -87.8, psi -60.6 cis 
    44915 Applying GLN rotamer (chi angles: -68.3 79.8 37.5) to mutadedModel #3/GU GLN
    44916 38 
    44917 
    44918 > color #3/GU:38 yellow
    44919 
    44920 > swapaa #3/GU:39 ASN
    44921 
    44922 Using Dunbrack library 
    44923 mutadedModel #3/GU ASP 39: phi -91.9, psi 11.9 trans 
    44924 Applying ASN rotamer (chi angles: -69.7 -121.3) to mutadedModel #3/GU ASN 39 
    44925 
    44926 > color #3/GU:39 yellow
    44927 
    44928 > swapaa #3/GU:40 ALA
    44929 
    44930 Using Dunbrack library 
    44931 Swapping mutadedModel #3/GU SER 40 to ALA 
    44932 
    44933 > color #3/GU:40 yellow
    44934 
    44935 > swapaa #3/GU:41 HIS
    44936 
    44937 Using Dunbrack library 
    44938 mutadedModel #3/GU PHE 41: phi -82.5, psi -26.0 trans 
    44939 Applying HIS rotamer (chi angles: -68.9 -68.5) to mutadedModel #3/GU HIS 41 
    44940 
    44941 > color #3/GU:41 yellow
    44942 
    44943 > swapaa #3/GU:42 LYS
    44944 
    44945 Using Dunbrack library 
    44946 mutadedModel #3/GU MET 42: phi -67.4, psi -33.2 trans 
    44947 Applying LYS rotamer (chi angles: -86.1 67.9 178.6 178.3) to mutadedModel
    44948 #3/GU LYS 42 
    44949 
    44950 > color #3/GU:42 yellow
    44951 
    44952 > swapaa #3/GU:43 VAL
    44953 
    44954 Using Dunbrack library 
    44955 mutadedModel #3/GU ILE 43: phi -76.6, psi -36.3 trans 
    44956 Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/GU VAL 43 
    44957 
    44958 > color #3/GU:43 yellow
    44959 
    44960 > swapaa #3/GU:44 GLU
    44961 
    44962 Using Dunbrack library 
    44963 mutadedModel #3/GU SER 44: phi -69.1, psi -39.0 trans 
    44964 Applying GLU rotamer (chi angles: -170.6 -83.2 -53.7) to mutadedModel #3/GU
    44965 GLU 44 
    44966 
    44967 > color #3/GU:44 yellow
    44968 
    44969 > swapaa #3/GU:50 GLN
    44970 
    44971 Using Dunbrack library 
    44972 mutadedModel #3/GU ARG 50: phi -75.7, psi -30.7 trans 
    44973 Applying GLN rotamer (chi angles: -174.4 63.6 74.3) to mutadedModel #3/GU GLN
    44974 50 
    44975 
    44976 > color #3/GU:50 yellow
    44977 
    44978 > swapaa #3/GU:51 LYS
    44979 
    44980 Using Dunbrack library 
    44981 mutadedModel #3/GU VAL 51: phi -69.3, psi -41.4 trans 
    44982 Applying LYS rotamer (chi angles: -70.1 179.3 -179.7 178.4) to mutadedModel
    44983 #3/GU LYS 51 
    44984 
    44985 > color #3/GU:51 yellow
    44986 
    44987 > swapaa #3/GU:53 ILE
    44988 
    44989 Using Dunbrack library 
    44990 mutadedModel #3/GU ASN 53: phi -79.3, psi -16.1 trans 
    44991 Applying ILE rotamer (chi angles: -67.1 168.8) to mutadedModel #3/GU ILE 53 
    44992 
    44993 > color #3/GU:53 yellow
    44994 
    44995 > swapaa #3/GU:54 LYS
    44996 
    44997 Using Dunbrack library 
    44998 mutadedModel #3/GU LEU 54: phi -97.1, psi -36.4 trans 
    44999 Applying LYS rotamer (chi angles: -68.9 177.2 70.3 68.7) to mutadedModel #3/GU
    45000 LYS 54 
    45001 
    45002 > color #3/GU:54 yellow
    45003 
    45004 > swapaa #3/GU:55 ALA
    45005 
    45006 Using Dunbrack library 
    45007 Swapping mutadedModel #3/GU SER 55 to ALA 
    45008 
    45009 > color #3/GU:55 yellow
    45010 
    45011 > swapaa #3/GU:57 LYS
    45012 
    45013 Using Dunbrack library 
    45014 mutadedModel #3/GU ASN 57: phi -123.4, psi 17.8 trans 
    45015 Applying LYS rotamer (chi angles: -61.5 -65.8 -173.6 -67.0) to mutadedModel
    45016 #3/GU LYS 57 
    45017 
    45018 > color #3/GU:57 yellow
    45019 
    45020 > swapaa #3/GU:59 ASP
    45021 
    45022 Using Dunbrack library 
    45023 mutadedModel #3/GU SER 59: phi -80.4, psi 135.9 trans 
    45024 Applying ASP rotamer (chi angles: 61.5 61.2) to mutadedModel #3/GU ASP 59 
    45025 
    45026 > color #3/GU:59 yellow
    45027 
    45028 > swapaa #3/GU:60 TYR
    45029 
    45030 Using Dunbrack library 
    45031 mutadedModel #3/GU ARG 60: phi -111.4, psi 24.2 trans 
    45032 Applying TYR rotamer (chi angles: 55.4 27.1) to mutadedModel #3/GU TYR 60 
    45033 
    45034 > color #3/GU:60 yellow
    45035 
    45036 > swapaa #3/GU:62 ALA
    45037 
    45038 Using Dunbrack library 
    45039 Swapping mutadedModel #3/GU ASP 62 to ALA 
    45040 
    45041 > color #3/GU:62 yellow
    45042 
    45043 > swapaa #3/GU:63 LEU
    45044 
    45045 Using Dunbrack library 
    45046 mutadedModel #3/GU MET 63: phi -73.5, psi -18.8 trans 
    45047 Applying LEU rotamer (chi angles: -87.6 57.9) to mutadedModel #3/GU LEU 63 
    45048 
    45049 > color #3/GU:63 yellow
    45050 
    45051 > swapaa #3/GU:64 LEU
    45052 
    45053 Using Dunbrack library 
    45054 mutadedModel #3/GU ARG 64: phi -84.0, psi 0.3 trans 
    45055 Applying LEU rotamer (chi angles: -177.2 60.0) to mutadedModel #3/GU LEU 64 
    45056 
    45057 > color #3/GU:64 yellow
    45058 
    45059 > swapaa #3/GU:65 ALA
    45060 
    45061 Using Dunbrack library 
    45062 Swapping mutadedModel #3/GU GLY 65 to ALA 
    45063 
    45064 > color #3/GU:65 yellow
    45065 
    45066 > swapaa #3/GU:66 LEU
    45067 
    45068 Using Dunbrack library 
    45069 mutadedModel #3/GU ASN 66: phi -71.2, psi 143.2 trans 
    45070 Applying LEU rotamer (chi angles: -175.2 66.1) to mutadedModel #3/GU LEU 66 
    45071 
    45072 > color #3/GU:66 yellow
    45073 
    45074 > swapaa #3/GU:67 PRO
    45075 
    45076 Using Dunbrack library 
    45077 mutadedModel #3/GU ASP 67: phi -91.8, psi 130.6 trans 
    45078 Applying PRO rotamer (chi angles: 30.4 -32.4) to mutadedModel #3/GU PRO 67 
    45079 
    45080 > color #3/GU:67 yellow
    45081 
    45082 > swapaa #3/GU:68 VAL
    45083 
    45084 Using Dunbrack library 
    45085 mutadedModel #3/GU GLY 68: phi -68.9, psi 85.9 trans 
    45086 Applying VAL rotamer (chi angles: 64.4) to mutadedModel #3/GU VAL 68 
    45087 
    45088 > color #3/GU:68 yellow
    45089 
    45090 > swapaa #3/GU:69 THR
    45091 
    45092 Using Dunbrack library 
    45093 mutadedModel #3/GU ILE 69: phi -134.0, psi 23.9 trans 
    45094 Applying THR rotamer (chi angles: -60.3) to mutadedModel #3/GU THR 69 
    45095 
    45096 > color #3/GU:69 yellow
    45097 
    45098 > swapaa #3/GU:70 ASP
    45099 
    45100 Using Dunbrack library 
    45101 mutadedModel #3/GU SER 70: phi -86.8, psi 169.6 trans 
    45102 Applying ASP rotamer (chi angles: -161.9 85.1) to mutadedModel #3/GU ASP 70 
    45103 
    45104 > color #3/GU:70 yellow
    45105 
    45106 > swapaa #3/GU:71 HIS
    45107 
    45108 Using Dunbrack library 
    45109 mutadedModel #3/GU PHE 71: phi -80.5, psi -28.4 trans 
    45110 Applying HIS rotamer (chi angles: -174.6 -25.0) to mutadedModel #3/GU HIS 71 
    45111 
    45112 > color #3/GU:71 yellow
    45113 
    45114 > swapaa #3/GU:73 HIS
    45115 
    45116 Using Dunbrack library 
    45117 mutadedModel #3/GU PHE 73: phi -82.0, psi 122.7 trans 
    45118 Applying HIS rotamer (chi angles: -174.6 -73.4) to mutadedModel #3/GU HIS 73 
    45119 
    45120 > color #3/GU:73 yellow
    45121 
    45122 > swapaa #3/GU:75 TYR
    45123 
    45124 Using Dunbrack library 
    45125 mutadedModel #3/GU PHE 75: phi -115.3, psi 78.4 trans 
    45126 Applying TYR rotamer (chi angles: -60.8 120.3) to mutadedModel #3/GU TYR 75 
    45127 
    45128 > color #3/GU:75 yellow
    45129 
    45130 > swapaa #3/GU:76 LYS
    45131 
    45132 Using Dunbrack library 
    45133 mutadedModel #3/GU ASN 76: phi -142.4, psi 74.4 trans 
    45134 Applying LYS rotamer (chi angles: -146.7 -61.9 97.2 56.3) to mutadedModel
    45135 #3/GU LYS 76 
    45136 
    45137 > color #3/GU:76 yellow
    45138 
    45139 > swapaa #3/GU:77 MET
    45140 
    45141 Using Dunbrack library 
    45142 mutadedModel #3/GU GLN 77: phi -91.0, psi 122.0 trans 
    45143 Applying MET rotamer (chi angles: -59.7 -61.6 -67.7) to mutadedModel #3/GU MET
    45144 77 
    45145 
    45146 > color #3/GU:77 yellow
    45147 
    45148 > swapaa #3/GU:78 GLU
    45149 
    45150 Using Dunbrack library 
    45151 mutadedModel #3/GU VAL 78: phi -88.2, psi 149.8 trans 
    45152 Applying GLU rotamer (chi angles: -64.3 83.0 -8.1) to mutadedModel #3/GU GLU
    45153 78 
    45154 
    45155 > color #3/GU:78 yellow
    45156 
    45157 > swapaa #3/GU:79 TYR
    45158 
    45159 Using Dunbrack library 
    45160 mutadedModel #3/GU HIS 79: phi -88.7, psi 163.5 trans 
    45161 Applying TYR rotamer (chi angles: -68.2 68.9) to mutadedModel #3/GU TYR 79 
    45162 
    45163 > color #3/GU:79 yellow
    45164 
    45165 > swapaa #3/GU:82 GLU
    45166 
    45167 Using Dunbrack library 
    45168 mutadedModel #3/GU ASN 82: phi -78.9, psi -27.8 trans 
    45169 Applying GLU rotamer (chi angles: -67.4 179.1 -65.6) to mutadedModel #3/GU GLU
    45170 82 
    45171 
    45172 > color #3/GU:82 yellow
    45173 
    45174 > swapaa #3/GU:83 LYS
    45175 
    45176 Using Dunbrack library 
    45177 mutadedModel #3/GU PHE 83: phi -77.4, psi -22.0 trans 
    45178 Applying LYS rotamer (chi angles: -68.6 -177.5 175.0 65.8) to mutadedModel
    45179 #3/GU LYS 83 
    45180 
    45181 > color #3/GU:83 yellow
    45182 
    45183 > swapaa #3/GU:85 MET
    45184 
    45185 Using Dunbrack library 
    45186 mutadedModel #3/GU ILE 85: phi -63.2, psi -43.3 trans 
    45187 Applying MET rotamer (chi angles: -69.5 -61.0 -67.4) to mutadedModel #3/GU MET
    45188 85 
    45189 
    45190 > color #3/GU:85 yellow
    45191 
    45192 > swapaa #3/GU:87 SER
    45193 
    45194 Using Dunbrack library 
    45195 mutadedModel #3/GU THR 87: phi -81.4, psi 149.3 trans 
    45196 Applying SER rotamer (chi angles: 65.0) to mutadedModel #3/GU SER 87 
    45197 
    45198 > color #3/GU:87 yellow
    45199 
    45200 > swapaa #3/GU:88 ASP
    45201 
    45202 Using Dunbrack library 
    45203 mutadedModel #3/GU SER 88: phi -62.3, psi 130.2 trans 
    45204 Applying ASP rotamer (chi angles: -173.9 85.4) to mutadedModel #3/GU ASP 88 
    45205 
    45206 > color #3/GU:88 yellow
    45207 
    45208 > swapaa #3/GU:89 ALA
    45209 
    45210 Using Dunbrack library 
    45211 Swapping mutadedModel #3/GU PRO 89 to ALA 
    45212 
    45213 > color #3/GU:89 yellow
    45214 
    45215 > swapaa #3/GU:90 ARG
    45216 
    45217 Using Dunbrack library 
    45218 mutadedModel #3/GU GLU 90: phi -79.4, psi 4.1 trans 
    45219 Applying ARG rotamer (chi angles: 178.6 65.7 -178.3 83.5) to mutadedModel
    45220 #3/GU ARG 90 
    45221 
    45222 > color #3/GU:90 yellow
    45223 
    45224 > swapaa #3/GU:93 GLY
    45225 
    45226 Using Dunbrack library 
    45227 Swapping mutadedModel #3/GU SER 93 to GLY 
    45228 
    45229 > color #3/GU:93 yellow
    45230 
    45231 > swapaa #3/GU:94 PHE
    45232 
    45233 Using Dunbrack library 
    45234 mutadedModel #3/GU LYS 94: phi -169.6, psi -45.0 trans 
    45235 Applying PHE rotamer (chi angles: -178.6 77.3) to mutadedModel #3/GU PHE 94 
    45236 
    45237 > color #3/GU:94 yellow
    45238 
    45239 > swapaa #3/GU:97 LYS
    45240 
    45241 Using Dunbrack library 
    45242 mutadedModel #3/GU ARG 97: phi -82.7, psi -36.3 trans 
    45243 Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to mutadedModel
    45244 #3/GU LYS 97 
    45245 
    45246 > color #3/GU:97 yellow
    45247 
    45248 > swapaa #3/GU:99 TYR
    45249 
    45250 Using Dunbrack library 
    45251 mutadedModel #3/GU TRP 99: phi -61.0, psi -46.8 trans 
    45252 Applying TYR rotamer (chi angles: 177.2 79.4) to mutadedModel #3/GU TYR 99 
    45253 
    45254 > color #3/GU:99 yellow
    45255 
    45256 > swapaa #3/GU:101 SER
    45257 
    45258 Using Dunbrack library 
    45259 mutadedModel #3/GU GLU 101: phi -70.3, psi -41.2 trans 
    45260 Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/GU SER 101 
    45261 
    45262 > color #3/GU:101 yellow
    45263 
    45264 > swapaa #3/GU:102 LYS
    45265 
    45266 Using Dunbrack library 
    45267 mutadedModel #3/GU SER 102: phi -63.1, psi -34.3 trans 
    45268 Applying LYS rotamer (chi angles: 66.8 -172.4 -70.3 -174.3) to mutadedModel
    45269 #3/GU LYS 102 
    45270 
    45271 > color #3/GU:102 yellow
    45272 
    45273 > swapaa #3/GU:103 MET
    45274 
    45275 Using Dunbrack library 
    45276 mutadedModel #3/GU LYS 103: phi -77.5, psi -35.1 trans 
    45277 Applying MET rotamer (chi angles: -65.7 -60.7 97.8) to mutadedModel #3/GU MET
    45278 103 
    45279 
    45280 > color #3/GU:103 yellow
    45281 
    45282 > swapaa #3/GU:105 CYS
    45283 
    45284 Using Dunbrack library 
    45285 mutadedModel #3/GU ASN 105: phi -71.4, psi -39.0 trans 
    45286 Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/GU CYS 105 
    45287 
    45288 > color #3/GU:105 yellow
    45289 
    45290 > swapaa #3/GU:106 PHE
    45291 
    45292 Using Dunbrack library 
    45293 mutadedModel #3/GU TYR 106: phi -64.0, psi -14.4 trans 
    45294 Applying PHE rotamer (chi angles: -177.2 21.0) to mutadedModel #3/GU PHE 106 
    45295 
    45296 > color #3/GU:106 yellow
    45297 
    45298 > swapaa #3/GU:108 GLU
    45299 
    45300 Using Dunbrack library 
    45301 mutadedModel #3/GU LEU 108: phi -78.7, psi -21.2 trans 
    45302 Applying GLU rotamer (chi angles: -65.4 -65.0 -42.6) to mutadedModel #3/GU GLU
    45303 108 
    45304 
    45305 > color #3/GU:108 yellow
    45306 
    45307 > swapaa #3/GU:109 GLY
    45308 
    45309 Using Dunbrack library 
    45310 Swapping mutadedModel #3/GU ALA 109 to GLY 
    45311 
    45312 > color #3/GU:109 yellow
    45313 
    45314 > swapaa #3/GU:110 LEU
    45315 
    45316 Using Dunbrack library 
    45317 mutadedModel #3/GU ILE 110: phi -73.7, psi 40.3 trans 
    45318 Applying LEU rotamer (chi angles: -172.5 -73.2) to mutadedModel #3/GU LEU 110 
    45319 
    45320 > color #3/GU:110 yellow
    45321 
    45322 > swapaa #3/GU:111 GLN
    45323 
    45324 Using Dunbrack library 
    45325 mutadedModel #3/GU MET 111: phi -48.5, psi 9.9 trans 
    45326 Applying GLN rotamer (chi angles: 68.1 -86.0 30.6) to mutadedModel #3/GU GLN
    45327 111 
    45328 
    45329 > color #3/GU:111 yellow
    45330 
    45331 > swapaa #3/GU:113 HIS
    45332 
    45333 Using Dunbrack library 
    45334 mutadedModel #3/GU ILE 113: phi -76.1, psi -29.3 trans 
    45335 Applying HIS rotamer (chi angles: 66.2 76.1) to mutadedModel #3/GU HIS 113 
    45336 
    45337 > color #3/GU:113 yellow
    45338 
    45339 > swapaa #3/GU:114 LYS
    45340 
    45341 Using Dunbrack library 
    45342 mutadedModel #3/GU GLY 114: phi -89.5, psi -6.2 trans 
    45343 Applying LYS rotamer (chi angles: -67.9 178.9 70.3 68.8) to mutadedModel #3/GU
    45344 LYS 114 
    45345 
    45346 > color #3/GU:114 yellow
    45347 
    45348 > swapaa #3/GU:115 TRP
    45349 
    45350 Using Dunbrack library 
    45351 mutadedModel #3/GU GLY 115: phi 36.1, psi -80.8 trans 
    45352 Applying TRP rotamer (chi angles: 61.1 -1.2) to mutadedModel #3/GU TRP 115 
    45353 
    45354 > color #3/GU:115 yellow
    45355 
    45356 > swapaa #3/GU:117 CYS
    45357 
    45358 Using Dunbrack library 
    45359 mutadedModel #3/GU VAL 117: phi -95.2, psi 138.2 trans 
    45360 Applying CYS rotamer (chi angles: -63.5) to mutadedModel #3/GU CYS 117 
    45361 
    45362 > color #3/GU:117 yellow
    45363 
    45364 > swapaa #3/GU:118 LEU
    45365 
    45366 Using Dunbrack library 
    45367 mutadedModel #3/GU PRO 118: phi -104.9, psi 103.6 trans 
    45368 Applying LEU rotamer (chi angles: 61.4 80.5) to mutadedModel #3/GU LEU 118 
    45369 
    45370 > color #3/GU:118 yellow
    45371 
    45372 > swapaa #3/GU:119 GLN
    45373 
    45374 Using Dunbrack library 
    45375 mutadedModel #3/GU LEU 119: phi -15.0, psi -25.6 trans 
    45376 Applying GLN rotamer (chi angles: -176.3 65.5 76.0) to mutadedModel #3/GU GLN
    45377 119 
    45378 
    45379 > color #3/GU:119 yellow
    45380 
    45381 > swapaa #3/GU:120 ASP
    45382 
    45383 Using Dunbrack library 
    45384 mutadedModel #3/GU THR 120: phi -87.5, psi -13.8 trans 
    45385 Applying ASP rotamer (chi angles: -166.2 -33.8) to mutadedModel #3/GU ASP 120 
    45386 
    45387 > color #3/GU:120 yellow
    45388 
    45389 > swapaa #3/GU:121 ASP
    45390 
    45391 Using Dunbrack library 
    45392 mutadedModel #3/GU ARG 121: phi -82.9, psi -9.5 trans 
    45393 Applying ASP rotamer (chi angles: 62.7 -0.3) to mutadedModel #3/GU ASP 121 
    45394 
    45395 > color #3/GU:121 yellow
    45396 
    45397 > swapaa #3/GU:123 ILE
    45398 
    45399 Using Dunbrack library 
    45400 mutadedModel #3/GU LEU 123: phi -67.3, psi 143.0 trans 
    45401 Applying ILE rotamer (chi angles: -166.6 167.1) to mutadedModel #3/GU ILE 123 
    45402 
    45403 > color #3/GU:123 yellow
    45404 
    45405 > swapaa #3/GU:125 ALA
    45406 
    45407 Using Dunbrack library 
    45408 Swapping mutadedModel #3/GU CYS 125 to ALA 
    45409 
    45410 > color #3/GU:125 yellow
    45411 
    45412 > swapaa #3/GU:126 HIS
    45413 
    45414 Using Dunbrack library 
    45415 mutadedModel #3/GU ALA 126: phi -115.2, psi -11.0 trans 
    45416 Applying HIS rotamer (chi angles: -175.6 -108.3) to mutadedModel #3/GU HIS 126 
    45417 
    45418 > color #3/GU:126 yellow
    45419 
    45420 > swapaa #3/GU:128 TRP
    45421 
    45422 Using Dunbrack library 
    45423 mutadedModel #3/GU TYR 128: phi -69.6, psi -24.0 trans 
    45424 Applying TRP rotamer (chi angles: 62.2 104.0) to mutadedModel #3/GU TRP 128 
    45425 
    45426 > color #3/GU:128 yellow
    45427 
    45428 > swapaa #3/GU:130 ASN
    45429 
    45430 Using Dunbrack library 
    45431 mutadedModel #3/GU ASP 130: phi -88.1, psi -34.0 trans 
    45432 Applying ASN rotamer (chi angles: 63.6 -138.0) to mutadedModel #3/GU ASN 130 
    45433 
    45434 > color #3/GU:130 yellow
    45435 
    45436 > swapaa #3/GU:132 ALA
    45437 
    45438 Using Dunbrack library 
    45439 Swapping mutadedModel #3/GU SER 132 to ALA 
    45440 
    45441 > color #3/GU:132 yellow
    45442 
    45443 > swapaa #3/GU:133 ALA
    45444 
    45445 Using Dunbrack library 
    45446 Swapping mutadedModel #3/GU SER 133 to ALA 
    45447 
    45448 > color #3/GU:133 yellow
    45449 
    45450 > swapaa #3/GU:135 THR
    45451 
    45452 Using Dunbrack library 
    45453 mutadedModel #3/GU VAL 135: phi -63.5, psi -39.7 trans 
    45454 Applying THR rotamer (chi angles: -61.5) to mutadedModel #3/GU THR 135 
    45455 
    45456 > color #3/GU:135 yellow
    45457 
    45458 > swapaa #3/GU:137 ALA
    45459 
    45460 Using Dunbrack library 
    45461 Swapping mutadedModel #3/GU GLY 137 to ALA 
    45462 
    45463 > color #3/GU:137 yellow
    45464 
    45465 > swapaa #3/GU:138 PRO
    45466 
    45467 Using Dunbrack library 
    45468 mutadedModel #3/GU LYS 138: phi -51.7, psi 132.2 trans 
    45469 Applying PRO rotamer (chi angles: -29.7 39.1) to mutadedModel #3/GU PRO 138 
    45470 
    45471 > color #3/GU:138 yellow
    45472 
    45473 > swapaa #3/GU:139 LYS
    45474 
    45475 Using Dunbrack library 
    45476 mutadedModel #3/GU PHE 139: phi -79.4, psi -23.4 trans 
    45477 Applying LYS rotamer (chi angles: -63.7 -63.8 -174.4 -67.0) to mutadedModel
    45478 #3/GU LYS 139 
    45479 
    45480 > color #3/GU:139 yellow
    45481 
    45482 > swapaa #3/GU:140 ASP
    45483 
    45484 Using Dunbrack library 
    45485 mutadedModel #3/GU HIS 140: phi -80.5, psi -36.3 trans 
    45486 Applying ASP rotamer (chi angles: 57.9 -18.4) to mutadedModel #3/GU ASP 140 
    45487 
    45488 > color #3/GU:140 yellow
    45489 
    45490 > swapaa #3/GU:141 LYS
    45491 
    45492 Using Dunbrack library 
    45493 mutadedModel #3/GU GLU 141: phi -60.7, psi -35.0 trans 
    45494 Applying LYS rotamer (chi angles: -70.5 -179.1 -177.8 -64.9) to mutadedModel
    45495 #3/GU LYS 141 
    45496 
    45497 > color #3/GU:141 yellow
    45498 
    45499 > swapaa #3/GU:142 ILE
    45500 
    45501 Using Dunbrack library 
    45502 mutadedModel #3/GU THR 142: phi -70.5, psi -39.7 trans 
    45503 Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/GU ILE 142 
    45504 
    45505 > color #3/GU:142 yellow
    45506 
    45507 > swapaa #3/GU:144 HIS
    45508 
    45509 Using Dunbrack library 
    45510 mutadedModel #3/GU PHE 144: phi -72.5, psi -34.9 trans 
    45511 Applying HIS rotamer (chi angles: -70.1 81.9) to mutadedModel #3/GU HIS 144 
    45512 
    45513 > color #3/GU:144 yellow
    45514 
    45515 > swapaa #3/GU:146 ASP
    45516 
    45517 Using Dunbrack library 
    45518 mutadedModel #3/GU ALA 146: phi -77.1, psi -36.9 trans 
    45519 Applying ASP rotamer (chi angles: -68.4 -18.4) to mutadedModel #3/GU ASP 146 
    45520 
    45521 > color #3/GU:146 yellow
    45522 
    45523 > swapaa #3/GU:149 VAL
    45524 
    45525 Using Dunbrack library 
    45526 mutadedModel #3/GU THR 149: phi -73.0, psi -36.8 trans 
    45527 Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/GU VAL 149 
    45528 
    45529 > color #3/GU:149 yellow
    45530 
    45531 > swapaa #3/GU:150 MET
    45532 
    45533 Using Dunbrack library 
    45534 mutadedModel #3/GU GLN 150: phi -58.9, psi -41.7 trans 
    45535 Applying MET rotamer (chi angles: -69.1 174.7 69.8) to mutadedModel #3/GU MET
    45536 150 
    45537 
    45538 > color #3/GU:150 yellow
    45539 
    45540 > swapaa #3/GU:156 LYS
    45541 
    45542 Using Dunbrack library 
    45543 mutadedModel #3/GU PHE 156: phi -94.3, psi -16.1 trans 
    45544 Applying LYS rotamer (chi angles: 51.3 89.3 70.7 178.4) to mutadedModel #3/GU
    45545 LYS 156 
    45546 
    45547 > color #3/GU:156 yellow
    45548 
    45549 > swapaa #3/GU:157 ASP
    45550 
    45551 Using Dunbrack library 
    45552 mutadedModel #3/GU LEU 157: phi -80.4, psi -26.6 trans 
    45553 Applying ASP rotamer (chi angles: -67.9 -19.5) to mutadedModel #3/GU ASP 157 
    45554 
    45555 > color #3/GU:157 yellow
    45556 
    45557 > swapaa #3/GU:158 LYS
    45558 
    45559 Using Dunbrack library 
    45560 mutadedModel #3/GU PHE 158: phi -95.6, psi -14.3 trans 
    45561 Applying LYS rotamer (chi angles: -65.2 -179.1 179.6 178.6) to mutadedModel
    45562 #3/GU LYS 158 
    45563 
    45564 > color #3/GU:158 yellow
    45565 
    45566 > swapaa #3/GU:159 TYR
    45567 
    45568 Using Dunbrack library 
    45569 mutadedModel #3/GU ARG 159: phi 57.3, psi 34.8 trans 
    45570 Applying TYR rotamer (chi angles: -58.8 79.2) to mutadedModel #3/GU TYR 159 
    45571 
    45572 > color #3/GU:159 yellow
    45573 
    45574 > swapaa #3/GU:161 TYR
    45575 
    45576 Using Dunbrack library 
    45577 mutadedModel #3/GU HIS 161: phi -71.4, psi 170.9 trans 
    45578 Applying TYR rotamer (chi angles: -69.2 98.8) to mutadedModel #3/GU TYR 161 
    45579 
    45580 > color #3/GU:161 yellow
    45581 
    45582 > swapaa #3/GU:162 GLU
    45583 
    45584 Using Dunbrack library 
    45585 mutadedModel #3/GU ASP 162: phi -91.1, psi 153.1 trans 
    45586 Applying GLU rotamer (chi angles: -174.7 67.4 -12.0) to mutadedModel #3/GU GLU
    45587 162 
    45588 
    45589 > color #3/GU:162 yellow
    45590 
    45591 > swapaa #3/GU:167 TRP
    45592 
    45593 Using Dunbrack library 
    45594 mutadedModel #3/GU CYS 167: phi -59.7, psi 129.0 trans 
    45595 Applying TRP rotamer (chi angles: 58.5 -141.3) to mutadedModel #3/GU TRP 167 
    45596 
    45597 > color #3/GU:167 yellow
    45598 
    45599 > swapaa #3/GU:171 VAL
    45600 
    45601 Using Dunbrack library 
    45602 mutadedModel #3/GU THR 171: phi -83.7, psi -7.5 trans 
    45603 Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/GU VAL 171 
    45604 
    45605 > color #3/GU:171 yellow
    45606 
    45607 > swapaa #3/GU:172 ASP
    45608 
    45609 Using Dunbrack library 
    45610 mutadedModel #3/GU VAL 172: phi -99.2, psi -42.5 trans 
    45611 Applying ASP rotamer (chi angles: -64.3 -52.5) to mutadedModel #3/GU ASP 172 
    45612 
    45613 > color #3/GU:172 yellow
    45614 
    45615 > swapaa #3/GU:173 ASN
    45616 
    45617 Using Dunbrack library 
    45618 mutadedModel #3/GU ASP 173: phi -39.0, psi 57.1 trans 
    45619 Applying ASN rotamer (chi angles: -69.1 -84.9) to mutadedModel #3/GU ASN 173 
    45620 
    45621 > color #3/GU:173 yellow
    45622 
    45623 > swapaa #3/GU:180 TYR
    45624 
    45625 Using Dunbrack library 
    45626 mutadedModel #3/GU ARG 180: phi -73.6, psi -10.6 trans 
    45627 Applying TYR rotamer (chi angles: -70.2 -17.0) to mutadedModel #3/GU TYR 180 
    45628 
    45629 > color #3/GU:180 yellow
    45630 
    45631 > swapaa #3/GU:183 MET
    45632 
    45633 Using Dunbrack library 
    45634 mutadedModel #3/GU ARG 183: phi -76.1, psi -41.4 trans 
    45635 Applying MET rotamer (chi angles: -67.5 176.5 70.8) to mutadedModel #3/GU MET
    45636 183 
    45637 
    45638 > color #3/GU:183 yellow
    45639 
    45640 > swapaa #3/GU:186 ASP
    45641 
    45642 Using Dunbrack library 
    45643 mutadedModel #3/GU LEU 186: phi -78.1, psi -10.2 trans 
    45644 Applying ASP rotamer (chi angles: -166.9 56.7) to mutadedModel #3/GU ASP 186 
    45645 
    45646 > color #3/GU:186 yellow
    45647 
    45648 > swapaa #3/GU:187 GLU
    45649 
    45650 Using Dunbrack library 
    45651 mutadedModel #3/GU LEU 187: phi -77.2, psi -72.2 trans 
    45652 Applying GLU rotamer (chi angles: -68.3 -64.5 -47.0) to mutadedModel #3/GU GLU
    45653 187 
    45654 
    45655 > color #3/GU:187 yellow
    45656 
    45657 > swapaa #3/GU:188 TRP
    45658 
    45659 Using Dunbrack library 
    45660 mutadedModel #3/GU TYR 188: phi 1.2, psi 1.9 trans 
    45661 Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/GU TRP 188 
    45662 
    45663 > color #3/GU:188 yellow
    45664 
    45665 > swapaa #3/GU:189 GLU
    45666 
    45667 Using Dunbrack library 
    45668 mutadedModel #3/GU MET 189: phi -144.3, psi 27.3 trans 
    45669 Applying GLU rotamer (chi angles: 59.4 178.7 -1.2) to mutadedModel #3/GU GLU
    45670 189 
    45671 
    45672 > color #3/GU:189 yellow
    45673 
    45674 > swapaa #3/GU:190 GLU
    45675 
    45676 Using Dunbrack library 
    45677 mutadedModel #3/GU THR 190: phi -91.8, psi -29.1 trans 
    45678 Applying GLU rotamer (chi angles: -170.7 -83.6 -83.7) to mutadedModel #3/GU
    45679 GLU 190 
    45680 
    45681 > color #3/GU:190 yellow
    45682 
    45683 > swapaa #3/GU:191 LYS
    45684 
    45685 Using Dunbrack library 
    45686 mutadedModel #3/GU ARG 191: phi -73.8, psi -76.0 trans 
    45687 Applying LYS rotamer (chi angles: -66.4 -169.7 -76.7 76.9) to mutadedModel
    45688 #3/GU LYS 191 
    45689 
    45690 > color #3/GU:191 yellow
    45691 
    45692 > swapaa #3/GU:192 TRP
    45693 
    45694 Using Dunbrack library 
    45695 mutadedModel #3/GU HIS 192: phi 155.1, psi 157.3 trans 
    45696 Applying TRP rotamer (chi angles: -177.6 106.8) to mutadedModel #3/GU TRP 192 
    45697 
    45698 > color #3/GU:192 yellow
    45699 
    45700 > swapaa #3/GU:194 PHE
    45701 
    45702 Using Dunbrack library 
    45703 mutadedModel #3/GU TRP 194: phi -94.2, psi 8.4 trans 
    45704 Applying PHE rotamer (chi angles: -66.8 -20.2) to mutadedModel #3/GU PHE 194 
    45705 
    45706 > color #3/GU:194 yellow
    45707 
    45708 > swapaa #3/GU:195 PHE
    45709 
    45710 Using Dunbrack library 
    45711 mutadedModel #3/GU HIS 195: phi -113.9, psi 4.1 trans 
    45712 Applying PHE rotamer (chi angles: -171.4 72.7) to mutadedModel #3/GU PHE 195 
    45713 
    45714 > color #3/GU:195 yellow
    45715 
    45716 > swapaa #3/GU:199 GLU
    45717 
    45718 Using Dunbrack library 
    45719 mutadedModel #3/GU LEU 199: phi -101.7, psi -37.8 trans 
    45720 Applying GLU rotamer (chi angles: -178.2 65.1 20.3) to mutadedModel #3/GU GLU
    45721 199 
    45722 
    45723 > color #3/GU:199 yellow
    45724 
    45725 > swapaa #3/GU:200 VAL
    45726 
    45727 Using Dunbrack library 
    45728 mutadedModel #3/GU SER 200: phi -109.0, psi 152.3 trans 
    45729 Applying VAL rotamer (chi angles: -62.1) to mutadedModel #3/GU VAL 200 
    45730 
    45731 > color #3/GU:200 yellow
    45732 
    45733 > swapaa #3/GU:201 GLU
    45734 
    45735 Using Dunbrack library 
    45736 mutadedModel #3/GU ASN 201: phi -92.1, psi 125.5 trans 
    45737 Applying GLU rotamer (chi angles: 61.3 86.8 -38.7) to mutadedModel #3/GU GLU
    45738 201 
    45739 
    45740 > color #3/GU:201 yellow
    45741 
    45742 > swapaa #3/GU:202 TYR
    45743 
    45744 Using Dunbrack library 
    45745 mutadedModel #3/GU THR 202: phi -108.5, psi 14.2 trans 
    45746 Applying TYR rotamer (chi angles: -63.6 9.2) to mutadedModel #3/GU TYR 202 
    45747 
    45748 > color #3/GU:202 yellow
    45749 
    45750 > color #3/GU:203 cyan
    45751 
    45752 > select #3/FL
    45753 
    45754 508 atoms, 518 bonds, 65 residues, 1 model selected 
    45755 
    45756 > bond #3/FL:45@C #3/FL:46@N reasonable false
    45757 
    45758 Created 0 bonds 
    45759 
    45760 > bond #3/FL:46@C #3/FL:47@N reasonable false
    45761 
    45762 Created 0 bonds 
    45763 
    45764 > bond #3/FL:47@C #3/FL:48@N reasonable false
    45765 
    45766 Created 0 bonds 
    45767 
    45768 > bond #3/FL:48@C #3/FL:49@N reasonable false
    45769 
    45770 Created 0 bonds 
    45771 
    45772 > bond #3/FL:49@C #3/FL:50@N reasonable false
    45773 
    45774 Created 0 bonds 
    45775 
    45776 > bond #3/FL:50@C #3/FL:51@N reasonable false
    45777 
    45778 Created 0 bonds 
    45779 
    45780 > bond #3/FL:51@C #3/FL:52@N reasonable false
    45781 
    45782 Created 0 bonds 
    45783 
    45784 > bond #3/FL:52@C #3/FL:53@N reasonable false
    45785 
    45786 Created 0 bonds 
    45787 
    45788 > bond #3/FL:53@C #3/FL:54@N reasonable false
    45789 
    45790 Created 0 bonds 
    45791 
    45792 > bond #3/FL:54@C #3/FL:55@N reasonable false
    45793 
    45794 Created 0 bonds 
    45795 
    45796 > bond #3/FL:55@C #3/FL:56@N reasonable false
    45797 
    45798 Created 0 bonds 
    45799 
    45800 > bond #3/FL:56@C #3/FL:57@N reasonable false
    45801 
    45802 Created 0 bonds 
    45803 
    45804 > bond #3/FL:57@C #3/FL:58@N reasonable false
    45805 
    45806 Created 0 bonds 
    45807 
    45808 > bond #3/FL:58@C #3/FL:59@N reasonable false
    45809 
    45810 Created 0 bonds 
    45811 
    45812 > bond #3/FL:59@C #3/FL:60@N reasonable false
    45813 
    45814 Created 0 bonds 
    45815 
    45816 > bond #3/FL:60@C #3/FL:61@N reasonable false
    45817 
    45818 Created 0 bonds 
    45819 
    45820 > bond #3/FL:61@C #3/FL:62@N reasonable false
    45821 
    45822 Created 0 bonds 
    45823 
    45824 > bond #3/FL:62@C #3/FL:63@N reasonable false
    45825 
    45826 Created 0 bonds 
    45827 
    45828 > bond #3/FL:63@C #3/FL:64@N reasonable false
    45829 
    45830 Created 0 bonds 
    45831 
    45832 > bond #3/FL:64@C #3/FL:65@N reasonable false
    45833 
    45834 Created 0 bonds 
    45835 
    45836 > bond #3/FL:65@C #3/FL:66@N reasonable false
    45837 
    45838 Created 0 bonds 
    45839 
    45840 > bond #3/FL:66@C #3/FL:67@N reasonable false
    45841 
    45842 Created 0 bonds 
    45843 
    45844 > bond #3/FL:67@C #3/FL:68@N reasonable false
    45845 
    45846 Created 0 bonds 
    45847 
    45848 > bond #3/FL:68@C #3/FL:69@N reasonable false
    45849 
    45850 Created 0 bonds 
    45851 
    45852 > bond #3/FL:69@C #3/FL:70@N reasonable false
    45853 
    45854 Created 0 bonds 
    45855 
    45856 > bond #3/FL:4@C #3/FL:5@N reasonable false
    45857 
    45858 Created 0 bonds 
    45859 
    45860 > bond #3/FL:5@C #3/FL:6@N reasonable false
    45861 
    45862 Created 0 bonds 
    45863 
    45864 > bond #3/FL:6@C #3/FL:7@N reasonable false
    45865 
    45866 Created 0 bonds 
    45867 
    45868 > bond #3/FL:7@C #3/FL:8@N reasonable false
    45869 
    45870 Created 0 bonds 
    45871 
    45872 > bond #3/FL:8@C #3/FL:9@N reasonable false
    45873 
    45874 Created 0 bonds 
    45875 
    45876 > bond #3/FL:9@C #3/FL:10@N reasonable false
    45877 
    45878 Created 0 bonds 
    45879 
    45880 > bond #3/FL:10@C #3/FL:11@N reasonable false
    45881 
    45882 Created 0 bonds 
    45883 
    45884 > bond #3/FL:11@C #3/FL:12@N reasonable false
    45885 
    45886 Created 0 bonds 
    45887 
    45888 > bond #3/FL:12@C #3/FL:13@N reasonable false
    45889 
    45890 Created 0 bonds 
    45891 
    45892 > bond #3/FL:13@C #3/FL:14@N reasonable false
    45893 
    45894 Created 0 bonds 
    45895 
    45896 > bond #3/FL:14@C #3/FL:15@N reasonable false
    45897 
    45898 Created 0 bonds 
    45899 
    45900 > bond #3/FL:15@C #3/FL:16@N reasonable false
    45901 
    45902 Created 0 bonds 
    45903 
    45904 > bond #3/FL:16@C #3/FL:17@N reasonable false
    45905 
    45906 Created 0 bonds 
    45907 
    45908 > bond #3/FL:17@C #3/FL:18@N reasonable false
    45909 
    45910 Created 0 bonds 
    45911 
    45912 > bond #3/FL:18@C #3/FL:19@N reasonable false
    45913 
    45914 Created 0 bonds 
    45915 
    45916 > bond #3/FL:19@C #3/FL:20@N reasonable false
    45917 
    45918 Created 0 bonds 
    45919 
    45920 > bond #3/FL:20@C #3/FL:21@N reasonable false
    45921 
    45922 Created 0 bonds 
    45923 
    45924 > bond #3/FL:21@C #3/FL:22@N reasonable false
    45925 
    45926 Created 0 bonds 
    45927 
    45928 > bond #3/FL:22@C #3/FL:23@N reasonable false
    45929 
    45930 Created 0 bonds 
    45931 
    45932 > bond #3/FL:23@C #3/FL:24@N reasonable false
    45933 
    45934 Created 0 bonds 
    45935 
    45936 > bond #3/FL:24@C #3/FL:25@N reasonable false
    45937 
    45938 Created 0 bonds 
    45939 
    45940 > bond #3/FL:25@C #3/FL:26@N reasonable false
    45941 
    45942 Created 0 bonds 
    45943 
    45944 > bond #3/FL:26@C #3/FL:27@N reasonable false
    45945 
    45946 Created 0 bonds 
    45947 
    45948 > bond #3/FL:27@C #3/FL:28@N reasonable false
    45949 
    45950 Created 0 bonds 
    45951 
    45952 > bond #3/FL:28@C #3/FL:29@N reasonable false
    45953 
    45954 Created 0 bonds 
    45955 
    45956 > bond #3/FL:29@C #3/FL:30@N reasonable false
    45957 
    45958 Created 0 bonds 
    45959 
    45960 > bond #3/FL:30@C #3/FL:31@N reasonable false
    45961 
    45962 Created 0 bonds 
    45963 
    45964 > bond #3/FL:31@C #3/FL:32@N reasonable false
    45965 
    45966 Created 0 bonds 
    45967 
    45968 > bond #3/FL:32@C #3/FL:33@N reasonable false
    45969 
    45970 Created 0 bonds 
    45971 
    45972 > bond #3/FL:33@C #3/FL:34@N reasonable false
    45973 
    45974 Created 0 bonds 
    45975 
    45976 > bond #3/FL:34@C #3/FL:35@N reasonable false
    45977 
    45978 Created 0 bonds 
    45979 
    45980 > bond #3/FL:35@C #3/FL:36@N reasonable false
    45981 
    45982 Created 0 bonds 
    45983 
    45984 > bond #3/FL:36@C #3/FL:37@N reasonable false
    45985 
    45986 Created 0 bonds 
    45987 
    45988 > bond #3/FL:39@C #3/FL:40@N reasonable false
    45989 
    45990 Created 0 bonds 
    45991 
    45992 > bond #3/FL:40@C #3/FL:41@N reasonable false
    45993 
    45994 Created 0 bonds 
    45995 
    45996 > bond #3/FL:41@C #3/FL:42@N reasonable false
    45997 
    45998 Created 0 bonds 
    45999 
    46000 > bond #3/FL:42@C #3/FL:43@N reasonable false
    46001 
    46002 Created 0 bonds 
    46003 
    46004 > swapaa #3/FL:4 ASP
    46005 
    46006 Using Dunbrack library 
    46007 mutadedModel #3/FL ALA 4: phi none, psi 153.5 trans 
    46008 Applying ASP rotamer (chi angles: -72.1 -12.7) to mutadedModel #3/FL ASP 4 
    46009 
    46010 > color #3/FL:4 yellow
    46011 
    46012 > swapaa #3/FL:6 VAL
    46013 
    46014 Using Dunbrack library 
    46015 mutadedModel #3/FL PRO 6: phi -112.8, psi 165.1 trans 
    46016 Applying VAL rotamer (chi angles: -60.6) to mutadedModel #3/FL VAL 6 
    46017 
    46018 > color #3/FL:6 yellow
    46019 
    46020 > swapaa #3/FL:7 ASP
    46021 
    46022 Using Dunbrack library 
    46023 mutadedModel #3/FL ASN 7: phi -98.5, psi 141.5 trans 
    46024 Applying ASP rotamer (chi angles: 62.4 -52.2) to mutadedModel #3/FL ASP 7 
    46025 
    46026 > color #3/FL:7 yellow
    46027 
    46028 > swapaa #3/FL:8 ILE
    46029 
    46030 Using Dunbrack library 
    46031 mutadedModel #3/FL THR 8: phi -96.3, psi -11.1 trans 
    46032 Applying ILE rotamer (chi angles: 64.0 170.4) to mutadedModel #3/FL ILE 8 
    46033 
    46034 > color #3/FL:8 yellow
    46035 
    46036 > swapaa #3/FL:9 LYS
    46037 
    46038 Using Dunbrack library 
    46039 mutadedModel #3/FL ARG 9: phi -65.9, psi -44.2 trans 
    46040 Applying LYS rotamer (chi angles: -176.2 175.4 -179.9 180.0) to mutadedModel
    46041 #3/FL LYS 9 
    46042 
    46043 > color #3/FL:9 yellow
    46044 
    46045 > swapaa #3/FL:10 LEU
    46046 
    46047 Using Dunbrack library 
    46048 mutadedModel #3/FL ASP 10: phi -61.3, psi -43.1 trans 
    46049 Applying LEU rotamer (chi angles: -178.6 60.2) to mutadedModel #3/FL LEU 10 
    46050 
    46051 > color #3/FL:10 yellow
    46052 
    46053 > swapaa #3/FL:11 ASP
    46054 
    46055 Using Dunbrack library 
    46056 mutadedModel #3/FL VAL 11: phi -71.5, psi -36.5 trans 
    46057 Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/FL ASP 11 
    46058 
    46059 > color #3/FL:11 yellow
    46060 
    46061 > swapaa #3/FL:13 GLU
    46062 
    46063 Using Dunbrack library 
    46064 mutadedModel #3/FL ASP 13: phi -65.6, psi -29.5 trans 
    46065 Applying GLU rotamer (chi angles: -68.4 178.8 -36.2) to mutadedModel #3/FL GLU
    46066 13 
    46067 
    46068 > color #3/FL:13 yellow
    46069 
    46070 > swapaa #3/FL:14 LYS
    46071 
    46072 Using Dunbrack library 
    46073 mutadedModel #3/FL ALA 14: phi -78.0, psi -31.2 trans 
    46074 Applying LYS rotamer (chi angles: -68.4 -171.2 -71.7 -173.9) to mutadedModel
    46075 #3/FL LYS 14 
    46076 
    46077 > color #3/FL:14 yellow
    46078 
    46079 > swapaa #3/FL:16 CYS
    46080 
    46081 Using Dunbrack library 
    46082 mutadedModel #3/FL ALA 16: phi -65.1, psi -45.8 trans 
    46083 Applying CYS rotamer (chi angles: -69.1) to mutadedModel #3/FL CYS 16 
    46084 
    46085 > color #3/FL:16 yellow
    46086 
    46087 > swapaa #3/FL:17 LEU
    46088 
    46089 Using Dunbrack library 
    46090 mutadedModel #3/FL ILE 17: phi -62.0, psi -30.3 trans 
    46091 Applying LEU rotamer (chi angles: -68.4 173.8) to mutadedModel #3/FL LEU 17 
    46092 
    46093 > color #3/FL:17 yellow
    46094 
    46095 > swapaa #3/FL:19 THR
    46096 
    46097 Using Dunbrack library 
    46098 mutadedModel #3/FL GLU 19: phi -100.4, psi -50.1 trans 
    46099 Applying THR rotamer (chi angles: -59.9) to mutadedModel #3/FL THR 19 
    46100 
    46101 > color #3/FL:19 yellow
    46102 
    46103 > swapaa #3/FL:20 ASP
    46104 
    46105 Using Dunbrack library 
    46106 mutadedModel #3/FL GLY 20: phi -83.5, psi -49.2 trans 
    46107 Applying ASP rotamer (chi angles: -69.6 -17.4) to mutadedModel #3/FL ASP 20 
    46108 
    46109 > color #3/FL:20 yellow
    46110 
    46111 > swapaa #3/FL:21 CYS
    46112 
    46113 Using Dunbrack library 
    46114 mutadedModel #3/FL LEU 21: phi -82.6, psi 8.6 trans 
    46115 Applying CYS rotamer (chi angles: -65.6) to mutadedModel #3/FL CYS 21 
    46116 
    46117 > color #3/FL:21 yellow
    46118 
    46119 > swapaa #3/FL:23 LYS
    46120 
    46121 Using Dunbrack library 
    46122 mutadedModel #3/FL GLU 23: phi -74.8, psi -31.8 trans 
    46123 Applying LYS rotamer (chi angles: -81.5 76.8 69.6 -179.3) to mutadedModel
    46124 #3/FL LYS 23 
    46125 
    46126 > color #3/FL:23 yellow
    46127 
    46128 > swapaa #3/FL:24 LYS
    46129 
    46130 Using Dunbrack library 
    46131 mutadedModel #3/FL PHE 24: phi -72.2, psi -23.7 trans 
    46132 Applying LYS rotamer (chi angles: -64.9 -69.4 178.4 64.4) to mutadedModel
    46133 #3/FL LYS 24 
    46134 
    46135 > color #3/FL:24 yellow
    46136 
    46137 > swapaa #3/FL:26 GLU
    46138 
    46139 Using Dunbrack library 
    46140 mutadedModel #3/FL LEU 26: phi -56.0, psi -41.2 trans 
    46141 Applying GLU rotamer (chi angles: -69.4 -64.9 -74.8) to mutadedModel #3/FL GLU
    46142 26 
    46143 
    46144 > color #3/FL:26 yellow
    46145 
    46146 > swapaa #3/FL:31 CYS
    46147 
    46148 Using Dunbrack library 
    46149 mutadedModel #3/FL ALA 31: phi -74.3, psi -37.6 trans 
    46150 Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/FL CYS 31 
    46151 
    46152 > color #3/FL:31 yellow
     2468[deleted to fit within ticket limits]
    461532469
    461542470> swapaa #3/FL:32 LEU