![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 15 months ago
Last modified 15 months ago
#15728 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000036805b000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000036704f000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000366043000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000365037000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000036402b000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000036301f000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000362013000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000361007000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000035754f000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000356543000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000355537000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000035452b000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000035351f000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000352513000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000351507000 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001f4bc8f40 (most recent call first):
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 52 in
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 61 in
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 61 in python_instances_of_class
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 176 in _copy_custom_attrs
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 162 in copy
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/cmd.py", line 65 in combine_cmd
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3213 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py", line 155 in
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/scripting.py", line 72 in _exec_python
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/scripting.py", line 95 in open_python_script
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/runscript.py", line 49 in runscript
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3213 in run
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 319 in execute
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 146 in keyPressEvent
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, openmm._openmm, openmm.app.internal.compiled, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, chimerax.graphics._graphics, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, scipy._lib._ccallback_c, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.special._ellip_harm_2, scipy.interpolate._fitpack, scipy.interpolate.dfitpack, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.spatial.transform._rotation, scipy.optimize._direct, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, psutil._psutil_osx, psutil._psutil_posix, lxml._elementpath, lxml.etree, chimerax.mmcif.mmcif_write, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group (total: 132)
{"app_name":"ChimeraX","timestamp":"2024-08-05 14:54:48.00 +0200","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.6 (23G80)","roots_installed":0,"name":"ChimeraX","incident_id":"892C26EB-B210-4641-B986-EB7A2B15D036"}
{
"uptime" : 99000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,6",
"coalitionID" : 24110,
"osVersion" : {
"train" : "macOS 14.6",
"build" : "23G80",
"releaseType" : "User"
},
"captureTime" : "2024-08-05 14:54:32.4364 +0200",
"codeSigningMonitor" : 1,
"incident" : "892C26EB-B210-4641-B986-EB7A2B15D036",
"pid" : 21511,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-08-05 11:31:01.3737 +0200",
"procStartAbsTime" : 2084095277621,
"procExitAbsTime" : 2377157706534,
"procName" : "ChimeraX",
"procPath" : "\/Users\/USER\/*\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"A6907575-19A7-5D31-A01D-81182354117A","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "55B4CC08-BA3F-AB23-EB21-A242E290EFF8",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRd+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWzg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 15906,
"sleepWakeUUID" : "229A4B2C-A2FE-4DD8-A9F5-19B1EFC8AD21",
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
> set selectionWidth 4
Done loading forcefield
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> isolde set simFidelityMode Medium/Medium
ISOLDE: setting sim fidelity mode to Medium/Medium
nonbonded_cutoff_distance = 0.900000
use_gbsa = True
gbsa_cutoff = 1.100000
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/manualAnnotation.cxs"
Opened cryosparc_P31_J245_map_sharp_Zflipped.mrc as #1.1.1.1, grid size
290,290,290, pixel 1.16, shown at level 0.337, step 1, values float32
opened ChimeraX session
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 16, in
inpAligns = open(sys.argv[2],'r').readlines()
^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory:
'alignmentsMod1Mod.txt'
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> cd /Users/rafaelrocha/supercomplex/supercomplexV-
> IV2-II/cryosparc_P43_J436_002_volume_map_sharp_NOSEQ
Current working directory is:
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/supercomplexV-
IV2-II/cryosparc_P43_J436_002_volume_map_sharp_NOSEQ
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 16, in
inpAligns = open(sys.argv[2],'r').readlines()
^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory:
'alignmentsMod1Mod.txt'
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> cd /Users/rafaelrocha/supercomplex/supercomplexV-
> IV2-II/cryosparc_P43_J436_002_volume_map_sharp_NOSEQ
Current working directory is:
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/supercomplexV-
IV2-II/cryosparc_P43_J436_002_volume_map_sharp_NOSEQ
> cd
> /Users/rafaelrocha/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ
Current working directory is:
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #15/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #15/GC start 17
8 residues renumbered
['1', '1']
> select #15/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #15/Bd start 25
1 residues renumbered
> changechains #15/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #15/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #15/Ca start 26
1 residues renumbered
> changechains #15/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #15/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #15/AP start 27
3 residues renumbered
> changechains #15/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #15/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #15/BN start 30
1 residues renumbered
> changechains #15/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #15/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #15/FF start 31
4 residues renumbered
> changechains #15/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #15/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #15/Fo start 35
0 residues renumbered
> changechains #15/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #15/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #15/Cy start 50
1 residues renumbered
> changechains #15/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #15/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #15/EY start 51
0 residues renumbered
> changechains #15/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #15/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #15/FV start 60
4 residues renumbered
> changechains #15/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #15/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #15/Ey start 64
0 residues renumbered
> changechains #15/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #15/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #15/K start 92
0 residues renumbered
> changechains #15/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #15/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #15/L start 107
0 residues renumbered
> changechains #15/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #15/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #15/Ee start 129
0 residues renumbered
> changechains #15/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #15/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #15/Gc start 2
7 residues renumbered
['1', '8']
> select #15/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #15/Ex start 10
8 residues renumbered
> changechains #15/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #15/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #15/E6 start 18
13 residues renumbered
> changechains #15/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #15/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #15/Ai start 31
1 residues renumbered
> changechains #15/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #15/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #15/0 start 32
0 residues renumbered
> changechains #15/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #15/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #15/U start 63
2 residues renumbered
> changechains #15/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #15/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #15/d start 65
0 residues renumbered
> changechains #15/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #15/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #15/EV start 87
0 residues renumbered
> changechains #15/EV Gc
Chain IDs of 21 residues changed
> delete #15/Ew:132
> renumber #15/Ew:133-9999999 start 132
118 residues renumbered
['3', '139']
> select #15/Ew
1064 atoms, 1076 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #15/Ew start 108
0 residues renumbered
> changechains #15/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #15/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #15/GO start 250
3 residues renumbered
> changechains #15/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #15/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #15/Z start 253
8 residues renumbered
> changechains #15/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #15/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #15/ES start 262
0 residues renumbered
> changechains #15/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #15/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #15/Fc start 282
0 residues renumbered
> changechains #15/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #15/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #15/Fa start 289
0 residues renumbered
> changechains #15/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #15/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #15/2 start 314
10 residues renumbered
> changechains #15/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #15/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #15/E start 326
2 residues renumbered
> changechains #15/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #15/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #15/Ff start 328
0 residues renumbered
> changechains #15/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #15/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #15/E2 start 338
0 residues renumbered
> changechains #15/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #15/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #15/W start 470
0 residues renumbered
> changechains #15/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #15/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #15/BM start 490
1 residues renumbered
> changechains #15/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #15/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #15/A start 5
5 residues renumbered
['5', '33']
> select #15/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #15/Fd start 10
0 residues renumbered
> changechains #15/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #15/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #15/Ef start 46
4 residues renumbered
> changechains #15/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #15/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #15/Eg start 50
0 residues renumbered
> changechains #15/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #15/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #15/j start 124
0 residues renumbered
> changechains #15/j A
Chain IDs of 22 residues changed
> renumber #15/Ei:7-9999999 start 8
25 residues renumbered
> ~bond #15/Ei:6@C #15/Ei:8@N
['2', '21']
> select #15/Ei
187 atoms, 196 bonds, 25 residues, 1 model selected
145
145
>0
> delete #15/Ei:1
> renumber #15/Ei start 146
25 residues renumbered
> changechains #15/Ei A
Chain IDs of 25 residues changed
['1', '4']
> select #15/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #15/Bi:3
> delete #15/Bi:2
> delete #15/Bi:1
> renumber #15/Bi start 171
1 residues renumbered
> changechains #15/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #15/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #15/GM:1
> renumber #15/GM start 172
2 residues renumbered
> changechains #15/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #15/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #15/E8 start 174
0 residues renumbered
> changechains #15/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #15/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #15/N start 34
0 residues renumbered
['1', '5']
> select #15/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #15/GZ start 42
5 residues renumbered
> changechains #15/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #15/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #15/FT start 47
0 residues renumbered
> changechains #15/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #15/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #15/4 start 25
5 residues renumbered
['1', '3']
> select #15/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #15/D start 30
3 residues renumbered
> changechains #15/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #15/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #15/CN start 33
1 residues renumbered
> changechains #15/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #15/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #15/FG start 34
7 residues renumbered
> changechains #15/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #15/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #15/GH start 57
0 residues renumbered
> changechains #15/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #15/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #15/GW start 71
5 residues renumbered
> changechains #15/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #15/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #15/Fj start 76
4 residues renumbered
> changechains #15/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #15/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #15/E4 start 80
7 residues renumbered
> changechains #15/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #15/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #15/Er start 87
0 residues renumbered
> changechains #15/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #15/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #15/ER start 101
25 residues renumbered
> changechains #15/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #15/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #15/Fz:2
> delete #15/Fz:1
> renumber #15/Fz start 126
20 residues renumbered
> changechains #15/Fz 4
Chain IDs of 20 residues changed
['1', '8']
> select #15/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #15/p start 144
8 residues renumbered
> changechains #15/p 4
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 190, in
run(session, f'changechains {outModel}/{hC} {firstChain}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains
raise UserError("Proposed chainID change conflicts with existing residue %s" %
r)
chimerax.core.errors.UserError: Proposed chainID change conflicts with
existing residue renamedAndRenumberedModel #15/4 LEU 144
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> close session
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
Summary of feedback from opening
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A3 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF | No description available
AH Ck Du | No description available
AK DC | No description available
AL | No description available
AN | No description available
AP | No description available
AQ BE CD DN Df Dl Dn Gj | No description available
AU | No description available
AY | No description available
AZ | No description available
Ab | No description available
Ad | No description available
Ae S | No description available
Af | No description available
Ah | No description available
Aj | No description available
Al | No description available
Am | No description available
Aq C5 Ct Cv DV | No description available
As E | No description available
Av | No description available
Aw | No description available
Ay B3 | No description available
Az | No description available
B | No description available
B1 | No description available
BB | No description available
BD | No description available
BK | No description available
BL | No description available
BO | No description available
BS | No description available
BU | No description available
BW | No description available
Bi | No description available
Bk | No description available
Br U | No description available
Bu | No description available
Bx | No description available
Bz | No description available
C | No description available
C2 | No description available
CC | No description available
CE | No description available
CG | No description available
CT | No description available
CW | No description available
CY | No description available
Cd | No description available
Ch | No description available
Cl | No description available
D | No description available
D9 | No description available
DB | No description available
DF | No description available
DS | No description available
DY | No description available
E0 | No description available
E1 | No description available
E2 | No description available
E3 | No description available
E4 | No description available
E5 | No description available
E6 | No description available
E7 | No description available
E8 | No description available
E9 | No description available
EJ | No description available
EK | No description available
EL | No description available
EM | No description available
EN | No description available
EO | No description available
EP | No description available
EQ | No description available
ER | No description available
ES | No description available
ET | No description available
EU | No description available
EV | No description available
EW | No description available
EX | No description available
EY | No description available
EZ | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Eg | No description available
Eh | No description available
Ei | No description available
Ej | No description available
Ek | No description available
El | No description available
Em | No description available
En | No description available
Eo | No description available
Ep | No description available
Eq | No description available
Er | No description available
Es | No description available
Et | No description available
Eu | No description available
Ev | No description available
Ew | No description available
Ex | No description available
Ey | No description available
Ez | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 | No description available
F4 | No description available
F5 | No description available
F6 | No description available
F7 | No description available
F8 | No description available
F9 | No description available
FA | No description available
FB | No description available
FC | No description available
FD | No description available
FE | No description available
FF | No description available
FG | No description available
FH | No description available
FI | No description available
FJ | No description available
FK | No description available
FL | No description available
FM | No description available
FN | No description available
FO | No description available
FP | No description available
FQ | No description available
FR | No description available
FS | No description available
FT | No description available
FU | No description available
FV | No description available
FW | No description available
FX | No description available
FY | No description available
FZ | No description available
Fa | No description available
Fb | No description available
Fc | No description available
Fd | No description available
Fe | No description available
Ff | No description available
Fg | No description available
Fh | No description available
Fi | No description available
Fj | No description available
Fk | No description available
Fl | No description available
Fm | No description available
Fn | No description available
Fo | No description available
Fp | No description available
Fq | No description available
Fr | No description available
Fs | No description available
Ft | No description available
Fu | No description available
Fv | No description available
Fw | No description available
Fx | No description available
Fy | No description available
Fz | No description available
G | No description available
GA | No description available
GB | No description available
GC | No description available
GD | No description available
GE | No description available
GF | No description available
GG | No description available
GH | No description available
GI | No description available
GJ | No description available
GK | No description available
GL | No description available
GM | No description available
GN | No description available
GO | No description available
GP | No description available
GQ | No description available
GR | No description available
GS | No description available
GT | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
T | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> select #1/p
62 atoms, 62 bonds, 8 residues, 1 model selected
> select #1/4, D, CN, FG, GH, GW, Fj, E4, Er, ER, Fz, p, Dk, Bz, Br, F6, q,
> Aw, X, Y, 9, c, Ge, Du, Ad, t, FU, By, AH, GV, Dq, GT, DS, Fp, 7, 8, FJ, Fu,
> FN, D6, Dl, Dk, Dt, C2, GR, FK, Gb
3488 atoms, 3515 bonds, 459 residues, 1 model selected
> color #1 gray
> color #1/4, D, CN, FG, GH, GW, Fj, E4, Er, ER, Fz, p, Dk, Bz, Br, F6, q, Aw,
> X, Y, 9, c, Ge, Du, Ad, t, FU, By, AH, GV, Dq, GT, DS, Fp, 7, 8, FJ, Fu, FN,
> D6, Dl, Dk, Dt, C2, GR, FK, Gb magenta
> select clear
> select #1/p
62 atoms, 62 bonds, 8 residues, 1 model selected
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #2/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #2/GC start 17
8 residues renumbered
['1', '1']
> select #2/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #2/Bd start 25
1 residues renumbered
> changechains #2/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #2/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #2/Ca start 26
1 residues renumbered
> changechains #2/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #2/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #2/AP start 27
3 residues renumbered
> changechains #2/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #2/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #2/BN start 30
1 residues renumbered
> changechains #2/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #2/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/FF start 31
4 residues renumbered
> changechains #2/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #2/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #2/Fo start 35
15 residues renumbered
> changechains #2/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #2/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #2/Cy start 50
1 residues renumbered
> changechains #2/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #2/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #2/EY start 51
9 residues renumbered
> changechains #2/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #2/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #2/FV start 60
4 residues renumbered
> changechains #2/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #2/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #2/Ey start 64
28 residues renumbered
> changechains #2/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #2/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #2/K start 92
15 residues renumbered
> changechains #2/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #2/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #2/L start 107
22 residues renumbered
> changechains #2/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #2/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #2/Ee start 129
44 residues renumbered
> changechains #2/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #2/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #2/Gc start 2
7 residues renumbered
['1', '8']
> select #2/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #2/Ex start 10
8 residues renumbered
> changechains #2/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #2/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #2/E6 start 18
13 residues renumbered
> changechains #2/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #2/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #2/Ai start 31
1 residues renumbered
> changechains #2/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #2/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #2/0 start 32
31 residues renumbered
> changechains #2/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #2/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #2/U start 63
2 residues renumbered
> changechains #2/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #2/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #2/d start 65
22 residues renumbered
> changechains #2/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #2/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #2/EV start 87
21 residues renumbered
> changechains #2/EV Gc
Chain IDs of 21 residues changed
> delete #2/Ew:132
> renumber #2/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #2/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #2/Ew start 108
142 residues renumbered
> changechains #2/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #2/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #2/GO start 250
3 residues renumbered
> changechains #2/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #2/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #2/Z start 253
8 residues renumbered
> changechains #2/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #2/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #2/ES start 262
18 residues renumbered
> changechains #2/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #2/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #2/Fc start 282
7 residues renumbered
> changechains #2/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #2/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #2/Fa start 289
24 residues renumbered
> changechains #2/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #2/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #2/2 start 314
10 residues renumbered
> changechains #2/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #2/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #2/E start 326
2 residues renumbered
> changechains #2/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #2/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #2/Ff start 328
10 residues renumbered
> changechains #2/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #2/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #2/E2 start 338
132 residues renumbered
> changechains #2/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #2/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #2/W start 470
20 residues renumbered
> changechains #2/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #2/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #2/BM start 490
1 residues renumbered
> changechains #2/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #2/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #2/A start 5
5 residues renumbered
['5', '33']
> select #2/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #2/Fd start 10
36 residues renumbered
> changechains #2/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #2/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #2/Ef start 46
4 residues renumbered
> changechains #2/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #2/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #2/Eg start 50
74 residues renumbered
> changechains #2/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #2/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #2/j start 124
22 residues renumbered
> changechains #2/j A
Chain IDs of 22 residues changed
> renumber #2/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #2/Ei:6@C #2/Ei:8@N
['2', '21']
> select #2/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #2/Ei:1
> renumber #2/Ei start 146
24 residues renumbered
> changechains #2/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #2/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #2/Bi:3
> delete #2/Bi:2
> delete #2/Bi:1
> renumber #2/Bi start 171
1 residues renumbered
> changechains #2/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #2/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #2/GM:1
> renumber #2/GM start 172
2 residues renumbered
> changechains #2/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #2/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #2/E8 start 174
86 residues renumbered
> changechains #2/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #2/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #2/N start 34
8 residues renumbered
['1', '5']
> select #2/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #2/GZ start 42
5 residues renumbered
> changechains #2/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #2/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #2/FT start 47
101 residues renumbered
> changechains #2/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #2/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #2/4 start 25
5 residues renumbered
['1', '3']
> select #2/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #2/D start 30
3 residues renumbered
> changechains #2/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #2/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #2/CN start 33
1 residues renumbered
> changechains #2/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #2/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #2/FG start 34
7 residues renumbered
> changechains #2/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #2/GH start 57
14 residues renumbered
> changechains #2/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #2/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #2/GW start 71
5 residues renumbered
> changechains #2/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #2/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #2/Fj start 76
4 residues renumbered
> changechains #2/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #2/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #2/E4 start 80
7 residues renumbered
> changechains #2/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #2/Er start 87
14 residues renumbered
> changechains #2/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #2/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #2/ER start 101
25 residues renumbered
> changechains #2/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #2/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #2/Fz:2
> delete #2/Fz:1
> renumber #2/Fz start 126
18 residues renumbered
> changechains #2/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #2/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #2/p start 144
8 residues renumbered
> changechains #2/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #2/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #2/Dk start 152
1 residues renumbered
> changechains #2/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #2/Bz start 153
2 residues renumbered
> changechains #2/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #2/Br start 155
2 residues renumbered
> changechains #2/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #2/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #2/F6 start 181
18 residues renumbered
> changechains #2/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #2/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #2/q start 200
70 residues renumbered
> changechains #2/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #2/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #2/Aw start 270
2 residues renumbered
> changechains #2/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #2/X start 272
2 residues renumbered
> changechains #2/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #2/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #2/Y start 274
12 residues renumbered
> changechains #2/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #2/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #2/9 start 286
5 residues renumbered
> changechains #2/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #2/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #2/c:1
> renumber #2/c start 291
13 residues renumbered
> changechains #2/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #2/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #2/Ge start 304
3 residues renumbered
> changechains #2/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #2/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #2/Du start 309
2 residues renumbered
> changechains #2/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #2/Ad start 311
3 residues renumbered
> changechains #2/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #2/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #2/t start 314
7 residues renumbered
> changechains #2/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #2/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #2/FU start 321
32 residues renumbered
> changechains #2/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #2/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #2/By start 353
1 residues renumbered
> changechains #2/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #2/AH start 354
2 residues renumbered
> changechains #2/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #2/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #2/GV start 356
24 residues renumbered
> changechains #2/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #2/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #2/Dq start 380
1 residues renumbered
> changechains #2/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #2/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #2/GT start 381
4 residues renumbered
> changechains #2/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #2/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #2/DS start 387
2 residues renumbered
> changechains #2/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #2/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #2/Fp start 389
10 residues renumbered
> changechains #2/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #2/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #2/7 start 399
5 residues renumbered
> changechains #2/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #2/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #2/8 start 404
2 residues renumbered
> changechains #2/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #2/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #2/FJ start 407
20 residues renumbered
> changechains #2/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #2/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #2/Fu:1
> renumber #2/Fu start 427
6 residues renumbered
> changechains #2/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #2/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #2/D6 start 469
1 residues renumbered
> changechains #2/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #2/Dl start 470
2 residues renumbered
> changechains #2/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #2/Dk
Nothing selected
471
472
>1
> renumber #2/Dk start 472
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> select #1/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel cartoons
> hide sel atoms
> close #2
> select #1/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/4
50 atoms, 51 bonds, 5 residues, 1 model selected
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #2/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #2/GC start 17
8 residues renumbered
['1', '1']
> select #2/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #2/Bd start 25
1 residues renumbered
> changechains #2/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #2/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #2/Ca start 26
1 residues renumbered
> changechains #2/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #2/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #2/AP start 27
3 residues renumbered
> changechains #2/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #2/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #2/BN start 30
1 residues renumbered
> changechains #2/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #2/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/FF start 31
4 residues renumbered
> changechains #2/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #2/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #2/Fo start 35
15 residues renumbered
> changechains #2/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #2/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #2/Cy start 50
1 residues renumbered
> changechains #2/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #2/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #2/EY start 51
9 residues renumbered
> changechains #2/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #2/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #2/FV start 60
4 residues renumbered
> changechains #2/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #2/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #2/Ey start 64
28 residues renumbered
> changechains #2/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #2/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #2/K start 92
15 residues renumbered
> changechains #2/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #2/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #2/L start 107
22 residues renumbered
> changechains #2/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #2/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #2/Ee start 129
44 residues renumbered
> changechains #2/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #2/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #2/Gc start 2
7 residues renumbered
['1', '8']
> select #2/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #2/Ex start 10
8 residues renumbered
> changechains #2/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #2/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #2/E6 start 18
13 residues renumbered
> changechains #2/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #2/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #2/Ai start 31
1 residues renumbered
> changechains #2/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #2/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #2/0 start 32
31 residues renumbered
> changechains #2/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #2/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #2/U start 63
2 residues renumbered
> changechains #2/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #2/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #2/d start 65
22 residues renumbered
> changechains #2/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #2/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #2/EV start 87
21 residues renumbered
> changechains #2/EV Gc
Chain IDs of 21 residues changed
> delete #2/Ew:132
> renumber #2/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #2/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #2/Ew start 108
142 residues renumbered
> changechains #2/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #2/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #2/GO start 250
3 residues renumbered
> changechains #2/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #2/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #2/Z start 253
8 residues renumbered
> changechains #2/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #2/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #2/ES start 262
18 residues renumbered
> changechains #2/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #2/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #2/Fc start 282
7 residues renumbered
> changechains #2/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #2/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #2/Fa start 289
24 residues renumbered
> changechains #2/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #2/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #2/2 start 314
10 residues renumbered
> changechains #2/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #2/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #2/E start 326
2 residues renumbered
> changechains #2/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #2/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #2/Ff start 328
10 residues renumbered
> changechains #2/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #2/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #2/E2 start 338
132 residues renumbered
> changechains #2/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #2/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #2/W start 470
20 residues renumbered
> changechains #2/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #2/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #2/BM start 490
1 residues renumbered
> changechains #2/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #2/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #2/A start 5
5 residues renumbered
['5', '33']
> select #2/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #2/Fd start 10
36 residues renumbered
> changechains #2/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #2/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #2/Ef start 46
4 residues renumbered
> changechains #2/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #2/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #2/Eg start 50
74 residues renumbered
> changechains #2/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #2/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #2/j start 124
22 residues renumbered
> changechains #2/j A
Chain IDs of 22 residues changed
> renumber #2/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #2/Ei:6@C #2/Ei:8@N
['2', '21']
> select #2/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #2/Ei:1
> renumber #2/Ei start 146
24 residues renumbered
> changechains #2/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #2/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #2/Bi:3
> delete #2/Bi:2
> delete #2/Bi:1
> renumber #2/Bi start 171
1 residues renumbered
> changechains #2/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #2/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #2/GM:1
> renumber #2/GM start 172
2 residues renumbered
> changechains #2/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #2/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #2/E8 start 174
86 residues renumbered
> changechains #2/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #2/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #2/N start 34
8 residues renumbered
['1', '5']
> select #2/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #2/GZ start 42
5 residues renumbered
> changechains #2/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #2/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #2/FT start 47
101 residues renumbered
> changechains #2/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #2/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #2/4 start 25
5 residues renumbered
['1', '3']
> select #2/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #2/D start 30
3 residues renumbered
> changechains #2/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #2/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #2/CN start 33
1 residues renumbered
> changechains #2/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #2/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #2/FG start 34
7 residues renumbered
> changechains #2/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #2/GH start 57
14 residues renumbered
> changechains #2/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #2/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #2/GW start 71
5 residues renumbered
> changechains #2/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #2/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #2/Fj start 76
4 residues renumbered
> changechains #2/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #2/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #2/E4 start 80
7 residues renumbered
> changechains #2/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #2/Er start 87
14 residues renumbered
> changechains #2/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #2/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #2/ER start 101
25 residues renumbered
> changechains #2/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #2/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #2/Fz:2
> delete #2/Fz:1
> renumber #2/Fz start 126
18 residues renumbered
> changechains #2/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #2/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #2/p start 144
8 residues renumbered
> changechains #2/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #2/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #2/Dk start 152
1 residues renumbered
> changechains #2/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #2/Bz start 153
2 residues renumbered
> changechains #2/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #2/Br start 155
2 residues renumbered
> changechains #2/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #2/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #2/F6 start 181
18 residues renumbered
> changechains #2/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #2/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #2/q start 200
70 residues renumbered
> changechains #2/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #2/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #2/Aw start 270
2 residues renumbered
> changechains #2/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #2/X start 272
2 residues renumbered
> changechains #2/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #2/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #2/Y start 274
12 residues renumbered
> changechains #2/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #2/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #2/9 start 286
5 residues renumbered
> changechains #2/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #2/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #2/c:1
> renumber #2/c start 291
13 residues renumbered
> changechains #2/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #2/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #2/Ge start 304
3 residues renumbered
> changechains #2/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #2/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #2/Du start 309
2 residues renumbered
> changechains #2/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #2/Ad start 311
3 residues renumbered
> changechains #2/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #2/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #2/t start 314
7 residues renumbered
> changechains #2/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #2/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #2/FU start 321
32 residues renumbered
> changechains #2/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #2/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #2/By start 353
1 residues renumbered
> changechains #2/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #2/AH start 354
2 residues renumbered
> changechains #2/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #2/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #2/GV start 356
24 residues renumbered
> changechains #2/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #2/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #2/Dq start 380
1 residues renumbered
> changechains #2/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #2/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #2/GT start 381
4 residues renumbered
> changechains #2/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #2/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #2/DS start 387
2 residues renumbered
> changechains #2/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #2/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #2/Fp start 389
10 residues renumbered
> changechains #2/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #2/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #2/7 start 399
5 residues renumbered
> changechains #2/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #2/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #2/8 start 404
2 residues renumbered
> changechains #2/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #2/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #2/FJ start 407
20 residues renumbered
> changechains #2/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #2/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #2/Fu:1
> renumber #2/Fu start 427
6 residues renumbered
> changechains #2/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #2/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #2/D6 start 469
1 residues renumbered
> changechains #2/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #2/Dl start 470
2 residues renumbered
> changechains #2/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #2/Dk
Nothing selected
471
472
>1
> renumber #2/Dk start 472
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> select #2/4
2801 atoms, 2823 bonds, 365 residues, 1 model selected
> select #2/4:490
Nothing selected
> select #2/4
2801 atoms, 2823 bonds, 365 residues, 1 model selected
> select #2/4:490
Nothing selected
> select #2/4:470
4 atoms, 3 bonds, 1 residue, 1 model selected
> close session
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/manualAnnotation.cxs"
Opened cryosparc_P31_J245_map_sharp_Zflipped.mrc as #1.1.1.1, grid size
290,290,290, pixel 1.16, shown at level 0.337, step 1, values float32
opened ChimeraX session
> color #1 gray
> color
> #1/L,W,FJ,y,FR,Ee,6,F1,Ei,Eq,Ek,Q,Eg,E8,d,Fa,Es,GJ,EZ,F7,EV,FH,0,Ew,Ec,Fq,GV,EJ,FT,c,x,F6,FZ,FN,Fg,Em,Ea,1,Ep,E5,k,EO,FQ,o,FI,Er,m,Ej,v,Fx,ES,FM,FA,j,FY,q,Eb,s,Fh,Ev,Fd,Ez,El,Et,u,E2,n,FC,EQ,FW
> magenta
> color
> #1/GC,Bd,Ca,AP,BN,FF,Fo,Cy,EY,FV,Ey,K,Gc,Ex,E6,Ai,U,GO,Z,Fc,2,E,Ff,BM,A,Ef,Bi,GM,4,D,CN,FG,GH,GW,Fj,E4,Er,ER,Fz,p,Dk,Bz,Br,F6,q,Aw,X,Y,9,c,Ge,Du,Ad,t,FU,By,AH,Dq,GT,DS,Fp,7,8,FJ,Fu,D6,Dl,Dk,Dt,C2,GR,FK,Gb,BA,B9,Ej,AC,k,Fn,o,AE,C8,Bo,Ep,GU,FE,Az,J,AK,Cj,h,i,Cw,As,r,l,BD,GA,a,En,Eo,GQ,B2,AB,FM,BG,A8,B0,C1,GN,FL,FP
> green
> ui tool show "Volume Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #1.1.1.1 color #00fdff
> transparency 50
> select #1/4
50 atoms, 51 bonds, 5 residues, 1 model selected
> show #14 models
> hide #14 models
> show #14 models
> hide #14 models
> show #14 models
> hide #14 models
> show #6 models
> hide #6 models
> show #5 models
> hide #5 models
> show #4 models
> show #3 models
> hide #4 models
> hide #3 models
> show #6 models
> hide #6 models
> show #7 models
> hide #7 models
> show #7 models
> select #7
4057 atoms, 4149 bonds, 527 residues, 1 model selected
> select #7/468
Nothing selected
> view #7/468
No objects specified.
> view #7:468
> show #14 models
> close #14
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #14/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #14/GC start 17
8 residues renumbered
['1', '1']
> select #14/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #14/Bd start 25
1 residues renumbered
> changechains #14/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #14/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #14/Ca start 26
1 residues renumbered
> changechains #14/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #14/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #14/AP start 27
3 residues renumbered
> changechains #14/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #14/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #14/BN start 30
1 residues renumbered
> changechains #14/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #14/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #14/FF start 31
4 residues renumbered
> changechains #14/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #14/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #14/Fo start 35
0 residues renumbered
> changechains #14/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #14/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #14/Cy start 50
1 residues renumbered
> changechains #14/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #14/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #14/EY start 51
0 residues renumbered
> changechains #14/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #14/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #14/FV start 60
4 residues renumbered
> changechains #14/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #14/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #14/Ey start 64
0 residues renumbered
> changechains #14/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #14/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #14/K start 92
0 residues renumbered
> changechains #14/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #14/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #14/L start 107
0 residues renumbered
> changechains #14/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #14/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #14/Ee start 129
0 residues renumbered
> changechains #14/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #14/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #14/Gc start 2
7 residues renumbered
['1', '8']
> select #14/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #14/Ex start 10
8 residues renumbered
> changechains #14/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #14/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #14/E6 start 18
13 residues renumbered
> changechains #14/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #14/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #14/Ai start 31
1 residues renumbered
> changechains #14/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #14/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #14/0 start 32
0 residues renumbered
> changechains #14/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #14/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #14/U start 63
2 residues renumbered
> changechains #14/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #14/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #14/d start 65
0 residues renumbered
> changechains #14/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #14/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #14/EV start 87
0 residues renumbered
> changechains #14/EV Gc
Chain IDs of 21 residues changed
> delete #14/Ew:132
> renumber #14/Ew:133-9999999 start 132
118 residues renumbered
['3', '139']
> select #14/Ew
1064 atoms, 1076 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #14/Ew start 108
0 residues renumbered
> changechains #14/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #14/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #14/GO start 250
3 residues renumbered
> changechains #14/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #14/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #14/Z start 253
8 residues renumbered
> changechains #14/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #14/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #14/ES start 262
0 residues renumbered
> changechains #14/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #14/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #14/Fc start 282
0 residues renumbered
> changechains #14/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #14/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #14/Fa start 289
0 residues renumbered
> changechains #14/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #14/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #14/2 start 314
10 residues renumbered
> changechains #14/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #14/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #14/E start 326
2 residues renumbered
> changechains #14/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #14/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #14/Ff start 328
0 residues renumbered
> changechains #14/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #14/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #14/E2 start 338
0 residues renumbered
> changechains #14/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #14/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #14/W start 470
0 residues renumbered
> changechains #14/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #14/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #14/BM start 490
1 residues renumbered
> changechains #14/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #14/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #14/A start 5
5 residues renumbered
['5', '33']
> select #14/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #14/Fd start 10
0 residues renumbered
> changechains #14/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #14/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #14/Ef start 46
4 residues renumbered
> changechains #14/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #14/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #14/Eg start 50
0 residues renumbered
> changechains #14/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #14/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #14/j start 124
0 residues renumbered
> changechains #14/j A
Chain IDs of 22 residues changed
> renumber #14/Ei:7-9999999 start 8
25 residues renumbered
> ~bond #14/Ei:6@C #14/Ei:8@N
['2', '21']
> select #14/Ei
187 atoms, 196 bonds, 25 residues, 1 model selected
145
145
>0
> delete #14/Ei:1
> renumber #14/Ei start 146
25 residues renumbered
> changechains #14/Ei A
Chain IDs of 25 residues changed
['1', '4']
> select #14/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #14/Bi:3
> delete #14/Bi:2
> delete #14/Bi:1
> renumber #14/Bi start 171
1 residues renumbered
> changechains #14/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #14/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #14/GM:1
> renumber #14/GM start 172
2 residues renumbered
> changechains #14/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #14/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #14/E8 start 174
0 residues renumbered
> changechains #14/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #14/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #14/N start 34
0 residues renumbered
['1', '5']
> select #14/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #14/GZ start 42
5 residues renumbered
> changechains #14/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #14/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #14/FT start 47
0 residues renumbered
> changechains #14/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #14/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #14/4 start 25
5 residues renumbered
['1', '3']
> select #14/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #14/D start 30
3 residues renumbered
> changechains #14/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #14/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #14/CN start 33
1 residues renumbered
> changechains #14/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #14/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #14/FG start 34
7 residues renumbered
> changechains #14/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #14/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #14/GH start 57
0 residues renumbered
> changechains #14/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #14/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #14/GW start 71
5 residues renumbered
> changechains #14/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #14/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #14/Fj start 76
4 residues renumbered
> changechains #14/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #14/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #14/E4 start 80
7 residues renumbered
> changechains #14/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #14/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #14/Er start 87
0 residues renumbered
> changechains #14/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #14/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #14/ER start 101
25 residues renumbered
> changechains #14/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #14/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #14/Fz:2
> delete #14/Fz:1
> renumber #14/Fz start 126
20 residues renumbered
> changechains #14/Fz 4
Chain IDs of 20 residues changed
['1', '8']
> select #14/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #14/p start 144
8 residues renumbered
> changechains #14/p 4
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 190, in
run(session, f'changechains {outModel}/{hC} {firstChain}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains
raise UserError("Proposed chainID change conflicts with existing residue %s" %
r)
chimerax.core.errors.UserError: Proposed chainID change conflicts with
existing residue renamedAndRenumberedModel #14/4 LEU 144
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> hide #1.3 models
> hide #1.2 models
> hide #!1.1 models
> hide #!1 models
> show #1.2 models
> hide #!14 models
> hide #1.2 models
> show #!14 models
> delete #14/FN:469
> renumber #14/FN:470-503 start 479
34 residues renumbered
> rename #14 teste
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #14 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #14 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #15/GC
1183 atoms, 1196 bonds, 156 residues, 1 model selected
0
17
>17
> renumber #15/GC start 17
0 residues renumbered
['1', '1']
> select #15/Bd
Nothing selected
172
25
>-147
> delete #15/Bd:148
> delete #15/Bd:147
> delete #15/Bd:146
> delete #15/Bd:145
> delete #15/Bd:144
> delete #15/Bd:143
> delete #15/Bd:142
> delete #15/Bd:141
> delete #15/Bd:140
> delete #15/Bd:139
> delete #15/Bd:138
> delete #15/Bd:137
> delete #15/Bd:136
> delete #15/Bd:135
> delete #15/Bd:134
> delete #15/Bd:133
> delete #15/Bd:132
> delete #15/Bd:131
> delete #15/Bd:130
> delete #15/Bd:129
> delete #15/Bd:128
> delete #15/Bd:127
> delete #15/Bd:126
> delete #15/Bd:125
> delete #15/Bd:124
> delete #15/Bd:123
> delete #15/Bd:122
> delete #15/Bd:121
> delete #15/Bd:120
> delete #15/Bd:119
> delete #15/Bd:118
> delete #15/Bd:117
> delete #15/Bd:116
> delete #15/Bd:115
> delete #15/Bd:114
> delete #15/Bd:113
> delete #15/Bd:112
> delete #15/Bd:111
> delete #15/Bd:110
> delete #15/Bd:109
> delete #15/Bd:108
> delete #15/Bd:107
> delete #15/Bd:106
> delete #15/Bd:105
> delete #15/Bd:104
> delete #15/Bd:103
> delete #15/Bd:102
> delete #15/Bd:101
> delete #15/Bd:100
> delete #15/Bd:99
> delete #15/Bd:98
> delete #15/Bd:97
> delete #15/Bd:96
> delete #15/Bd:95
> delete #15/Bd:94
> delete #15/Bd:93
> delete #15/Bd:92
> delete #15/Bd:91
> delete #15/Bd:90
> delete #15/Bd:89
> delete #15/Bd:88
> delete #15/Bd:87
> delete #15/Bd:86
> delete #15/Bd:85
> delete #15/Bd:84
> delete #15/Bd:83
> delete #15/Bd:82
> delete #15/Bd:81
> delete #15/Bd:80
> delete #15/Bd:79
> delete #15/Bd:78
> delete #15/Bd:77
> delete #15/Bd:76
> delete #15/Bd:75
> delete #15/Bd:74
> delete #15/Bd:73
> delete #15/Bd:72
> delete #15/Bd:71
> delete #15/Bd:70
> delete #15/Bd:69
> delete #15/Bd:68
> delete #15/Bd:67
> delete #15/Bd:66
> delete #15/Bd:65
> delete #15/Bd:64
> delete #15/Bd:63
> delete #15/Bd:62
> delete #15/Bd:61
> delete #15/Bd:60
> delete #15/Bd:59
> delete #15/Bd:58
> delete #15/Bd:57
> delete #15/Bd:56
> delete #15/Bd:55
> delete #15/Bd:54
> delete #15/Bd:53
> delete #15/Bd:52
> delete #15/Bd:51
> delete #15/Bd:50
> delete #15/Bd:49
> delete #15/Bd:48
> delete #15/Bd:47
> delete #15/Bd:46
> delete #15/Bd:45
> delete #15/Bd:44
> delete #15/Bd:43
> delete #15/Bd:42
> delete #15/Bd:41
> delete #15/Bd:40
> delete #15/Bd:39
> delete #15/Bd:38
> delete #15/Bd:37
> delete #15/Bd:36
> delete #15/Bd:35
> delete #15/Bd:34
> delete #15/Bd:33
> delete #15/Bd:32
> delete #15/Bd:31
> delete #15/Bd:30
> delete #15/Bd:29
> delete #15/Bd:28
> delete #15/Bd:27
> delete #15/Bd:26
> delete #15/Bd:25
> delete #15/Bd:24
> delete #15/Bd:23
> delete #15/Bd:22
> delete #15/Bd:21
> delete #15/Bd:20
> delete #15/Bd:19
> delete #15/Bd:18
> delete #15/Bd:17
> delete #15/Bd:16
> delete #15/Bd:15
> delete #15/Bd:14
> delete #15/Bd:13
> delete #15/Bd:12
> delete #15/Bd:11
> delete #15/Bd:10
> delete #15/Bd:9
> delete #15/Bd:8
> delete #15/Bd:7
> delete #15/Bd:6
> delete #15/Bd:5
> delete #15/Bd:4
> delete #15/Bd:3
> delete #15/Bd:2
> delete #15/Bd:1
> renumber #15/Bd start 173
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> close session
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
Summary of feedback from opening
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A3 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF | No description available
AH Ck Du | No description available
AK DC | No description available
AL | No description available
AN | No description available
AP | No description available
AQ BE CD DN Df Dl Dn Gj | No description available
AU | No description available
AY | No description available
AZ | No description available
Ab | No description available
Ad | No description available
Ae S | No description available
Af | No description available
Ah | No description available
Aj | No description available
Al | No description available
Am | No description available
Aq C5 Ct Cv DV | No description available
As E | No description available
Av | No description available
Aw | No description available
Ay B3 | No description available
Az | No description available
B | No description available
B1 | No description available
BB | No description available
BD | No description available
BK | No description available
BL | No description available
BO | No description available
BS | No description available
BU | No description available
BW | No description available
Bi | No description available
Bk | No description available
Br U | No description available
Bu | No description available
Bx | No description available
Bz | No description available
C | No description available
C2 | No description available
CC | No description available
CE | No description available
CG | No description available
CT | No description available
CW | No description available
CY | No description available
Cd | No description available
Ch | No description available
Cl | No description available
D | No description available
D9 | No description available
DB | No description available
DF | No description available
DS | No description available
DY | No description available
E0 | No description available
E1 | No description available
E2 | No description available
E3 | No description available
E4 | No description available
E5 | No description available
E6 | No description available
E7 | No description available
E8 | No description available
E9 | No description available
EJ | No description available
EK | No description available
EL | No description available
EM | No description available
EN | No description available
EO | No description available
EP | No description available
EQ | No description available
ER | No description available
ES | No description available
ET | No description available
EU | No description available
EV | No description available
EW | No description available
EX | No description available
EY | No description available
EZ | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Eg | No description available
Eh | No description available
Ei | No description available
Ej | No description available
Ek | No description available
El | No description available
Em | No description available
En | No description available
Eo | No description available
Ep | No description available
Eq | No description available
Er | No description available
Es | No description available
Et | No description available
Eu | No description available
Ev | No description available
Ew | No description available
Ex | No description available
Ey | No description available
Ez | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 | No description available
F4 | No description available
F5 | No description available
F6 | No description available
F7 | No description available
F8 | No description available
F9 | No description available
FA | No description available
FB | No description available
FC | No description available
FD | No description available
FE | No description available
FF | No description available
FG | No description available
FH | No description available
FI | No description available
FJ | No description available
FK | No description available
FL | No description available
FM | No description available
FN | No description available
FO | No description available
FP | No description available
FQ | No description available
FR | No description available
FS | No description available
FT | No description available
FU | No description available
FV | No description available
FW | No description available
FX | No description available
FY | No description available
FZ | No description available
Fa | No description available
Fb | No description available
Fc | No description available
Fd | No description available
Fe | No description available
Ff | No description available
Fg | No description available
Fh | No description available
Fi | No description available
Fj | No description available
Fk | No description available
Fl | No description available
Fm | No description available
Fn | No description available
Fo | No description available
Fp | No description available
Fq | No description available
Fr | No description available
Fs | No description available
Ft | No description available
Fu | No description available
Fv | No description available
Fw | No description available
Fx | No description available
Fy | No description available
Fz | No description available
G | No description available
GA | No description available
GB | No description available
GC | No description available
GD | No description available
GE | No description available
GF | No description available
GG | No description available
GH | No description available
GI | No description available
GJ | No description available
GK | No description available
GL | No description available
GM | No description available
GN | No description available
GO | No description available
GP | No description available
GQ | No description available
GR | No description available
GS | No description available
GT | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
T | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> select #1/FN
522 atoms, 530 bonds, 69 residues, 1 model selected
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/manualAnnotation.cxs"
Opened cryosparc_P31_J245_map_sharp_Zflipped.mrc as #1.1.1.1, grid size
290,290,290, pixel 1.16, shown at level 0.337, step 1, values float32
opened ChimeraX session
> color #1 gray
> color
> #1/L,W,FJ,y,FR,Ee,6,F1,Ei,Eq,Ek,Q,Eg,E8,d,Fa,Es,GJ,EZ,F7,EV,FH,0,Ew,Ec,Fq,GV,EJ,FT,c,x,F6,FZ,FN,Fg,Em,Ea,1,Ep,E5,k,EO,FQ,o,FI,Er,m,Ej,v,Fx,ES,FM,FA,j,FY,q,Eb,s,Fh,Ev,Fd,Ez,El,Et,u,E2,n,FC,EQ,FW
> magenta
> color
> #1/GC,Bd,Ca,AP,BN,FF,Fo,Cy,EY,FV,Ey,K,Gc,Ex,E6,Ai,U,GO,Z,Fc,2,E,Ff,BM,A,Ef,Bi,GM,4,D,CN,FG,GH,GW,Fj,E4,Er,ER,Fz,p,Dk,Bz,Br,F6,q,Aw,X,Y,9,c,Ge,Du,Ad,t,FU,By,AH,Dq,GT,DS,Fp,7,8,FJ,Fu,D6,Dl,Dk,Dt,C2,GR,FK,Gb,BA,B9,Ej,AC,k,Fn,o,AE,C8,Bo,Ep,GU,FE,Az,J,AK,Cj,h,i,Cw,As,r,l,BD,GA,a,En,Eo,GQ,B2,AB,FM,BG,A8,B0,C1,GN,FL,FP
> green
> transparency 0
> transparency 50
> view #7/468
No objects specified.
> view #7:468
> show #7 models
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
Summary of feedback from opening
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #15
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A3 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF | No description available
AH Ck Du | No description available
AK DC | No description available
AL | No description available
AN | No description available
AP | No description available
AQ BE CD DN Df Dl Dn Gj | No description available
AU | No description available
AY | No description available
AZ | No description available
Ab | No description available
Ad | No description available
Ae S | No description available
Af | No description available
Ah | No description available
Aj | No description available
Al | No description available
Am | No description available
Aq C5 Ct Cv DV | No description available
As E | No description available
Av | No description available
Aw | No description available
Ay B3 | No description available
Az | No description available
B | No description available
B1 | No description available
BB | No description available
BD | No description available
BK | No description available
BL | No description available
BO | No description available
BS | No description available
BU | No description available
BW | No description available
Bi | No description available
Bk | No description available
Br U | No description available
Bu | No description available
Bx | No description available
Bz | No description available
C | No description available
C2 | No description available
CC | No description available
CE | No description available
CG | No description available
CT | No description available
CW | No description available
CY | No description available
Cd | No description available
Ch | No description available
Cl | No description available
D | No description available
D9 | No description available
DB | No description available
DF | No description available
DS | No description available
DY | No description available
E0 | No description available
E1 | No description available
E2 | No description available
E3 | No description available
E4 | No description available
E5 | No description available
E6 | No description available
E7 | No description available
E8 | No description available
E9 | No description available
EJ | No description available
EK | No description available
EL | No description available
EM | No description available
EN | No description available
EO | No description available
EP | No description available
EQ | No description available
ER | No description available
ES | No description available
ET | No description available
EU | No description available
EV | No description available
EW | No description available
EX | No description available
EY | No description available
EZ | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Eg | No description available
Eh | No description available
Ei | No description available
Ej | No description available
Ek | No description available
El | No description available
Em | No description available
En | No description available
Eo | No description available
Ep | No description available
Eq | No description available
Er | No description available
Es | No description available
Et | No description available
Eu | No description available
Ev | No description available
Ew | No description available
Ex | No description available
Ey | No description available
Ez | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 | No description available
F4 | No description available
F5 | No description available
F6 | No description available
F7 | No description available
F8 | No description available
F9 | No description available
FA | No description available
FB | No description available
FC | No description available
FD | No description available
FE | No description available
FF | No description available
FG | No description available
FH | No description available
FI | No description available
FJ | No description available
FK | No description available
FL | No description available
FM | No description available
FN | No description available
FO | No description available
FP | No description available
FQ | No description available
FR | No description available
FS | No description available
FT | No description available
FU | No description available
FV | No description available
FW | No description available
FX | No description available
FY | No description available
FZ | No description available
Fa | No description available
Fb | No description available
Fc | No description available
Fd | No description available
Fe | No description available
Ff | No description available
Fg | No description available
Fh | No description available
Fi | No description available
Fj | No description available
Fk | No description available
Fl | No description available
Fm | No description available
Fn | No description available
Fo | No description available
Fp | No description available
Fq | No description available
Fr | No description available
Fs | No description available
Ft | No description available
Fu | No description available
Fv | No description available
Fw | No description available
Fx | No description available
Fy | No description available
Fz | No description available
G | No description available
GA | No description available
GB | No description available
GC | No description available
GD | No description available
GE | No description available
GF | No description available
GG | No description available
GH | No description available
GI | No description available
GJ | No description available
GK | No description available
GL | No description available
GM | No description available
GN | No description available
GO | No description available
GP | No description available
GQ | No description available
GR | No description available
GS | No description available
GT | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
T | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> select #15
39855 atoms, 40483 bonds, 5089 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> select clear
> delete #14/FN:35
> delete #15/FN:35
> renumber #14/FN:36-69 start 45
No residues specified
> renumber #15/FN:36-69 start 45
34 residues renumbered
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/Dk
Nothing selected
471
472
>1
> renumber #16/Dk start 472
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> hide #!15 models
> show #!15 models
> select #15/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> view #15/Dk
> show sel atoms
> style sel stick
Changed 8 atom styles
> view #7:468
> select #15/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> style sel stick
Changed 8 atom styles
> select #15/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #15/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 9 atom styles
> close #16
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #16/DK start 472
1 residues renumbered
> changechains #16/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #16/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #16/Dt start 473
1 residues renumbered
> changechains #16/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #16/C2 start 474
2 residues renumbered
> changechains #16/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #16/GR start 476
3 residues renumbered
> changechains #16/GR 4
Chain IDs of 3 residues changed
['11', '32']
> select #16/FN
518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected
478
435
>-43
> delete #16/FN:44
> delete #16/FN:43
> delete #16/FN:42
> delete #16/FN:41
> delete #16/FN:40
> delete #16/FN:39
> delete #16/FN:38
> delete #16/FN:37
> delete #16/FN:36
> delete #16/FN:35
> delete #16/FN:34
> delete #16/FN:33
> delete #16/FN:32
> delete #16/FN:31
> delete #16/FN:30
> delete #16/FN:29
> delete #16/FN:28
> delete #16/FN:27
> delete #16/FN:26
> delete #16/FN:25
> delete #16/FN:24
> delete #16/FN:23
> delete #16/FN:22
> delete #16/FN:21
> delete #16/FN:20
> delete #16/FN:19
> delete #16/FN:18
> delete #16/FN:17
> delete #16/FN:16
> delete #16/FN:15
> delete #16/FN:14
> delete #16/FN:13
> delete #16/FN:12
> delete #16/FN:11
> delete #16/FN:10
> delete #16/FN:9
> delete #16/FN:8
> delete #16/FN:7
> delete #16/FN:6
> delete #16/FN:5
> delete #16/FN:4
> delete #16/FN:3
> delete #16/FN:2
> delete #16/FN:1
> renumber #16/FN start 479
34 residues renumbered
> changechains #16/FN 4
Chain IDs of 34 residues changed
['1', '12']
> select #16/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
502
511
>9
> renumber #16/FK start 511
12 residues renumbered
> changechains #16/FK 4
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 190, in
run(session, f'changechains {outModel}/{hC} {firstChain}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains
raise UserError("Proposed chainID change conflicts with existing residue %s" %
r)
chimerax.core.errors.UserError: Proposed chainID change conflicts with
existing residue renamedAndRenumberedModel #16/4 ALA 511
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> hide #!15 models
> hide #1.2 models
> show #!15 models
> hide #!15 models
> show #!15 models
> close #16
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['11', '32']
['11', '32']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #16/DK start 472
1 residues renumbered
> changechains #16/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #16/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #16/Dt start 473
1 residues renumbered
> changechains #16/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #16/C2 start 474
2 residues renumbered
> changechains #16/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #16/GR start 476
3 residues renumbered
> changechains #16/GR 4
Chain IDs of 3 residues changed
['11', '32']
> select #16/FN
518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected
478
435
>-43
> delete #16/FN:44
> delete #16/FN:43
> delete #16/FN:42
> delete #16/FN:41
> delete #16/FN:40
> delete #16/FN:39
> delete #16/FN:38
> delete #16/FN:37
> delete #16/FN:36
> delete #16/FN:35
> delete #16/FN:34
> delete #16/FN:33
> delete #16/FN:32
> delete #16/FN:31
> delete #16/FN:30
> delete #16/FN:29
> delete #16/FN:28
> delete #16/FN:27
> delete #16/FN:26
> delete #16/FN:25
> delete #16/FN:24
> delete #16/FN:23
> delete #16/FN:22
> delete #16/FN:21
> delete #16/FN:20
> delete #16/FN:19
> delete #16/FN:18
> delete #16/FN:17
> delete #16/FN:16
> delete #16/FN:15
> delete #16/FN:14
> delete #16/FN:13
> delete #16/FN:12
> delete #16/FN:11
> delete #16/FN:10
> delete #16/FN:9
> delete #16/FN:8
> delete #16/FN:7
> delete #16/FN:6
> delete #16/FN:5
> delete #16/FN:4
> delete #16/FN:3
> delete #16/FN:2
> delete #16/FN:1
> renumber #16/FN start 479
34 residues renumbered
> changechains #16/FN 4
Chain IDs of 34 residues changed
['1', '12']
> select #16/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
502
511
>9
> renumber #16/FK start 511
12 residues renumbered
> changechains #16/FK 4
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 190, in
run(session, f'changechains {outModel}/{hC} {firstChain}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/change_chains/cmd.py", line 91, in cmd_change_chains
raise UserError("Proposed chainID change conflicts with existing residue %s" %
r)
chimerax.core.errors.UserError: Proposed chainID change conflicts with
existing residue renamedAndRenumberedModel #16/4 ALA 511
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> hide #!15 models
> close #16
> show #!15 models
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['11']
['1', '1']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #16/DK start 472
1 residues renumbered
> changechains #16/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #16/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #16/Dt start 473
1 residues renumbered
> changechains #16/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #16/C2 start 474
2 residues renumbered
> changechains #16/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #16/GR start 476
3 residues renumbered
> changechains #16/GR 4
Chain IDs of 3 residues changed
['1', '12']
> select #16/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
478
511
>33
> renumber #16/FK start 511
12 residues renumbered
> changechains #16/FK 4
Chain IDs of 12 residues changed
['1', '3']
> select #16/Gb
19 atoms, 18 bonds, 3 residues, 1 model selected
522
524
>2
> renumber #16/Gb start 524
3 residues renumbered
> changechains #16/Gb 4
Chain IDs of 3 residues changed
Renumering chain sp|P14548.2|CYB_LEITA_A
['2', '15']
> select #16/FI
436 atoms, 446 bonds, 53 residues, 1 model selected
0
2
>2
> renumber #16/FI start 2
53 residues renumbered
['1', '1']
> select #16/BA
11 atoms, 11 bonds, 1 residue, 1 model selected
54
55
>1
> renumber #16/BA start 55
1 residues renumbered
> changechains #16/BA FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/B9
5 atoms, 4 bonds, 1 residue, 1 model selected
55
56
>1
> renumber #16/B9 start 56
1 residues renumbered
> changechains #16/B9 FI
Chain IDs of 1 residues changed
['1', '153']
> select #16/Ej
1293 atoms, 1333 bonds, 153 residues, 1 model selected
56
57
>1
> renumber #16/Ej start 57
153 residues renumbered
> changechains #16/Ej FI
Chain IDs of 153 residues changed
['1', '1']
> select #16/AC
12 atoms, 12 bonds, 1 residue, 1 model selected
209
210
>1
> renumber #16/AC start 210
1 residues renumbered
> changechains #16/AC FI
Chain IDs of 1 residues changed
['1', '39']
> select #16/k
358 atoms, 372 bonds, 39 residues, 1 model selected
210
211
>1
> renumber #16/k start 211
39 residues renumbered
> changechains #16/k FI
Chain IDs of 39 residues changed
['1', '27']
> select #16/Fn
200 atoms, 203 bonds, 27 residues, 1 model selected
249
250
>1
> renumber #16/Fn start 250
27 residues renumbered
> changechains #16/Fn FI
Chain IDs of 27 residues changed
['1', '37']
> select #16/o
318 atoms, 331 bonds, 37 residues, 1 model selected
276
276
>0
> delete #16/o:1
> renumber #16/o start 277
36 residues renumbered
> changechains #16/o FI
Chain IDs of 36 residues changed
['1', '2']
> select #16/AE
22 atoms, 23 bonds, 2 residues, 1 model selected
312
313
>1
> renumber #16/AE start 313
2 residues renumbered
> changechains #16/AE FI
Chain IDs of 2 residues changed
['1', '1']
> select #16/C8
7 atoms, 7 bonds, 1 residue, 1 model selected
314
318
>4
> renumber #16/C8 start 318
1 residues renumbered
> changechains #16/C8 FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/Bo
14 atoms, 15 bonds, 1 residue, 1 model selected
318
319
>1
> renumber #16/Bo start 319
1 residues renumbered
> changechains #16/Bo FI
Chain IDs of 1 residues changed
['1', '56']
> select #16/Ep
472 atoms, 486 bonds, 56 residues, 1 model selected
319
320
>1
> renumber #16/Ep start 320
56 residues renumbered
> changechains #16/Ep FI
Chain IDs of 56 residues changed
Renumering chain LtaP35.0210.mRNA_A
['1', '9']
> select #16/GU
72 atoms, 72 bonds, 9 residues, 1 model selected
0
1
>1
> renumber #16/GU start 1
0 residues renumbered
['1', '4']
> select #16/FE
28 atoms, 28 bonds, 4 residues, 1 model selected
9
10
>1
> renumber #16/FE start 10
4 residues renumbered
> changechains #16/FE GU
Chain IDs of 4 residues changed
['1', '2']
> select #16/Az
12 atoms, 11 bonds, 2 residues, 1 model selected
13
14
>1
> renumber #16/Az start 14
2 residues renumbered
> changechains #16/Az GU
Chain IDs of 2 residues changed
['1', '3']
> select #16/J
21 atoms, 20 bonds, 3 residues, 1 model selected
15
16
>1
> renumber #16/J start 16
3 residues renumbered
> changechains #16/J GU
Chain IDs of 3 residues changed
['1', '2']
> select #16/AK
12 atoms, 11 bonds, 2 residues, 1 model selected
18
19
>1
> renumber #16/AK start 19
2 residues renumbered
> changechains #16/AK GU
Chain IDs of 2 residues changed
['1', '1']
> select #16/Cj
11 atoms, 10 bonds, 1 residue, 1 model selected
20
20
>0
> delete #16/Cj:1
> renumber #16/Cj start 21
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> close #16
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['2', '4']
['2', '4']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #16/DK start 472
1 residues renumbered
> changechains #16/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #16/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #16/Dt start 473
1 residues renumbered
> changechains #16/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #16/C2 start 474
2 residues renumbered
> changechains #16/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #16/GR start 476
3 residues renumbered
> changechains #16/GR 4
Chain IDs of 3 residues changed
['1', '12']
> select #16/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
478
511
>33
> renumber #16/FK start 511
12 residues renumbered
> changechains #16/FK 4
Chain IDs of 12 residues changed
['1', '3']
> select #16/Gb
19 atoms, 18 bonds, 3 residues, 1 model selected
522
524
>2
> renumber #16/Gb start 524
3 residues renumbered
> changechains #16/Gb 4
Chain IDs of 3 residues changed
Renumering chain sp|P14548.2|CYB_LEITA_A
['2', '15']
> select #16/FI
436 atoms, 446 bonds, 53 residues, 1 model selected
0
2
>2
> renumber #16/FI start 2
53 residues renumbered
['1', '1']
> select #16/BA
11 atoms, 11 bonds, 1 residue, 1 model selected
54
55
>1
> renumber #16/BA start 55
1 residues renumbered
> changechains #16/BA FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/B9
5 atoms, 4 bonds, 1 residue, 1 model selected
55
56
>1
> renumber #16/B9 start 56
1 residues renumbered
> changechains #16/B9 FI
Chain IDs of 1 residues changed
['1', '153']
> select #16/Ej
1293 atoms, 1333 bonds, 153 residues, 1 model selected
56
57
>1
> renumber #16/Ej start 57
153 residues renumbered
> changechains #16/Ej FI
Chain IDs of 153 residues changed
['1', '1']
> select #16/AC
12 atoms, 12 bonds, 1 residue, 1 model selected
209
210
>1
> renumber #16/AC start 210
1 residues renumbered
> changechains #16/AC FI
Chain IDs of 1 residues changed
['1', '39']
> select #16/k
358 atoms, 372 bonds, 39 residues, 1 model selected
210
211
>1
> renumber #16/k start 211
39 residues renumbered
> changechains #16/k FI
Chain IDs of 39 residues changed
['1', '27']
> select #16/Fn
200 atoms, 203 bonds, 27 residues, 1 model selected
249
250
>1
> renumber #16/Fn start 250
27 residues renumbered
> changechains #16/Fn FI
Chain IDs of 27 residues changed
['1', '37']
> select #16/o
318 atoms, 331 bonds, 37 residues, 1 model selected
276
276
>0
> delete #16/o:1
> renumber #16/o start 277
36 residues renumbered
> changechains #16/o FI
Chain IDs of 36 residues changed
['1', '2']
> select #16/AE
22 atoms, 23 bonds, 2 residues, 1 model selected
312
313
>1
> renumber #16/AE start 313
2 residues renumbered
> changechains #16/AE FI
Chain IDs of 2 residues changed
['1', '1']
> select #16/C8
7 atoms, 7 bonds, 1 residue, 1 model selected
314
318
>4
> renumber #16/C8 start 318
1 residues renumbered
> changechains #16/C8 FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/Bo
14 atoms, 15 bonds, 1 residue, 1 model selected
318
319
>1
> renumber #16/Bo start 319
1 residues renumbered
> changechains #16/Bo FI
Chain IDs of 1 residues changed
['1', '56']
> select #16/Ep
472 atoms, 486 bonds, 56 residues, 1 model selected
319
320
>1
> renumber #16/Ep start 320
56 residues renumbered
> changechains #16/Ep FI
Chain IDs of 56 residues changed
Renumering chain LtaP35.0210.mRNA_A
['1', '9']
> select #16/GU
72 atoms, 72 bonds, 9 residues, 1 model selected
0
1
>1
> renumber #16/GU start 1
0 residues renumbered
['1', '4']
> select #16/FE
28 atoms, 28 bonds, 4 residues, 1 model selected
9
10
>1
> renumber #16/FE start 10
4 residues renumbered
> changechains #16/FE GU
Chain IDs of 4 residues changed
['1', '2']
> select #16/Az
12 atoms, 11 bonds, 2 residues, 1 model selected
13
14
>1
> renumber #16/Az start 14
2 residues renumbered
> changechains #16/Az GU
Chain IDs of 2 residues changed
['1', '3']
> select #16/J
21 atoms, 20 bonds, 3 residues, 1 model selected
15
16
>1
> renumber #16/J start 16
3 residues renumbered
> changechains #16/J GU
Chain IDs of 3 residues changed
['1', '2']
> select #16/AK
12 atoms, 11 bonds, 2 residues, 1 model selected
18
19
>1
> renumber #16/AK start 19
2 residues renumbered
> changechains #16/AK GU
Chain IDs of 2 residues changed
['1', '10']
> select #16/h
86 atoms, 88 bonds, 10 residues, 1 model selected
20
21
>1
> renumber #16/h start 21
10 residues renumbered
> changechains #16/h GU
Chain IDs of 10 residues changed
['1', '4']
> select #16/i
44 atoms, 46 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/i start 31
4 residues renumbered
> changechains #16/i GU
Chain IDs of 4 residues changed
['1', '1']
> select #16/Cw
8 atoms, 7 bonds, 1 residue, 1 model selected
34
35
>1
> renumber #16/Cw start 35
1 residues renumbered
> changechains #16/Cw GU
Chain IDs of 1 residues changed
['1', '2']
> select #16/As
16 atoms, 16 bonds, 2 residues, 1 model selected
35
36
>1
> renumber #16/As start 36
2 residues renumbered
> changechains #16/As GU
Chain IDs of 2 residues changed
['1', '30']
> select #16/r
242 atoms, 242 bonds, 30 residues, 1 model selected
37
38
>1
> renumber #16/r start 38
30 residues renumbered
> changechains #16/r GU
Chain IDs of 30 residues changed
['3', '45']
> select #16/E5
401 atoms, 418 bonds, 48 residues, 1 model selected
67
68
>1
> renumber #16/E5 start 68
48 residues renumbered
> changechains #16/E5 GU
Chain IDs of 48 residues changed
['1', '9']
> select #16/l
68 atoms, 68 bonds, 9 residues, 1 model selected
115
116
>1
> renumber #16/l start 116
9 residues renumbered
> changechains #16/l GU
Chain IDs of 9 residues changed
['2', '4']
> select #16/FW
101 atoms, 104 bonds, 13 residues, 1 model selected
124
125
>1
> renumber #16/FW start 125
13 residues renumbered
> changechains #16/FW GU
Chain IDs of 13 residues changed
['1', '2']
> select #16/BD
11 atoms, 10 bonds, 2 residues, 1 model selected
137
125
>-12
> delete #16/BD:13
> delete #16/BD:12
> delete #16/BD:11
> delete #16/BD:10
> delete #16/BD:9
> delete #16/BD:8
> delete #16/BD:7
> delete #16/BD:6
> delete #16/BD:5
> delete #16/BD:4
> delete #16/BD:3
> delete #16/BD:2
> delete #16/BD:1
> renumber #16/BD start 138
Traceback (most recent call last):
File "/Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py",
line 188, in
run(session, f'renumber {outModel}/{hC} start {newStart}')
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/rafaelrocha/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/renumber_residues/cmd.py", line 31, in cmd_renumber
raise UserError("No residues specified")
chimerax.core.errors.UserError: No residues specified
Error opening python file /Users/rafaelrocha/Library/CloudStorage/OneDrive-
Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> close #16
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #15 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #15 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #16/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #16/GC start 17
8 residues renumbered
['1', '1']
> select #16/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #16/Bd start 25
1 residues renumbered
> changechains #16/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #16/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #16/Ca start 26
1 residues renumbered
> changechains #16/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #16/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #16/AP start 27
3 residues renumbered
> changechains #16/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #16/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #16/BN start 30
1 residues renumbered
> changechains #16/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #16/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/FF start 31
4 residues renumbered
> changechains #16/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #16/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #16/Fo start 35
15 residues renumbered
> changechains #16/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #16/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #16/Cy start 50
1 residues renumbered
> changechains #16/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #16/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #16/EY start 51
9 residues renumbered
> changechains #16/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #16/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #16/FV start 60
4 residues renumbered
> changechains #16/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #16/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #16/Ey start 64
28 residues renumbered
> changechains #16/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #16/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #16/K start 92
15 residues renumbered
> changechains #16/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #16/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #16/L start 107
22 residues renumbered
> changechains #16/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #16/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #16/Ee start 129
44 residues renumbered
> changechains #16/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #16/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #16/Gc start 2
7 residues renumbered
['1', '8']
> select #16/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #16/Ex start 10
8 residues renumbered
> changechains #16/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #16/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #16/E6 start 18
13 residues renumbered
> changechains #16/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #16/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #16/Ai start 31
1 residues renumbered
> changechains #16/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #16/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #16/0 start 32
31 residues renumbered
> changechains #16/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #16/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #16/U start 63
2 residues renumbered
> changechains #16/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #16/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #16/d start 65
22 residues renumbered
> changechains #16/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #16/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #16/EV start 87
21 residues renumbered
> changechains #16/EV Gc
Chain IDs of 21 residues changed
> delete #16/Ew:132
> renumber #16/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #16/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #16/Ew start 108
142 residues renumbered
> changechains #16/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #16/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #16/GO start 250
3 residues renumbered
> changechains #16/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #16/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #16/Z start 253
8 residues renumbered
> changechains #16/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #16/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #16/ES start 262
18 residues renumbered
> changechains #16/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #16/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #16/Fc start 282
7 residues renumbered
> changechains #16/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #16/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #16/Fa start 289
24 residues renumbered
> changechains #16/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #16/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #16/2 start 314
10 residues renumbered
> changechains #16/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #16/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #16/E start 326
2 residues renumbered
> changechains #16/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #16/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #16/Ff start 328
10 residues renumbered
> changechains #16/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #16/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #16/E2 start 338
132 residues renumbered
> changechains #16/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #16/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #16/W start 470
20 residues renumbered
> changechains #16/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #16/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #16/BM start 490
1 residues renumbered
> changechains #16/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #16/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #16/A start 5
5 residues renumbered
['5', '33']
> select #16/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #16/Fd start 10
36 residues renumbered
> changechains #16/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #16/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #16/Ef start 46
4 residues renumbered
> changechains #16/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #16/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #16/Eg start 50
74 residues renumbered
> changechains #16/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #16/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #16/j start 124
22 residues renumbered
> changechains #16/j A
Chain IDs of 22 residues changed
> renumber #16/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #16/Ei:6@C #16/Ei:8@N
['2', '21']
> select #16/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #16/Ei:1
> renumber #16/Ei start 146
24 residues renumbered
> changechains #16/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #16/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #16/Bi:3
> delete #16/Bi:2
> delete #16/Bi:1
> renumber #16/Bi start 171
1 residues renumbered
> changechains #16/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #16/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #16/GM:1
> renumber #16/GM start 172
2 residues renumbered
> changechains #16/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #16/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #16/E8 start 174
86 residues renumbered
> changechains #16/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #16/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #16/N start 34
8 residues renumbered
['1', '5']
> select #16/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #16/GZ start 42
5 residues renumbered
> changechains #16/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #16/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #16/FT start 47
101 residues renumbered
> changechains #16/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #16/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #16/4 start 25
5 residues renumbered
['1', '3']
> select #16/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #16/D start 30
3 residues renumbered
> changechains #16/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #16/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #16/CN start 33
1 residues renumbered
> changechains #16/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #16/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #16/FG start 34
7 residues renumbered
> changechains #16/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #16/GH start 57
14 residues renumbered
> changechains #16/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #16/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #16/GW start 71
5 residues renumbered
> changechains #16/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #16/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #16/Fj start 76
4 residues renumbered
> changechains #16/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #16/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #16/E4 start 80
7 residues renumbered
> changechains #16/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #16/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #16/Er start 87
14 residues renumbered
> changechains #16/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #16/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #16/ER start 101
25 residues renumbered
> changechains #16/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #16/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #16/Fz:2
> delete #16/Fz:1
> renumber #16/Fz start 126
18 residues renumbered
> changechains #16/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #16/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #16/p start 144
8 residues renumbered
> changechains #16/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #16/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #16/Dk start 152
1 residues renumbered
> changechains #16/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #16/Bz start 153
2 residues renumbered
> changechains #16/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #16/Br start 155
2 residues renumbered
> changechains #16/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #16/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #16/F6 start 181
18 residues renumbered
> changechains #16/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #16/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #16/q start 200
70 residues renumbered
> changechains #16/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #16/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #16/Aw start 270
2 residues renumbered
> changechains #16/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #16/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #16/X start 272
2 residues renumbered
> changechains #16/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #16/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #16/Y start 274
12 residues renumbered
> changechains #16/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #16/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #16/9 start 286
5 residues renumbered
> changechains #16/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #16/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #16/c:1
> renumber #16/c start 291
13 residues renumbered
> changechains #16/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #16/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #16/Ge start 304
3 residues renumbered
> changechains #16/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #16/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #16/Du start 309
2 residues renumbered
> changechains #16/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #16/Ad start 311
3 residues renumbered
> changechains #16/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #16/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #16/t start 314
7 residues renumbered
> changechains #16/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #16/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #16/FU start 321
32 residues renumbered
> changechains #16/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #16/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #16/By start 353
1 residues renumbered
> changechains #16/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #16/AH start 354
2 residues renumbered
> changechains #16/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #16/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #16/GV start 356
24 residues renumbered
> changechains #16/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #16/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #16/Dq start 380
1 residues renumbered
> changechains #16/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #16/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #16/GT start 381
4 residues renumbered
> changechains #16/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #16/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #16/DS start 387
2 residues renumbered
> changechains #16/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #16/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #16/Fp start 389
10 residues renumbered
> changechains #16/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #16/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #16/7 start 399
5 residues renumbered
> changechains #16/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #16/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #16/8 start 404
2 residues renumbered
> changechains #16/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #16/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #16/FJ start 407
20 residues renumbered
> changechains #16/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #16/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #16/Fu:1
> renumber #16/Fu start 427
6 residues renumbered
> changechains #16/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #16/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #16/D6 start 469
1 residues renumbered
> changechains #16/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #16/Dl start 470
2 residues renumbered
> changechains #16/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #16/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #16/DK start 472
1 residues renumbered
> changechains #16/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #16/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #16/Dt start 473
1 residues renumbered
> changechains #16/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #16/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #16/C2 start 474
2 residues renumbered
> changechains #16/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #16/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #16/GR start 476
3 residues renumbered
> changechains #16/GR 4
Chain IDs of 3 residues changed
['1', '12']
> select #16/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
478
511
>33
> renumber #16/FK start 511
12 residues renumbered
> changechains #16/FK 4
Chain IDs of 12 residues changed
['1', '3']
> select #16/Gb
19 atoms, 18 bonds, 3 residues, 1 model selected
522
524
>2
> renumber #16/Gb start 524
3 residues renumbered
> changechains #16/Gb 4
Chain IDs of 3 residues changed
Renumering chain sp|P14548.2|CYB_LEITA_A
['2', '15']
> select #16/FI
436 atoms, 446 bonds, 53 residues, 1 model selected
0
2
>2
> renumber #16/FI start 2
53 residues renumbered
['1', '1']
> select #16/BA
11 atoms, 11 bonds, 1 residue, 1 model selected
54
55
>1
> renumber #16/BA start 55
1 residues renumbered
> changechains #16/BA FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/B9
5 atoms, 4 bonds, 1 residue, 1 model selected
55
56
>1
> renumber #16/B9 start 56
1 residues renumbered
> changechains #16/B9 FI
Chain IDs of 1 residues changed
['1', '153']
> select #16/Ej
1293 atoms, 1333 bonds, 153 residues, 1 model selected
56
57
>1
> renumber #16/Ej start 57
153 residues renumbered
> changechains #16/Ej FI
Chain IDs of 153 residues changed
['1', '1']
> select #16/AC
12 atoms, 12 bonds, 1 residue, 1 model selected
209
210
>1
> renumber #16/AC start 210
1 residues renumbered
> changechains #16/AC FI
Chain IDs of 1 residues changed
['1', '39']
> select #16/k
358 atoms, 372 bonds, 39 residues, 1 model selected
210
211
>1
> renumber #16/k start 211
39 residues renumbered
> changechains #16/k FI
Chain IDs of 39 residues changed
['1', '27']
> select #16/Fn
200 atoms, 203 bonds, 27 residues, 1 model selected
249
250
>1
> renumber #16/Fn start 250
27 residues renumbered
> changechains #16/Fn FI
Chain IDs of 27 residues changed
['1', '37']
> select #16/o
318 atoms, 331 bonds, 37 residues, 1 model selected
276
276
>0
> delete #16/o:1
> renumber #16/o start 277
36 residues renumbered
> changechains #16/o FI
Chain IDs of 36 residues changed
['1', '2']
> select #16/AE
22 atoms, 23 bonds, 2 residues, 1 model selected
312
313
>1
> renumber #16/AE start 313
2 residues renumbered
> changechains #16/AE FI
Chain IDs of 2 residues changed
['1', '1']
> select #16/C8
7 atoms, 7 bonds, 1 residue, 1 model selected
314
318
>4
> renumber #16/C8 start 318
1 residues renumbered
> changechains #16/C8 FI
Chain IDs of 1 residues changed
['1', '1']
> select #16/Bo
14 atoms, 15 bonds, 1 residue, 1 model selected
318
319
>1
> renumber #16/Bo start 319
1 residues renumbered
> changechains #16/Bo FI
Chain IDs of 1 residues changed
['1', '56']
> select #16/Ep
472 atoms, 486 bonds, 56 residues, 1 model selected
319
320
>1
> renumber #16/Ep start 320
56 residues renumbered
> changechains #16/Ep FI
Chain IDs of 56 residues changed
Renumering chain LtaP35.0210.mRNA_A
['1', '9']
> select #16/GU
72 atoms, 72 bonds, 9 residues, 1 model selected
0
1
>1
> renumber #16/GU start 1
0 residues renumbered
['1', '4']
> select #16/FE
28 atoms, 28 bonds, 4 residues, 1 model selected
9
10
>1
> renumber #16/FE start 10
4 residues renumbered
> changechains #16/FE GU
Chain IDs of 4 residues changed
['1', '2']
> select #16/Az
12 atoms, 11 bonds, 2 residues, 1 model selected
13
14
>1
> renumber #16/Az start 14
2 residues renumbered
> changechains #16/Az GU
Chain IDs of 2 residues changed
['1', '3']
> select #16/J
21 atoms, 20 bonds, 3 residues, 1 model selected
15
16
>1
> renumber #16/J start 16
3 residues renumbered
> changechains #16/J GU
Chain IDs of 3 residues changed
['1', '2']
> select #16/AK
12 atoms, 11 bonds, 2 residues, 1 model selected
18
19
>1
> renumber #16/AK start 19
2 residues renumbered
> changechains #16/AK GU
Chain IDs of 2 residues changed
['1', '10']
> select #16/h
86 atoms, 88 bonds, 10 residues, 1 model selected
20
21
>1
> renumber #16/h start 21
10 residues renumbered
> changechains #16/h GU
Chain IDs of 10 residues changed
['1', '4']
> select #16/i
44 atoms, 46 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #16/i start 31
4 residues renumbered
> changechains #16/i GU
Chain IDs of 4 residues changed
['1', '1']
> select #16/Cw
8 atoms, 7 bonds, 1 residue, 1 model selected
34
35
>1
> renumber #16/Cw start 35
1 residues renumbered
> changechains #16/Cw GU
Chain IDs of 1 residues changed
['1', '2']
> select #16/As
16 atoms, 16 bonds, 2 residues, 1 model selected
35
36
>1
> renumber #16/As start 36
2 residues renumbered
> changechains #16/As GU
Chain IDs of 2 residues changed
['1', '30']
> select #16/r
242 atoms, 242 bonds, 30 residues, 1 model selected
37
38
>1
> renumber #16/r start 38
30 residues renumbered
> changechains #16/r GU
Chain IDs of 30 residues changed
['3', '45']
> select #16/E5
401 atoms, 418 bonds, 48 residues, 1 model selected
67
68
>1
> renumber #16/E5 start 68
48 residues renumbered
> changechains #16/E5 GU
Chain IDs of 48 residues changed
['1', '9']
> select #16/l
68 atoms, 68 bonds, 9 residues, 1 model selected
115
116
>1
> renumber #16/l start 116
9 residues renumbered
> changechains #16/l GU
Chain IDs of 9 residues changed
['1', '2']
> select #16/BD
11 atoms, 10 bonds, 2 residues, 1 model selected
124
125
>1
> renumber #16/BD start 125
2 residues renumbered
> changechains #16/BD GU
Chain IDs of 2 residues changed
['1', '59']
> select #16/Em
552 atoms, 567 bonds, 65 residues, 1 model selected
126
127
>1
> renumber #16/Em start 127
65 residues renumbered
> changechains #16/Em GU
Chain IDs of 65 residues changed
['1', '13']
> select #16/FW
101 atoms, 104 bonds, 13 residues, 1 model selected
191
191
>0
> delete #16/FW:1
> renumber #16/FW start 192
12 residues renumbered
> changechains #16/FW GU
Chain IDs of 12 residues changed
Renumering chain GET91263.1_A
['1', '34']
> select #16/FL
257 atoms, 261 bonds, 34 residues, 1 model selected
0
4
>4
> renumber #16/FL start 4
34 residues renumbered
['1', '5']
> select #16/FP
31 atoms, 31 bonds, 5 residues, 1 model selected
37
39
>2
> renumber #16/FP start 39
5 residues renumbered
> changechains #16/FP FL
Chain IDs of 5 residues changed
['3', '25']
> select #16/1
220 atoms, 226 bonds, 26 residues, 1 model selected
43
45
>2
> renumber #16/1 start 45
26 residues renumbered
> changechains #16/1 FL
Chain IDs of 26 residues changed
Renumering chain LtaP35.0250.mRNA_A
['1', '4']
> select #16/GA
26 atoms, 27 bonds, 4 residues, 1 model selected
0
13
>13
> renumber #16/GA start 13
4 residues renumbered
['1', '3']
> select #16/a
19 atoms, 18 bonds, 3 residues, 1 model selected
16
17
>1
> renumber #16/a start 17
3 residues renumbered
> changechains #16/a GA
Chain IDs of 3 residues changed
['6', '20']
> select #16/EQ
192 atoms, 194 bonds, 24 residues, 1 model selected
19
20
>1
> renumber #16/EQ start 20
24 residues renumbered
> changechains #16/EQ GA
Chain IDs of 24 residues changed
['1', '11']
> select #16/En
90 atoms, 92 bonds, 11 residues, 1 model selected
43
45
>2
> renumber #16/En start 45
11 residues renumbered
> changechains #16/En GA
Chain IDs of 11 residues changed
['3', '39']
> select #16/m
342 atoms, 353 bonds, 39 residues, 1 model selected
55
57
>2
> renumber #16/m start 57
39 residues renumbered
> changechains #16/m GA
Chain IDs of 39 residues changed
['1', '27']
> select #16/Eo
229 atoms, 235 bonds, 27 residues, 1 model selected
95
96
>1
> renumber #16/Eo start 96
27 residues renumbered
> changechains #16/Eo GA
Chain IDs of 27 residues changed
Renumering chain GET89654.1_A
['1', '21']
> select #16/GQ
149 atoms, 153 bonds, 21 residues, 1 model selected
0
13
>13
> renumber #16/GQ start 13
21 residues renumbered
['1', '1']
> select #16/B2
11 atoms, 11 bonds, 1 residue, 1 model selected
33
34
>1
> renumber #16/B2 start 34
1 residues renumbered
> changechains #16/B2 GQ
Chain IDs of 1 residues changed
['1', '4']
> select #16/AB
32 atoms, 32 bonds, 4 residues, 1 model selected
34
35
>1
> renumber #16/AB start 35
4 residues renumbered
> changechains #16/AB GQ
Chain IDs of 4 residues changed
['2', '33']
> select #16/FM
254 atoms, 256 bonds, 33 residues, 1 model selected
38
39
>1
> renumber #16/FM start 39
33 residues renumbered
> changechains #16/FM GQ
Chain IDs of 33 residues changed
['1', '1']
> select #16/CP
8 atoms, 7 bonds, 1 residue, 1 model selected
71
72
>1
> renumber #16/CP start 72
1 residues renumbered
> changechains #16/CP GQ
Chain IDs of 1 residues changed
['1', '1']
> select #16/BG
4 atoms, 3 bonds, 1 residue, 1 model selected
72
73
>1
> renumber #16/BG start 73
1 residues renumbered
> changechains #16/BG GQ
Chain IDs of 1 residues changed
['1', '2']
> select #16/A8
15 atoms, 15 bonds, 2 residues, 1 model selected
73
74
>1
> renumber #16/A8 start 74
2 residues renumbered
> changechains #16/A8 GQ
Chain IDs of 2 residues changed
['1', '1']
> select #16/B0
4 atoms, 3 bonds, 1 residue, 1 model selected
75
76
>1
> renumber #16/B0 start 76
1 residues renumbered
> changechains #16/B0 GQ
Chain IDs of 1 residues changed
['1', '1']
> select #16/C1
5 atoms, 4 bonds, 1 residue, 1 model selected
76
77
>1
> renumber #16/C1 start 77
1 residues renumbered
> changechains #16/C1 GQ
Chain IDs of 1 residues changed
['1', '8']
> select #16/GN
58 atoms, 58 bonds, 8 residues, 1 model selected
77
78
>1
> renumber #16/GN start 78
8 residues renumbered
> changechains #16/GN GQ
Chain IDs of 8 residues changed
> view #7:468
> hide #!15 models
> renumber #1/FN start 440
69 residues renumbered
> renumber #16/FN start 440
68 residues renumbered
> renumber #16/FN start 434
68 residues renumbered
> renumber #16/FN start 435
68 residues renumbered
> changechains #16/FN 4
Proposed chainID change conflicts with existing residue
renamedAndRenumberedModel #16/4 TYR 511
> seelct #16
Unknown command: seelct #16
> select #16
39770 atoms, 40393 bonds, 3 pseudobonds, 5076 residues, 2 models selected
> show sel atoms
> style sel stick
Changed 39770 atom styles
> renumber #16/FN start 435
0 residues renumbered
> delete #16/FN 505;
Expected a keyword
> delete #16/FN 508;
Expected a keyword
> renumber #16/FN:479-512 start 479 relative false
0 residues renumbered
> delete #16/FN:505
> delete #16/FN:508
> renumber #16/FN:479-512 start 479 relative false
6 residues renumbered
> changechains #16/FN 4
Chain IDs of 66 residues changed
> close session
> open "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif"
Summary of feedback from opening
/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A3 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF | No description available
AH Ck Du | No description available
AK DC | No description available
AL | No description available
AN | No description available
AP | No description available
AQ BE CD DN Df Dl Dn Gj | No description available
AU | No description available
AY | No description available
AZ | No description available
Ab | No description available
Ad | No description available
Ae S | No description available
Af | No description available
Ah | No description available
Aj | No description available
Al | No description available
Am | No description available
Aq C5 Ct Cv DV | No description available
As E | No description available
Av | No description available
Aw | No description available
Ay B3 | No description available
Az | No description available
B | No description available
B1 | No description available
BB | No description available
BD | No description available
BK | No description available
BL | No description available
BO | No description available
BS | No description available
BU | No description available
BW | No description available
Bi | No description available
Bk | No description available
Br U | No description available
Bu | No description available
Bx | No description available
Bz | No description available
C | No description available
C2 | No description available
CC | No description available
CE | No description available
CG | No description available
CT | No description available
CW | No description available
CY | No description available
Cd | No description available
Ch | No description available
Cl | No description available
D | No description available
D9 | No description available
DB | No description available
DF | No description available
DS | No description available
DY | No description available
E0 | No description available
E1 | No description available
E2 | No description available
E3 | No description available
E4 | No description available
E5 | No description available
E6 | No description available
E7 | No description available
E8 | No description available
E9 | No description available
EJ | No description available
EK | No description available
EL | No description available
EM | No description available
EN | No description available
EO | No description available
EP | No description available
EQ | No description available
ER | No description available
ES | No description available
ET | No description available
EU | No description available
EV | No description available
EW | No description available
EX | No description available
EY | No description available
EZ | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Eg | No description available
Eh | No description available
Ei | No description available
Ej | No description available
Ek | No description available
El | No description available
Em | No description available
En | No description available
Eo | No description available
Ep | No description available
Eq | No description available
Er | No description available
Es | No description available
Et | No description available
Eu | No description available
Ev | No description available
Ew | No description available
Ex | No description available
Ey | No description available
Ez | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 | No description available
F4 | No description available
F5 | No description available
F6 | No description available
F7 | No description available
F8 | No description available
F9 | No description available
FA | No description available
FB | No description available
FC | No description available
FD | No description available
FE | No description available
FF | No description available
FG | No description available
FH | No description available
FI | No description available
FJ | No description available
FK | No description available
FL | No description available
FM | No description available
FN | No description available
FO | No description available
FP | No description available
FQ | No description available
FR | No description available
FS | No description available
FT | No description available
FU | No description available
FV | No description available
FW | No description available
FX | No description available
FY | No description available
FZ | No description available
Fa | No description available
Fb | No description available
Fc | No description available
Fd | No description available
Fe | No description available
Ff | No description available
Fg | No description available
Fh | No description available
Fi | No description available
Fj | No description available
Fk | No description available
Fl | No description available
Fm | No description available
Fn | No description available
Fo | No description available
Fp | No description available
Fq | No description available
Fr | No description available
Fs | No description available
Ft | No description available
Fu | No description available
Fv | No description available
Fw | No description available
Fx | No description available
Fy | No description available
Fz | No description available
G | No description available
GA | No description available
GB | No description available
GC | No description available
GD | No description available
GE | No description available
GF | No description available
GG | No description available
GH | No description available
GI | No description available
GJ | No description available
GK | No description available
GL | No description available
GM | No description available
GN | No description available
GO | No description available
GP | No description available
GQ | No description available
GR | No description available
GS | No description available
GT | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
T | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> delete #2/FN:35
> renumber #2/FN:36-69 start 45
No residues specified
> renumber #2/FN start 45
No residues specified
> delete #2/FN:505
> delete #2/FN:508
> renumber #2/FN:479-512 start 479 relative false
No residues specified
> changechains #2/FN 4
No residues specified
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #2/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #2/GC start 17
8 residues renumbered
['1', '1']
> select #2/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #2/Bd start 25
1 residues renumbered
> changechains #2/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #2/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #2/Ca start 26
1 residues renumbered
> changechains #2/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #2/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #2/AP start 27
3 residues renumbered
> changechains #2/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #2/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #2/BN start 30
1 residues renumbered
> changechains #2/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #2/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/FF start 31
4 residues renumbered
> changechains #2/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #2/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #2/Fo start 35
15 residues renumbered
> changechains #2/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #2/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #2/Cy start 50
1 residues renumbered
> changechains #2/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #2/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #2/EY start 51
9 residues renumbered
> changechains #2/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #2/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #2/FV start 60
4 residues renumbered
> changechains #2/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #2/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #2/Ey start 64
28 residues renumbered
> changechains #2/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #2/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #2/K start 92
15 residues renumbered
> changechains #2/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #2/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #2/L start 107
22 residues renumbered
> changechains #2/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #2/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #2/Ee start 129
44 residues renumbered
> changechains #2/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #2/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #2/Gc start 2
7 residues renumbered
['1', '8']
> select #2/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #2/Ex start 10
8 residues renumbered
> changechains #2/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #2/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #2/E6 start 18
13 residues renumbered
> changechains #2/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #2/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #2/Ai start 31
1 residues renumbered
> changechains #2/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #2/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #2/0 start 32
31 residues renumbered
> changechains #2/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #2/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #2/U start 63
2 residues renumbered
> changechains #2/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #2/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #2/d start 65
22 residues renumbered
> changechains #2/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #2/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #2/EV start 87
21 residues renumbered
> changechains #2/EV Gc
Chain IDs of 21 residues changed
> delete #2/Ew:132
> renumber #2/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #2/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #2/Ew start 108
142 residues renumbered
> changechains #2/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #2/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #2/GO start 250
3 residues renumbered
> changechains #2/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #2/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #2/Z start 253
8 residues renumbered
> changechains #2/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #2/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #2/ES start 262
18 residues renumbered
> changechains #2/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #2/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #2/Fc start 282
7 residues renumbered
> changechains #2/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #2/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #2/Fa start 289
24 residues renumbered
> changechains #2/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #2/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #2/2 start 314
10 residues renumbered
> changechains #2/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #2/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #2/E start 326
2 residues renumbered
> changechains #2/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #2/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #2/Ff start 328
10 residues renumbered
> changechains #2/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #2/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #2/E2 start 338
132 residues renumbered
> changechains #2/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #2/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #2/W start 470
20 residues renumbered
> changechains #2/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #2/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #2/BM start 490
1 residues renumbered
> changechains #2/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #2/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #2/A start 5
5 residues renumbered
['5', '33']
> select #2/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #2/Fd start 10
36 residues renumbered
> changechains #2/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #2/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #2/Ef start 46
4 residues renumbered
> changechains #2/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #2/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #2/Eg start 50
74 residues renumbered
> changechains #2/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #2/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #2/j start 124
22 residues renumbered
> changechains #2/j A
Chain IDs of 22 residues changed
> renumber #2/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #2/Ei:6@C #2/Ei:8@N
['2', '21']
> select #2/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #2/Ei:1
> renumber #2/Ei start 146
24 residues renumbered
> changechains #2/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #2/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #2/Bi:3
> delete #2/Bi:2
> delete #2/Bi:1
> renumber #2/Bi start 171
1 residues renumbered
> changechains #2/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #2/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #2/GM:1
> renumber #2/GM start 172
2 residues renumbered
> changechains #2/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #2/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #2/E8 start 174
86 residues renumbered
> changechains #2/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #2/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #2/N start 34
8 residues renumbered
['1', '5']
> select #2/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #2/GZ start 42
5 residues renumbered
> changechains #2/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #2/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #2/FT start 47
101 residues renumbered
> changechains #2/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #2/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #2/4 start 25
5 residues renumbered
['1', '3']
> select #2/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #2/D start 30
3 residues renumbered
> changechains #2/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #2/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #2/CN start 33
1 residues renumbered
> changechains #2/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #2/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #2/FG start 34
7 residues renumbered
> changechains #2/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #2/GH start 57
14 residues renumbered
> changechains #2/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #2/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #2/GW start 71
5 residues renumbered
> changechains #2/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #2/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #2/Fj start 76
4 residues renumbered
> changechains #2/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #2/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #2/E4 start 80
7 residues renumbered
> changechains #2/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #2/Er start 87
14 residues renumbered
> changechains #2/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #2/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #2/ER start 101
25 residues renumbered
> changechains #2/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #2/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #2/Fz:2
> delete #2/Fz:1
> renumber #2/Fz start 126
18 residues renumbered
> changechains #2/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #2/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #2/p start 144
8 residues renumbered
> changechains #2/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #2/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #2/Dk start 152
1 residues renumbered
> changechains #2/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #2/Bz start 153
2 residues renumbered
> changechains #2/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #2/Br start 155
2 residues renumbered
> changechains #2/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #2/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #2/F6 start 181
18 residues renumbered
> changechains #2/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #2/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #2/q start 200
70 residues renumbered
> changechains #2/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #2/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #2/Aw start 270
2 residues renumbered
> changechains #2/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #2/X start 272
2 residues renumbered
> changechains #2/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #2/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #2/Y start 274
12 residues renumbered
> changechains #2/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #2/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #2/9 start 286
5 residues renumbered
> changechains #2/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #2/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #2/c:1
> renumber #2/c start 291
13 residues renumbered
> changechains #2/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #2/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #2/Ge start 304
3 residues renumbered
> changechains #2/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #2/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #2/Du start 309
2 residues renumbered
> changechains #2/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #2/Ad start 311
3 residues renumbered
> changechains #2/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #2/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #2/t start 314
7 residues renumbered
> changechains #2/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #2/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #2/FU start 321
32 residues renumbered
> changechains #2/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #2/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #2/By start 353
1 residues renumbered
> changechains #2/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #2/AH start 354
2 residues renumbered
> changechains #2/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #2/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #2/GV start 356
24 residues renumbered
> changechains #2/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #2/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #2/Dq start 380
1 residues renumbered
> changechains #2/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #2/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #2/GT start 381
4 residues renumbered
> changechains #2/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #2/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #2/DS start 387
2 residues renumbered
> changechains #2/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #2/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #2/Fp start 389
10 residues renumbered
> changechains #2/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #2/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #2/7 start 399
5 residues renumbered
> changechains #2/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #2/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #2/8 start 404
2 residues renumbered
> changechains #2/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #2/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #2/FJ start 407
20 residues renumbered
> changechains #2/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #2/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #2/Fu:1
> renumber #2/Fu start 427
6 residues renumbered
> changechains #2/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #2/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #2/D6 start 469
1 residues renumbered
> changechains #2/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #2/Dl start 470
2 residues renumbered
> changechains #2/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #2/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #2/DK start 472
1 residues renumbered
> changechains #2/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #2/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #2/Dt start 473
1 residues renumbered
> changechains #2/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #2/C2 start 474
2 residues renumbered
> changechains #2/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #2/GR start 476
3 residues renumbered
> changechains #2/GR 4
Chain IDs of 3 residues changed
['1', '12']
> select #2/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
478
511
>33
> renumber #2/FK start 511
12 residues renumbered
> changechains #2/FK 4
Chain IDs of 12 residues changed
['1', '3']
> select #2/Gb
19 atoms, 18 bonds, 3 residues, 1 model selected
522
524
>2
> renumber #2/Gb start 524
3 residues renumbered
> changechains #2/Gb 4
Chain IDs of 3 residues changed
Renumering chain sp|P14548.2|CYB_LEITA_A
['2', '15']
> select #2/FI
436 atoms, 446 bonds, 53 residues, 1 model selected
0
2
>2
> renumber #2/FI start 2
53 residues renumbered
['1', '1']
> select #2/BA
11 atoms, 11 bonds, 1 residue, 1 model selected
54
55
>1
> renumber #2/BA start 55
1 residues renumbered
> changechains #2/BA FI
Chain IDs of 1 residues changed
['1', '1']
> select #2/B9
5 atoms, 4 bonds, 1 residue, 1 model selected
55
56
>1
> renumber #2/B9 start 56
1 residues renumbered
> changechains #2/B9 FI
Chain IDs of 1 residues changed
['1', '153']
> select #2/Ej
1293 atoms, 1333 bonds, 153 residues, 1 model selected
56
57
>1
> renumber #2/Ej start 57
153 residues renumbered
> changechains #2/Ej FI
Chain IDs of 153 residues changed
['1', '1']
> select #2/AC
12 atoms, 12 bonds, 1 residue, 1 model selected
209
210
>1
> renumber #2/AC start 210
1 residues renumbered
> changechains #2/AC FI
Chain IDs of 1 residues changed
['1', '39']
> select #2/k
358 atoms, 372 bonds, 39 residues, 1 model selected
210
211
>1
> renumber #2/k start 211
39 residues renumbered
> changechains #2/k FI
Chain IDs of 39 residues changed
['1', '27']
> select #2/Fn
200 atoms, 203 bonds, 27 residues, 1 model selected
249
250
>1
> renumber #2/Fn start 250
27 residues renumbered
> changechains #2/Fn FI
Chain IDs of 27 residues changed
['1', '37']
> select #2/o
318 atoms, 331 bonds, 37 residues, 1 model selected
276
276
>0
> delete #2/o:1
> renumber #2/o start 277
36 residues renumbered
> changechains #2/o FI
Chain IDs of 36 residues changed
['1', '2']
> select #2/AE
22 atoms, 23 bonds, 2 residues, 1 model selected
312
313
>1
> renumber #2/AE start 313
2 residues renumbered
> changechains #2/AE FI
Chain IDs of 2 residues changed
['1', '1']
> select #2/C8
7 atoms, 7 bonds, 1 residue, 1 model selected
314
318
>4
> renumber #2/C8 start 318
1 residues renumbered
> changechains #2/C8 FI
Chain IDs of 1 residues changed
['1', '1']
> select #2/Bo
14 atoms, 15 bonds, 1 residue, 1 model selected
318
319
>1
> renumber #2/Bo start 319
1 residues renumbered
> changechains #2/Bo FI
Chain IDs of 1 residues changed
['1', '56']
> select #2/Ep
472 atoms, 486 bonds, 56 residues, 1 model selected
319
320
>1
> renumber #2/Ep start 320
56 residues renumbered
> changechains #2/Ep FI
Chain IDs of 56 residues changed
Renumering chain LtaP35.0210.mRNA_A
['1', '9']
> select #2/GU
72 atoms, 72 bonds, 9 residues, 1 model selected
0
1
>1
> renumber #2/GU start 1
0 residues renumbered
['1', '4']
> select #2/FE
28 atoms, 28 bonds, 4 residues, 1 model selected
9
10
>1
> renumber #2/FE start 10
4 residues renumbered
> changechains #2/FE GU
Chain IDs of 4 residues changed
['1', '2']
> select #2/Az
12 atoms, 11 bonds, 2 residues, 1 model selected
13
14
>1
> renumber #2/Az start 14
2 residues renumbered
> changechains #2/Az GU
Chain IDs of 2 residues changed
['1', '3']
> select #2/J
21 atoms, 20 bonds, 3 residues, 1 model selected
15
16
>1
> renumber #2/J start 16
3 residues renumbered
> changechains #2/J GU
Chain IDs of 3 residues changed
['1', '2']
> select #2/AK
12 atoms, 11 bonds, 2 residues, 1 model selected
18
19
>1
> renumber #2/AK start 19
2 residues renumbered
> changechains #2/AK GU
Chain IDs of 2 residues changed
['1', '10']
> select #2/h
86 atoms, 88 bonds, 10 residues, 1 model selected
20
21
>1
> renumber #2/h start 21
10 residues renumbered
> changechains #2/h GU
Chain IDs of 10 residues changed
['1', '4']
> select #2/i
44 atoms, 46 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/i start 31
4 residues renumbered
> changechains #2/i GU
Chain IDs of 4 residues changed
['1', '1']
> select #2/Cw
8 atoms, 7 bonds, 1 residue, 1 model selected
34
35
>1
> renumber #2/Cw start 35
1 residues renumbered
> changechains #2/Cw GU
Chain IDs of 1 residues changed
['1', '2']
> select #2/As
16 atoms, 16 bonds, 2 residues, 1 model selected
35
36
>1
> renumber #2/As start 36
2 residues renumbered
> changechains #2/As GU
Chain IDs of 2 residues changed
['1', '30']
> select #2/r
242 atoms, 242 bonds, 30 residues, 1 model selected
37
38
>1
> renumber #2/r start 38
30 residues renumbered
> changechains #2/r GU
Chain IDs of 30 residues changed
['3', '45']
> select #2/E5
401 atoms, 418 bonds, 48 residues, 1 model selected
67
68
>1
> renumber #2/E5 start 68
48 residues renumbered
> changechains #2/E5 GU
Chain IDs of 48 residues changed
['1', '9']
> select #2/l
68 atoms, 68 bonds, 9 residues, 1 model selected
115
116
>1
> renumber #2/l start 116
9 residues renumbered
> changechains #2/l GU
Chain IDs of 9 residues changed
['1', '2']
> select #2/BD
11 atoms, 10 bonds, 2 residues, 1 model selected
124
125
>1
> renumber #2/BD start 125
2 residues renumbered
> changechains #2/BD GU
Chain IDs of 2 residues changed
['1', '59']
> select #2/Em
552 atoms, 567 bonds, 65 residues, 1 model selected
126
127
>1
> renumber #2/Em start 127
65 residues renumbered
> changechains #2/Em GU
Chain IDs of 65 residues changed
['1', '13']
> select #2/FW
101 atoms, 104 bonds, 13 residues, 1 model selected
191
191
>0
> delete #2/FW:1
> renumber #2/FW start 192
12 residues renumbered
> changechains #2/FW GU
Chain IDs of 12 residues changed
Renumering chain GET91263.1_A
['1', '34']
> select #2/FL
257 atoms, 261 bonds, 34 residues, 1 model selected
0
4
>4
> renumber #2/FL start 4
34 residues renumbered
['1', '5']
> select #2/FP
31 atoms, 31 bonds, 5 residues, 1 model selected
37
39
>2
> renumber #2/FP start 39
5 residues renumbered
> changechains #2/FP FL
Chain IDs of 5 residues changed
['3', '25']
> select #2/1
220 atoms, 226 bonds, 26 residues, 1 model selected
43
45
>2
> renumber #2/1 start 45
26 residues renumbered
> changechains #2/1 FL
Chain IDs of 26 residues changed
Renumering chain LtaP35.0250.mRNA_A
['1', '4']
> select #2/GA
26 atoms, 27 bonds, 4 residues, 1 model selected
0
13
>13
> renumber #2/GA start 13
4 residues renumbered
['1', '3']
> select #2/a
19 atoms, 18 bonds, 3 residues, 1 model selected
16
17
>1
> renumber #2/a start 17
3 residues renumbered
> changechains #2/a GA
Chain IDs of 3 residues changed
['6', '20']
> select #2/EQ
192 atoms, 194 bonds, 24 residues, 1 model selected
19
20
>1
> renumber #2/EQ start 20
24 residues renumbered
> changechains #2/EQ GA
Chain IDs of 24 residues changed
['1', '11']
> select #2/En
90 atoms, 92 bonds, 11 residues, 1 model selected
43
45
>2
> renumber #2/En start 45
11 residues renumbered
> changechains #2/En GA
Chain IDs of 11 residues changed
['3', '39']
> select #2/m
342 atoms, 353 bonds, 39 residues, 1 model selected
55
57
>2
> renumber #2/m start 57
39 residues renumbered
> changechains #2/m GA
Chain IDs of 39 residues changed
['1', '27']
> select #2/Eo
229 atoms, 235 bonds, 27 residues, 1 model selected
95
96
>1
> renumber #2/Eo start 96
27 residues renumbered
> changechains #2/Eo GA
Chain IDs of 27 residues changed
Renumering chain GET89654.1_A
['1', '21']
> select #2/GQ
149 atoms, 153 bonds, 21 residues, 1 model selected
0
13
>13
> renumber #2/GQ start 13
21 residues renumbered
['1', '1']
> select #2/B2
11 atoms, 11 bonds, 1 residue, 1 model selected
33
34
>1
> renumber #2/B2 start 34
1 residues renumbered
> changechains #2/B2 GQ
Chain IDs of 1 residues changed
['1', '4']
> select #2/AB
32 atoms, 32 bonds, 4 residues, 1 model selected
34
35
>1
> renumber #2/AB start 35
4 residues renumbered
> changechains #2/AB GQ
Chain IDs of 4 residues changed
['2', '33']
> select #2/FM
254 atoms, 256 bonds, 33 residues, 1 model selected
38
39
>1
> renumber #2/FM start 39
33 residues renumbered
> changechains #2/FM GQ
Chain IDs of 33 residues changed
['1', '1']
> select #2/CP
8 atoms, 7 bonds, 1 residue, 1 model selected
71
72
>1
> renumber #2/CP start 72
1 residues renumbered
> changechains #2/CP GQ
Chain IDs of 1 residues changed
['1', '1']
> select #2/BG
4 atoms, 3 bonds, 1 residue, 1 model selected
72
73
>1
> renumber #2/BG start 73
1 residues renumbered
> changechains #2/BG GQ
Chain IDs of 1 residues changed
['1', '2']
> select #2/A8
15 atoms, 15 bonds, 2 residues, 1 model selected
73
74
>1
> renumber #2/A8 start 74
2 residues renumbered
> changechains #2/A8 GQ
Chain IDs of 2 residues changed
['1', '1']
> select #2/B0
4 atoms, 3 bonds, 1 residue, 1 model selected
75
76
>1
> renumber #2/B0 start 76
1 residues renumbered
> changechains #2/B0 GQ
Chain IDs of 1 residues changed
['1', '1']
> select #2/C1
5 atoms, 4 bonds, 1 residue, 1 model selected
76
77
>1
> renumber #2/C1 start 77
1 residues renumbered
> changechains #2/C1 GQ
Chain IDs of 1 residues changed
['1', '8']
> select #2/GN
58 atoms, 58 bonds, 8 residues, 1 model selected
77
78
>1
> renumber #2/GN start 78
8 residues renumbered
> changechains #2/GN GQ
Chain IDs of 8 residues changed
> delete #2/FN:35
> renumber #2/FN:36-69 start 45
34 residues renumbered
> renumber #2/FN start 45
68 residues renumbered
> delete #2/FN:505
> delete #2/FN:508
> renumber #2/FN:479-512 start 479 relative false
No residues specified
> changechains #2/FN 4
Proposed chainID change conflicts with existing residue
renamedAndRenumberedModel #2/4 CYS 101
> select #2/FN
518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected
> select #2/FN
518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected
> select #2/FN
518 atoms, 525 bonds, 1 pseudobond, 68 residues, 2 models selected
> view #2/FN
> hide #1 models
> show #1 models
> hide #!2 models
> show #!2 models
> hide #1 models
> close #2
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
Renumering chain LtaP35.1590.mRNA_A
['1', '8']
> select #2/GC
66 atoms, 66 bonds, 8 residues, 1 model selected
0
17
>17
> renumber #2/GC start 17
8 residues renumbered
['1', '1']
> select #2/Bd
4 atoms, 3 bonds, 1 residue, 1 model selected
24
25
>1
> renumber #2/Bd start 25
1 residues renumbered
> changechains #2/Bd GC
Chain IDs of 1 residues changed
['1', '1']
> select #2/Ca
4 atoms, 3 bonds, 1 residue, 1 model selected
25
26
>1
> renumber #2/Ca start 26
1 residues renumbered
> changechains #2/Ca GC
Chain IDs of 1 residues changed
['1', '3']
> select #2/AP
19 atoms, 19 bonds, 3 residues, 1 model selected
26
27
>1
> renumber #2/AP start 27
3 residues renumbered
> changechains #2/AP GC
Chain IDs of 3 residues changed
['1', '1']
> select #2/BN
6 atoms, 5 bonds, 1 residue, 1 model selected
29
30
>1
> renumber #2/BN start 30
1 residues renumbered
> changechains #2/BN GC
Chain IDs of 1 residues changed
['1', '4']
> select #2/FF
32 atoms, 32 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/FF start 31
4 residues renumbered
> changechains #2/FF GC
Chain IDs of 4 residues changed
['1', '15']
> select #2/Fo
103 atoms, 106 bonds, 15 residues, 1 model selected
34
35
>1
> renumber #2/Fo start 35
15 residues renumbered
> changechains #2/Fo GC
Chain IDs of 15 residues changed
['1', '1']
> select #2/Cy
8 atoms, 7 bonds, 1 residue, 1 model selected
49
50
>1
> renumber #2/Cy start 50
1 residues renumbered
> changechains #2/Cy GC
Chain IDs of 1 residues changed
['1', '9']
> select #2/EY
66 atoms, 67 bonds, 9 residues, 1 model selected
50
51
>1
> renumber #2/EY start 51
9 residues renumbered
> changechains #2/EY GC
Chain IDs of 9 residues changed
['1', '4']
> select #2/FV
24 atoms, 23 bonds, 4 residues, 1 model selected
59
60
>1
> renumber #2/FV start 60
4 residues renumbered
> changechains #2/FV GC
Chain IDs of 4 residues changed
['1', '28']
> select #2/Ey
210 atoms, 213 bonds, 28 residues, 1 model selected
63
64
>1
> renumber #2/Ey start 64
28 residues renumbered
> changechains #2/Ey GC
Chain IDs of 28 residues changed
['1', '15']
> select #2/K
102 atoms, 102 bonds, 15 residues, 1 model selected
91
92
>1
> renumber #2/K start 92
15 residues renumbered
> changechains #2/K GC
Chain IDs of 15 residues changed
['7', '15']
> select #2/L
184 atoms, 187 bonds, 22 residues, 1 model selected
106
107
>1
> renumber #2/L start 107
22 residues renumbered
> changechains #2/L GC
Chain IDs of 22 residues changed
['2', '44']
> select #2/Ee
355 atoms, 363 bonds, 44 residues, 1 model selected
128
129
>1
> renumber #2/Ee start 129
44 residues renumbered
> changechains #2/Ee GC
Chain IDs of 44 residues changed
Renumering chain LtaP35.1450.mRNA_A
['1', '7']
> select #2/Gc
52 atoms, 52 bonds, 7 residues, 1 model selected
0
2
>2
> renumber #2/Gc start 2
7 residues renumbered
['1', '8']
> select #2/Ex
55 atoms, 56 bonds, 8 residues, 1 model selected
8
10
>2
> renumber #2/Ex start 10
8 residues renumbered
> changechains #2/Ex Gc
Chain IDs of 8 residues changed
['1', '13']
> select #2/E6
98 atoms, 100 bonds, 13 residues, 1 model selected
17
18
>1
> renumber #2/E6 start 18
13 residues renumbered
> changechains #2/E6 Gc
Chain IDs of 13 residues changed
['1', '1']
> select #2/Ai
11 atoms, 10 bonds, 1 residue, 1 model selected
30
31
>1
> renumber #2/Ai start 31
1 residues renumbered
> changechains #2/Ai Gc
Chain IDs of 1 residues changed
['1', '31']
> select #2/0
233 atoms, 235 bonds, 31 residues, 1 model selected
31
32
>1
> renumber #2/0 start 32
31 residues renumbered
> changechains #2/0 Gc
Chain IDs of 31 residues changed
['1', '2']
> select #2/U
11 atoms, 10 bonds, 2 residues, 1 model selected
62
63
>1
> renumber #2/U start 63
2 residues renumbered
> changechains #2/U Gc
Chain IDs of 2 residues changed
['6', '22']
> select #2/d
176 atoms, 182 bonds, 22 residues, 1 model selected
64
65
>1
> renumber #2/d start 65
22 residues renumbered
> changechains #2/d Gc
Chain IDs of 22 residues changed
['5', '21']
> select #2/EV
161 atoms, 160 bonds, 21 residues, 1 model selected
86
87
>1
> renumber #2/EV start 87
21 residues renumbered
> changechains #2/EV Gc
Chain IDs of 21 residues changed
> delete #2/Ew:132
> renumber #2/Ew:133-9999999 start 132
11 residues renumbered
['3', '139']
> select #2/Ew
1060 atoms, 1072 bonds, 1 pseudobond, 142 residues, 2 models selected
107
108
>1
> renumber #2/Ew start 108
142 residues renumbered
> changechains #2/Ew Gc
Chain IDs of 142 residues changed
['1', '3']
> select #2/GO
18 atoms, 18 bonds, 3 residues, 1 model selected
249
250
>1
> renumber #2/GO start 250
3 residues renumbered
> changechains #2/GO Gc
Chain IDs of 3 residues changed
['1', '8']
> select #2/Z
69 atoms, 71 bonds, 8 residues, 1 model selected
252
253
>1
> renumber #2/Z start 253
8 residues renumbered
> changechains #2/Z Gc
Chain IDs of 8 residues changed
['2', '18']
> select #2/ES
163 atoms, 164 bonds, 18 residues, 1 model selected
260
262
>2
> renumber #2/ES start 262
18 residues renumbered
> changechains #2/ES Gc
Chain IDs of 18 residues changed
['1', '7']
> select #2/Fc
40 atoms, 41 bonds, 7 residues, 1 model selected
279
282
>3
> renumber #2/Fc start 282
7 residues renumbered
> changechains #2/Fc Gc
Chain IDs of 7 residues changed
['7', '12']
> select #2/Fa
177 atoms, 179 bonds, 24 residues, 1 model selected
288
289
>1
> renumber #2/Fa start 289
24 residues renumbered
> changechains #2/Fa Gc
Chain IDs of 24 residues changed
['1', '10']
> select #2/2
81 atoms, 83 bonds, 10 residues, 1 model selected
312
314
>2
> renumber #2/2 start 314
10 residues renumbered
> changechains #2/2 Gc
Chain IDs of 10 residues changed
['1', '2']
> select #2/E
16 atoms, 16 bonds, 2 residues, 1 model selected
323
326
>3
> renumber #2/E start 326
2 residues renumbered
> changechains #2/E Gc
Chain IDs of 2 residues changed
['1', '10']
> select #2/Ff
75 atoms, 76 bonds, 10 residues, 1 model selected
327
328
>1
> renumber #2/Ff start 328
10 residues renumbered
> changechains #2/Ff Gc
Chain IDs of 10 residues changed
['4', '63']
> select #2/E2
1095 atoms, 1118 bonds, 132 residues, 1 model selected
337
338
>1
> renumber #2/E2 start 338
132 residues renumbered
> changechains #2/E2 Gc
Chain IDs of 132 residues changed
['9', '11']
> select #2/W
182 atoms, 189 bonds, 20 residues, 1 model selected
469
470
>1
> renumber #2/W start 470
20 residues renumbered
> changechains #2/W Gc
Chain IDs of 20 residues changed
['1', '1']
> select #2/BM
7 atoms, 6 bonds, 1 residue, 1 model selected
489
490
>1
> renumber #2/BM start 490
1 residues renumbered
> changechains #2/BM Gc
Chain IDs of 1 residues changed
Renumering chain LtaP07.0060.mRNA_A
['1', '5']
> select #2/A
32 atoms, 33 bonds, 5 residues, 1 model selected
0
5
>5
> renumber #2/A start 5
5 residues renumbered
['5', '33']
> select #2/Fd
314 atoms, 324 bonds, 36 residues, 1 model selected
9
10
>1
> renumber #2/Fd start 10
36 residues renumbered
> changechains #2/Fd A
Chain IDs of 36 residues changed
['1', '4']
> select #2/Ef
24 atoms, 23 bonds, 4 residues, 1 model selected
45
46
>1
> renumber #2/Ef start 46
4 residues renumbered
> changechains #2/Ef A
Chain IDs of 4 residues changed
['1', '74']
> select #2/Eg
577 atoms, 589 bonds, 74 residues, 1 model selected
49
50
>1
> renumber #2/Eg start 50
74 residues renumbered
> changechains #2/Eg A
Chain IDs of 74 residues changed
['3', '18']
> select #2/j
160 atoms, 162 bonds, 22 residues, 1 model selected
123
124
>1
> renumber #2/j start 124
22 residues renumbered
> changechains #2/j A
Chain IDs of 22 residues changed
> renumber #2/Ei:7-9999999 start 8
19 residues renumbered
> ~bond #2/Ei:6@C #2/Ei:8@N
['2', '21']
> select #2/Ei
187 atoms, 195 bonds, 1 pseudobond, 25 residues, 2 models selected
145
145
>0
> delete #2/Ei:1
> renumber #2/Ei start 146
24 residues renumbered
> changechains #2/Ei A
Chain IDs of 24 residues changed
['1', '4']
> select #2/Bi
23 atoms, 22 bonds, 4 residues, 1 model selected
170
168
>-2
> delete #2/Bi:3
> delete #2/Bi:2
> delete #2/Bi:1
> renumber #2/Bi start 171
1 residues renumbered
> changechains #2/Bi A
Chain IDs of 1 residues changed
['1', '3']
> select #2/GM
21 atoms, 20 bonds, 3 residues, 1 model selected
171
171
>0
> delete #2/GM:1
> renumber #2/GM start 172
2 residues renumbered
> changechains #2/GM A
Chain IDs of 2 residues changed
['2', '81']
> select #2/E8
695 atoms, 717 bonds, 86 residues, 1 model selected
173
174
>1
> renumber #2/E8 start 174
86 residues renumbered
> changechains #2/E8 A
Chain IDs of 86 residues changed
Renumering chain LtaP32.3800.mRNA_A
['1', '8']
> select #2/N
66 atoms, 69 bonds, 8 residues, 1 model selected
0
34
>34
> renumber #2/N start 34
8 residues renumbered
['1', '5']
> select #2/GZ
35 atoms, 34 bonds, 5 residues, 1 model selected
41
42
>1
> renumber #2/GZ start 42
5 residues renumbered
> changechains #2/GZ N
Chain IDs of 5 residues changed
['14', '47']
> select #2/FT
810 atoms, 833 bonds, 101 residues, 1 model selected
46
47
>1
> renumber #2/FT start 47
101 residues renumbered
> changechains #2/FT N
Chain IDs of 101 residues changed
Renumering chain LtaP13.0770.mRNA_A
['1', '5']
> select #2/4
50 atoms, 51 bonds, 5 residues, 1 model selected
0
25
>25
> renumber #2/4 start 25
5 residues renumbered
['1', '3']
> select #2/D
20 atoms, 20 bonds, 3 residues, 1 model selected
29
30
>1
> renumber #2/D start 30
3 residues renumbered
> changechains #2/D 4
Chain IDs of 3 residues changed
['1', '1']
> select #2/CN
6 atoms, 5 bonds, 1 residue, 1 model selected
32
33
>1
> renumber #2/CN start 33
1 residues renumbered
> changechains #2/CN 4
Chain IDs of 1 residues changed
['1', '7']
> select #2/FG
48 atoms, 48 bonds, 7 residues, 1 model selected
33
34
>1
> renumber #2/FG start 34
7 residues renumbered
> changechains #2/FG 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/GH
92 atoms, 92 bonds, 14 residues, 1 model selected
40
57
>17
> renumber #2/GH start 57
14 residues renumbered
> changechains #2/GH 4
Chain IDs of 14 residues changed
['1', '5']
> select #2/GW
46 atoms, 46 bonds, 5 residues, 1 model selected
70
71
>1
> renumber #2/GW start 71
5 residues renumbered
> changechains #2/GW 4
Chain IDs of 5 residues changed
['1', '4']
> select #2/Fj
24 atoms, 23 bonds, 4 residues, 1 model selected
75
76
>1
> renumber #2/Fj start 76
4 residues renumbered
> changechains #2/Fj 4
Chain IDs of 4 residues changed
['1', '7']
> select #2/E4
48 atoms, 48 bonds, 7 residues, 1 model selected
79
80
>1
> renumber #2/E4 start 80
7 residues renumbered
> changechains #2/E4 4
Chain IDs of 7 residues changed
['1', '14']
> select #2/Er
99 atoms, 102 bonds, 14 residues, 1 model selected
86
87
>1
> renumber #2/Er start 87
14 residues renumbered
> changechains #2/Er 4
Chain IDs of 14 residues changed
['1', '25']
> select #2/ER
208 atoms, 211 bonds, 25 residues, 1 model selected
100
101
>1
> renumber #2/ER start 101
25 residues renumbered
> changechains #2/ER 4
Chain IDs of 25 residues changed
['1', '20']
> select #2/Fz
146 atoms, 147 bonds, 20 residues, 1 model selected
125
124
>-1
> delete #2/Fz:2
> delete #2/Fz:1
> renumber #2/Fz start 126
18 residues renumbered
> changechains #2/Fz 4
Chain IDs of 18 residues changed
['1', '8']
> select #2/p
62 atoms, 62 bonds, 8 residues, 1 model selected
143
144
>1
> renumber #2/p start 144
8 residues renumbered
> changechains #2/p 4
Chain IDs of 8 residues changed
['1', '1']
> select #2/Dk
8 atoms, 7 bonds, 1 residue, 1 model selected
151
152
>1
> renumber #2/Dk start 152
1 residues renumbered
> changechains #2/Dk 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Bz
16 atoms, 15 bonds, 2 residues, 1 model selected
152
153
>1
> renumber #2/Bz start 153
2 residues renumbered
> changechains #2/Bz 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/Br
11 atoms, 10 bonds, 2 residues, 1 model selected
154
155
>1
> renumber #2/Br start 155
2 residues renumbered
> changechains #2/Br 4
Chain IDs of 2 residues changed
['1', '18']
> select #2/F6
144 atoms, 146 bonds, 18 residues, 1 model selected
156
181
>25
> renumber #2/F6 start 181
18 residues renumbered
> changechains #2/F6 4
Chain IDs of 18 residues changed
['1', '70']
> select #2/q
576 atoms, 590 bonds, 70 residues, 1 model selected
198
200
>2
> renumber #2/q start 200
70 residues renumbered
> changechains #2/q 4
Chain IDs of 70 residues changed
['1', '2']
> select #2/Aw
14 atoms, 13 bonds, 2 residues, 1 model selected
269
270
>1
> renumber #2/Aw start 270
2 residues renumbered
> changechains #2/Aw 4
Chain IDs of 2 residues changed
['1', '2']
> select #2/X
12 atoms, 11 bonds, 2 residues, 1 model selected
271
272
>1
> renumber #2/X start 272
2 residues renumbered
> changechains #2/X 4
Chain IDs of 2 residues changed
['1', '12']
> select #2/Y
92 atoms, 95 bonds, 12 residues, 1 model selected
273
274
>1
> renumber #2/Y start 274
12 residues renumbered
> changechains #2/Y 4
Chain IDs of 12 residues changed
['1', '5']
> select #2/9
41 atoms, 42 bonds, 5 residues, 1 model selected
285
286
>1
> renumber #2/9 start 286
5 residues renumbered
> changechains #2/9 4
Chain IDs of 5 residues changed
['1', '14']
> select #2/c
112 atoms, 116 bonds, 14 residues, 1 model selected
290
290
>0
> delete #2/c:1
> renumber #2/c start 291
13 residues renumbered
> changechains #2/c 4
Chain IDs of 13 residues changed
['1', '3']
> select #2/Ge
15 atoms, 14 bonds, 3 residues, 1 model selected
303
304
>1
> renumber #2/Ge start 304
3 residues renumbered
> changechains #2/Ge 4
Chain IDs of 3 residues changed
['1', '2']
> select #2/Du
13 atoms, 12 bonds, 2 residues, 1 model selected
306
309
>3
> renumber #2/Du start 309
2 residues renumbered
> changechains #2/Du 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/Ad
18 atoms, 18 bonds, 3 residues, 1 model selected
310
311
>1
> renumber #2/Ad start 311
3 residues renumbered
> changechains #2/Ad 4
Chain IDs of 3 residues changed
['1', '7']
> select #2/t
50 atoms, 50 bonds, 7 residues, 1 model selected
313
314
>1
> renumber #2/t start 314
7 residues renumbered
> changechains #2/t 4
Chain IDs of 7 residues changed
['1', '32']
> select #2/FU
251 atoms, 254 bonds, 32 residues, 1 model selected
320
321
>1
> renumber #2/FU start 321
32 residues renumbered
> changechains #2/FU 4
Chain IDs of 32 residues changed
['1', '1']
> select #2/By
11 atoms, 10 bonds, 1 residue, 1 model selected
352
353
>1
> renumber #2/By start 353
1 residues renumbered
> changechains #2/By 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/AH
13 atoms, 12 bonds, 2 residues, 1 model selected
353
354
>1
> renumber #2/AH start 354
2 residues renumbered
> changechains #2/AH 4
Chain IDs of 2 residues changed
['9', '18']
> select #2/GV
182 atoms, 182 bonds, 24 residues, 1 model selected
355
356
>1
> renumber #2/GV start 356
24 residues renumbered
> changechains #2/GV 4
Chain IDs of 24 residues changed
['1', '1']
> select #2/Dq
4 atoms, 3 bonds, 1 residue, 1 model selected
379
380
>1
> renumber #2/Dq start 380
1 residues renumbered
> changechains #2/Dq 4
Chain IDs of 1 residues changed
['1', '4']
> select #2/GT
28 atoms, 27 bonds, 4 residues, 1 model selected
380
381
>1
> renumber #2/GT start 381
4 residues renumbered
> changechains #2/GT 4
Chain IDs of 4 residues changed
['1', '2']
> select #2/DS
15 atoms, 15 bonds, 2 residues, 1 model selected
384
387
>3
> renumber #2/DS start 387
2 residues renumbered
> changechains #2/DS 4
Chain IDs of 2 residues changed
['1', '10']
> select #2/Fp
76 atoms, 78 bonds, 10 residues, 1 model selected
388
389
>1
> renumber #2/Fp start 389
10 residues renumbered
> changechains #2/Fp 4
Chain IDs of 10 residues changed
['1', '5']
> select #2/7
37 atoms, 37 bonds, 5 residues, 1 model selected
398
399
>1
> renumber #2/7 start 399
5 residues renumbered
> changechains #2/7 4
Chain IDs of 5 residues changed
['1', '2']
> select #2/8
16 atoms, 15 bonds, 2 residues, 1 model selected
403
404
>1
> renumber #2/8 start 404
2 residues renumbered
> changechains #2/8 4
Chain IDs of 2 residues changed
['1', '20']
> select #2/FJ
149 atoms, 150 bonds, 20 residues, 1 model selected
405
407
>2
> renumber #2/FJ start 407
20 residues renumbered
> changechains #2/FJ 4
Chain IDs of 20 residues changed
['1', '7']
> select #2/Fu
53 atoms, 53 bonds, 7 residues, 1 model selected
426
426
>0
> delete #2/Fu:1
> renumber #2/Fu start 427
6 residues renumbered
> changechains #2/Fu 4
Chain IDs of 6 residues changed
['1', '1']
> select #2/D6
8 atoms, 7 bonds, 1 residue, 1 model selected
432
469
>37
> renumber #2/D6 start 469
1 residues renumbered
> changechains #2/D6 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/Dl
8 atoms, 7 bonds, 2 residues, 1 model selected
469
470
>1
> renumber #2/Dl start 470
2 residues renumbered
> changechains #2/Dl 4
Chain IDs of 2 residues changed
['1', '1']
> select #2/DK
9 atoms, 8 bonds, 1 residue, 1 model selected
471
472
>1
> renumber #2/DK start 472
1 residues renumbered
> changechains #2/DK 4
Chain IDs of 1 residues changed
['1', '1']
> select #2/Dt
9 atoms, 8 bonds, 1 residue, 1 model selected
472
473
>1
> renumber #2/Dt start 473
1 residues renumbered
> changechains #2/Dt 4
Chain IDs of 1 residues changed
['1', '2']
> select #2/C2
10 atoms, 9 bonds, 2 residues, 1 model selected
473
474
>1
> renumber #2/C2 start 474
2 residues renumbered
> changechains #2/C2 4
Chain IDs of 2 residues changed
['1', '3']
> select #2/GR
19 atoms, 18 bonds, 3 residues, 1 model selected
475
476
>1
> renumber #2/GR start 476
3 residues renumbered
> changechains #2/GR 4
Chain IDs of 3 residues changed
['1', '12']
> select #2/FK
87 atoms, 88 bonds, 12 residues, 1 model selected
478
511
>33
> renumber #2/FK start 511
12 residues renumbered
> changechains #2/FK 4
Chain IDs of 12 residues changed
['1', '3']
> select #2/Gb
19 atoms, 18 bonds, 3 residues, 1 model selected
522
524
>2
> renumber #2/Gb start 524
3 residues renumbered
> changechains #2/Gb 4
Chain IDs of 3 residues changed
Renumering chain sp|P14548.2|CYB_LEITA_A
['2', '15']
> select #2/FI
436 atoms, 446 bonds, 53 residues, 1 model selected
0
2
>2
> renumber #2/FI start 2
53 residues renumbered
['1', '1']
> select #2/BA
11 atoms, 11 bonds, 1 residue, 1 model selected
54
55
>1
> renumber #2/BA start 55
1 residues renumbered
> changechains #2/BA FI
Chain IDs of 1 residues changed
['1', '1']
> select #2/B9
5 atoms, 4 bonds, 1 residue, 1 model selected
55
56
>1
> renumber #2/B9 start 56
1 residues renumbered
> changechains #2/B9 FI
Chain IDs of 1 residues changed
['1', '153']
> select #2/Ej
1293 atoms, 1333 bonds, 153 residues, 1 model selected
56
57
>1
> renumber #2/Ej start 57
153 residues renumbered
> changechains #2/Ej FI
Chain IDs of 153 residues changed
['1', '1']
> select #2/AC
12 atoms, 12 bonds, 1 residue, 1 model selected
209
210
>1
> renumber #2/AC start 210
1 residues renumbered
> changechains #2/AC FI
Chain IDs of 1 residues changed
['1', '39']
> select #2/k
358 atoms, 372 bonds, 39 residues, 1 model selected
210
211
>1
> renumber #2/k start 211
39 residues renumbered
> changechains #2/k FI
Chain IDs of 39 residues changed
['1', '27']
> select #2/Fn
200 atoms, 203 bonds, 27 residues, 1 model selected
249
250
>1
> renumber #2/Fn start 250
27 residues renumbered
> changechains #2/Fn FI
Chain IDs of 27 residues changed
['1', '37']
> select #2/o
318 atoms, 331 bonds, 37 residues, 1 model selected
276
276
>0
> delete #2/o:1
> renumber #2/o start 277
36 residues renumbered
> changechains #2/o FI
Chain IDs of 36 residues changed
['1', '2']
> select #2/AE
22 atoms, 23 bonds, 2 residues, 1 model selected
312
313
>1
> renumber #2/AE start 313
2 residues renumbered
> changechains #2/AE FI
Chain IDs of 2 residues changed
['1', '1']
> select #2/C8
7 atoms, 7 bonds, 1 residue, 1 model selected
314
318
>4
> renumber #2/C8 start 318
1 residues renumbered
> changechains #2/C8 FI
Chain IDs of 1 residues changed
['1', '1']
> select #2/Bo
14 atoms, 15 bonds, 1 residue, 1 model selected
318
319
>1
> renumber #2/Bo start 319
1 residues renumbered
> changechains #2/Bo FI
Chain IDs of 1 residues changed
['1', '56']
> select #2/Ep
472 atoms, 486 bonds, 56 residues, 1 model selected
319
320
>1
> renumber #2/Ep start 320
56 residues renumbered
> changechains #2/Ep FI
Chain IDs of 56 residues changed
Renumering chain LtaP35.0210.mRNA_A
['1', '9']
> select #2/GU
72 atoms, 72 bonds, 9 residues, 1 model selected
0
1
>1
> renumber #2/GU start 1
0 residues renumbered
['1', '4']
> select #2/FE
28 atoms, 28 bonds, 4 residues, 1 model selected
9
10
>1
> renumber #2/FE start 10
4 residues renumbered
> changechains #2/FE GU
Chain IDs of 4 residues changed
['1', '2']
> select #2/Az
12 atoms, 11 bonds, 2 residues, 1 model selected
13
14
>1
> renumber #2/Az start 14
2 residues renumbered
> changechains #2/Az GU
Chain IDs of 2 residues changed
['1', '3']
> select #2/J
21 atoms, 20 bonds, 3 residues, 1 model selected
15
16
>1
> renumber #2/J start 16
3 residues renumbered
> changechains #2/J GU
Chain IDs of 3 residues changed
['1', '2']
> select #2/AK
12 atoms, 11 bonds, 2 residues, 1 model selected
18
19
>1
> renumber #2/AK start 19
2 residues renumbered
> changechains #2/AK GU
Chain IDs of 2 residues changed
['1', '10']
> select #2/h
86 atoms, 88 bonds, 10 residues, 1 model selected
20
21
>1
> renumber #2/h start 21
10 residues renumbered
> changechains #2/h GU
Chain IDs of 10 residues changed
['1', '4']
> select #2/i
44 atoms, 46 bonds, 4 residues, 1 model selected
30
31
>1
> renumber #2/i start 31
4 residues renumbered
> changechains #2/i GU
Chain IDs of 4 residues changed
['1', '1']
> select #2/Cw
8 atoms, 7 bonds, 1 residue, 1 model selected
34
35
>1
> renumber #2/Cw start 35
1 residues renumbered
> changechains #2/Cw GU
Chain IDs of 1 residues changed
['1', '2']
> select #2/As
16 atoms, 16 bonds, 2 residues, 1 model selected
35
36
>1
> renumber #2/As start 36
2 residues renumbered
> changechains #2/As GU
Chain IDs of 2 residues changed
['1', '30']
> select #2/r
242 atoms, 242 bonds, 30 residues, 1 model selected
37
38
>1
> renumber #2/r start 38
30 residues renumbered
> changechains #2/r GU
Chain IDs of 30 residues changed
['3', '45']
> select #2/E5
401 atoms, 418 bonds, 48 residues, 1 model selected
67
68
>1
> renumber #2/E5 start 68
48 residues renumbered
> changechains #2/E5 GU
Chain IDs of 48 residues changed
['1', '9']
> select #2/l
68 atoms, 68 bonds, 9 residues, 1 model selected
115
116
>1
> renumber #2/l start 116
9 residues renumbered
> changechains #2/l GU
Chain IDs of 9 residues changed
['1', '2']
> select #2/BD
11 atoms, 10 bonds, 2 residues, 1 model selected
124
125
>1
> renumber #2/BD start 125
2 residues renumbered
> changechains #2/BD GU
Chain IDs of 2 residues changed
['1', '59']
> select #2/Em
552 atoms, 567 bonds, 65 residues, 1 model selected
126
127
>1
> renumber #2/Em start 127
65 residues renumbered
> changechains #2/Em GU
Chain IDs of 65 residues changed
['1', '13']
> select #2/FW
101 atoms, 104 bonds, 13 residues, 1 model selected
191
191
>0
> delete #2/FW:1
> renumber #2/FW start 192
12 residues renumbered
> changechains #2/FW GU
Chain IDs of 12 residues changed
Renumering chain GET91263.1_A
['1', '34']
> select #2/FL
257 atoms, 261 bonds, 34 residues, 1 model selected
0
4
>4
> renumber #2/FL start 4
34 residues renumbered
['1', '5']
> select #2/FP
31 atoms, 31 bonds, 5 residues, 1 model selected
37
39
>2
> renumber #2/FP start 39
5 residues renumbered
> changechains #2/FP FL
Chain IDs of 5 residues changed
['3', '25']
> select #2/1
220 atoms, 226 bonds, 26 residues, 1 model selected
43
45
>2
> renumber #2/1 start 45
26 residues renumbered
> changechains #2/1 FL
Chain IDs of 26 residues changed
Renumering chain LtaP35.0250.mRNA_A
['1', '4']
> select #2/GA
26 atoms, 27 bonds, 4 residues, 1 model selected
0
13
>13
> renumber #2/GA start 13
4 residues renumbered
['1', '3']
> select #2/a
19 atoms, 18 bonds, 3 residues, 1 model selected
16
17
>1
> renumber #2/a start 17
3 residues renumbered
> changechains #2/a GA
Chain IDs of 3 residues changed
['6', '20']
> select #2/EQ
192 atoms, 194 bonds, 24 residues, 1 model selected
19
20
>1
> renumber #2/EQ start 20
24 residues renumbered
> changechains #2/EQ GA
Chain IDs of 24 residues changed
['1', '11']
> select #2/En
90 atoms, 92 bonds, 11 residues, 1 model selected
43
45
>2
> renumber #2/En start 45
11 residues renumbered
> changechains #2/En GA
Chain IDs of 11 residues changed
['3', '39']
> select #2/m
342 atoms, 353 bonds, 39 residues, 1 model selected
55
57
>2
> renumber #2/m start 57
39 residues renumbered
> changechains #2/m GA
Chain IDs of 39 residues changed
['1', '27']
> select #2/Eo
229 atoms, 235 bonds, 27 residues, 1 model selected
95
96
>1
> renumber #2/Eo start 96
27 residues renumbered
> changechains #2/Eo GA
Chain IDs of 27 residues changed
Renumering chain GET89654.1_A
['1', '21']
> select #2/GQ
149 atoms, 153 bonds, 21 residues, 1 model selected
0
13
>13
> renumber #2/GQ start 13
21 residues renumbered
['1', '1']
> select #2/B2
11 atoms, 11 bonds, 1 residue, 1 model selected
33
34
>1
> renumber #2/B2 start 34
1 residues renumbered
> changechains #2/B2 GQ
Chain IDs of 1 residues changed
['1', '4']
> select #2/AB
32 atoms, 32 bonds, 4 residues, 1 model selected
34
35
>1
> renumber #2/AB start 35
4 residues renumbered
> changechains #2/AB GQ
Chain IDs of 4 residues changed
['2', '33']
> select #2/FM
254 atoms, 256 bonds, 33 residues, 1 model selected
38
39
>1
> renumber #2/FM start 39
33 residues renumbered
> changechains #2/FM GQ
Chain IDs of 33 residues changed
['1', '1']
> select #2/CP
8 atoms, 7 bonds, 1 residue, 1 model selected
71
72
>1
> renumber #2/CP start 72
1 residues renumbered
> changechains #2/CP GQ
Chain IDs of 1 residues changed
['1', '1']
> select #2/BG
4 atoms, 3 bonds, 1 residue, 1 model selected
72
73
>1
> renumber #2/BG start 73
1 residues renumbered
> changechains #2/BG GQ
Chain IDs of 1 residues changed
['1', '2']
> select #2/A8
15 atoms, 15 bonds, 2 residues, 1 model selected
73
74
>1
> renumber #2/A8 start 74
2 residues renumbered
> changechains #2/A8 GQ
Chain IDs of 2 residues changed
['1', '1']
> select #2/B0
4 atoms, 3 bonds, 1 residue, 1 model selected
75
76
>1
> renumber #2/B0 start 76
1 residues renumbered
> changechains #2/B0 GQ
Chain IDs of 1 residues changed
['1', '1']
> select #2/C1
5 atoms, 4 bonds, 1 residue, 1 model selected
76
77
>1
> renumber #2/C1 start 77
1 residues renumbered
> changechains #2/C1 GQ
Chain IDs of 1 residues changed
['1', '8']
> select #2/GN
58 atoms, 58 bonds, 8 residues, 1 model selected
77
78
>1
> renumber #2/GN start 78
8 residues renumbered
> changechains #2/GN GQ
Chain IDs of 8 residues changed
> delete #2/FN:35
> renumber #2/FN:36-69 start 45
34 residues renumbered
> renumber #2/FN start 435
68 residues renumbered
> delete #2/FN:505
> delete #2/FN:508
> renumber #2/FN:479-512 start 479 relative false
6 residues renumbered
> changechains #2/FN 4
Chain IDs of 66 residues changed
> save "/Users/rafaelrocha/Library/CloudStorage/GoogleDrive-
> rafael.eduardo.oliveira.rocha@gmail.com/Other computers/My
> Computer/supercomplex/complexIIIdimer/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ/cryosparc_P31_J245_map_sharp_Zflipped_NOSEQ_renamedRenumbered.cif"
> models #2
Not saving entity_poly_seq for non-authoritative sequences
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/mutateForMultipleChains.py #2
> alignmentsMod1Mod.txt
> combine #2 close false name mutadedModel
> color #3 gray
> select #3/GC
1183 atoms, 1196 bonds, 156 residues, 1 model selected
> bond #3/GC:92@C #3/GC:93@N reasonable false
Created 0 bonds
> bond #3/GC:93@C #3/GC:94@N reasonable false
Created 0 bonds
> bond #3/GC:94@C #3/GC:95@N reasonable false
Created 0 bonds
> bond #3/GC:95@C #3/GC:96@N reasonable false
Created 0 bonds
> bond #3/GC:96@C #3/GC:97@N reasonable false
Created 0 bonds
> bond #3/GC:97@C #3/GC:98@N reasonable false
Created 0 bonds
> bond #3/GC:98@C #3/GC:99@N reasonable false
Created 0 bonds
> bond #3/GC:99@C #3/GC:100@N reasonable false
Created 0 bonds
> bond #3/GC:100@C #3/GC:101@N reasonable false
Created 0 bonds
> bond #3/GC:101@C #3/GC:102@N reasonable false
Created 0 bonds
> bond #3/GC:102@C #3/GC:103@N reasonable false
Created 0 bonds
> bond #3/GC:103@C #3/GC:104@N reasonable false
Created 0 bonds
> bond #3/GC:104@C #3/GC:105@N reasonable false
Created 0 bonds
> bond #3/GC:105@C #3/GC:106@N reasonable false
Created 0 bonds
> bond #3/GC:106@C #3/GC:107@N reasonable false
Created 1 bond
> bond #3/GC:107@C #3/GC:108@N reasonable false
Created 0 bonds
> bond #3/GC:108@C #3/GC:109@N reasonable false
Created 0 bonds
> bond #3/GC:109@C #3/GC:110@N reasonable false
Created 0 bonds
> bond #3/GC:110@C #3/GC:111@N reasonable false
Created 0 bonds
> bond #3/GC:111@C #3/GC:112@N reasonable false
Created 0 bonds
> bond #3/GC:112@C #3/GC:113@N reasonable false
Created 0 bonds
> bond #3/GC:113@C #3/GC:114@N reasonable false
Created 0 bonds
> bond #3/GC:114@C #3/GC:115@N reasonable false
Created 0 bonds
> bond #3/GC:115@C #3/GC:116@N reasonable false
Created 0 bonds
> bond #3/GC:116@C #3/GC:117@N reasonable false
Created 0 bonds
> bond #3/GC:117@C #3/GC:118@N reasonable false
Created 0 bonds
> bond #3/GC:118@C #3/GC:119@N reasonable false
Created 0 bonds
> bond #3/GC:119@C #3/GC:120@N reasonable false
Created 0 bonds
> bond #3/GC:120@C #3/GC:121@N reasonable false
Created 0 bonds
> bond #3/GC:121@C #3/GC:122@N reasonable false
Created 0 bonds
> bond #3/GC:122@C #3/GC:123@N reasonable false
Created 0 bonds
> bond #3/GC:123@C #3/GC:124@N reasonable false
Created 0 bonds
> bond #3/GC:124@C #3/GC:125@N reasonable false
Created 0 bonds
> bond #3/GC:125@C #3/GC:126@N reasonable false
Created 0 bonds
> bond #3/GC:126@C #3/GC:127@N reasonable false
Created 0 bonds
> bond #3/GC:127@C #3/GC:128@N reasonable false
Created 0 bonds
> bond #3/GC:128@C #3/GC:129@N reasonable false
Created 1 bond
> bond #3/GC:27@C #3/GC:28@N reasonable false
Created 0 bonds
> bond #3/GC:28@C #3/GC:29@N reasonable false
Created 0 bonds
> bond #3/GC:29@C #3/GC:30@N reasonable false
Created 1 bond
> bond #3/GC:30@C #3/GC:31@N reasonable false
Created 1 bond
> bond #3/GC:25@C #3/GC:26@N reasonable false
Created 1 bond
> bond #3/GC:26@C #3/GC:27@N reasonable false
Created 1 bond
> bond #3/GC:50@C #3/GC:51@N reasonable false
Created 1 bond
> bond #3/GC:51@C #3/GC:52@N reasonable false
Created 0 bonds
> bond #3/GC:52@C #3/GC:53@N reasonable false
Created 0 bonds
> bond #3/GC:53@C #3/GC:54@N reasonable false
Created 0 bonds
> bond #3/GC:54@C #3/GC:55@N reasonable false
Created 0 bonds
> bond #3/GC:55@C #3/GC:56@N reasonable false
Created 0 bonds
> bond #3/GC:56@C #3/GC:57@N reasonable false
Created 0 bonds
> bond #3/GC:57@C #3/GC:58@N reasonable false
Created 0 bonds
> bond #3/GC:58@C #3/GC:59@N reasonable false
Created 0 bonds
> bond #3/GC:59@C #3/GC:60@N reasonable false
Created 1 bond
> bond #3/GC:129@C #3/GC:130@N reasonable false
Created 0 bonds
> bond #3/GC:130@C #3/GC:131@N reasonable false
Created 0 bonds
> bond #3/GC:131@C #3/GC:132@N reasonable false
Created 0 bonds
> bond #3/GC:132@C #3/GC:133@N reasonable false
Created 0 bonds
> bond #3/GC:133@C #3/GC:134@N reasonable false
Created 0 bonds
> bond #3/GC:134@C #3/GC:135@N reasonable false
Created 0 bonds
> bond #3/GC:135@C #3/GC:136@N reasonable false
Created 0 bonds
> bond #3/GC:136@C #3/GC:137@N reasonable false
Created 0 bonds
> bond #3/GC:137@C #3/GC:138@N reasonable false
Created 0 bonds
> bond #3/GC:138@C #3/GC:139@N reasonable false
Created 0 bonds
> bond #3/GC:139@C #3/GC:140@N reasonable false
Created 0 bonds
> bond #3/GC:140@C #3/GC:141@N reasonable false
Created 0 bonds
> bond #3/GC:141@C #3/GC:142@N reasonable false
Created 0 bonds
> bond #3/GC:142@C #3/GC:143@N reasonable false
Created 0 bonds
> bond #3/GC:143@C #3/GC:144@N reasonable false
Created 0 bonds
> bond #3/GC:144@C #3/GC:145@N reasonable false
Created 0 bonds
> bond #3/GC:145@C #3/GC:146@N reasonable false
Created 0 bonds
> bond #3/GC:146@C #3/GC:147@N reasonable false
Created 0 bonds
> bond #3/GC:147@C #3/GC:148@N reasonable false
Created 0 bonds
> bond #3/GC:148@C #3/GC:149@N reasonable false
Created 0 bonds
> bond #3/GC:149@C #3/GC:150@N reasonable false
Created 0 bonds
> bond #3/GC:150@C #3/GC:151@N reasonable false
Created 0 bonds
> bond #3/GC:151@C #3/GC:152@N reasonable false
Created 0 bonds
> bond #3/GC:152@C #3/GC:153@N reasonable false
Created 0 bonds
> bond #3/GC:153@C #3/GC:154@N reasonable false
Created 0 bonds
> bond #3/GC:154@C #3/GC:155@N reasonable false
Created 0 bonds
> bond #3/GC:155@C #3/GC:156@N reasonable false
Created 0 bonds
> bond #3/GC:156@C #3/GC:157@N reasonable false
Created 0 bonds
> bond #3/GC:157@C #3/GC:158@N reasonable false
Created 0 bonds
> bond #3/GC:158@C #3/GC:159@N reasonable false
Created 0 bonds
> bond #3/GC:159@C #3/GC:160@N reasonable false
Created 0 bonds
> bond #3/GC:160@C #3/GC:161@N reasonable false
Created 0 bonds
> bond #3/GC:161@C #3/GC:162@N reasonable false
Created 0 bonds
> bond #3/GC:162@C #3/GC:163@N reasonable false
Created 0 bonds
> bond #3/GC:163@C #3/GC:164@N reasonable false
Created 0 bonds
> bond #3/GC:164@C #3/GC:165@N reasonable false
Created 0 bonds
> bond #3/GC:165@C #3/GC:166@N reasonable false
Created 0 bonds
> bond #3/GC:166@C #3/GC:167@N reasonable false
Created 0 bonds
> bond #3/GC:167@C #3/GC:168@N reasonable false
Created 0 bonds
> bond #3/GC:168@C #3/GC:169@N reasonable false
Created 0 bonds
> bond #3/GC:169@C #3/GC:170@N reasonable false
Created 0 bonds
> bond #3/GC:170@C #3/GC:171@N reasonable false
Created 0 bonds
> bond #3/GC:171@C #3/GC:172@N reasonable false
Created 0 bonds
> bond #3/GC:64@C #3/GC:65@N reasonable false
Created 0 bonds
> bond #3/GC:65@C #3/GC:66@N reasonable false
Created 0 bonds
> bond #3/GC:66@C #3/GC:67@N reasonable false
Created 0 bonds
> bond #3/GC:67@C #3/GC:68@N reasonable false
Created 0 bonds
> bond #3/GC:68@C #3/GC:69@N reasonable false
Created 0 bonds
> bond #3/GC:69@C #3/GC:70@N reasonable false
Created 0 bonds
> bond #3/GC:70@C #3/GC:71@N reasonable false
Created 0 bonds
> bond #3/GC:71@C #3/GC:72@N reasonable false
Created 0 bonds
> bond #3/GC:72@C #3/GC:73@N reasonable false
Created 0 bonds
> bond #3/GC:73@C #3/GC:74@N reasonable false
Created 0 bonds
> bond #3/GC:74@C #3/GC:75@N reasonable false
Created 0 bonds
> bond #3/GC:75@C #3/GC:76@N reasonable false
Created 0 bonds
> bond #3/GC:76@C #3/GC:77@N reasonable false
Created 0 bonds
> bond #3/GC:77@C #3/GC:78@N reasonable false
Created 0 bonds
> bond #3/GC:78@C #3/GC:79@N reasonable false
Created 0 bonds
> bond #3/GC:79@C #3/GC:80@N reasonable false
Created 0 bonds
> bond #3/GC:80@C #3/GC:81@N reasonable false
Created 0 bonds
> bond #3/GC:81@C #3/GC:82@N reasonable false
Created 0 bonds
> bond #3/GC:82@C #3/GC:83@N reasonable false
Created 0 bonds
> bond #3/GC:83@C #3/GC:84@N reasonable false
Created 0 bonds
> bond #3/GC:84@C #3/GC:85@N reasonable false
Created 0 bonds
> bond #3/GC:85@C #3/GC:86@N reasonable false
Created 0 bonds
> bond #3/GC:86@C #3/GC:87@N reasonable false
Created 0 bonds
> bond #3/GC:87@C #3/GC:88@N reasonable false
Created 0 bonds
> bond #3/GC:88@C #3/GC:89@N reasonable false
Created 0 bonds
> bond #3/GC:89@C #3/GC:90@N reasonable false
Created 0 bonds
> bond #3/GC:90@C #3/GC:91@N reasonable false
Created 0 bonds
> bond #3/GC:91@C #3/GC:92@N reasonable false
Created 1 bond
> bond #3/GC:31@C #3/GC:32@N reasonable false
Created 0 bonds
> bond #3/GC:32@C #3/GC:33@N reasonable false
Created 0 bonds
> bond #3/GC:33@C #3/GC:34@N reasonable false
Created 0 bonds
> bond #3/GC:34@C #3/GC:35@N reasonable false
Created 1 bond
> bond #3/GC:60@C #3/GC:61@N reasonable false
Created 0 bonds
> bond #3/GC:61@C #3/GC:62@N reasonable false
Created 0 bonds
> bond #3/GC:62@C #3/GC:63@N reasonable false
Created 0 bonds
> bond #3/GC:63@C #3/GC:64@N reasonable false
Created 1 bond
> bond #3/GC:35@C #3/GC:36@N reasonable false
Created 0 bonds
> bond #3/GC:36@C #3/GC:37@N reasonable false
Created 0 bonds
> bond #3/GC:37@C #3/GC:38@N reasonable false
Created 0 bonds
> bond #3/GC:38@C #3/GC:39@N reasonable false
Created 0 bonds
> bond #3/GC:39@C #3/GC:40@N reasonable false
Created 0 bonds
> bond #3/GC:40@C #3/GC:41@N reasonable false
Created 0 bonds
> bond #3/GC:41@C #3/GC:42@N reasonable false
Created 0 bonds
> bond #3/GC:42@C #3/GC:43@N reasonable false
Created 0 bonds
> bond #3/GC:43@C #3/GC:44@N reasonable false
Created 0 bonds
> bond #3/GC:44@C #3/GC:45@N reasonable false
Created 0 bonds
> bond #3/GC:45@C #3/GC:46@N reasonable false
Created 0 bonds
> bond #3/GC:46@C #3/GC:47@N reasonable false
Created 0 bonds
> bond #3/GC:47@C #3/GC:48@N reasonable false
Created 0 bonds
> bond #3/GC:48@C #3/GC:49@N reasonable false
Created 0 bonds
> bond #3/GC:49@C #3/GC:50@N reasonable false
Created 1 bond
> bond #3/GC:17@C #3/GC:18@N reasonable false
Created 0 bonds
> bond #3/GC:18@C #3/GC:19@N reasonable false
Created 0 bonds
> bond #3/GC:19@C #3/GC:20@N reasonable false
Created 0 bonds
> bond #3/GC:20@C #3/GC:21@N reasonable false
Created 0 bonds
> bond #3/GC:21@C #3/GC:22@N reasonable false
Created 0 bonds
> bond #3/GC:22@C #3/GC:23@N reasonable false
Created 0 bonds
> bond #3/GC:23@C #3/GC:24@N reasonable false
Created 0 bonds
> bond #3/GC:24@C #3/GC:25@N reasonable false
Created 1 bond
> swapaa #3/GC:17 ARG
Using Dunbrack library
mutadedModel #3/GC ALA 17: phi none, psi 24.1 trans
Applying ARG rotamer (chi angles: 66.4 -175.2 -177.5 -82.5) to mutadedModel
#3/GC ARG 17
> color #3/GC:17 yellow
> swapaa #3/GC:18 VAL
Using Dunbrack library
mutadedModel #3/GC SER 18: phi -65.6, psi -64.9 trans
Applying VAL rotamer (chi angles: 172.7) to mutadedModel #3/GC VAL 18
> color #3/GC:18 yellow
> swapaa #3/GC:19 SER
Using Dunbrack library
mutadedModel #3/GC PHE 19: phi -67.1, psi -7.8 trans
Applying SER rotamer (chi angles: -65.2) to mutadedModel #3/GC SER 19
> color #3/GC:19 yellow
> swapaa #3/GC:20 LEU
Using Dunbrack library
mutadedModel #3/GC VAL 20: phi -104.1, psi 10.0 trans
Applying LEU rotamer (chi angles: -83.3 62.4) to mutadedModel #3/GC LEU 20
> color #3/GC:20 yellow
> swapaa #3/GC:21 VAL
Using Dunbrack library
mutadedModel #3/GC ASN 21: phi -157.0, psi -10.6 trans
Applying VAL rotamer (chi angles: 66.4) to mutadedModel #3/GC VAL 21
> color #3/GC:21 yellow
> swapaa #3/GC:22 PHE
Using Dunbrack library
mutadedModel #3/GC LYS 22: phi -119.7, psi 158.6 trans
Applying PHE rotamer (chi angles: -63.4 90.9) to mutadedModel #3/GC PHE 22
> color #3/GC:22 yellow
> swapaa #3/GC:23 LYS
Using Dunbrack library
mutadedModel #3/GC GLN 23: phi -81.2, psi 135.5 trans
Applying LYS rotamer (chi angles: -176.3 -95.2 -71.1 178.0) to mutadedModel
#3/GC LYS 23
> color #3/GC:23 yellow
> swapaa #3/GC:24 GLN
Using Dunbrack library
mutadedModel #3/GC ARG 24: phi -63.4, psi -178.1 trans
Applying GLN rotamer (chi angles: -65.6 -179.3 53.8) to mutadedModel #3/GC GLN
24
> color #3/GC:24 yellow
> swapaa #3/GC:25 LEU
Using Dunbrack library
mutadedModel #3/GC GLY 25: phi -30.5, psi -7.1 trans
Applying LEU rotamer (chi angles: 71.7 165.6) to mutadedModel #3/GC LEU 25
> color #3/GC:25 yellow
> swapaa #3/GC:26 GLU
Using Dunbrack library
mutadedModel #3/GC GLY 26: phi -7.0, psi -35.7 cis
Applying GLU rotamer (chi angles: -176.9 177.5 -0.8) to mutadedModel #3/GC GLU
26
> color #3/GC:26 yellow
> swapaa #3/GC:27 GLY
Using Dunbrack library
Swapping mutadedModel #3/GC PRO 27 to GLY
> color #3/GC:27 yellow
> swapaa #3/GC:28 ASN
Using Dunbrack library
mutadedModel #3/GC MET 28: phi 177.6, psi 114.6 trans
Applying ASN rotamer (chi angles: -68.0 -36.6) to mutadedModel #3/GC ASN 28
> color #3/GC:28 yellow
> swapaa #3/GC:29 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC GLY 29 to ALA
> color #3/GC:29 yellow
> swapaa #3/GC:30 PRO
Using Dunbrack library
mutadedModel #3/GC SER 30: phi -9.8, psi 16.7 cis
Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/GC PRO 30
> color #3/GC:30 yellow
> swapaa #3/GC:31 LEU
Using Dunbrack library
mutadedModel #3/GC PRO 31: phi -163.8, psi 159.7 trans
Applying LEU rotamer (chi angles: -73.9 -60.3) to mutadedModel #3/GC LEU 31
> color #3/GC:31 yellow
> swapaa #3/GC:32 THR
Using Dunbrack library
mutadedModel #3/GC LYS 32: phi -73.5, psi 91.1 trans
Applying THR rotamer (chi angles: -59.5) to mutadedModel #3/GC THR 32
> color #3/GC:32 yellow
> swapaa #3/GC:33 LYS
Using Dunbrack library
mutadedModel #3/GC ASN 33: phi 52.7, psi 74.9 trans
Applying LYS rotamer (chi angles: -58.1 -68.4 -173.3 -67.0) to mutadedModel
#3/GC LYS 33
> color #3/GC:33 yellow
> swapaa #3/GC:34 LYS
Using Dunbrack library
mutadedModel #3/GC ASN 34: phi 4.8, psi 29.4 trans
Applying LYS rotamer (chi angles: -177.3 176.2 174.5 64.9) to mutadedModel
#3/GC LYS 34
> color #3/GC:34 yellow
> swapaa #3/GC:35 ASN
Using Dunbrack library
mutadedModel #3/GC HIS 35: phi -52.6, psi 170.2 trans
Applying ASN rotamer (chi angles: 66.2 172.9) to mutadedModel #3/GC ASN 35
> color #3/GC:35 yellow
> swapaa #3/GC:36 LYS
Using Dunbrack library
mutadedModel #3/GC PRO 36: phi -62.1, psi -173.6 trans
Applying LYS rotamer (chi angles: 69.2 -89.5 176.9 -68.2) to mutadedModel
#3/GC LYS 36
> color #3/GC:36 yellow
> swapaa #3/GC:37 PRO
Using Dunbrack library
mutadedModel #3/GC ASN 37: phi -101.6, psi 56.4 trans
Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/GC PRO 37
> color #3/GC:37 yellow
> swapaa #3/GC:38 VAL
Using Dunbrack library
mutadedModel #3/GC SER 38: phi -65.6, psi 27.8 trans
Applying VAL rotamer (chi angles: -61.5) to mutadedModel #3/GC VAL 38
> color #3/GC:38 yellow
> swapaa #3/GC:39 ASN
Using Dunbrack library
mutadedModel #3/GC GLY 39: phi 53.2, psi -7.5 cis
Applying ASN rotamer (chi angles: -164.3 120.5) to mutadedModel #3/GC ASN 39
> color #3/GC:39 yellow
> swapaa #3/GC:41 TRP
Using Dunbrack library
mutadedModel #3/GC GLY 41: phi -107.1, psi -14.4 trans
Applying TRP rotamer (chi angles: -65.3 42.3) to mutadedModel #3/GC TRP 41
> color #3/GC:41 yellow
> swapaa #3/GC:43 ASP
Using Dunbrack library
mutadedModel #3/GC VAL 43: phi -74.7, psi -30.7 trans
Applying ASP rotamer (chi angles: -71.2 7.5) to mutadedModel #3/GC ASP 43
> color #3/GC:43 yellow
> swapaa #3/GC:44 GLU
Using Dunbrack library
mutadedModel #3/GC VAL 44: phi -96.6, psi -39.5 trans
Applying GLU rotamer (chi angles: -64.1 -65.9 -41.1) to mutadedModel #3/GC GLU
44
> color #3/GC:44 yellow
> swapaa #3/GC:45 PHE
Using Dunbrack library
mutadedModel #3/GC GLY 45: phi -93.1, psi -11.9 trans
Applying PHE rotamer (chi angles: -164.9 48.2) to mutadedModel #3/GC PHE 45
> color #3/GC:45 yellow
> swapaa #3/GC:46 MET
Using Dunbrack library
mutadedModel #3/GC LYS 46: phi -121.3, psi -175.1 trans
Applying MET rotamer (chi angles: 64.6 179.1 -71.6) to mutadedModel #3/GC MET
46
> color #3/GC:46 yellow
> swapaa #3/GC:47 LYS
Using Dunbrack library
mutadedModel #3/GC PHE 47: phi -108.9, psi 162.7 trans
Applying LYS rotamer (chi angles: 63.7 93.2 173.8 178.2) to mutadedModel #3/GC
LYS 47
> color #3/GC:47 yellow
> swapaa #3/GC:48 PRO
Using Dunbrack library
mutadedModel #3/GC THR 48: phi -81.7, psi 166.6 trans
Applying PRO rotamer (chi angles: 32.2 -37.1) to mutadedModel #3/GC PRO 48
> color #3/GC:48 yellow
> swapaa #3/GC:50 GLN
Using Dunbrack library
mutadedModel #3/GC ASP 50: phi -103.3, psi -158.8 trans
Applying GLN rotamer (chi angles: -65.8 81.3 -108.3) to mutadedModel #3/GC GLN
50
> color #3/GC:50 yellow
> swapaa #3/GC:51 SER
Using Dunbrack library
mutadedModel #3/GC THR 51: phi -88.5, psi 141.9 trans
Applying SER rotamer (chi angles: -64.4) to mutadedModel #3/GC SER 51
> color #3/GC:51 yellow
> swapaa #3/GC:52 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC PRO 52 to ALA
> color #3/GC:52 yellow
> swapaa #3/GC:53 GLU
Using Dunbrack library
mutadedModel #3/GC SER 53: phi -78.8, psi -36.2 trans
Applying GLU rotamer (chi angles: -66.5 80.5 9.8) to mutadedModel #3/GC GLU 53
> color #3/GC:53 yellow
> swapaa #3/GC:54 MET
Using Dunbrack library
mutadedModel #3/GC ILE 54: phi -97.5, psi -33.1 trans
Applying MET rotamer (chi angles: -65.1 177.9 70.5) to mutadedModel #3/GC MET
54
> color #3/GC:54 yellow
> swapaa #3/GC:55 THR
Using Dunbrack library
mutadedModel #3/GC ALA 55: phi -51.3, psi 18.2 trans
Applying THR rotamer (chi angles: -60.4) to mutadedModel #3/GC THR 55
> color #3/GC:55 yellow
> swapaa #3/GC:56 THR
Using Dunbrack library
mutadedModel #3/GC GLU 56: phi -123.8, psi -32.6 trans
Applying THR rotamer (chi angles: 60.6) to mutadedModel #3/GC THR 56
> color #3/GC:56 yellow
> swapaa #3/GC:58 TYR
Using Dunbrack library
mutadedModel #3/GC PHE 58: phi -77.0, psi -75.7 trans
Applying TYR rotamer (chi angles: -70.3 133.2) to mutadedModel #3/GC TYR 58
> color #3/GC:58 yellow
> swapaa #3/GC:60 ARG
Using Dunbrack library
mutadedModel #3/GC GLY 60: phi 141.6, psi 160.2 cis
Applying ARG rotamer (chi angles: -73.8 85.6 61.5 85.9) to mutadedModel #3/GC
ARG 60
> color #3/GC:60 yellow
> swapaa #3/GC:61 TYR
Using Dunbrack library
mutadedModel #3/GC GLY 61: phi 97.9, psi 4.4 cis
Applying TYR rotamer (chi angles: -60.8 79.7) to mutadedModel #3/GC TYR 61
> color #3/GC:61 yellow
> swapaa #3/GC:63 LYS
Using Dunbrack library
mutadedModel #3/GC ARG 63: phi -59.3, psi -120.0 trans
Applying LYS rotamer (chi angles: -177.9 174.8 73.9 70.3) to mutadedModel
#3/GC LYS 63
> color #3/GC:63 yellow
> swapaa #3/GC:64 TYR
Using Dunbrack library
mutadedModel #3/GC GLY 64: phi -123.1, psi -9.4 trans
Applying TYR rotamer (chi angles: 63.1 107.3) to mutadedModel #3/GC TYR 64
> color #3/GC:64 yellow
> swapaa #3/GC:65 SER
Using Dunbrack library
mutadedModel #3/GC THR 65: phi -62.0, psi 146.3 trans
Applying SER rotamer (chi angles: 176.0) to mutadedModel #3/GC SER 65
> color #3/GC:65 yellow
> swapaa #3/GC:66 ASP
Using Dunbrack library
mutadedModel #3/GC VAL 66: phi -80.2, psi 122.8 trans
Applying ASP rotamer (chi angles: -69.3 37.9) to mutadedModel #3/GC ASP 66
> color #3/GC:66 yellow
> swapaa #3/GC:67 PRO
Using Dunbrack library
mutadedModel #3/GC THR 67: phi -70.9, psi -21.2 trans
Applying PRO rotamer (chi angles: 25.3 -34.6) to mutadedModel #3/GC PRO 67
> color #3/GC:67 yellow
> swapaa #3/GC:68 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC GLU 68 to ALA
> color #3/GC:68 yellow
> swapaa #3/GC:69 LEU
Using Dunbrack library
mutadedModel #3/GC ARG 69: phi -98.5, psi -7.6 trans
Applying LEU rotamer (chi angles: -61.2 176.5) to mutadedModel #3/GC LEU 69
> color #3/GC:69 yellow
> swapaa #3/GC:70 CYS
Using Dunbrack library
mutadedModel #3/GC LEU 70: phi -76.8, psi -20.4 trans
Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/GC CYS 70
> color #3/GC:70 yellow
> swapaa #3/GC:71 ASP
Using Dunbrack library
mutadedModel #3/GC SER 71: phi -87.4, psi 115.0 trans
Applying ASP rotamer (chi angles: 59.9 -51.7) to mutadedModel #3/GC ASP 71
> color #3/GC:71 yellow
> swapaa #3/GC:72 VAL
Using Dunbrack library
mutadedModel #3/GC ASN 72: phi -68.6, psi 112.4 trans
Applying VAL rotamer (chi angles: 177.0) to mutadedModel #3/GC VAL 72
> color #3/GC:72 yellow
> swapaa #3/GC:73 ASP
Using Dunbrack library
mutadedModel #3/GC PRO 73: phi -69.9, psi 123.1 trans
Applying ASP rotamer (chi angles: -175.5 -43.1) to mutadedModel #3/GC ASP 73
> color #3/GC:73 yellow
> swapaa #3/GC:77 GLU
Using Dunbrack library
mutadedModel #3/GC ARG 77: phi -80.1, psi 128.9 trans
Applying GLU rotamer (chi angles: -176.4 178.6 -1.2) to mutadedModel #3/GC GLU
77
> color #3/GC:77 yellow
> swapaa #3/GC:78 VAL
Using Dunbrack library
mutadedModel #3/GC ILE 78: phi -96.2, psi 101.9 trans
Applying VAL rotamer (chi angles: 179.9) to mutadedModel #3/GC VAL 78
> color #3/GC:78 yellow
> swapaa #3/GC:79 VAL
Using Dunbrack library
mutadedModel #3/GC THR 79: phi -94.2, psi 100.3 trans
Applying VAL rotamer (chi angles: 179.6) to mutadedModel #3/GC VAL 79
> color #3/GC:79 yellow
> swapaa #3/GC:80 LEU
Using Dunbrack library
mutadedModel #3/GC GLN 80: phi -96.7, psi 161.2 trans
Applying LEU rotamer (chi angles: 179.2 65.2) to mutadedModel #3/GC LEU 80
> color #3/GC:80 yellow
> swapaa #3/GC:81 ASN
Using Dunbrack library
mutadedModel #3/GC LYS 81: phi -67.7, psi 127.2 trans
Applying ASN rotamer (chi angles: -67.9 87.8) to mutadedModel #3/GC ASN 81
> color #3/GC:81 yellow
> swapaa #3/GC:85 ASP
Using Dunbrack library
mutadedModel #3/GC GLY 85: phi -71.4, psi 7.7 trans
Applying ASP rotamer (chi angles: -168.7 0.3) to mutadedModel #3/GC ASP 85
> color #3/GC:85 yellow
> swapaa #3/GC:87 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC SER 87 to ALA
> color #3/GC:87 yellow
> swapaa #3/GC:89 GLN
Using Dunbrack library
mutadedModel #3/GC ASN 89: phi -77.6, psi 19.6 trans
Applying GLN rotamer (chi angles: -65.3 178.8 -22.5) to mutadedModel #3/GC GLN
89
> color #3/GC:89 yellow
> swapaa #3/GC:92 ILE
Using Dunbrack library
mutadedModel #3/GC VAL 92: phi -71.5, psi 15.7 trans
Applying ILE rotamer (chi angles: 57.6 78.7) to mutadedModel #3/GC ILE 92
> color #3/GC:92 yellow
> swapaa #3/GC:93 GLU
Using Dunbrack library
mutadedModel #3/GC GLN 93: phi -77.3, psi -31.1 trans
Applying GLU rotamer (chi angles: -65.5 81.7 -49.6) to mutadedModel #3/GC GLU
93
> color #3/GC:93 yellow
> swapaa #3/GC:98 VAL
Using Dunbrack library
mutadedModel #3/GC ALA 98: phi -100.0, psi 152.3 trans
Applying VAL rotamer (chi angles: -62.4) to mutadedModel #3/GC VAL 98
> color #3/GC:98 yellow
> swapaa #3/GC:101 LYS
Using Dunbrack library
mutadedModel #3/GC ASP 101: phi -85.9, psi -19.4 trans
Applying LYS rotamer (chi angles: -178.1 67.8 178.4 -63.2) to mutadedModel
#3/GC LYS 101
> color #3/GC:101 yellow
> swapaa #3/GC:102 ASP
Using Dunbrack library
mutadedModel #3/GC LYS 102: phi -85.2, psi 19.4 trans
Applying ASP rotamer (chi angles: -67.2 -29.4) to mutadedModel #3/GC ASP 102
> color #3/GC:102 yellow
> swapaa #3/GC:103 TYR
Using Dunbrack library
mutadedModel #3/GC HIS 103: phi -96.1, psi 125.6 trans
Applying TYR rotamer (chi angles: 179.0 77.3) to mutadedModel #3/GC TYR 103
> color #3/GC:103 yellow
> swapaa #3/GC:104 ASP
Using Dunbrack library
mutadedModel #3/GC SER 104: phi -131.2, psi 165.1 trans
Applying ASP rotamer (chi angles: 64.3 17.8) to mutadedModel #3/GC ASP 104
> color #3/GC:104 yellow
> swapaa #3/GC:105 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC ASP 105 to ALA
> color #3/GC:105 yellow
> swapaa #3/GC:107 MET
Using Dunbrack library
mutadedModel #3/GC THR 107: phi -64.9, psi 74.1 trans
Applying MET rotamer (chi angles: -176.1 179.0 -70.3) to mutadedModel #3/GC
MET 107
> color #3/GC:107 yellow
> swapaa #3/GC:108 TRP
Using Dunbrack library
mutadedModel #3/GC ARG 108: phi -150.1, psi 147.1 trans
Applying TRP rotamer (chi angles: -62.0 -93.1) to mutadedModel #3/GC TRP 108
> color #3/GC:108 yellow
> swapaa #3/GC:109 ASP
Using Dunbrack library
mutadedModel #3/GC THR 109: phi -95.7, psi -144.1 trans
Applying ASP rotamer (chi angles: -166.8 -67.3) to mutadedModel #3/GC ASP 109
> color #3/GC:109 yellow
> swapaa #3/GC:112 PHE
Using Dunbrack library
mutadedModel #3/GC ARG 112: phi -64.8, psi -31.0 trans
Applying PHE rotamer (chi angles: -73.7 106.8) to mutadedModel #3/GC PHE 112
> color #3/GC:112 yellow
> swapaa #3/GC:118 LEU
Using Dunbrack library
mutadedModel #3/GC MET 118: phi -106.2, psi 123.8 trans
Applying LEU rotamer (chi angles: -59.2 176.5) to mutadedModel #3/GC LEU 118
> color #3/GC:118 yellow
> swapaa #3/GC:122 LEU
Using Dunbrack library
mutadedModel #3/GC SER 122: phi -124.4, psi 125.7 trans
Applying LEU rotamer (chi angles: -60.7 174.7) to mutadedModel #3/GC LEU 122
> color #3/GC:122 yellow
> swapaa #3/GC:123 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC PRO 123 to ALA
> color #3/GC:123 yellow
> swapaa #3/GC:124 ASP
Using Dunbrack library
mutadedModel #3/GC ALA 124: phi -72.7, psi -27.2 trans
Applying ASP rotamer (chi angles: 59.1 -22.9) to mutadedModel #3/GC ASP 124
> color #3/GC:124 yellow
> swapaa #3/GC:126 VAL
Using Dunbrack library
mutadedModel #3/GC THR 126: phi -84.1, psi 9.9 trans
Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/GC VAL 126
> color #3/GC:126 yellow
> swapaa #3/GC:127 GLU
Using Dunbrack library
mutadedModel #3/GC ALA 127: phi -82.1, psi -33.1 trans
Applying GLU rotamer (chi angles: -175.6 64.5 19.8) to mutadedModel #3/GC GLU
127
> color #3/GC:127 yellow
> swapaa #3/GC:128 ASP
Using Dunbrack library
mutadedModel #3/GC GLU 128: phi -75.3, psi -22.3 trans
Applying ASP rotamer (chi angles: -168.8 2.2) to mutadedModel #3/GC ASP 128
> color #3/GC:128 yellow
> swapaa #3/GC:129 ARG
Using Dunbrack library
mutadedModel #3/GC TRP 129: phi -74.5, psi 1.4 trans
Applying ARG rotamer (chi angles: 69.7 -177.4 177.4 87.0) to mutadedModel
#3/GC ARG 129
> color #3/GC:129 yellow
> swapaa #3/GC:132 VAL
Using Dunbrack library
mutadedModel #3/GC LEU 132: phi -61.1, psi -34.0 trans
Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/GC VAL 132
> color #3/GC:132 yellow
> swapaa #3/GC:133 THR
Using Dunbrack library
mutadedModel #3/GC ILE 133: phi -80.6, psi -34.8 trans
Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/GC THR 133
> color #3/GC:133 yellow
> swapaa #3/GC:134 ASP
Using Dunbrack library
mutadedModel #3/GC ALA 134: phi -75.2, psi -40.5 trans
Applying ASP rotamer (chi angles: 57.9 74.5) to mutadedModel #3/GC ASP 134
> color #3/GC:134 yellow
> swapaa #3/GC:138 ASN
Using Dunbrack library
mutadedModel #3/GC GLU 138: phi -67.0, psi -42.7 trans
Applying ASN rotamer (chi angles: -73.1 -22.4) to mutadedModel #3/GC ASN 138
> color #3/GC:138 yellow
> swapaa #3/GC:139 SER
Using Dunbrack library
mutadedModel #3/GC GLU 139: phi -67.6, psi -34.6 trans
Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/GC SER 139
> color #3/GC:139 yellow
> swapaa #3/GC:141 MET
Using Dunbrack library
mutadedModel #3/GC PHE 141: phi -50.0, psi -59.4 trans
Applying MET rotamer (chi angles: 179.4 -176.3 71.4) to mutadedModel #3/GC MET
141
> color #3/GC:141 yellow
> swapaa #3/GC:145 VAL
Using Dunbrack library
mutadedModel #3/GC LEU 145: phi -67.9, psi -28.0 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/GC VAL 145
> color #3/GC:145 yellow
> swapaa #3/GC:148 MET
Using Dunbrack library
mutadedModel #3/GC ILE 148: phi -67.3, psi -44.7 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/GC MET
148
> color #3/GC:148 yellow
> swapaa #3/GC:150 ARG
Using Dunbrack library
mutadedModel #3/GC TYR 150: phi -66.4, psi -36.8 trans
Applying ARG rotamer (chi angles: 179.0 65.5 -178.0 85.8) to mutadedModel
#3/GC ARG 150
> color #3/GC:150 yellow
> swapaa #3/GC:151 TYR
Using Dunbrack library
mutadedModel #3/GC PHE 151: phi -88.2, psi -11.9 trans
Applying TYR rotamer (chi angles: -66.8 10.3) to mutadedModel #3/GC TYR 151
> color #3/GC:151 yellow
> swapaa #3/GC:156 LEU
Using Dunbrack library
mutadedModel #3/GC GLN 156: phi -69.8, psi -23.7 trans
Applying LEU rotamer (chi angles: -171.7 59.3) to mutadedModel #3/GC LEU 156
> color #3/GC:156 yellow
> swapaa #3/GC:157 TRP
Using Dunbrack library
mutadedModel #3/GC ARG 157: phi -78.1, psi -38.2 trans
Applying TRP rotamer (chi angles: -71.1 107.7) to mutadedModel #3/GC TRP 157
> color #3/GC:157 yellow
> swapaa #3/GC:158 TYR
Using Dunbrack library
mutadedModel #3/GC ARG 158: phi -66.2, psi -14.8 trans
Applying TYR rotamer (chi angles: -70.2 -17.0) to mutadedModel #3/GC TYR 158
> color #3/GC:158 yellow
> swapaa #3/GC:161 GLN
Using Dunbrack library
mutadedModel #3/GC LEU 161: phi -87.4, psi 173.7 trans
Applying GLN rotamer (chi angles: -60.5 -63.3 -109.6) to mutadedModel #3/GC
GLN 161
> color #3/GC:161 yellow
> swapaa #3/GC:163 ALA
Using Dunbrack library
Swapping mutadedModel #3/GC SER 163 to ALA
> color #3/GC:163 yellow
> swapaa #3/GC:164 MET
Using Dunbrack library
mutadedModel #3/GC GLN 164: phi -52.1, psi -35.9 trans
Applying MET rotamer (chi angles: -174.4 179.9 -68.7) to mutadedModel #3/GC
MET 164
> color #3/GC:164 yellow
> swapaa #3/GC:165 SER
Using Dunbrack library
mutadedModel #3/GC GLU 165: phi -69.3, psi -39.6 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/GC SER 165
> color #3/GC:165 yellow
> swapaa #3/GC:166 MET
Using Dunbrack library
mutadedModel #3/GC GLU 166: phi -68.1, psi -28.7 trans
Applying MET rotamer (chi angles: -68.5 177.3 70.7) to mutadedModel #3/GC MET
166
> color #3/GC:166 yellow
> swapaa #3/GC:168 GLY
Using Dunbrack library
Swapping mutadedModel #3/GC ALA 168 to GLY
> color #3/GC:168 yellow
> swapaa #3/GC:170 MET
Using Dunbrack library
mutadedModel #3/GC LEU 170: phi -79.7, psi -15.1 trans
Applying MET rotamer (chi angles: -67.3 -58.7 -67.1) to mutadedModel #3/GC MET
170
> color #3/GC:170 yellow
> swapaa #3/GC:171 ASN
Using Dunbrack library
mutadedModel #3/GC ILE 171: phi -86.1, psi -8.1 trans
Applying ASN rotamer (chi angles: -69.1 -32.5) to mutadedModel #3/GC ASN 171
> color #3/GC:171 yellow
> swapaa #3/GC:172 ILE
Using Dunbrack library
mutadedModel #3/GC LEU 172: phi -70.4, psi none trans
Applying ILE rotamer (chi angles: -63.8 170.1) to mutadedModel #3/GC ILE 172
> color #3/GC:172 yellow
> select #3/Gc
3780 atoms, 3838 bonds, 1 pseudobond, 482 residues, 2 models selected
> bond #3/Gc:326@C #3/Gc:327@N reasonable false
Created 0 bonds
> bond #3/Gc:327@C #3/Gc:328@N reasonable false
Created 1 bond
> bond #3/Gc:63@C #3/Gc:64@N reasonable false
Created 0 bonds
> bond #3/Gc:64@C #3/Gc:65@N reasonable false
Created 1 bond
> bond #3/Gc:470@C #3/Gc:471@N reasonable false
Created 0 bonds
> bond #3/Gc:471@C #3/Gc:472@N reasonable false
Created 0 bonds
> bond #3/Gc:472@C #3/Gc:473@N reasonable false
Created 0 bonds
> bond #3/Gc:473@C #3/Gc:474@N reasonable false
Created 0 bonds
> bond #3/Gc:474@C #3/Gc:475@N reasonable false
Created 0 bonds
> bond #3/Gc:475@C #3/Gc:476@N reasonable false
Created 0 bonds
> bond #3/Gc:476@C #3/Gc:477@N reasonable false
Created 0 bonds
> bond #3/Gc:477@C #3/Gc:478@N reasonable false
Created 0 bonds
> bond #3/Gc:478@C #3/Gc:479@N reasonable false
Created 0 bonds
> bond #3/Gc:479@C #3/Gc:480@N reasonable false
Created 0 bonds
> bond #3/Gc:480@C #3/Gc:481@N reasonable false
Created 0 bonds
> bond #3/Gc:481@C #3/Gc:482@N reasonable false
Created 0 bonds
> bond #3/Gc:482@C #3/Gc:483@N reasonable false
Created 0 bonds
> bond #3/Gc:483@C #3/Gc:484@N reasonable false
Created 0 bonds
> bond #3/Gc:484@C #3/Gc:485@N reasonable false
Created 0 bonds
> bond #3/Gc:485@C #3/Gc:486@N reasonable false
Created 0 bonds
> bond #3/Gc:486@C #3/Gc:487@N reasonable false
Created 0 bonds
> bond #3/Gc:487@C #3/Gc:488@N reasonable false
Created 0 bonds
> bond #3/Gc:488@C #3/Gc:489@N reasonable false
Created 0 bonds
> bond #3/Gc:489@C #3/Gc:490@N reasonable false
Created 1 bond
> bond #3/Gc:253@C #3/Gc:254@N reasonable false
Created 0 bonds
> bond #3/Gc:254@C #3/Gc:255@N reasonable false
Created 0 bonds
> bond #3/Gc:255@C #3/Gc:256@N reasonable false
Created 0 bonds
> bond #3/Gc:256@C #3/Gc:257@N reasonable false
Created 0 bonds
> bond #3/Gc:257@C #3/Gc:258@N reasonable false
Created 0 bonds
> bond #3/Gc:258@C #3/Gc:259@N reasonable false
Created 0 bonds
> bond #3/Gc:259@C #3/Gc:260@N reasonable false
Created 0 bonds
> bond #3/Gc:65@C #3/Gc:66@N reasonable false
Created 0 bonds
> bond #3/Gc:66@C #3/Gc:67@N reasonable false
Created 0 bonds
> bond #3/Gc:67@C #3/Gc:68@N reasonable false
Created 0 bonds
> bond #3/Gc:68@C #3/Gc:69@N reasonable false
Created 0 bonds
> bond #3/Gc:69@C #3/Gc:70@N reasonable false
Created 0 bonds
> bond #3/Gc:70@C #3/Gc:71@N reasonable false
Created 0 bonds
> bond #3/Gc:71@C #3/Gc:72@N reasonable false
Created 0 bonds
> bond #3/Gc:72@C #3/Gc:73@N reasonable false
Created 0 bonds
> bond #3/Gc:73@C #3/Gc:74@N reasonable false
Created 0 bonds
> bond #3/Gc:74@C #3/Gc:75@N reasonable false
Created 0 bonds
> bond #3/Gc:75@C #3/Gc:76@N reasonable false
Created 0 bonds
> bond #3/Gc:76@C #3/Gc:77@N reasonable false
Created 0 bonds
> bond #3/Gc:77@C #3/Gc:78@N reasonable false
Created 0 bonds
> bond #3/Gc:78@C #3/Gc:79@N reasonable false
Created 0 bonds
> bond #3/Gc:79@C #3/Gc:80@N reasonable false
Created 0 bonds
> bond #3/Gc:80@C #3/Gc:81@N reasonable false
Created 0 bonds
> bond #3/Gc:81@C #3/Gc:82@N reasonable false
Created 0 bonds
> bond #3/Gc:82@C #3/Gc:83@N reasonable false
Created 0 bonds
> bond #3/Gc:83@C #3/Gc:84@N reasonable false
Created 0 bonds
> bond #3/Gc:84@C #3/Gc:85@N reasonable false
Created 0 bonds
> bond #3/Gc:85@C #3/Gc:86@N reasonable false
Created 0 bonds
> bond #3/Gc:86@C #3/Gc:87@N reasonable false
Created 1 bond
> bond #3/Gc:32@C #3/Gc:33@N reasonable false
Created 0 bonds
> bond #3/Gc:33@C #3/Gc:34@N reasonable false
Created 0 bonds
> bond #3/Gc:34@C #3/Gc:35@N reasonable false
Created 0 bonds
> bond #3/Gc:35@C #3/Gc:36@N reasonable false
Created 0 bonds
> bond #3/Gc:36@C #3/Gc:37@N reasonable false
Created 0 bonds
> bond #3/Gc:37@C #3/Gc:38@N reasonable false
Created 0 bonds
> bond #3/Gc:38@C #3/Gc:39@N reasonable false
Created 0 bonds
> bond #3/Gc:39@C #3/Gc:40@N reasonable false
Created 0 bonds
> bond #3/Gc:40@C #3/Gc:41@N reasonable false
Created 0 bonds
> bond #3/Gc:41@C #3/Gc:42@N reasonable false
Created 0 bonds
> bond #3/Gc:42@C #3/Gc:43@N reasonable false
Created 0 bonds
> bond #3/Gc:43@C #3/Gc:44@N reasonable false
Created 0 bonds
> bond #3/Gc:44@C #3/Gc:45@N reasonable false
Created 0 bonds
> bond #3/Gc:45@C #3/Gc:46@N reasonable false
Created 0 bonds
> bond #3/Gc:46@C #3/Gc:47@N reasonable false
Created 0 bonds
> bond #3/Gc:47@C #3/Gc:48@N reasonable false
Created 0 bonds
> bond #3/Gc:48@C #3/Gc:49@N reasonable false
Created 0 bonds
> bond #3/Gc:49@C #3/Gc:50@N reasonable false
Created 0 bonds
> bond #3/Gc:50@C #3/Gc:51@N reasonable false
Created 0 bonds
> bond #3/Gc:51@C #3/Gc:52@N reasonable false
Created 0 bonds
> bond #3/Gc:52@C #3/Gc:53@N reasonable false
Created 0 bonds
> bond #3/Gc:53@C #3/Gc:54@N reasonable false
Created 0 bonds
> bond #3/Gc:54@C #3/Gc:55@N reasonable false
Created 0 bonds
> bond #3/Gc:55@C #3/Gc:56@N reasonable false
Created 0 bonds
> bond #3/Gc:56@C #3/Gc:57@N reasonable false
Created 0 bonds
> bond #3/Gc:57@C #3/Gc:58@N reasonable false
Created 0 bonds
> bond #3/Gc:58@C #3/Gc:59@N reasonable false
Created 0 bonds
> bond #3/Gc:59@C #3/Gc:60@N reasonable false
Created 0 bonds
> bond #3/Gc:60@C #3/Gc:61@N reasonable false
Created 0 bonds
> bond #3/Gc:61@C #3/Gc:62@N reasonable false
Created 0 bonds
> bond #3/Gc:62@C #3/Gc:63@N reasonable false
Created 1 bond
> bond #3/Gc:314@C #3/Gc:315@N reasonable false
Created 0 bonds
> bond #3/Gc:315@C #3/Gc:316@N reasonable false
Created 0 bonds
> bond #3/Gc:316@C #3/Gc:317@N reasonable false
Created 0 bonds
> bond #3/Gc:317@C #3/Gc:318@N reasonable false
Created 0 bonds
> bond #3/Gc:318@C #3/Gc:319@N reasonable false
Created 0 bonds
> bond #3/Gc:319@C #3/Gc:320@N reasonable false
Created 0 bonds
> bond #3/Gc:320@C #3/Gc:321@N reasonable false
Created 0 bonds
> bond #3/Gc:321@C #3/Gc:322@N reasonable false
Created 0 bonds
> bond #3/Gc:322@C #3/Gc:323@N reasonable false
Created 0 bonds
> bond #3/Gc:31@C #3/Gc:32@N reasonable false
Created 1 bond
> bond #3/Gc:262@C #3/Gc:263@N reasonable false
Created 0 bonds
> bond #3/Gc:263@C #3/Gc:264@N reasonable false
Created 0 bonds
> bond #3/Gc:264@C #3/Gc:265@N reasonable false
Created 0 bonds
> bond #3/Gc:265@C #3/Gc:266@N reasonable false
Created 0 bonds
> bond #3/Gc:266@C #3/Gc:267@N reasonable false
Created 0 bonds
> bond #3/Gc:267@C #3/Gc:268@N reasonable false
Created 0 bonds
> bond #3/Gc:268@C #3/Gc:269@N reasonable false
Created 0 bonds
> bond #3/Gc:269@C #3/Gc:270@N reasonable false
Created 0 bonds
> bond #3/Gc:270@C #3/Gc:271@N reasonable false
Created 0 bonds
> bond #3/Gc:271@C #3/Gc:272@N reasonable false
Created 0 bonds
> bond #3/Gc:272@C #3/Gc:273@N reasonable false
Created 0 bonds
> bond #3/Gc:273@C #3/Gc:274@N reasonable false
Created 0 bonds
> bond #3/Gc:274@C #3/Gc:275@N reasonable false
Created 0 bonds
> bond #3/Gc:275@C #3/Gc:276@N reasonable false
Created 0 bonds
> bond #3/Gc:276@C #3/Gc:277@N reasonable false
Created 0 bonds
> bond #3/Gc:277@C #3/Gc:278@N reasonable false
Created 0 bonds
> bond #3/Gc:278@C #3/Gc:279@N reasonable false
Created 0 bonds
> bond #3/Gc:87@C #3/Gc:88@N reasonable false
Created 0 bonds
> bond #3/Gc:88@C #3/Gc:89@N reasonable false
Created 0 bonds
> bond #3/Gc:89@C #3/Gc:90@N reasonable false
Created 0 bonds
> bond #3/Gc:90@C #3/Gc:91@N reasonable false
Created 0 bonds
> bond #3/Gc:91@C #3/Gc:92@N reasonable false
Created 0 bonds
> bond #3/Gc:92@C #3/Gc:93@N reasonable false
Created 0 bonds
> bond #3/Gc:93@C #3/Gc:94@N reasonable false
Created 0 bonds
> bond #3/Gc:94@C #3/Gc:95@N reasonable false
Created 0 bonds
> bond #3/Gc:95@C #3/Gc:96@N reasonable false
Created 0 bonds
> bond #3/Gc:96@C #3/Gc:97@N reasonable false
Created 0 bonds
> bond #3/Gc:97@C #3/Gc:98@N reasonable false
Created 0 bonds
> bond #3/Gc:98@C #3/Gc:99@N reasonable false
Created 0 bonds
> bond #3/Gc:99@C #3/Gc:100@N reasonable false
Created 0 bonds
> bond #3/Gc:100@C #3/Gc:101@N reasonable false
Created 0 bonds
> bond #3/Gc:101@C #3/Gc:102@N reasonable false
Created 0 bonds
> bond #3/Gc:102@C #3/Gc:103@N reasonable false
Created 0 bonds
> bond #3/Gc:103@C #3/Gc:104@N reasonable false
Created 0 bonds
> bond #3/Gc:104@C #3/Gc:105@N reasonable false
Created 0 bonds
> bond #3/Gc:105@C #3/Gc:106@N reasonable false
Created 0 bonds
> bond #3/Gc:106@C #3/Gc:107@N reasonable false
Created 0 bonds
> bond #3/Gc:107@C #3/Gc:108@N reasonable false
Created 1 bond
> bond #3/Gc:108@C #3/Gc:109@N reasonable false
Created 0 bonds
> bond #3/Gc:109@C #3/Gc:110@N reasonable false
Created 0 bonds
> bond #3/Gc:110@C #3/Gc:111@N reasonable false
Created 0 bonds
> bond #3/Gc:111@C #3/Gc:112@N reasonable false
Created 0 bonds
> bond #3/Gc:112@C #3/Gc:113@N reasonable false
Created 0 bonds
> bond #3/Gc:113@C #3/Gc:114@N reasonable false
Created 0 bonds
> bond #3/Gc:114@C #3/Gc:115@N reasonable false
Created 0 bonds
> bond #3/Gc:115@C #3/Gc:116@N reasonable false
Created 0 bonds
> bond #3/Gc:116@C #3/Gc:117@N reasonable false
Created 0 bonds
> bond #3/Gc:117@C #3/Gc:118@N reasonable false
Created 0 bonds
> bond #3/Gc:118@C #3/Gc:119@N reasonable false
Created 0 bonds
> bond #3/Gc:119@C #3/Gc:120@N reasonable false
Created 0 bonds
> bond #3/Gc:120@C #3/Gc:121@N reasonable false
Created 0 bonds
> bond #3/Gc:121@C #3/Gc:122@N reasonable false
Created 0 bonds
> bond #3/Gc:122@C #3/Gc:123@N reasonable false
Created 0 bonds
> bond #3/Gc:123@C #3/Gc:124@N reasonable false
Created 0 bonds
> bond #3/Gc:124@C #3/Gc:125@N reasonable false
Created 0 bonds
> bond #3/Gc:125@C #3/Gc:126@N reasonable false
Created 0 bonds
> bond #3/Gc:126@C #3/Gc:127@N reasonable false
Created 0 bonds
> bond #3/Gc:127@C #3/Gc:128@N reasonable false
Created 0 bonds
> bond #3/Gc:128@C #3/Gc:129@N reasonable false
Created 0 bonds
> bond #3/Gc:129@C #3/Gc:130@N reasonable false
Created 0 bonds
> bond #3/Gc:130@C #3/Gc:131@N reasonable false
Created 0 bonds
> bond #3/Gc:131@C #3/Gc:132@N reasonable false
Created 0 bonds
> bond #3/Gc:132@C #3/Gc:133@N reasonable false
Created 0 bonds
> bond #3/Gc:133@C #3/Gc:134@N reasonable false
Created 0 bonds
> bond #3/Gc:134@C #3/Gc:135@N reasonable false
Created 0 bonds
> bond #3/Gc:135@C #3/Gc:136@N reasonable false
Created 0 bonds
> bond #3/Gc:136@C #3/Gc:137@N reasonable false
Created 0 bonds
> bond #3/Gc:137@C #3/Gc:138@N reasonable false
Created 0 bonds
> bond #3/Gc:138@C #3/Gc:139@N reasonable false
Created 0 bonds
> bond #3/Gc:139@C #3/Gc:140@N reasonable false
Created 0 bonds
> bond #3/Gc:140@C #3/Gc:141@N reasonable false
Created 0 bonds
> bond #3/Gc:141@C #3/Gc:142@N reasonable false
Created 0 bonds
> bond #3/Gc:142@C #3/Gc:143@N reasonable false
Created 0 bonds
> bond #3/Gc:143@C #3/Gc:144@N reasonable false
Created 0 bonds
> bond #3/Gc:144@C #3/Gc:145@N reasonable false
Created 0 bonds
> bond #3/Gc:145@C #3/Gc:146@N reasonable false
Created 0 bonds
> bond #3/Gc:146@C #3/Gc:147@N reasonable false
Created 0 bonds
> bond #3/Gc:147@C #3/Gc:148@N reasonable false
Created 0 bonds
> bond #3/Gc:148@C #3/Gc:149@N reasonable false
Created 0 bonds
> bond #3/Gc:149@C #3/Gc:150@N reasonable false
Created 0 bonds
> bond #3/Gc:150@C #3/Gc:151@N reasonable false
Created 0 bonds
> bond #3/Gc:151@C #3/Gc:152@N reasonable false
Created 0 bonds
> bond #3/Gc:152@C #3/Gc:153@N reasonable false
Created 0 bonds
> bond #3/Gc:153@C #3/Gc:154@N reasonable false
Created 0 bonds
> bond #3/Gc:154@C #3/Gc:155@N reasonable false
Created 0 bonds
> bond #3/Gc:155@C #3/Gc:156@N reasonable false
Created 0 bonds
> bond #3/Gc:156@C #3/Gc:157@N reasonable false
Created 0 bonds
> bond #3/Gc:157@C #3/Gc:158@N reasonable false
Created 0 bonds
> bond #3/Gc:158@C #3/Gc:159@N reasonable false
Created 0 bonds
> bond #3/Gc:159@C #3/Gc:160@N reasonable false
Created 0 bonds
> bond #3/Gc:160@C #3/Gc:161@N reasonable false
Created 0 bonds
> bond #3/Gc:161@C #3/Gc:162@N reasonable false
Created 0 bonds
> bond #3/Gc:162@C #3/Gc:163@N reasonable false
Created 0 bonds
> bond #3/Gc:163@C #3/Gc:164@N reasonable false
Created 0 bonds
> bond #3/Gc:164@C #3/Gc:165@N reasonable false
Created 0 bonds
> bond #3/Gc:165@C #3/Gc:166@N reasonable false
Created 0 bonds
> bond #3/Gc:166@C #3/Gc:167@N reasonable false
Created 0 bonds
> bond #3/Gc:167@C #3/Gc:168@N reasonable false
Created 0 bonds
> bond #3/Gc:168@C #3/Gc:169@N reasonable false
Created 0 bonds
> bond #3/Gc:169@C #3/Gc:170@N reasonable false
Created 0 bonds
> bond #3/Gc:170@C #3/Gc:171@N reasonable false
Created 0 bonds
> bond #3/Gc:171@C #3/Gc:172@N reasonable false
Created 0 bonds
> bond #3/Gc:172@C #3/Gc:173@N reasonable false
Created 0 bonds
> bond #3/Gc:173@C #3/Gc:174@N reasonable false
Created 0 bonds
> bond #3/Gc:174@C #3/Gc:175@N reasonable false
Created 0 bonds
> bond #3/Gc:175@C #3/Gc:176@N reasonable false
Created 0 bonds
> bond #3/Gc:176@C #3/Gc:177@N reasonable false
Created 0 bonds
> bond #3/Gc:177@C #3/Gc:178@N reasonable false
Created 0 bonds
> bond #3/Gc:178@C #3/Gc:179@N reasonable false
Created 0 bonds
> bond #3/Gc:179@C #3/Gc:180@N reasonable false
Created 0 bonds
> bond #3/Gc:180@C #3/Gc:181@N reasonable false
Created 0 bonds
> bond #3/Gc:181@C #3/Gc:182@N reasonable false
Created 0 bonds
> bond #3/Gc:182@C #3/Gc:183@N reasonable false
Created 0 bonds
> bond #3/Gc:183@C #3/Gc:184@N reasonable false
Created 0 bonds
> bond #3/Gc:184@C #3/Gc:185@N reasonable false
Created 0 bonds
> bond #3/Gc:185@C #3/Gc:186@N reasonable false
Created 0 bonds
> bond #3/Gc:186@C #3/Gc:187@N reasonable false
Created 0 bonds
> bond #3/Gc:187@C #3/Gc:188@N reasonable false
Created 0 bonds
> bond #3/Gc:188@C #3/Gc:189@N reasonable false
Created 0 bonds
> bond #3/Gc:189@C #3/Gc:190@N reasonable false
Created 0 bonds
> bond #3/Gc:190@C #3/Gc:191@N reasonable false
Created 0 bonds
> bond #3/Gc:191@C #3/Gc:192@N reasonable false
Created 0 bonds
> bond #3/Gc:192@C #3/Gc:193@N reasonable false
Created 0 bonds
> bond #3/Gc:193@C #3/Gc:194@N reasonable false
Created 0 bonds
> bond #3/Gc:194@C #3/Gc:195@N reasonable false
Created 0 bonds
> bond #3/Gc:195@C #3/Gc:196@N reasonable false
Created 0 bonds
> bond #3/Gc:196@C #3/Gc:197@N reasonable false
Created 0 bonds
> bond #3/Gc:197@C #3/Gc:198@N reasonable false
Created 0 bonds
> bond #3/Gc:198@C #3/Gc:199@N reasonable false
Created 0 bonds
> bond #3/Gc:199@C #3/Gc:200@N reasonable false
Created 0 bonds
> bond #3/Gc:200@C #3/Gc:201@N reasonable false
Created 0 bonds
> bond #3/Gc:201@C #3/Gc:202@N reasonable false
Created 0 bonds
> bond #3/Gc:202@C #3/Gc:203@N reasonable false
Created 0 bonds
> bond #3/Gc:203@C #3/Gc:204@N reasonable false
Created 0 bonds
> bond #3/Gc:204@C #3/Gc:205@N reasonable false
Created 0 bonds
> bond #3/Gc:205@C #3/Gc:206@N reasonable false
Created 0 bonds
> bond #3/Gc:206@C #3/Gc:207@N reasonable false
Created 0 bonds
> bond #3/Gc:207@C #3/Gc:208@N reasonable false
Created 0 bonds
> bond #3/Gc:208@C #3/Gc:209@N reasonable false
Created 0 bonds
> bond #3/Gc:209@C #3/Gc:210@N reasonable false
Created 0 bonds
> bond #3/Gc:210@C #3/Gc:211@N reasonable false
Created 0 bonds
> bond #3/Gc:211@C #3/Gc:212@N reasonable false
Created 0 bonds
> bond #3/Gc:212@C #3/Gc:213@N reasonable false
Created 0 bonds
> bond #3/Gc:213@C #3/Gc:214@N reasonable false
Created 0 bonds
> bond #3/Gc:214@C #3/Gc:215@N reasonable false
Created 0 bonds
> bond #3/Gc:215@C #3/Gc:216@N reasonable false
Created 0 bonds
> bond #3/Gc:216@C #3/Gc:217@N reasonable false
Created 0 bonds
> bond #3/Gc:217@C #3/Gc:218@N reasonable false
Created 0 bonds
> bond #3/Gc:218@C #3/Gc:219@N reasonable false
Created 0 bonds
> bond #3/Gc:219@C #3/Gc:220@N reasonable false
Created 0 bonds
> bond #3/Gc:220@C #3/Gc:221@N reasonable false
Created 0 bonds
> bond #3/Gc:221@C #3/Gc:222@N reasonable false
Created 0 bonds
> bond #3/Gc:222@C #3/Gc:223@N reasonable false
Created 0 bonds
> bond #3/Gc:223@C #3/Gc:224@N reasonable false
Created 0 bonds
> bond #3/Gc:224@C #3/Gc:225@N reasonable false
Created 0 bonds
> bond #3/Gc:225@C #3/Gc:226@N reasonable false
Created 0 bonds
> bond #3/Gc:226@C #3/Gc:227@N reasonable false
Created 0 bonds
> bond #3/Gc:227@C #3/Gc:228@N reasonable false
Created 0 bonds
> bond #3/Gc:228@C #3/Gc:229@N reasonable false
Created 0 bonds
> bond #3/Gc:229@C #3/Gc:230@N reasonable false
Created 0 bonds
> bond #3/Gc:230@C #3/Gc:231@N reasonable false
Created 0 bonds
> bond #3/Gc:231@C #3/Gc:232@N reasonable false
Created 0 bonds
> bond #3/Gc:232@C #3/Gc:233@N reasonable false
Created 0 bonds
> bond #3/Gc:233@C #3/Gc:234@N reasonable false
Created 0 bonds
> bond #3/Gc:234@C #3/Gc:235@N reasonable false
Created 0 bonds
> bond #3/Gc:235@C #3/Gc:236@N reasonable false
Created 0 bonds
> bond #3/Gc:236@C #3/Gc:237@N reasonable false
Created 0 bonds
> bond #3/Gc:237@C #3/Gc:238@N reasonable false
Created 0 bonds
> bond #3/Gc:238@C #3/Gc:239@N reasonable false
Created 1 bond
> bond #3/Gc:239@C #3/Gc:240@N reasonable false
Created 0 bonds
> bond #3/Gc:240@C #3/Gc:241@N reasonable false
Created 0 bonds
> bond #3/Gc:241@C #3/Gc:242@N reasonable false
Created 0 bonds
> bond #3/Gc:242@C #3/Gc:243@N reasonable false
Created 0 bonds
> bond #3/Gc:243@C #3/Gc:244@N reasonable false
Created 0 bonds
> bond #3/Gc:244@C #3/Gc:245@N reasonable false
Created 0 bonds
> bond #3/Gc:245@C #3/Gc:246@N reasonable false
Created 0 bonds
> bond #3/Gc:246@C #3/Gc:247@N reasonable false
Created 0 bonds
> bond #3/Gc:247@C #3/Gc:248@N reasonable false
Created 0 bonds
> bond #3/Gc:248@C #3/Gc:249@N reasonable false
Created 0 bonds
> bond #3/Gc:249@C #3/Gc:250@N reasonable false
Created 1 bond
> bond #3/Gc:10@C #3/Gc:11@N reasonable false
Created 0 bonds
> bond #3/Gc:11@C #3/Gc:12@N reasonable false
Created 0 bonds
> bond #3/Gc:12@C #3/Gc:13@N reasonable false
Created 0 bonds
> bond #3/Gc:13@C #3/Gc:14@N reasonable false
Created 0 bonds
> bond #3/Gc:14@C #3/Gc:15@N reasonable false
Created 0 bonds
> bond #3/Gc:15@C #3/Gc:16@N reasonable false
Created 0 bonds
> bond #3/Gc:16@C #3/Gc:17@N reasonable false
Created 0 bonds
> bond #3/Gc:17@C #3/Gc:18@N reasonable false
Created 1 bond
> bond #3/Gc:338@C #3/Gc:339@N reasonable false
Created 0 bonds
> bond #3/Gc:339@C #3/Gc:340@N reasonable false
Created 0 bonds
> bond #3/Gc:340@C #3/Gc:341@N reasonable false
Created 0 bonds
> bond #3/Gc:341@C #3/Gc:342@N reasonable false
Created 0 bonds
> bond #3/Gc:342@C #3/Gc:343@N reasonable false
Created 0 bonds
> bond #3/Gc:343@C #3/Gc:344@N reasonable false
Created 0 bonds
> bond #3/Gc:344@C #3/Gc:345@N reasonable false
Created 0 bonds
> bond #3/Gc:345@C #3/Gc:346@N reasonable false
Created 0 bonds
> bond #3/Gc:346@C #3/Gc:347@N reasonable false
Created 0 bonds
> bond #3/Gc:347@C #3/Gc:348@N reasonable false
Created 0 bonds
> bond #3/Gc:348@C #3/Gc:349@N reasonable false
Created 0 bonds
> bond #3/Gc:349@C #3/Gc:350@N reasonable false
Created 0 bonds
> bond #3/Gc:350@C #3/Gc:351@N reasonable false
Created 0 bonds
> bond #3/Gc:351@C #3/Gc:352@N reasonable false
Created 0 bonds
> bond #3/Gc:352@C #3/Gc:353@N reasonable false
Created 0 bonds
> bond #3/Gc:353@C #3/Gc:354@N reasonable false
Created 0 bonds
> bond #3/Gc:354@C #3/Gc:355@N reasonable false
Created 0 bonds
> bond #3/Gc:355@C #3/Gc:356@N reasonable false
Created 0 bonds
> bond #3/Gc:356@C #3/Gc:357@N reasonable false
Created 0 bonds
> bond #3/Gc:357@C #3/Gc:358@N reasonable false
Created 0 bonds
> bond #3/Gc:358@C #3/Gc:359@N reasonable false
Created 0 bonds
> bond #3/Gc:359@C #3/Gc:360@N reasonable false
Created 0 bonds
> bond #3/Gc:360@C #3/Gc:361@N reasonable false
Created 0 bonds
> bond #3/Gc:361@C #3/Gc:362@N reasonable false
Created 0 bonds
> bond #3/Gc:362@C #3/Gc:363@N reasonable false
Created 0 bonds
> bond #3/Gc:363@C #3/Gc:364@N reasonable false
Created 0 bonds
> bond #3/Gc:364@C #3/Gc:365@N reasonable false
Created 0 bonds
> bond #3/Gc:365@C #3/Gc:366@N reasonable false
Created 0 bonds
> bond #3/Gc:366@C #3/Gc:367@N reasonable false
Created 0 bonds
> bond #3/Gc:367@C #3/Gc:368@N reasonable false
Created 0 bonds
> bond #3/Gc:368@C #3/Gc:369@N reasonable false
Created 0 bonds
> bond #3/Gc:369@C #3/Gc:370@N reasonable false
Created 0 bonds
> bond #3/Gc:370@C #3/Gc:371@N reasonable false
Created 0 bonds
> bond #3/Gc:371@C #3/Gc:372@N reasonable false
Created 0 bonds
> bond #3/Gc:372@C #3/Gc:373@N reasonable false
Created 0 bonds
> bond #3/Gc:373@C #3/Gc:374@N reasonable false
Created 0 bonds
> bond #3/Gc:374@C #3/Gc:375@N reasonable false
Created 0 bonds
> bond #3/Gc:375@C #3/Gc:376@N reasonable false
Created 0 bonds
> bond #3/Gc:376@C #3/Gc:377@N reasonable false
Created 0 bonds
> bond #3/Gc:377@C #3/Gc:378@N reasonable false
Created 0 bonds
> bond #3/Gc:378@C #3/Gc:379@N reasonable false
Created 0 bonds
> bond #3/Gc:379@C #3/Gc:380@N reasonable false
Created 0 bonds
> bond #3/Gc:380@C #3/Gc:381@N reasonable false
Created 0 bonds
> bond #3/Gc:381@C #3/Gc:382@N reasonable false
Created 0 bonds
> bond #3/Gc:382@C #3/Gc:383@N reasonable false
Created 0 bonds
> bond #3/Gc:383@C #3/Gc:384@N reasonable false
Created 0 bonds
> bond #3/Gc:384@C #3/Gc:385@N reasonable false
Created 0 bonds
> bond #3/Gc:385@C #3/Gc:386@N reasonable false
Created 0 bonds
> bond #3/Gc:386@C #3/Gc:387@N reasonable false
Created 0 bonds
> bond #3/Gc:387@C #3/Gc:388@N reasonable false
Created 0 bonds
> bond #3/Gc:388@C #3/Gc:389@N reasonable false
Created 0 bonds
> bond #3/Gc:389@C #3/Gc:390@N reasonable false
Created 0 bonds
> bond #3/Gc:390@C #3/Gc:391@N reasonable false
Created 0 bonds
> bond #3/Gc:391@C #3/Gc:392@N reasonable false
Created 0 bonds
> bond #3/Gc:392@C #3/Gc:393@N reasonable false
Created 0 bonds
> bond #3/Gc:393@C #3/Gc:394@N reasonable false
Created 0 bonds
> bond #3/Gc:394@C #3/Gc:395@N reasonable false
Created 0 bonds
> bond #3/Gc:395@C #3/Gc:396@N reasonable false
Created 0 bonds
> bond #3/Gc:396@C #3/Gc:397@N reasonable false
Created 0 bonds
> bond #3/Gc:397@C #3/Gc:398@N reasonable false
Created 0 bonds
> bond #3/Gc:398@C #3/Gc:399@N reasonable false
Created 0 bonds
> bond #3/Gc:399@C #3/Gc:400@N reasonable false
Created 0 bonds
> bond #3/Gc:400@C #3/Gc:401@N reasonable false
Created 0 bonds
> bond #3/Gc:401@C #3/Gc:402@N reasonable false
Created 0 bonds
> bond #3/Gc:402@C #3/Gc:403@N reasonable false
Created 0 bonds
> bond #3/Gc:403@C #3/Gc:404@N reasonable false
Created 0 bonds
> bond #3/Gc:404@C #3/Gc:405@N reasonable false
Created 0 bonds
> bond #3/Gc:405@C #3/Gc:406@N reasonable false
Created 0 bonds
> bond #3/Gc:406@C #3/Gc:407@N reasonable false
Created 0 bonds
> bond #3/Gc:407@C #3/Gc:408@N reasonable false
Created 0 bonds
> bond #3/Gc:408@C #3/Gc:409@N reasonable false
Created 0 bonds
> bond #3/Gc:409@C #3/Gc:410@N reasonable false
Created 0 bonds
> bond #3/Gc:410@C #3/Gc:411@N reasonable false
Created 0 bonds
> bond #3/Gc:411@C #3/Gc:412@N reasonable false
Created 0 bonds
> bond #3/Gc:412@C #3/Gc:413@N reasonable false
Created 0 bonds
> bond #3/Gc:413@C #3/Gc:414@N reasonable false
Created 0 bonds
> bond #3/Gc:414@C #3/Gc:415@N reasonable false
Created 0 bonds
> bond #3/Gc:415@C #3/Gc:416@N reasonable false
Created 0 bonds
> bond #3/Gc:416@C #3/Gc:417@N reasonable false
Created 0 bonds
> bond #3/Gc:417@C #3/Gc:418@N reasonable false
Created 0 bonds
> bond #3/Gc:418@C #3/Gc:419@N reasonable false
Created 0 bonds
> bond #3/Gc:419@C #3/Gc:420@N reasonable false
Created 0 bonds
> bond #3/Gc:420@C #3/Gc:421@N reasonable false
Created 0 bonds
> bond #3/Gc:421@C #3/Gc:422@N reasonable false
Created 0 bonds
> bond #3/Gc:422@C #3/Gc:423@N reasonable false
Created 0 bonds
> bond #3/Gc:423@C #3/Gc:424@N reasonable false
Created 0 bonds
> bond #3/Gc:424@C #3/Gc:425@N reasonable false
Created 0 bonds
> bond #3/Gc:425@C #3/Gc:426@N reasonable false
Created 0 bonds
> bond #3/Gc:426@C #3/Gc:427@N reasonable false
Created 0 bonds
> bond #3/Gc:427@C #3/Gc:428@N reasonable false
Created 0 bonds
> bond #3/Gc:428@C #3/Gc:429@N reasonable false
Created 0 bonds
> bond #3/Gc:429@C #3/Gc:430@N reasonable false
Created 0 bonds
> bond #3/Gc:430@C #3/Gc:431@N reasonable false
Created 0 bonds
> bond #3/Gc:431@C #3/Gc:432@N reasonable false
Created 0 bonds
> bond #3/Gc:432@C #3/Gc:433@N reasonable false
Created 0 bonds
> bond #3/Gc:433@C #3/Gc:434@N reasonable false
Created 0 bonds
> bond #3/Gc:434@C #3/Gc:435@N reasonable false
Created 0 bonds
> bond #3/Gc:435@C #3/Gc:436@N reasonable false
Created 0 bonds
> bond #3/Gc:436@C #3/Gc:437@N reasonable false
Created 0 bonds
> bond #3/Gc:437@C #3/Gc:438@N reasonable false
Created 0 bonds
> bond #3/Gc:438@C #3/Gc:439@N reasonable false
Created 0 bonds
> bond #3/Gc:439@C #3/Gc:440@N reasonable false
Created 0 bonds
> bond #3/Gc:440@C #3/Gc:441@N reasonable false
Created 0 bonds
> bond #3/Gc:441@C #3/Gc:442@N reasonable false
Created 0 bonds
> bond #3/Gc:442@C #3/Gc:443@N reasonable false
Created 0 bonds
> bond #3/Gc:443@C #3/Gc:444@N reasonable false
Created 0 bonds
> bond #3/Gc:444@C #3/Gc:445@N reasonable false
Created 0 bonds
> bond #3/Gc:445@C #3/Gc:446@N reasonable false
Created 0 bonds
> bond #3/Gc:446@C #3/Gc:447@N reasonable false
Created 0 bonds
> bond #3/Gc:447@C #3/Gc:448@N reasonable false
Created 0 bonds
> bond #3/Gc:448@C #3/Gc:449@N reasonable false
Created 0 bonds
> bond #3/Gc:449@C #3/Gc:450@N reasonable false
Created 0 bonds
> bond #3/Gc:450@C #3/Gc:451@N reasonable false
Created 0 bonds
> bond #3/Gc:451@C #3/Gc:452@N reasonable false
Created 0 bonds
> bond #3/Gc:452@C #3/Gc:453@N reasonable false
Created 0 bonds
> bond #3/Gc:453@C #3/Gc:454@N reasonable false
Created 0 bonds
> bond #3/Gc:454@C #3/Gc:455@N reasonable false
Created 0 bonds
> bond #3/Gc:455@C #3/Gc:456@N reasonable false
Created 0 bonds
> bond #3/Gc:456@C #3/Gc:457@N reasonable false
Created 0 bonds
> bond #3/Gc:457@C #3/Gc:458@N reasonable false
Created 0 bonds
> bond #3/Gc:458@C #3/Gc:459@N reasonable false
Created 0 bonds
> bond #3/Gc:459@C #3/Gc:460@N reasonable false
Created 0 bonds
> bond #3/Gc:460@C #3/Gc:461@N reasonable false
Created 0 bonds
> bond #3/Gc:461@C #3/Gc:462@N reasonable false
Created 0 bonds
> bond #3/Gc:462@C #3/Gc:463@N reasonable false
Created 0 bonds
> bond #3/Gc:463@C #3/Gc:464@N reasonable false
Created 0 bonds
> bond #3/Gc:464@C #3/Gc:465@N reasonable false
Created 0 bonds
> bond #3/Gc:465@C #3/Gc:466@N reasonable false
Created 0 bonds
> bond #3/Gc:466@C #3/Gc:467@N reasonable false
Created 0 bonds
> bond #3/Gc:467@C #3/Gc:468@N reasonable false
Created 0 bonds
> bond #3/Gc:468@C #3/Gc:469@N reasonable false
Created 0 bonds
> bond #3/Gc:469@C #3/Gc:470@N reasonable false
Created 1 bond
> bond #3/Gc:18@C #3/Gc:19@N reasonable false
Created 0 bonds
> bond #3/Gc:19@C #3/Gc:20@N reasonable false
Created 0 bonds
> bond #3/Gc:20@C #3/Gc:21@N reasonable false
Created 0 bonds
> bond #3/Gc:21@C #3/Gc:22@N reasonable false
Created 0 bonds
> bond #3/Gc:22@C #3/Gc:23@N reasonable false
Created 0 bonds
> bond #3/Gc:23@C #3/Gc:24@N reasonable false
Created 0 bonds
> bond #3/Gc:24@C #3/Gc:25@N reasonable false
Created 0 bonds
> bond #3/Gc:25@C #3/Gc:26@N reasonable false
Created 0 bonds
> bond #3/Gc:26@C #3/Gc:27@N reasonable false
Created 0 bonds
> bond #3/Gc:27@C #3/Gc:28@N reasonable false
Created 0 bonds
> bond #3/Gc:28@C #3/Gc:29@N reasonable false
Created 0 bonds
> bond #3/Gc:29@C #3/Gc:30@N reasonable false
Created 0 bonds
> bond #3/Gc:30@C #3/Gc:31@N reasonable false
Created 1 bond
> bond #3/Gc:289@C #3/Gc:290@N reasonable false
Created 0 bonds
> bond #3/Gc:290@C #3/Gc:291@N reasonable false
Created 0 bonds
> bond #3/Gc:291@C #3/Gc:292@N reasonable false
Created 0 bonds
> bond #3/Gc:292@C #3/Gc:293@N reasonable false
Created 0 bonds
> bond #3/Gc:293@C #3/Gc:294@N reasonable false
Created 0 bonds
> bond #3/Gc:294@C #3/Gc:295@N reasonable false
Created 0 bonds
> bond #3/Gc:295@C #3/Gc:296@N reasonable false
Created 0 bonds
> bond #3/Gc:296@C #3/Gc:297@N reasonable false
Created 0 bonds
> bond #3/Gc:297@C #3/Gc:298@N reasonable false
Created 0 bonds
> bond #3/Gc:298@C #3/Gc:299@N reasonable false
Created 0 bonds
> bond #3/Gc:299@C #3/Gc:300@N reasonable false
Created 0 bonds
> bond #3/Gc:300@C #3/Gc:301@N reasonable false
Created 0 bonds
> bond #3/Gc:301@C #3/Gc:302@N reasonable false
Created 0 bonds
> bond #3/Gc:302@C #3/Gc:303@N reasonable false
Created 0 bonds
> bond #3/Gc:303@C #3/Gc:304@N reasonable false
Created 0 bonds
> bond #3/Gc:304@C #3/Gc:305@N reasonable false
Created 0 bonds
> bond #3/Gc:305@C #3/Gc:306@N reasonable false
Created 0 bonds
> bond #3/Gc:306@C #3/Gc:307@N reasonable false
Created 0 bonds
> bond #3/Gc:307@C #3/Gc:308@N reasonable false
Created 0 bonds
> bond #3/Gc:308@C #3/Gc:309@N reasonable false
Created 0 bonds
> bond #3/Gc:309@C #3/Gc:310@N reasonable false
Created 0 bonds
> bond #3/Gc:310@C #3/Gc:311@N reasonable false
Created 0 bonds
> bond #3/Gc:311@C #3/Gc:312@N reasonable false
Created 0 bonds
> bond #3/Gc:282@C #3/Gc:283@N reasonable false
Created 0 bonds
> bond #3/Gc:283@C #3/Gc:284@N reasonable false
Created 0 bonds
> bond #3/Gc:284@C #3/Gc:285@N reasonable false
Created 0 bonds
> bond #3/Gc:285@C #3/Gc:286@N reasonable false
Created 0 bonds
> bond #3/Gc:286@C #3/Gc:287@N reasonable false
Created 0 bonds
> bond #3/Gc:287@C #3/Gc:288@N reasonable false
Created 0 bonds
> bond #3/Gc:288@C #3/Gc:289@N reasonable false
Created 1 bond
> bond #3/Gc:328@C #3/Gc:329@N reasonable false
Created 0 bonds
> bond #3/Gc:329@C #3/Gc:330@N reasonable false
Created 0 bonds
> bond #3/Gc:330@C #3/Gc:331@N reasonable false
Created 0 bonds
> bond #3/Gc:331@C #3/Gc:332@N reasonable false
Created 0 bonds
> bond #3/Gc:332@C #3/Gc:333@N reasonable false
Created 0 bonds
> bond #3/Gc:333@C #3/Gc:334@N reasonable false
Created 0 bonds
> bond #3/Gc:334@C #3/Gc:335@N reasonable false
Created 0 bonds
> bond #3/Gc:335@C #3/Gc:336@N reasonable false
Created 0 bonds
> bond #3/Gc:336@C #3/Gc:337@N reasonable false
Created 0 bonds
> bond #3/Gc:337@C #3/Gc:338@N reasonable false
Created 1 bond
> bond #3/Gc:250@C #3/Gc:251@N reasonable false
Created 0 bonds
> bond #3/Gc:251@C #3/Gc:252@N reasonable false
Created 0 bonds
> bond #3/Gc:252@C #3/Gc:253@N reasonable false
Created 1 bond
> bond #3/Gc:2@C #3/Gc:3@N reasonable false
Created 0 bonds
> bond #3/Gc:3@C #3/Gc:4@N reasonable false
Created 0 bonds
> bond #3/Gc:4@C #3/Gc:5@N reasonable false
Created 0 bonds
> bond #3/Gc:5@C #3/Gc:6@N reasonable false
Created 0 bonds
> bond #3/Gc:6@C #3/Gc:7@N reasonable false
Created 0 bonds
> bond #3/Gc:7@C #3/Gc:8@N reasonable false
Created 0 bonds
> swapaa #3/Gc:2 SER
Using Dunbrack library
mutadedModel #3/Gc GLY 2: phi none, psi -13.9 trans
Applying SER rotamer (chi angles: 65.3) to mutadedModel #3/Gc SER 2
> color #3/Gc:2 yellow
> swapaa #3/Gc:3 VAL
Using Dunbrack library
mutadedModel #3/Gc THR 3: phi 137.8, psi 96.1 trans
Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/Gc VAL 3
> color #3/Gc:3 yellow
> swapaa #3/Gc:4 SER
Using Dunbrack library
mutadedModel #3/Gc TYR 4: phi -56.4, psi -29.4 trans
Applying SER rotamer (chi angles: 66.4) to mutadedModel #3/Gc SER 4
> color #3/Gc:4 yellow
> swapaa #3/Gc:5 PHE
Using Dunbrack library
mutadedModel #3/Gc ALA 5: phi -62.2, psi -33.2 trans
Applying PHE rotamer (chi angles: 75.0 67.5) to mutadedModel #3/Gc PHE 5
> color #3/Gc:5 yellow
> swapaa #3/Gc:6 SER
Using Dunbrack library
mutadedModel #3/Gc ILE 6: phi -68.0, psi -38.1 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 6
> color #3/Gc:6 yellow
> swapaa #3/Gc:7 THR
Using Dunbrack library
mutadedModel #3/Gc LEU 7: phi -71.5, psi -47.5 trans
Applying THR rotamer (chi angles: -61.0) to mutadedModel #3/Gc THR 7
> color #3/Gc:7 yellow
> swapaa #3/Gc:8 LEU
Using Dunbrack library
mutadedModel #3/Gc ILE 8: phi -82.2, psi none trans
Applying LEU rotamer (chi angles: -64.7 174.5) to mutadedModel #3/Gc LEU 8
> color #3/Gc:8 yellow
> swapaa #3/Gc:10 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 10: phi none, psi 135.2 trans
Applying GLN rotamer (chi angles: -174.0 60.6 -124.1) to mutadedModel #3/Gc
GLN 10
> color #3/Gc:10 yellow
> swapaa #3/Gc:11 ARG
Using Dunbrack library
mutadedModel #3/Gc ALA 11: phi -67.3, psi 156.4 trans
Applying ARG rotamer (chi angles: 66.3 -176.8 -67.5 171.8) to mutadedModel
#3/Gc ARG 11
> color #3/Gc:11 yellow
> swapaa #3/Gc:12 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc LYS 12 to ALA
> color #3/Gc:12 yellow
> swapaa #3/Gc:13 ARG
Using Dunbrack library
mutadedModel #3/Gc ALA 13: phi -72.3, psi 110.9 trans
Applying ARG rotamer (chi angles: -61.7 -67.2 -63.9 175.9) to mutadedModel
#3/Gc ARG 13
> color #3/Gc:13 yellow
> swapaa #3/Gc:15 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 15 to ALA
> color #3/Gc:15 yellow
> swapaa #3/Gc:16 SER
Using Dunbrack library
mutadedModel #3/Gc PRO 16: phi -70.1, psi 133.7 trans
Applying SER rotamer (chi angles: 175.9) to mutadedModel #3/Gc SER 16
> color #3/Gc:16 yellow
> swapaa #3/Gc:17 ASN
Using Dunbrack library
mutadedModel #3/Gc VAL 17: phi -105.2, psi 103.4 trans
Applying ASN rotamer (chi angles: -176.5 -13.4) to mutadedModel #3/Gc ASN 17
> color #3/Gc:17 yellow
> swapaa #3/Gc:18 HIS
Using Dunbrack library
mutadedModel #3/Gc VAL 18: phi -110.5, psi 50.1 trans
Applying HIS rotamer (chi angles: 61.2 12.2) to mutadedModel #3/Gc HIS 18
> color #3/Gc:18 yellow
> swapaa #3/Gc:19 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 19 to ALA
> color #3/Gc:19 yellow
> swapaa #3/Gc:20 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 20: phi -88.6, psi 117.8 trans
Applying THR rotamer (chi angles: -179.0) to mutadedModel #3/Gc THR 20
> color #3/Gc:20 yellow
> swapaa #3/Gc:22 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc PRO 22 to ALA
> color #3/Gc:22 yellow
> swapaa #3/Gc:24 PHE
Using Dunbrack library
mutadedModel #3/Gc TRP 24: phi -77.8, psi -5.1 trans
Applying PHE rotamer (chi angles: -166.7 74.3) to mutadedModel #3/Gc PHE 24
> color #3/Gc:24 yellow
> swapaa #3/Gc:25 ARG
Using Dunbrack library
mutadedModel #3/Gc LYS 25: phi -83.4, psi -15.3 trans
Applying ARG rotamer (chi angles: -66.3 176.0 -66.9 172.3) to mutadedModel
#3/Gc ARG 25
> color #3/Gc:25 yellow
> swapaa #3/Gc:26 GLU
Using Dunbrack library
mutadedModel #3/Gc ASP 26: phi -93.7, psi -16.7 trans
Applying GLU rotamer (chi angles: -65.3 178.9 -5.2) to mutadedModel #3/Gc GLU
26
> color #3/Gc:26 yellow
> swapaa #3/Gc:28 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 28: phi -73.4, psi -25.3 trans
Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/Gc LEU 28
> color #3/Gc:28 yellow
> swapaa #3/Gc:29 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 29: phi -91.4, psi -5.9 trans
Applying SER rotamer (chi angles: 66.7) to mutadedModel #3/Gc SER 29
> color #3/Gc:29 yellow
> swapaa #3/Gc:30 LYS
Using Dunbrack library
mutadedModel #3/Gc GLU 30: phi -98.6, psi 85.2 trans
Applying LYS rotamer (chi angles: -64.8 179.3 177.6 65.8) to mutadedModel
#3/Gc LYS 30
> color #3/Gc:30 yellow
> swapaa #3/Gc:31 ILE
Using Dunbrack library
mutadedModel #3/Gc ARG 31: phi 0.7, psi -3.6 trans
Applying ILE rotamer (chi angles: -167.5 65.0) to mutadedModel #3/Gc ILE 31
> color #3/Gc:31 yellow
> swapaa #3/Gc:32 PRO
Using Dunbrack library
mutadedModel #3/Gc ALA 32: phi -74.5, psi 127.5 trans
Applying PRO rotamer (chi angles: 25.0 -32.3) to mutadedModel #3/Gc PRO 32
> color #3/Gc:32 yellow
> swapaa #3/Gc:34 THR
Using Dunbrack library
mutadedModel #3/Gc ARG 34: phi -111.6, psi 116.0 trans
Applying THR rotamer (chi angles: -60.7) to mutadedModel #3/Gc THR 34
> color #3/Gc:34 yellow
> swapaa #3/Gc:35 ASN
Using Dunbrack library
mutadedModel #3/Gc ILE 35: phi -123.5, psi 150.5 trans
Applying ASN rotamer (chi angles: -173.3 17.0) to mutadedModel #3/Gc ASN 35
> color #3/Gc:35 yellow
> swapaa #3/Gc:37 SER
Using Dunbrack library
mutadedModel #3/Gc GLU 37: phi -136.5, psi 137.2 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 37
> color #3/Gc:37 yellow
> swapaa #3/Gc:40 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ASP 40 to GLY
> color #3/Gc:40 yellow
> swapaa #3/Gc:41 ASN
Using Dunbrack library
mutadedModel #3/Gc VAL 41: phi -94.7, psi 2.5 trans
Applying ASN rotamer (chi angles: -69.5 -34.6) to mutadedModel #3/Gc ASN 41
> color #3/Gc:41 yellow
> swapaa #3/Gc:43 VAL
Using Dunbrack library
mutadedModel #3/Gc LEU 43: phi -89.6, psi 138.6 trans
Applying VAL rotamer (chi angles: 175.5) to mutadedModel #3/Gc VAL 43
> color #3/Gc:43 yellow
> swapaa #3/Gc:47 CYS
Using Dunbrack library
mutadedModel #3/Gc THR 47: phi -135.3, psi 149.8 trans
Applying CYS rotamer (chi angles: -176.6) to mutadedModel #3/Gc CYS 47
> color #3/Gc:47 yellow
> swapaa #3/Gc:48 GLU
Using Dunbrack library
mutadedModel #3/Gc LYS 48: phi -128.9, psi 132.8 trans
Applying GLU rotamer (chi angles: -178.1 177.9 -30.2) to mutadedModel #3/Gc
GLU 48
> color #3/Gc:48 yellow
> swapaa #3/Gc:49 GLU
Using Dunbrack library
mutadedModel #3/Gc LYS 49: phi -130.3, psi 98.6 trans
Applying GLU rotamer (chi angles: -64.0 -179.9 -4.2) to mutadedModel #3/Gc GLU
49
> color #3/Gc:49 yellow
> swapaa #3/Gc:52 LEU
Using Dunbrack library
mutadedModel #3/Gc ASP 52: phi -102.6, psi -16.3 trans
Applying LEU rotamer (chi angles: -61.2 176.9) to mutadedModel #3/Gc LEU 52
> color #3/Gc:52 yellow
> swapaa #3/Gc:54 LYS
Using Dunbrack library
mutadedModel #3/Gc GLU 54: phi -72.3, psi 158.4 trans
Applying LYS rotamer (chi angles: -81.9 69.8 178.6 177.5) to mutadedModel
#3/Gc LYS 54
> color #3/Gc:54 yellow
> swapaa #3/Gc:57 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 57: phi -81.1, psi 113.7 trans
Applying THR rotamer (chi angles: -59.5) to mutadedModel #3/Gc THR 57
> color #3/Gc:57 yellow
> swapaa #3/Gc:60 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 60: phi -125.1, psi 139.9 trans
Applying VAL rotamer (chi angles: 177.8) to mutadedModel #3/Gc VAL 60
> color #3/Gc:60 yellow
> swapaa #3/Gc:61 TRP
Using Dunbrack library
mutadedModel #3/Gc PHE 61: phi -125.1, psi 107.2 trans
Applying TRP rotamer (chi angles: -65.4 65.7) to mutadedModel #3/Gc TRP 61
> color #3/Gc:61 yellow
> swapaa #3/Gc:62 MET
Using Dunbrack library
mutadedModel #3/Gc LEU 62: phi -92.5, psi 122.1 trans
Applying MET rotamer (chi angles: -177.6 178.9 -71.1) to mutadedModel #3/Gc
MET 62
> color #3/Gc:62 yellow
> swapaa #3/Gc:63 ASP
Using Dunbrack library
mutadedModel #3/Gc ALA 63: phi -35.8, psi 81.0 trans
Applying ASP rotamer (chi angles: -69.4 -73.7) to mutadedModel #3/Gc ASP 63
> color #3/Gc:63 yellow
> swapaa #3/Gc:64 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 64 to ALA
> color #3/Gc:64 yellow
> swapaa #3/Gc:65 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ARG 65 to GLY
> color #3/Gc:65 yellow
> swapaa #3/Gc:69 GLU
Using Dunbrack library
mutadedModel #3/Gc ALA 69: phi -110.8, psi 139.3 trans
Applying GLU rotamer (chi angles: 62.3 -180.0 2.8) to mutadedModel #3/Gc GLU
69
> color #3/Gc:69 yellow
> swapaa #3/Gc:71 ILE
Using Dunbrack library
mutadedModel #3/Gc LEU 71: phi -68.2, psi -36.3 trans
Applying ILE rotamer (chi angles: -164.7 168.2) to mutadedModel #3/Gc ILE 71
> color #3/Gc:71 yellow
> swapaa #3/Gc:73 TYR
Using Dunbrack library
mutadedModel #3/Gc PHE 73: phi -126.3, psi 65.3 trans
Applying TYR rotamer (chi angles: -59.4 74.9) to mutadedModel #3/Gc TYR 73
> color #3/Gc:73 yellow
> swapaa #3/Gc:76 THR
Using Dunbrack library
mutadedModel #3/Gc CYS 76: phi -77.8, psi -47.4 trans
Applying THR rotamer (chi angles: -60.2) to mutadedModel #3/Gc THR 76
> color #3/Gc:76 yellow
> swapaa #3/Gc:78 ARG
Using Dunbrack library
mutadedModel #3/Gc TRP 78: phi -75.9, psi -30.8 trans
Applying ARG rotamer (chi angles: -69.5 -178.3 -176.5 -84.3) to mutadedModel
#3/Gc ARG 78
> color #3/Gc:78 yellow
> swapaa #3/Gc:81 GLU
Using Dunbrack library
mutadedModel #3/Gc LEU 81: phi -57.9, psi -38.1 trans
Applying GLU rotamer (chi angles: -178.0 65.6 20.3) to mutadedModel #3/Gc GLU
81
> color #3/Gc:81 yellow
> swapaa #3/Gc:82 LYS
Using Dunbrack library
mutadedModel #3/Gc PHE 82: phi -77.1, psi -19.9 trans
Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel
#3/Gc LYS 82
> color #3/Gc:82 yellow
> swapaa #3/Gc:83 CYS
Using Dunbrack library
mutadedModel #3/Gc VAL 83: phi -79.8, psi -31.4 trans
Applying CYS rotamer (chi angles: 67.3) to mutadedModel #3/Gc CYS 83
> color #3/Gc:83 yellow
> swapaa #3/Gc:87 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ARG 87 to GLY
> color #3/Gc:87 yellow
> swapaa #3/Gc:88 THR
Using Dunbrack library
mutadedModel #3/Gc SER 88: phi -101.2, psi 122.5 trans
Applying THR rotamer (chi angles: 57.8) to mutadedModel #3/Gc THR 88
> color #3/Gc:88 yellow
> swapaa #3/Gc:89 THR
Using Dunbrack library
mutadedModel #3/Gc ASP 89: phi -45.8, psi 6.4 trans
Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/Gc THR 89
> color #3/Gc:89 yellow
> swapaa #3/Gc:90 ASN
Using Dunbrack library
mutadedModel #3/Gc ASP 90: phi -130.3, psi -15.7 trans
Applying ASN rotamer (chi angles: 63.9 -82.1) to mutadedModel #3/Gc ASN 90
> color #3/Gc:90 yellow
> swapaa #3/Gc:91 GLN
Using Dunbrack library
mutadedModel #3/Gc LYS 91: phi -105.6, psi 134.2 trans
Applying GLN rotamer (chi angles: -64.0 179.8 -60.6) to mutadedModel #3/Gc GLN
91
> color #3/Gc:91 yellow
> swapaa #3/Gc:96 ILE
Using Dunbrack library
mutadedModel #3/Gc LEU 96: phi -66.8, psi -40.7 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/Gc ILE 96
> color #3/Gc:96 yellow
> swapaa #3/Gc:98 LYS
Using Dunbrack library
mutadedModel #3/Gc GLN 98: phi -68.7, psi -35.1 trans
Applying LYS rotamer (chi angles: -67.7 -65.9 -177.0 -178.7) to mutadedModel
#3/Gc LYS 98
> color #3/Gc:98 yellow
> swapaa #3/Gc:101 GLU
Using Dunbrack library
mutadedModel #3/Gc SER 101: phi -53.3, psi -50.1 trans
Applying GLU rotamer (chi angles: -67.9 82.6 -62.2) to mutadedModel #3/Gc GLU
101
> color #3/Gc:101 yellow
> swapaa #3/Gc:106 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 106: phi 160.7, psi 33.9 trans
Applying GLN rotamer (chi angles: -171.4 -83.7 -7.3) to mutadedModel #3/Gc GLN
106
> color #3/Gc:106 yellow
> swapaa #3/Gc:108 GLU
Using Dunbrack library
mutadedModel #3/Gc THR 108: phi -121.1, psi 124.6 trans
Applying GLU rotamer (chi angles: 177.4 66.2 -44.6) to mutadedModel #3/Gc GLU
108
> color #3/Gc:108 yellow
> swapaa #3/Gc:109 VAL
Using Dunbrack library
mutadedModel #3/Gc PRO 109: phi -102.6, psi 137.3 trans
Applying VAL rotamer (chi angles: 176.4) to mutadedModel #3/Gc VAL 109
> color #3/Gc:109 yellow
> swapaa #3/Gc:114 GLU
Using Dunbrack library
mutadedModel #3/Gc LEU 114: phi -117.8, psi -30.9 trans
Applying GLU rotamer (chi angles: -176.5 174.6 -29.7) to mutadedModel #3/Gc
GLU 114
> color #3/Gc:114 yellow
> swapaa #3/Gc:115 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 115: phi -98.4, psi 155.6 trans
Applying GLN rotamer (chi angles: 68.1 -84.0 29.5) to mutadedModel #3/Gc GLN
115
> color #3/Gc:115 yellow
> swapaa #3/Gc:117 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 117: phi -114.6, psi 145.8 trans
Applying TYR rotamer (chi angles: 62.0 88.9) to mutadedModel #3/Gc TYR 117
> color #3/Gc:117 yellow
> swapaa #3/Gc:119 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 119: phi -144.1, psi 159.7 trans
Applying TYR rotamer (chi angles: -60.7 144.6) to mutadedModel #3/Gc TYR 119
> color #3/Gc:119 yellow
> swapaa #3/Gc:120 MET
Using Dunbrack library
mutadedModel #3/Gc ARG 120: phi -151.6, psi 141.6 trans
Applying MET rotamer (chi angles: -178.2 179.2 -71.2) to mutadedModel #3/Gc
MET 120
> color #3/Gc:120 yellow
> swapaa #3/Gc:121 LYS
Using Dunbrack library
mutadedModel #3/Gc GLN 121: phi -97.1, psi 106.0 trans
Applying LYS rotamer (chi angles: -65.3 -179.2 -179.6 179.4) to mutadedModel
#3/Gc LYS 121
> color #3/Gc:121 yellow
> swapaa #3/Gc:122 VAL
Using Dunbrack library
mutadedModel #3/Gc SER 122: phi -133.4, psi 176.8 trans
Applying VAL rotamer (chi angles: -60.8) to mutadedModel #3/Gc VAL 122
> color #3/Gc:122 yellow
> swapaa #3/Gc:124 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 124: phi -65.8, psi -31.8 trans
Applying LYS rotamer (chi angles: -69.9 179.6 -180.0 178.4) to mutadedModel
#3/Gc LYS 124
> color #3/Gc:124 yellow
> swapaa #3/Gc:125 GLU
Using Dunbrack library
mutadedModel #3/Gc ASP 125: phi -83.3, psi -14.1 trans
Applying GLU rotamer (chi angles: 70.8 -84.5 73.2) to mutadedModel #3/Gc GLU
125
> color #3/Gc:125 yellow
> swapaa #3/Gc:127 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 127: phi -91.8, psi -44.8 trans
Applying THR rotamer (chi angles: -59.2) to mutadedModel #3/Gc THR 127
> color #3/Gc:127 yellow
> swapaa #3/Gc:128 ASP
Using Dunbrack library
mutadedModel #3/Gc LEU 128: phi -59.3, psi -56.1 trans
Applying ASP rotamer (chi angles: -175.6 63.2) to mutadedModel #3/Gc ASP 128
> color #3/Gc:128 yellow
> swapaa #3/Gc:129 ARG
Using Dunbrack library
mutadedModel #3/Gc LYS 129: phi -57.6, psi -22.3 trans
Applying ARG rotamer (chi angles: -178.0 74.4 -84.7 171.4) to mutadedModel
#3/Gc ARG 129
> color #3/Gc:129 yellow
> swapaa #3/Gc:131 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 131: phi -75.3, psi -40.0 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/Gc VAL 131
> color #3/Gc:131 yellow
> swapaa #3/Gc:136 ASP
Using Dunbrack library
mutadedModel #3/Gc GLU 136: phi -67.6, psi -34.0 trans
Applying ASP rotamer (chi angles: -170.4 34.9) to mutadedModel #3/Gc ASP 136
> color #3/Gc:136 yellow
> swapaa #3/Gc:138 VAL
Using Dunbrack library
mutadedModel #3/Gc SER 138: phi -89.8, psi 1.0 trans
Applying VAL rotamer (chi angles: -58.5) to mutadedModel #3/Gc VAL 138
> color #3/Gc:138 yellow
> swapaa #3/Gc:139 ARG
Using Dunbrack library
mutadedModel #3/Gc GLY 139: phi -143.5, psi -4.2 trans
Applying ARG rotamer (chi angles: 66.5 92.9 71.6 -112.0) to mutadedModel #3/Gc
ARG 139
> color #3/Gc:139 yellow
> swapaa #3/Gc:140 ASN
Using Dunbrack library
mutadedModel #3/Gc LEU 140: phi -104.7, psi 107.9 trans
Applying ASN rotamer (chi angles: -65.2 -48.5) to mutadedModel #3/Gc ASN 140
> color #3/Gc:140 yellow
> swapaa #3/Gc:141 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 141 to ALA
> color #3/Gc:141 yellow
> swapaa #3/Gc:143 MET
Using Dunbrack library
mutadedModel #3/Gc GLN 143: phi -77.9, psi 61.0 trans
Applying MET rotamer (chi angles: -73.2 76.9 73.4) to mutadedModel #3/Gc MET
143
> color #3/Gc:143 yellow
> swapaa #3/Gc:144 GLU
Using Dunbrack library
mutadedModel #3/Gc THR 144: phi -83.9, psi 168.0 trans
Applying GLU rotamer (chi angles: 60.1 85.8 19.8) to mutadedModel #3/Gc GLU
144
> color #3/Gc:144 yellow
> swapaa #3/Gc:145 ASP
Using Dunbrack library
mutadedModel #3/Gc THR 145: phi -71.9, psi -38.4 trans
Applying ASP rotamer (chi angles: 57.8 -16.4) to mutadedModel #3/Gc ASP 145
> color #3/Gc:145 yellow
> swapaa #3/Gc:147 ASP
Using Dunbrack library
mutadedModel #3/Gc ALA 147: phi -67.2, psi -35.4 trans
Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/Gc ASP 147
> color #3/Gc:147 yellow
> swapaa #3/Gc:149 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 149: phi -63.7, psi -42.4 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 149
> color #3/Gc:149 yellow
> swapaa #3/Gc:153 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 153 to ALA
> color #3/Gc:153 yellow
> swapaa #3/Gc:155 VAL
Using Dunbrack library
mutadedModel #3/Gc LEU 155: phi -63.9, psi -37.4 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 155
> color #3/Gc:155 yellow
> swapaa #3/Gc:156 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 156: phi -67.5, psi -36.8 trans
Applying HIS rotamer (chi angles: -70.4 82.5) to mutadedModel #3/Gc HIS 156
> color #3/Gc:156 yellow
> swapaa #3/Gc:157 GLN
Using Dunbrack library
mutadedModel #3/Gc LYS 157: phi -62.4, psi -39.1 trans
Applying GLN rotamer (chi angles: -69.8 176.6 64.1) to mutadedModel #3/Gc GLN
157
> color #3/Gc:157 yellow
> swapaa #3/Gc:158 ASP
Using Dunbrack library
mutadedModel #3/Gc ALA 158: phi -64.8, psi -37.9 trans
Applying ASP rotamer (chi angles: -173.6 64.2) to mutadedModel #3/Gc ASP 158
> color #3/Gc:158 yellow
> swapaa #3/Gc:160 HIS
Using Dunbrack library
mutadedModel #3/Gc ASN 160: phi -78.6, psi -39.8 trans
Applying HIS rotamer (chi angles: -69.4 82.0) to mutadedModel #3/Gc HIS 160
> color #3/Gc:160 yellow
> swapaa #3/Gc:166 PRO
Using Dunbrack library
mutadedModel #3/Gc SER 166: phi -85.6, psi -24.7 trans
Applying PRO rotamer (chi angles: 31.2 -36.1) to mutadedModel #3/Gc PRO 166
> color #3/Gc:166 yellow
> swapaa #3/Gc:167 ASP
Using Dunbrack library
mutadedModel #3/Gc ASN 167: phi -79.9, psi -40.5 trans
Applying ASP rotamer (chi angles: -68.4 76.3) to mutadedModel #3/Gc ASP 167
> color #3/Gc:167 yellow
> swapaa #3/Gc:171 MET
Using Dunbrack library
mutadedModel #3/Gc GLN 171: phi -74.6, psi -35.0 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/Gc MET
171
> color #3/Gc:171 yellow
> swapaa #3/Gc:173 ASN
Using Dunbrack library
mutadedModel #3/Gc LEU 173: phi -64.9, psi -31.3 trans
Applying ASN rotamer (chi angles: -73.3 -79.2) to mutadedModel #3/Gc ASN 173
> color #3/Gc:173 yellow
> swapaa #3/Gc:175 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 175: phi -63.6, psi -32.9 trans
Applying HIS rotamer (chi angles: -70.6 82.4) to mutadedModel #3/Gc HIS 175
> color #3/Gc:175 yellow
> swapaa #3/Gc:177 CYS
Using Dunbrack library
mutadedModel #3/Gc SER 177: phi -72.6, psi -37.6 trans
Applying CYS rotamer (chi angles: -175.1) to mutadedModel #3/Gc CYS 177
> color #3/Gc:177 yellow
> swapaa #3/Gc:178 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 178 to ALA
> color #3/Gc:178 yellow
> swapaa #3/Gc:180 ASP
Using Dunbrack library
mutadedModel #3/Gc ASN 180: phi -93.7, psi 55.4 trans
Applying ASP rotamer (chi angles: -170.7 13.3) to mutadedModel #3/Gc ASP 180
> color #3/Gc:180 yellow
> swapaa #3/Gc:181 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 181: phi -117.1, psi -0.1 trans
Applying SER rotamer (chi angles: -62.6) to mutadedModel #3/Gc SER 181
> color #3/Gc:181 yellow
> swapaa #3/Gc:182 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 182: phi -99.3, psi 151.5 trans
Applying THR rotamer (chi angles: 61.6) to mutadedModel #3/Gc THR 182
> color #3/Gc:182 yellow
> swapaa #3/Gc:186 VAL
Using Dunbrack library
mutadedModel #3/Gc PRO 186: phi -62.3, psi -123.7 trans
Applying VAL rotamer (chi angles: -61.6) to mutadedModel #3/Gc VAL 186
> color #3/Gc:186 yellow
> swapaa #3/Gc:188 THR
Using Dunbrack library
mutadedModel #3/Gc LEU 188: phi -81.9, psi 155.8 trans
Applying THR rotamer (chi angles: -171.6) to mutadedModel #3/Gc THR 188
> color #3/Gc:188 yellow
> swapaa #3/Gc:191 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 191: phi -148.0, psi 35.7 trans
Applying TYR rotamer (chi angles: -62.0 75.3) to mutadedModel #3/Gc TYR 191
> color #3/Gc:191 yellow
> swapaa #3/Gc:193 THR
Using Dunbrack library
mutadedModel #3/Gc SER 193: phi -65.3, psi 153.1 trans
Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/Gc THR 193
> color #3/Gc:193 yellow
> swapaa #3/Gc:194 GLU
Using Dunbrack library
mutadedModel #3/Gc ALA 194: phi -65.7, psi -42.0 trans
Applying GLU rotamer (chi angles: -66.4 80.3 9.3) to mutadedModel #3/Gc GLU
194
> color #3/Gc:194 yellow
> swapaa #3/Gc:198 LYS
Using Dunbrack library
mutadedModel #3/Gc PRO 198: phi -50.6, psi -16.1 trans
Applying LYS rotamer (chi angles: -71.1 -177.2 175.0 65.8) to mutadedModel
#3/Gc LYS 198
> color #3/Gc:198 yellow
> swapaa #3/Gc:199 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 199: phi -101.7, psi 3.2 trans
Applying LYS rotamer (chi angles: -63.4 -175.4 -70.1 -66.8) to mutadedModel
#3/Gc LYS 199
> color #3/Gc:199 yellow
> swapaa #3/Gc:201 THR
Using Dunbrack library
mutadedModel #3/Gc SER 201: phi -114.0, psi -168.4 trans
Applying THR rotamer (chi angles: -169.4) to mutadedModel #3/Gc THR 201
> color #3/Gc:201 yellow
> swapaa #3/Gc:203 GLU
Using Dunbrack library
mutadedModel #3/Gc SER 203: phi -77.8, psi -40.5 trans
Applying GLU rotamer (chi angles: -66.5 80.5 9.8) to mutadedModel #3/Gc GLU
203
> color #3/Gc:203 yellow
> swapaa #3/Gc:204 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 204: phi -61.7, psi -39.2 trans
Applying GLN rotamer (chi angles: -175.4 64.8 78.1) to mutadedModel #3/Gc GLN
204
> color #3/Gc:204 yellow
> swapaa #3/Gc:205 MET
Using Dunbrack library
mutadedModel #3/Gc GLU 205: phi -67.3, psi -33.1 trans
Applying MET rotamer (chi angles: -68.5 177.3 70.7) to mutadedModel #3/Gc MET
205
> color #3/Gc:205 yellow
> swapaa #3/Gc:211 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 211: phi -59.0, psi -36.2 trans
Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/Gc SER 211
> color #3/Gc:211 yellow
> swapaa #3/Gc:213 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 213: phi -84.7, psi 117.3 trans
Applying LEU rotamer (chi angles: -179.2 64.3) to mutadedModel #3/Gc LEU 213
> color #3/Gc:213 yellow
> swapaa #3/Gc:214 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 214 to ALA
> color #3/Gc:214 yellow
> swapaa #3/Gc:215 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ALA 215 to GLY
> color #3/Gc:215 yellow
> swapaa #3/Gc:218 VAL
Using Dunbrack library
mutadedModel #3/Gc THR 218: phi -88.4, psi 130.5 trans
Applying VAL rotamer (chi angles: 176.8) to mutadedModel #3/Gc VAL 218
> color #3/Gc:218 yellow
> swapaa #3/Gc:219 ILE
Using Dunbrack library
mutadedModel #3/Gc VAL 219: phi -116.8, psi 127.6 trans
Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/Gc ILE 219
> color #3/Gc:219 yellow
> swapaa #3/Gc:220 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 220: phi -99.2, psi 127.2 trans
Applying VAL rotamer (chi angles: 177.4) to mutadedModel #3/Gc VAL 220
> color #3/Gc:220 yellow
> swapaa #3/Gc:221 VAL
Using Dunbrack library
mutadedModel #3/Gc THR 221: phi -130.0, psi 145.3 trans
Applying VAL rotamer (chi angles: -62.5) to mutadedModel #3/Gc VAL 221
> color #3/Gc:221 yellow
> swapaa #3/Gc:227 ASP
Using Dunbrack library
mutadedModel #3/Gc SER 227: phi -80.7, psi 156.6 trans
Applying ASP rotamer (chi angles: -166.3 -0.6) to mutadedModel #3/Gc ASP 227
> color #3/Gc:227 yellow
> swapaa #3/Gc:228 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 228: phi -84.9, psi -34.9 trans
Applying HIS rotamer (chi angles: -174.6 -172.6) to mutadedModel #3/Gc HIS 228
> color #3/Gc:228 yellow
> swapaa #3/Gc:229 THR
Using Dunbrack library
mutadedModel #3/Gc GLU 229: phi -65.3, psi -45.7 trans
Applying THR rotamer (chi angles: 58.3) to mutadedModel #3/Gc THR 229
> color #3/Gc:229 yellow
> swapaa #3/Gc:230 VAL
Using Dunbrack library
mutadedModel #3/Gc GLU 230: phi -62.6, psi -43.0 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 230
> color #3/Gc:230 yellow
> swapaa #3/Gc:233 LYS
Using Dunbrack library
mutadedModel #3/Gc LEU 233: phi -68.4, psi -31.5 trans
Applying LYS rotamer (chi angles: -176.9 63.6 167.9 61.8) to mutadedModel
#3/Gc LYS 233
> color #3/Gc:233 yellow
> swapaa #3/Gc:237 SER
Using Dunbrack library
mutadedModel #3/Gc ASP 237: phi -73.9, psi -92.2 trans
Applying SER rotamer (chi angles: -64.9) to mutadedModel #3/Gc SER 237
> color #3/Gc:237 yellow
> swapaa #3/Gc:238 TYR
Using Dunbrack library
mutadedModel #3/Gc GLY 238: phi -62.9, psi 1.0 trans
Applying TYR rotamer (chi angles: -70.2 104.8) to mutadedModel #3/Gc TYR 238
> color #3/Gc:238 yellow
> swapaa #3/Gc:239 PHE
Using Dunbrack library
mutadedModel #3/Gc GLY 239: phi -32.8, psi -18.9 trans
Applying PHE rotamer (chi angles: -72.0 -16.2) to mutadedModel #3/Gc PHE 239
> color #3/Gc:239 yellow
> swapaa #3/Gc:241 ASP
Using Dunbrack library
mutadedModel #3/Gc THR 241: phi -119.7, psi 8.8 trans
Applying ASP rotamer (chi angles: 63.3 -3.2) to mutadedModel #3/Gc ASP 241
> color #3/Gc:241 yellow
> swapaa #3/Gc:242 LEU
Using Dunbrack library
mutadedModel #3/Gc VAL 242: phi -83.2, psi 135.1 trans
Applying LEU rotamer (chi angles: -62.9 175.6) to mutadedModel #3/Gc LEU 242
> color #3/Gc:242 yellow
> swapaa #3/Gc:245 THR
Using Dunbrack library
mutadedModel #3/Gc SER 245: phi -127.2, psi 150.3 trans
Applying THR rotamer (chi angles: 62.1) to mutadedModel #3/Gc THR 245
> color #3/Gc:245 yellow
> swapaa #3/Gc:247 GLU
Using Dunbrack library
mutadedModel #3/Gc GLY 247: phi -55.4, psi -48.9 trans
Applying GLU rotamer (chi angles: -67.4 80.8 1.3) to mutadedModel #3/Gc GLU
247
> color #3/Gc:247 yellow
> swapaa #3/Gc:248 LYS
Using Dunbrack library
mutadedModel #3/Gc ASP 248: phi -98.0, psi 3.7 trans
Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel
#3/Gc LYS 248
> color #3/Gc:248 yellow
> swapaa #3/Gc:249 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 249 to ALA
> color #3/Gc:249 yellow
> swapaa #3/Gc:250 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc PRO 250 to ALA
> color #3/Gc:250 yellow
> swapaa #3/Gc:251 ILE
Using Dunbrack library
mutadedModel #3/Gc VAL 251: phi -69.0, psi 94.3 trans
Applying ILE rotamer (chi angles: -60.7 170.6) to mutadedModel #3/Gc ILE 251
> color #3/Gc:251 yellow
> swapaa #3/Gc:252 VAL
Using Dunbrack library
mutadedModel #3/Gc GLY 252: phi -95.6, psi -19.2 trans
Applying VAL rotamer (chi angles: -60.2) to mutadedModel #3/Gc VAL 252
> color #3/Gc:252 yellow
> swapaa #3/Gc:253 MET
Using Dunbrack library
mutadedModel #3/Gc ARG 253: phi -172.9, psi 129.8 trans
Applying MET rotamer (chi angles: -178.5 176.3 71.4) to mutadedModel #3/Gc MET
253
> color #3/Gc:253 yellow
> swapaa #3/Gc:256 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 256: phi -83.8, psi 140.2 trans
Applying SER rotamer (chi angles: 62.9) to mutadedModel #3/Gc SER 256
> color #3/Gc:256 yellow
> swapaa #3/Gc:258 TYR
Using Dunbrack library
mutadedModel #3/Gc TRP 258: phi -116.5, psi 126.9 trans
Applying TYR rotamer (chi angles: 178.4 76.7) to mutadedModel #3/Gc TYR 258
> color #3/Gc:258 yellow
> swapaa #3/Gc:259 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 259: phi -123.4, psi 178.1 trans
Applying VAL rotamer (chi angles: -60.8) to mutadedModel #3/Gc VAL 259
> color #3/Gc:259 yellow
> swapaa #3/Gc:262 GLU
Using Dunbrack library
mutadedModel #3/Gc ARG 262: phi none, psi 142.6 trans
Applying GLU rotamer (chi angles: -175.2 179.2 -57.4) to mutadedModel #3/Gc
GLU 262
> color #3/Gc:262 yellow
> swapaa #3/Gc:263 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 263: phi -120.9, psi 131.0 trans
Applying TYR rotamer (chi angles: 178.4 76.7) to mutadedModel #3/Gc TYR 263
> color #3/Gc:263 yellow
> swapaa #3/Gc:266 TRP
Using Dunbrack library
mutadedModel #3/Gc ARG 266: phi -84.4, psi 108.4 trans
Applying TRP rotamer (chi angles: -68.7 73.8) to mutadedModel #3/Gc TRP 266
> color #3/Gc:266 yellow
> swapaa #3/Gc:270 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 270: phi -81.7, psi 128.2 trans
Applying TYR rotamer (chi angles: -179.7 50.3) to mutadedModel #3/Gc TYR 270
> color #3/Gc:270 yellow
> swapaa #3/Gc:272 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 272: phi -128.9, psi 167.6 trans
Applying THR rotamer (chi angles: 65.0) to mutadedModel #3/Gc THR 272
> color #3/Gc:272 yellow
> swapaa #3/Gc:273 VAL
Using Dunbrack library
mutadedModel #3/Gc THR 273: phi -107.1, psi 117.9 trans
Applying VAL rotamer (chi angles: 178.6) to mutadedModel #3/Gc VAL 273
> color #3/Gc:273 yellow
> swapaa #3/Gc:274 ASN
Using Dunbrack library
mutadedModel #3/Gc ASP 274: phi -109.2, psi 126.1 trans
Applying ASN rotamer (chi angles: -65.7 -101.9) to mutadedModel #3/Gc ASN 274
> color #3/Gc:274 yellow
> swapaa #3/Gc:276 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 276 to ALA
> color #3/Gc:276 yellow
> swapaa #3/Gc:277 TRP
Using Dunbrack library
mutadedModel #3/Gc TYR 277: phi -124.2, psi 160.7 trans
Applying TRP rotamer (chi angles: 60.5 -69.4) to mutadedModel #3/Gc TRP 277
> color #3/Gc:277 yellow
> swapaa #3/Gc:279 PHE
Using Dunbrack library
mutadedModel #3/Gc TYR 279: phi -87.4, psi none trans
Applying PHE rotamer (chi angles: 63.0 90.4) to mutadedModel #3/Gc PHE 279
> color #3/Gc:279 yellow
> swapaa #3/Gc:282 CYS
Using Dunbrack library
mutadedModel #3/Gc THR 282: phi none, psi 159.6 trans
Applying CYS rotamer (chi angles: -64.3) to mutadedModel #3/Gc CYS 282
> color #3/Gc:282 yellow
> swapaa #3/Gc:284 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc PRO 284 to ALA
> color #3/Gc:284 yellow
> swapaa #3/Gc:285 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 285 to ALA
> color #3/Gc:285 yellow
> swapaa #3/Gc:286 CYS
Using Dunbrack library
mutadedModel #3/Gc THR 286: phi -102.9, psi 137.8 trans
Applying CYS rotamer (chi angles: -179.9) to mutadedModel #3/Gc CYS 286
> color #3/Gc:286 yellow
> swapaa #3/Gc:287 GLU
Using Dunbrack library
mutadedModel #3/Gc PRO 287: phi -65.8, psi -53.2 trans
Applying GLU rotamer (chi angles: -69.0 -65.0 -48.1) to mutadedModel #3/Gc GLU
287
> color #3/Gc:287 yellow
> swapaa #3/Gc:288 ASP
Using Dunbrack library
mutadedModel #3/Gc GLY 288: phi -46.7, psi 34.8 trans
Applying ASP rotamer (chi angles: 62.8 -0.3) to mutadedModel #3/Gc ASP 288
> color #3/Gc:288 yellow
> swapaa #3/Gc:289 ASN
Using Dunbrack library
mutadedModel #3/Gc LEU 289: phi -92.7, psi -4.7 trans
Applying ASN rotamer (chi angles: 65.2 -4.5) to mutadedModel #3/Gc ASN 289
> color #3/Gc:289 yellow
> swapaa #3/Gc:290 VAL
Using Dunbrack library
mutadedModel #3/Gc LEU 290: phi -86.5, psi -36.6 trans
Applying VAL rotamer (chi angles: 174.9) to mutadedModel #3/Gc VAL 290
> color #3/Gc:290 yellow
> swapaa #3/Gc:293 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 293 to ALA
> color #3/Gc:293 yellow
> swapaa #3/Gc:296 CYS
Using Dunbrack library
mutadedModel #3/Gc SER 296: phi -78.7, psi -20.9 trans
Applying CYS rotamer (chi angles: 67.9) to mutadedModel #3/Gc CYS 296
> color #3/Gc:296 yellow
> swapaa #3/Gc:297 GLU
Using Dunbrack library
mutadedModel #3/Gc THR 297: phi -85.4, psi -19.6 trans
Applying GLU rotamer (chi angles: -63.4 -65.0 -40.1) to mutadedModel #3/Gc GLU
297
> color #3/Gc:297 yellow
> swapaa #3/Gc:299 PRO
Using Dunbrack library
mutadedModel #3/Gc THR 299: phi -150.8, psi 14.5 trans
Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/Gc PRO 299
> color #3/Gc:299 yellow
> swapaa #3/Gc:302 PHE
Using Dunbrack library
mutadedModel #3/Gc GLN 302: phi -149.1, psi 121.5 trans
Applying PHE rotamer (chi angles: -176.4 133.0) to mutadedModel #3/Gc PHE 302
> color #3/Gc:302 yellow
> swapaa #3/Gc:304 ARG
Using Dunbrack library
mutadedModel #3/Gc PHE 304: phi -9.6, psi -0.9 trans
Applying ARG rotamer (chi angles: 66.5 92.9 71.6 -112.0) to mutadedModel #3/Gc
ARG 304
> color #3/Gc:304 yellow
> swapaa #3/Gc:305 SER
Using Dunbrack library
mutadedModel #3/Gc THR 305: phi -97.3, psi -16.7 trans
Applying SER rotamer (chi angles: 64.1) to mutadedModel #3/Gc SER 305
> color #3/Gc:305 yellow
> swapaa #3/Gc:306 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 306: phi -82.1, psi 32.2 trans
Applying GLN rotamer (chi angles: -65.7 178.7 65.3) to mutadedModel #3/Gc GLN
306
> color #3/Gc:306 yellow
> swapaa #3/Gc:307 HIS
Using Dunbrack library
mutadedModel #3/Gc ARG 307: phi -34.7, psi 155.1 trans
Applying HIS rotamer (chi angles: -174.4 -78.4) to mutadedModel #3/Gc HIS 307
> color #3/Gc:307 yellow
> swapaa #3/Gc:308 GLU
Using Dunbrack library
mutadedModel #3/Gc THR 308: phi -16.4, psi -37.3 trans
Applying GLU rotamer (chi angles: -176.9 177.2 58.2) to mutadedModel #3/Gc GLU
308
> color #3/Gc:308 yellow
> swapaa #3/Gc:309 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 309: phi -61.7, psi 48.7 trans
Applying LEU rotamer (chi angles: 70.6 164.8) to mutadedModel #3/Gc LEU 309
> color #3/Gc:309 yellow
> swapaa #3/Gc:310 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc THR 310 to GLY
> color #3/Gc:310 yellow
> swapaa #3/Gc:311 GLN
Using Dunbrack library
mutadedModel #3/Gc SER 311: phi -104.6, psi 113.8 trans
Applying GLN rotamer (chi angles: -177.4 178.3 -168.0) to mutadedModel #3/Gc
GLN 311
> color #3/Gc:311 yellow
> swapaa #3/Gc:312 HIS
Using Dunbrack library
mutadedModel #3/Gc GLY 312: phi 179.2, psi none trans
Applying HIS rotamer (chi angles: 65.4 -79.5) to mutadedModel #3/Gc HIS 312
> color #3/Gc:312 yellow
> swapaa #3/Gc:314 MET
Using Dunbrack library
mutadedModel #3/Gc GLY 314: phi none, psi -89.9 trans
Applying MET rotamer (chi angles: -77.7 70.6 -98.9) to mutadedModel #3/Gc MET
314
> color #3/Gc:314 yellow
> swapaa #3/Gc:316 ARG
Using Dunbrack library
mutadedModel #3/Gc ALA 316: phi -44.3, psi -11.2 trans
Applying ARG rotamer (chi angles: -85.0 70.0 178.2 175.1) to mutadedModel
#3/Gc ARG 316
> color #3/Gc:316 yellow
> swapaa #3/Gc:317 VAL
Using Dunbrack library
mutadedModel #3/Gc PHE 317: phi -81.6, psi -8.9 trans
Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/Gc VAL 317
> color #3/Gc:317 yellow
> swapaa #3/Gc:318 LEU
Using Dunbrack library
mutadedModel #3/Gc HIS 318: phi -81.4, psi -25.5 trans
Applying LEU rotamer (chi angles: 70.0 84.1) to mutadedModel #3/Gc LEU 318
> color #3/Gc:318 yellow
> swapaa #3/Gc:319 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 319: phi -83.9, psi -20.7 trans
Applying LYS rotamer (chi angles: 35.8 76.5 174.7 -88.1) to mutadedModel #3/Gc
LYS 319
> color #3/Gc:319 yellow
> swapaa #3/Gc:321 PHE
Using Dunbrack library
mutadedModel #3/Gc LEU 321: phi -70.5, psi -33.8 trans
Applying PHE rotamer (chi angles: -73.1 132.8) to mutadedModel #3/Gc PHE 321
> color #3/Gc:321 yellow
> swapaa #3/Gc:322 SER
Using Dunbrack library
mutadedModel #3/Gc LYS 322: phi -115.3, psi -22.4 trans
Applying SER rotamer (chi angles: 63.0) to mutadedModel #3/Gc SER 322
> color #3/Gc:322 yellow
> swapaa #3/Gc:326 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 326: phi none, psi 74.6 trans
Applying HIS rotamer (chi angles: -178.4 71.5) to mutadedModel #3/Gc HIS 326
> color #3/Gc:326 yellow
> swapaa #3/Gc:327 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 327: phi -116.9, psi 33.9 trans
Applying SER rotamer (chi angles: 57.9) to mutadedModel #3/Gc SER 327
> color #3/Gc:327 yellow
> swapaa #3/Gc:328 THR
Using Dunbrack library
mutadedModel #3/Gc GLY 328: phi -177.0, psi 135.7 trans
Applying THR rotamer (chi angles: -176.3) to mutadedModel #3/Gc THR 328
> color #3/Gc:328 yellow
> swapaa #3/Gc:330 THR
Using Dunbrack library
mutadedModel #3/Gc ARG 330: phi 47.5, psi 13.3 trans
Applying THR rotamer (chi angles: 69.5) to mutadedModel #3/Gc THR 330
> color #3/Gc:330 yellow
> swapaa #3/Gc:331 ASN
Using Dunbrack library
mutadedModel #3/Gc LEU 331: phi -93.6, psi 138.4 trans
Applying ASN rotamer (chi angles: -67.0 -97.3) to mutadedModel #3/Gc ASN 331
> color #3/Gc:331 yellow
> swapaa #3/Gc:332 THR
Using Dunbrack library
mutadedModel #3/Gc SER 332: phi -136.0, psi 80.6 trans
Applying THR rotamer (chi angles: 56.4) to mutadedModel #3/Gc THR 332
> color #3/Gc:332 yellow
> swapaa #3/Gc:333 HIS
Using Dunbrack library
mutadedModel #3/Gc GLY 333: phi -83.4, psi 27.9 trans
Applying HIS rotamer (chi angles: -65.6 138.2) to mutadedModel #3/Gc HIS 333
> color #3/Gc:333 yellow
> swapaa #3/Gc:334 PHE
Using Dunbrack library
mutadedModel #3/Gc TYR 334: phi -98.2, psi 64.3 cis
Applying PHE rotamer (chi angles: -63.9 97.4) to mutadedModel #3/Gc PHE 334
> color #3/Gc:334 yellow
> swapaa #3/Gc:336 GLU
Using Dunbrack library
mutadedModel #3/Gc SER 336: phi -70.7, psi -13.1 trans
Applying GLU rotamer (chi angles: 67.2 -85.3 17.8) to mutadedModel #3/Gc GLU
336
> color #3/Gc:336 yellow
> swapaa #3/Gc:337 LYS
Using Dunbrack library
mutadedModel #3/Gc GLU 337: phi -84.5, psi 5.9 trans
Applying LYS rotamer (chi angles: -81.4 76.8 69.6 -179.2) to mutadedModel
#3/Gc LYS 337
> color #3/Gc:337 yellow
> swapaa #3/Gc:338 SER
Using Dunbrack library
mutadedModel #3/Gc VAL 338: phi -101.4, psi 29.9 trans
Applying SER rotamer (chi angles: 60.6) to mutadedModel #3/Gc SER 338
> color #3/Gc:338 yellow
> swapaa #3/Gc:339 ILE
Using Dunbrack library
mutadedModel #3/Gc LEU 339: phi -53.1, psi 135.1 trans
Applying ILE rotamer (chi angles: -169.6 167.5) to mutadedModel #3/Gc ILE 339
> color #3/Gc:339 yellow
> swapaa #3/Gc:340 GLU
Using Dunbrack library
mutadedModel #3/Gc VAL 340: phi -119.2, psi -26.7 trans
Applying GLU rotamer (chi angles: -63.9 179.2 -33.5) to mutadedModel #3/Gc GLU
340
> color #3/Gc:340 yellow
> swapaa #3/Gc:341 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 341: phi -168.1, psi 166.2 trans
Applying THR rotamer (chi angles: -170.7) to mutadedModel #3/Gc THR 341
> color #3/Gc:341 yellow
> swapaa #3/Gc:343 ASN
Using Dunbrack library
mutadedModel #3/Gc LEU 343: phi -137.6, psi 128.7 trans
Applying ASN rotamer (chi angles: -65.7 -73.4) to mutadedModel #3/Gc ASN 343
> color #3/Gc:343 yellow
> swapaa #3/Gc:347 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 347: phi -100.7, psi 100.2 trans
Applying HIS rotamer (chi angles: -63.7 -77.7) to mutadedModel #3/Gc HIS 347
> color #3/Gc:347 yellow
> swapaa #3/Gc:348 SER
Using Dunbrack library
mutadedModel #3/Gc THR 348: phi -96.9, psi 135.6 trans
Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/Gc SER 348
> color #3/Gc:348 yellow
> swapaa #3/Gc:349 TYR
Using Dunbrack library
mutadedModel #3/Gc HIS 349: phi -111.3, psi 172.2 trans
Applying TYR rotamer (chi angles: -64.7 89.9) to mutadedModel #3/Gc TYR 349
> color #3/Gc:349 yellow
> swapaa #3/Gc:350 LYS
Using Dunbrack library
mutadedModel #3/Gc GLN 350: phi -79.3, psi -36.3 trans
Applying LYS rotamer (chi angles: -178.3 66.3 175.9 178.5) to mutadedModel
#3/Gc LYS 350
> color #3/Gc:350 yellow
> swapaa #3/Gc:351 ASP
Using Dunbrack library
mutadedModel #3/Gc ASN 351: phi -96.4, psi -29.4 trans
Applying ASP rotamer (chi angles: -63.6 -78.9) to mutadedModel #3/Gc ASP 351
> color #3/Gc:351 yellow
> swapaa #3/Gc:352 VAL
Using Dunbrack library
mutadedModel #3/Gc ARG 352: phi -154.0, psi 114.0 trans
Applying VAL rotamer (chi angles: 59.5) to mutadedModel #3/Gc VAL 352
> color #3/Gc:352 yellow
> swapaa #3/Gc:354 LEU
Using Dunbrack library
mutadedModel #3/Gc HIS 354: phi -109.7, psi 130.3 trans
Applying LEU rotamer (chi angles: -59.7 176.6) to mutadedModel #3/Gc LEU 354
> color #3/Gc:354 yellow
> swapaa #3/Gc:355 CYS
Using Dunbrack library
mutadedModel #3/Gc LEU 355: phi -113.2, psi 150.6 trans
Applying CYS rotamer (chi angles: -62.4) to mutadedModel #3/Gc CYS 355
> color #3/Gc:355 yellow
> swapaa #3/Gc:357 MET
Using Dunbrack library
mutadedModel #3/Gc PHE 357: phi -36.6, psi 138.4 trans
Applying MET rotamer (chi angles: -68.0 177.4 70.2) to mutadedModel #3/Gc MET
357
> color #3/Gc:357 yellow
> swapaa #3/Gc:358 TYR
Using Dunbrack library
mutadedModel #3/Gc PHE 358: phi -111.1, psi 127.1 trans
Applying TYR rotamer (chi angles: 178.0 52.1) to mutadedModel #3/Gc TYR 358
> color #3/Gc:358 yellow
> swapaa #3/Gc:363 GLN
Using Dunbrack library
mutadedModel #3/Gc PHE 363: phi -88.3, psi 106.6 trans
Applying GLN rotamer (chi angles: 179.8 66.6 55.5) to mutadedModel #3/Gc GLN
363
> color #3/Gc:363 yellow
> swapaa #3/Gc:365 MET
Using Dunbrack library
mutadedModel #3/Gc GLN 365: phi -104.3, psi 142.0 trans
Applying MET rotamer (chi angles: 61.0 80.7 70.5) to mutadedModel #3/Gc MET
365
> color #3/Gc:365 yellow
> swapaa #3/Gc:366 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 366 to GLY
> color #3/Gc:366 yellow
> swapaa #3/Gc:370 ASP
Using Dunbrack library
mutadedModel #3/Gc ALA 370: phi -117.0, psi 161.9 trans
Applying ASP rotamer (chi angles: -166.0 -0.2) to mutadedModel #3/Gc ASP 370
> color #3/Gc:370 yellow
> swapaa #3/Gc:371 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ALA 371 to GLY
> color #3/Gc:371 yellow
> swapaa #3/Gc:372 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc ALA 372 to GLY
> color #3/Gc:372 yellow
> swapaa #3/Gc:373 VAL
Using Dunbrack library
mutadedModel #3/Gc ASN 373: phi -77.8, psi -32.0 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/Gc VAL 373
> color #3/Gc:373 yellow
> swapaa #3/Gc:375 VAL
Using Dunbrack library
mutadedModel #3/Gc ASN 375: phi -89.2, psi -37.5 trans
Applying VAL rotamer (chi angles: 174.9) to mutadedModel #3/Gc VAL 375
> color #3/Gc:375 yellow
> swapaa #3/Gc:377 VAL
Using Dunbrack library
mutadedModel #3/Gc ILE 377: phi -79.0, psi -44.1 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/Gc VAL 377
> color #3/Gc:377 yellow
> swapaa #3/Gc:380 TYR
Using Dunbrack library
mutadedModel #3/Gc TRP 380: phi -83.3, psi -21.7 trans
Applying TYR rotamer (chi angles: -172.1 76.2) to mutadedModel #3/Gc TYR 380
> color #3/Gc:380 yellow
> swapaa #3/Gc:381 THR
Using Dunbrack library
mutadedModel #3/Gc CYS 381: phi -70.8, psi -41.9 trans
Applying THR rotamer (chi angles: 59.0) to mutadedModel #3/Gc THR 381
> color #3/Gc:381 yellow
> swapaa #3/Gc:382 ILE
Using Dunbrack library
mutadedModel #3/Gc ASN 382: phi -64.2, psi -34.4 trans
Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/Gc ILE 382
> color #3/Gc:382 yellow
> swapaa #3/Gc:383 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 383 to ALA
> color #3/Gc:383 yellow
> swapaa #3/Gc:385 TRP
Using Dunbrack library
mutadedModel #3/Gc TYR 385: phi -72.4, psi -24.8 trans
Applying TRP rotamer (chi angles: -69.9 82.3) to mutadedModel #3/Gc TRP 385
> color #3/Gc:385 yellow
> swapaa #3/Gc:386 CYS
Using Dunbrack library
mutadedModel #3/Gc ASN 386: phi -77.7, psi -24.7 trans
Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/Gc CYS 386
> color #3/Gc:386 yellow
> swapaa #3/Gc:387 ARG
Using Dunbrack library
mutadedModel #3/Gc LEU 387: phi -75.8, psi -24.2 trans
Applying ARG rotamer (chi angles: -68.3 178.7 -179.9 175.4) to mutadedModel
#3/Gc ARG 387
> color #3/Gc:387 yellow
> swapaa #3/Gc:391 LYS
Using Dunbrack library
mutadedModel #3/Gc GLU 391: phi -92.7, psi -58.9 trans
Applying LYS rotamer (chi angles: -177.6 176.9 -176.1 -65.8) to mutadedModel
#3/Gc LYS 391
> color #3/Gc:391 yellow
> swapaa #3/Gc:392 MET
Using Dunbrack library
mutadedModel #3/Gc GLN 392: phi -158.0, psi 101.1 trans
Applying MET rotamer (chi angles: 54.8 92.3 -116.4) to mutadedModel #3/Gc MET
392
> color #3/Gc:392 yellow
> swapaa #3/Gc:393 LEU
Using Dunbrack library
mutadedModel #3/Gc GLU 393: phi -102.4, psi 108.0 trans
Applying LEU rotamer (chi angles: 178.4 62.2) to mutadedModel #3/Gc LEU 393
> color #3/Gc:393 yellow
> swapaa #3/Gc:396 ASN
Using Dunbrack library
mutadedModel #3/Gc ILE 396: phi -66.3, psi -42.6 trans
Applying ASN rotamer (chi angles: 61.9 -6.4) to mutadedModel #3/Gc ASN 396
> color #3/Gc:396 yellow
> swapaa #3/Gc:397 GLU
Using Dunbrack library
mutadedModel #3/Gc LEU 397: phi -66.3, psi -37.7 trans
Applying GLU rotamer (chi angles: -177.3 63.2 19.3) to mutadedModel #3/Gc GLU
397
> color #3/Gc:397 yellow
> swapaa #3/Gc:398 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 398: phi -72.0, psi -34.6 trans
Applying LEU rotamer (chi angles: -174.3 58.9) to mutadedModel #3/Gc LEU 398
> color #3/Gc:398 yellow
> swapaa #3/Gc:400 GLN
Using Dunbrack library
mutadedModel #3/Gc ARG 400: phi -73.9, psi -38.4 trans
Applying GLN rotamer (chi angles: -69.0 176.9 -24.5) to mutadedModel #3/Gc GLN
400
> color #3/Gc:400 yellow
> swapaa #3/Gc:401 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 401 to ALA
> color #3/Gc:401 yellow
> swapaa #3/Gc:402 LYS
Using Dunbrack library
mutadedModel #3/Gc GLU 402: phi -61.2, psi -35.3 trans
Applying LYS rotamer (chi angles: -70.5 -179.1 -177.8 -64.9) to mutadedModel
#3/Gc LYS 402
> color #3/Gc:402 yellow
> swapaa #3/Gc:403 VAL
Using Dunbrack library
mutadedModel #3/Gc LEU 403: phi -66.4, psi -50.4 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/Gc VAL 403
> color #3/Gc:403 yellow
> swapaa #3/Gc:405 MET
Using Dunbrack library
mutadedModel #3/Gc LYS 405: phi -69.4, psi -49.4 trans
Applying MET rotamer (chi angles: -176.4 177.0 178.1) to mutadedModel #3/Gc
MET 405
> color #3/Gc:405 yellow
> swapaa #3/Gc:406 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 406: phi -62.8, psi -34.8 trans
Applying LYS rotamer (chi angles: -62.7 -76.1 85.2 173.1) to mutadedModel
#3/Gc LYS 406
> color #3/Gc:406 yellow
> swapaa #3/Gc:407 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 407 to ALA
> color #3/Gc:407 yellow
> swapaa #3/Gc:408 GLN
Using Dunbrack library
mutadedModel #3/Gc PHE 408: phi -79.7, psi -11.8 trans
Applying GLN rotamer (chi angles: -66.1 178.6 126.9) to mutadedModel #3/Gc GLN
408
> color #3/Gc:408 yellow
> swapaa #3/Gc:410 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 410: phi -71.7, psi -47.4 trans
Applying LEU rotamer (chi angles: -68.8 172.0) to mutadedModel #3/Gc LEU 410
> color #3/Gc:410 yellow
> swapaa #3/Gc:411 PHE
Using Dunbrack library
mutadedModel #3/Gc TYR 411: phi -71.2, psi -19.2 trans
Applying PHE rotamer (chi angles: -72.3 -17.3) to mutadedModel #3/Gc PHE 411
> color #3/Gc:411 yellow
> swapaa #3/Gc:412 ASN
Using Dunbrack library
mutadedModel #3/Gc LYS 412: phi -78.9, psi -22.5 trans
Applying ASN rotamer (chi angles: -169.1 173.6) to mutadedModel #3/Gc ASN 412
> color #3/Gc:412 yellow
> swapaa #3/Gc:413 MET
Using Dunbrack library
mutadedModel #3/Gc ARG 413: phi -92.3, psi 8.6 trans
Applying MET rotamer (chi angles: -65.0 177.2 70.0) to mutadedModel #3/Gc MET
413
> color #3/Gc:413 yellow
> swapaa #3/Gc:416 SER
Using Dunbrack library
mutadedModel #3/Gc VAL 416: phi -78.1, psi -37.8 trans
Applying SER rotamer (chi angles: 179.9) to mutadedModel #3/Gc SER 416
> color #3/Gc:416 yellow
> swapaa #3/Gc:417 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc ARG 417 to ALA
> color #3/Gc:417 yellow
> swapaa #3/Gc:418 ASN
Using Dunbrack library
mutadedModel #3/Gc LYS 418: phi -64.2, psi -40.2 trans
Applying ASN rotamer (chi angles: -73.2 -20.5) to mutadedModel #3/Gc ASN 418
> color #3/Gc:418 yellow
> swapaa #3/Gc:419 SER
Using Dunbrack library
mutadedModel #3/Gc THR 419: phi -65.7, psi -42.0 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 419
> color #3/Gc:419 yellow
> swapaa #3/Gc:420 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc GLY 420 to ALA
> color #3/Gc:420 yellow
> swapaa #3/Gc:421 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 421: phi -77.2, psi -35.9 trans
Applying LYS rotamer (chi angles: 64.8 93.8 174.4 178.2) to mutadedModel #3/Gc
LYS 421
> color #3/Gc:421 yellow
> swapaa #3/Gc:422 ASP
Using Dunbrack library
mutadedModel #3/Gc GLU 422: phi -67.2, psi -38.8 trans
Applying ASP rotamer (chi angles: -172.4 63.2) to mutadedModel #3/Gc ASP 422
> color #3/Gc:422 yellow
> swapaa #3/Gc:427 VAL
Using Dunbrack library
mutadedModel #3/Gc LEU 427: phi -78.6, psi -15.1 trans
Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/Gc VAL 427
> color #3/Gc:427 yellow
> swapaa #3/Gc:428 LEU
Using Dunbrack library
mutadedModel #3/Gc ILE 428: phi -88.5, psi -25.4 trans
Applying LEU rotamer (chi angles: -176.9 59.7) to mutadedModel #3/Gc LEU 428
> color #3/Gc:428 yellow
> swapaa #3/Gc:429 HIS
Using Dunbrack library
mutadedModel #3/Gc TYR 429: phi -107.2, psi -21.0 trans
Applying HIS rotamer (chi angles: -63.6 80.5) to mutadedModel #3/Gc HIS 429
> color #3/Gc:429 yellow
> swapaa #3/Gc:431 GLY
Using Dunbrack library
Swapping mutadedModel #3/Gc GLU 431 to GLY
> color #3/Gc:431 yellow
> swapaa #3/Gc:434 VAL
Using Dunbrack library
mutadedModel #3/Gc ASP 434: phi -46.4, psi 97.8 trans
Applying VAL rotamer (chi angles: 177.1) to mutadedModel #3/Gc VAL 434
> color #3/Gc:434 yellow
> swapaa #3/Gc:436 LEU
Using Dunbrack library
mutadedModel #3/Gc MET 436: phi -88.1, psi -28.1 trans
Applying LEU rotamer (chi angles: -176.9 59.7) to mutadedModel #3/Gc LEU 436
> color #3/Gc:436 yellow
> swapaa #3/Gc:437 THR
Using Dunbrack library
mutadedModel #3/Gc PRO 437: phi -63.5, psi -31.4 trans
Applying THR rotamer (chi angles: 59.1) to mutadedModel #3/Gc THR 437
> color #3/Gc:437 yellow
> swapaa #3/Gc:439 MET
Using Dunbrack library
mutadedModel #3/Gc ARG 439: phi -68.4, psi -28.7 trans
Applying MET rotamer (chi angles: -175.1 176.5 178.1) to mutadedModel #3/Gc
MET 439
> color #3/Gc:439 yellow
> swapaa #3/Gc:440 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 440: phi -64.8, psi -38.1 trans
Applying TYR rotamer (chi angles: -72.7 -11.9) to mutadedModel #3/Gc TYR 440
> color #3/Gc:440 yellow
> swapaa #3/Gc:441 ASP
Using Dunbrack library
mutadedModel #3/Gc LYS 441: phi -63.8, psi -39.8 trans
Applying ASP rotamer (chi angles: -71.8 -15.3) to mutadedModel #3/Gc ASP 441
> color #3/Gc:441 yellow
> swapaa #3/Gc:443 ILE
Using Dunbrack library
mutadedModel #3/Gc VAL 443: phi -76.2, psi -31.4 trans
Applying ILE rotamer (chi angles: -61.5 -58.1) to mutadedModel #3/Gc ILE 443
> color #3/Gc:443 yellow
> swapaa #3/Gc:444 ASP
Using Dunbrack library
mutadedModel #3/Gc LYS 444: phi -73.3, psi -20.7 trans
Applying ASP rotamer (chi angles: 60.0 35.9) to mutadedModel #3/Gc ASP 444
> color #3/Gc:444 yellow
> swapaa #3/Gc:446 THR
Using Dunbrack library
mutadedModel #3/Gc VAL 446: phi -81.4, psi 104.3 trans
Applying THR rotamer (chi angles: -59.6) to mutadedModel #3/Gc THR 446
> color #3/Gc:446 yellow
> swapaa #3/Gc:448 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc SER 448 to ALA
> color #3/Gc:448 yellow
> swapaa #3/Gc:449 SER
Using Dunbrack library
mutadedModel #3/Gc ASP 449: phi -66.0, psi -41.9 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/Gc SER 449
> color #3/Gc:449 yellow
> swapaa #3/Gc:450 ASN
Using Dunbrack library
mutadedModel #3/Gc ARG 450: phi -56.1, psi -40.3 trans
Applying ASN rotamer (chi angles: -173.9 29.2) to mutadedModel #3/Gc ASN 450
> color #3/Gc:450 yellow
> swapaa #3/Gc:452 GLN
Using Dunbrack library
mutadedModel #3/Gc LEU 452: phi -60.2, psi -54.5 trans
Applying GLN rotamer (chi angles: -178.7 -179.8 8.5) to mutadedModel #3/Gc GLN
452
> color #3/Gc:452 yellow
> swapaa #3/Gc:454 VAL
Using Dunbrack library
mutadedModel #3/Gc THR 454: phi -60.9, psi -36.2 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/Gc VAL 454
> color #3/Gc:454 yellow
> swapaa #3/Gc:457 HIS
Using Dunbrack library
mutadedModel #3/Gc ARG 457: phi -60.2, psi -57.7 trans
Applying HIS rotamer (chi angles: -71.2 -159.8) to mutadedModel #3/Gc HIS 457
> color #3/Gc:457 yellow
> swapaa #3/Gc:460 TYR
Using Dunbrack library
mutadedModel #3/Gc PHE 460: phi -95.9, psi 79.4 trans
Applying TYR rotamer (chi angles: 63.8 -0.5) to mutadedModel #3/Gc TYR 460
> color #3/Gc:460 yellow
> swapaa #3/Gc:466 TYR
Using Dunbrack library
mutadedModel #3/Gc PHE 466: phi -125.6, psi 140.0 trans
Applying TYR rotamer (chi angles: -62.6 88.5) to mutadedModel #3/Gc TYR 466
> color #3/Gc:466 yellow
> swapaa #3/Gc:467 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 467: phi -129.6, psi 132.2 trans
Applying SER rotamer (chi angles: 177.2) to mutadedModel #3/Gc SER 467
> color #3/Gc:467 yellow
> swapaa #3/Gc:468 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 468: phi -120.6, psi 147.3 trans
Applying TYR rotamer (chi angles: -64.0 88.9) to mutadedModel #3/Gc TYR 468
> color #3/Gc:468 yellow
> swapaa #3/Gc:471 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 471: phi -80.5, psi 87.8 trans
Applying TYR rotamer (chi angles: -173.1 72.3) to mutadedModel #3/Gc TYR 471
> color #3/Gc:471 yellow
> swapaa #3/Gc:474 ALA
Using Dunbrack library
Swapping mutadedModel #3/Gc ASP 474 to ALA
> color #3/Gc:474 yellow
> swapaa #3/Gc:475 ILE
Using Dunbrack library
mutadedModel #3/Gc GLU 475: phi -74.1, psi 141.1 trans
Applying ILE rotamer (chi angles: -64.7 169.9) to mutadedModel #3/Gc ILE 475
> color #3/Gc:475 yellow
> swapaa #3/Gc:478 TYR
Using Dunbrack library
mutadedModel #3/Gc TRP 478: phi -101.0, psi -16.9 trans
Applying TYR rotamer (chi angles: -176.1 76.3) to mutadedModel #3/Gc TYR 478
> color #3/Gc:478 yellow
> swapaa #3/Gc:479 ASP
Using Dunbrack library
mutadedModel #3/Gc CYS 479: phi -71.6, psi -38.7 trans
Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/Gc ASP 479
> color #3/Gc:479 yellow
> swapaa #3/Gc:480 TRP
Using Dunbrack library
mutadedModel #3/Gc ARG 480: phi -74.3, psi -44.3 trans
Applying TRP rotamer (chi angles: -178.6 -99.3) to mutadedModel #3/Gc TRP 480
> color #3/Gc:480 yellow
> swapaa #3/Gc:481 THR
Using Dunbrack library
mutadedModel #3/Gc SER 481: phi -71.7, psi -19.0 trans
Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/Gc THR 481
> color #3/Gc:481 yellow
> swapaa #3/Gc:482 GLN
Using Dunbrack library
mutadedModel #3/Gc MET 482: phi -70.3, psi -16.6 trans
Applying GLN rotamer (chi angles: 68.6 -177.0 -76.6) to mutadedModel #3/Gc GLN
482
> color #3/Gc:482 yellow
> swapaa #3/Gc:483 HIS
Using Dunbrack library
mutadedModel #3/Gc PHE 483: phi -85.4, psi 2.2 trans
Applying HIS rotamer (chi angles: -65.8 81.1) to mutadedModel #3/Gc HIS 483
> color #3/Gc:483 yellow
> swapaa #3/Gc:484 TRP
Using Dunbrack library
mutadedModel #3/Gc TYR 484: phi -87.0, psi -2.7 trans
Applying TRP rotamer (chi angles: -66.6 -16.1) to mutadedModel #3/Gc TRP 484
> color #3/Gc:484 yellow
> swapaa #3/Gc:485 SER
Using Dunbrack library
mutadedModel #3/Gc ALA 485: phi -100.6, psi 23.8 trans
Applying SER rotamer (chi angles: 61.3) to mutadedModel #3/Gc SER 485
> color #3/Gc:485 yellow
> swapaa #3/Gc:486 TYR
Using Dunbrack library
mutadedModel #3/Gc ARG 486: phi -147.3, psi 150.0 trans
Applying TYR rotamer (chi angles: -175.0 79.7) to mutadedModel #3/Gc TYR 486
> color #3/Gc:486 yellow
> swapaa #3/Gc:487 LYS
Using Dunbrack library
mutadedModel #3/Gc ARG 487: phi -100.5, psi 121.4 trans
Applying LYS rotamer (chi angles: -178.1 71.4 -179.6 -63.2) to mutadedModel
#3/Gc LYS 487
> color #3/Gc:487 yellow
> swapaa #3/Gc:490 TYR
Using Dunbrack library
mutadedModel #3/Gc THR 490: phi 0.8, psi none trans
Applying TYR rotamer (chi angles: -67.2 -16.7) to mutadedModel #3/Gc TYR 490
> color #3/Gc:490 yellow
> select #3/A
2003 atoms, 2055 bonds, 1 pseudobond, 254 residues, 2 models selected
> bond #3/A:5@C #3/A:6@N reasonable false
Created 0 bonds
> bond #3/A:6@C #3/A:7@N reasonable false
Created 0 bonds
> bond #3/A:7@C #3/A:8@N reasonable false
Created 0 bonds
> bond #3/A:8@C #3/A:9@N reasonable false
Created 0 bonds
> bond #3/A:9@C #3/A:10@N reasonable false
Created 1 bond
> bond #3/A:124@C #3/A:125@N reasonable false
Created 0 bonds
> bond #3/A:125@C #3/A:126@N reasonable false
Created 0 bonds
> bond #3/A:126@C #3/A:127@N reasonable false
Created 0 bonds
> bond #3/A:127@C #3/A:128@N reasonable false
Created 0 bonds
> bond #3/A:128@C #3/A:129@N reasonable false
Created 0 bonds
> bond #3/A:129@C #3/A:130@N reasonable false
Created 0 bonds
> bond #3/A:130@C #3/A:131@N reasonable false
Created 0 bonds
> bond #3/A:131@C #3/A:132@N reasonable false
Created 0 bonds
> bond #3/A:132@C #3/A:133@N reasonable false
Created 0 bonds
> bond #3/A:133@C #3/A:134@N reasonable false
Created 0 bonds
> bond #3/A:134@C #3/A:135@N reasonable false
Created 0 bonds
> bond #3/A:135@C #3/A:136@N reasonable false
Created 0 bonds
> bond #3/A:136@C #3/A:137@N reasonable false
Created 0 bonds
> bond #3/A:137@C #3/A:138@N reasonable false
Created 0 bonds
> bond #3/A:138@C #3/A:139@N reasonable false
Created 0 bonds
> bond #3/A:139@C #3/A:140@N reasonable false
Created 0 bonds
> bond #3/A:140@C #3/A:141@N reasonable false
Created 0 bonds
> bond #3/A:141@C #3/A:142@N reasonable false
Created 0 bonds
> bond #3/A:142@C #3/A:143@N reasonable false
Created 0 bonds
> bond #3/A:143@C #3/A:144@N reasonable false
Created 0 bonds
> bond #3/A:144@C #3/A:145@N reasonable false
Created 0 bonds
> bond #3/A:145@C #3/A:146@N reasonable false
Created 1 bond
> bond #3/A:171@C #3/A:172@N reasonable false
Created 1 bond
> bond #3/A:46@C #3/A:47@N reasonable false
Created 0 bonds
> bond #3/A:47@C #3/A:48@N reasonable false
Created 0 bonds
> bond #3/A:48@C #3/A:49@N reasonable false
Created 0 bonds
> bond #3/A:49@C #3/A:50@N reasonable false
Created 1 bond
> bond #3/A:50@C #3/A:51@N reasonable false
Created 0 bonds
> bond #3/A:51@C #3/A:52@N reasonable false
Created 0 bonds
> bond #3/A:52@C #3/A:53@N reasonable false
Created 0 bonds
> bond #3/A:53@C #3/A:54@N reasonable false
Created 0 bonds
> bond #3/A:54@C #3/A:55@N reasonable false
Created 0 bonds
> bond #3/A:55@C #3/A:56@N reasonable false
Created 0 bonds
> bond #3/A:56@C #3/A:57@N reasonable false
Created 0 bonds
> bond #3/A:57@C #3/A:58@N reasonable false
Created 0 bonds
> bond #3/A:58@C #3/A:59@N reasonable false
Created 0 bonds
> bond #3/A:59@C #3/A:60@N reasonable false
Created 0 bonds
> bond #3/A:60@C #3/A:61@N reasonable false
Created 0 bonds
> bond #3/A:61@C #3/A:62@N reasonable false
Created 0 bonds
> bond #3/A:62@C #3/A:63@N reasonable false
Created 0 bonds
> bond #3/A:63@C #3/A:64@N reasonable false
Created 0 bonds
> bond #3/A:64@C #3/A:65@N reasonable false
Created 0 bonds
> bond #3/A:65@C #3/A:66@N reasonable false
Created 0 bonds
> bond #3/A:66@C #3/A:67@N reasonable false
Created 0 bonds
> bond #3/A:67@C #3/A:68@N reasonable false
Created 0 bonds
> bond #3/A:68@C #3/A:69@N reasonable false
Created 0 bonds
> bond #3/A:69@C #3/A:70@N reasonable false
Created 0 bonds
> bond #3/A:70@C #3/A:71@N reasonable false
Created 0 bonds
> bond #3/A:71@C #3/A:72@N reasonable false
Created 0 bonds
> bond #3/A:72@C #3/A:73@N reasonable false
Created 0 bonds
> bond #3/A:73@C #3/A:74@N reasonable false
Created 0 bonds
> bond #3/A:74@C #3/A:75@N reasonable false
Created 0 bonds
> bond #3/A:75@C #3/A:76@N reasonable false
Created 0 bonds
> bond #3/A:76@C #3/A:77@N reasonable false
Created 0 bonds
> bond #3/A:77@C #3/A:78@N reasonable false
Created 0 bonds
> bond #3/A:78@C #3/A:79@N reasonable false
Created 0 bonds
> bond #3/A:79@C #3/A:80@N reasonable false
Created 0 bonds
> bond #3/A:80@C #3/A:81@N reasonable false
Created 0 bonds
> bond #3/A:81@C #3/A:82@N reasonable false
Created 0 bonds
> bond #3/A:82@C #3/A:83@N reasonable false
Created 0 bonds
> bond #3/A:83@C #3/A:84@N reasonable false
Created 0 bonds
> bond #3/A:84@C #3/A:85@N reasonable false
Created 0 bonds
> bond #3/A:85@C #3/A:86@N reasonable false
Created 0 bonds
> bond #3/A:86@C #3/A:87@N reasonable false
Created 0 bonds
> bond #3/A:87@C #3/A:88@N reasonable false
Created 0 bonds
> bond #3/A:88@C #3/A:89@N reasonable false
Created 0 bonds
> bond #3/A:89@C #3/A:90@N reasonable false
Created 0 bonds
> bond #3/A:90@C #3/A:91@N reasonable false
Created 0 bonds
> bond #3/A:91@C #3/A:92@N reasonable false
Created 0 bonds
> bond #3/A:92@C #3/A:93@N reasonable false
Created 0 bonds
> bond #3/A:93@C #3/A:94@N reasonable false
Created 0 bonds
> bond #3/A:94@C #3/A:95@N reasonable false
Created 0 bonds
> bond #3/A:95@C #3/A:96@N reasonable false
Created 0 bonds
> bond #3/A:96@C #3/A:97@N reasonable false
Created 0 bonds
> bond #3/A:97@C #3/A:98@N reasonable false
Created 0 bonds
> bond #3/A:98@C #3/A:99@N reasonable false
Created 0 bonds
> bond #3/A:99@C #3/A:100@N reasonable false
Created 0 bonds
> bond #3/A:100@C #3/A:101@N reasonable false
Created 0 bonds
> bond #3/A:101@C #3/A:102@N reasonable false
Created 0 bonds
> bond #3/A:102@C #3/A:103@N reasonable false
Created 0 bonds
> bond #3/A:103@C #3/A:104@N reasonable false
Created 0 bonds
> bond #3/A:104@C #3/A:105@N reasonable false
Created 0 bonds
> bond #3/A:105@C #3/A:106@N reasonable false
Created 0 bonds
> bond #3/A:106@C #3/A:107@N reasonable false
Created 0 bonds
> bond #3/A:107@C #3/A:108@N reasonable false
Created 0 bonds
> bond #3/A:108@C #3/A:109@N reasonable false
Created 0 bonds
> bond #3/A:109@C #3/A:110@N reasonable false
Created 0 bonds
> bond #3/A:110@C #3/A:111@N reasonable false
Created 0 bonds
> bond #3/A:111@C #3/A:112@N reasonable false
Created 0 bonds
> bond #3/A:112@C #3/A:113@N reasonable false
Created 0 bonds
> bond #3/A:113@C #3/A:114@N reasonable false
Created 0 bonds
> bond #3/A:114@C #3/A:115@N reasonable false
Created 0 bonds
> bond #3/A:115@C #3/A:116@N reasonable false
Created 0 bonds
> bond #3/A:116@C #3/A:117@N reasonable false
Created 0 bonds
> bond #3/A:117@C #3/A:118@N reasonable false
Created 0 bonds
> bond #3/A:118@C #3/A:119@N reasonable false
Created 0 bonds
> bond #3/A:119@C #3/A:120@N reasonable false
Created 0 bonds
> bond #3/A:120@C #3/A:121@N reasonable false
Created 0 bonds
> bond #3/A:121@C #3/A:122@N reasonable false
Created 0 bonds
> bond #3/A:122@C #3/A:123@N reasonable false
Created 0 bonds
> bond #3/A:123@C #3/A:124@N reasonable false
Created 1 bond
> bond #3/A:146@C #3/A:147@N reasonable false
Created 0 bonds
> bond #3/A:147@C #3/A:148@N reasonable false
Created 0 bonds
> bond #3/A:148@C #3/A:149@N reasonable false
Created 0 bonds
> bond #3/A:149@C #3/A:150@N reasonable false
Created 0 bonds
> bond #3/A:152@C #3/A:153@N reasonable false
Created 0 bonds
> bond #3/A:153@C #3/A:154@N reasonable false
Created 0 bonds
> bond #3/A:154@C #3/A:155@N reasonable false
Created 0 bonds
> bond #3/A:155@C #3/A:156@N reasonable false
Created 0 bonds
> bond #3/A:156@C #3/A:157@N reasonable false
Created 0 bonds
> bond #3/A:157@C #3/A:158@N reasonable false
Created 0 bonds
> bond #3/A:158@C #3/A:159@N reasonable false
Created 0 bonds
> bond #3/A:159@C #3/A:160@N reasonable false
Created 0 bonds
> bond #3/A:160@C #3/A:161@N reasonable false
Created 0 bonds
> bond #3/A:161@C #3/A:162@N reasonable false
Created 0 bonds
> bond #3/A:162@C #3/A:163@N reasonable false
Created 0 bonds
> bond #3/A:163@C #3/A:164@N reasonable false
Created 0 bonds
> bond #3/A:164@C #3/A:165@N reasonable false
Created 0 bonds
> bond #3/A:165@C #3/A:166@N reasonable false
Created 0 bonds
> bond #3/A:166@C #3/A:167@N reasonable false
Created 0 bonds
> bond #3/A:167@C #3/A:168@N reasonable false
Created 0 bonds
> bond #3/A:168@C #3/A:169@N reasonable false
Created 0 bonds
> bond #3/A:169@C #3/A:170@N reasonable false
Created 0 bonds
> bond #3/A:170@C #3/A:171@N reasonable false
Created 1 bond
> bond #3/A:174@C #3/A:175@N reasonable false
Created 0 bonds
> bond #3/A:175@C #3/A:176@N reasonable false
Created 0 bonds
> bond #3/A:176@C #3/A:177@N reasonable false
Created 0 bonds
> bond #3/A:177@C #3/A:178@N reasonable false
Created 0 bonds
> bond #3/A:178@C #3/A:179@N reasonable false
Created 0 bonds
> bond #3/A:179@C #3/A:180@N reasonable false
Created 0 bonds
> bond #3/A:180@C #3/A:181@N reasonable false
Created 0 bonds
> bond #3/A:181@C #3/A:182@N reasonable false
Created 0 bonds
> bond #3/A:182@C #3/A:183@N reasonable false
Created 0 bonds
> bond #3/A:183@C #3/A:184@N reasonable false
Created 0 bonds
> bond #3/A:184@C #3/A:185@N reasonable false
Created 0 bonds
> bond #3/A:185@C #3/A:186@N reasonable false
Created 0 bonds
> bond #3/A:186@C #3/A:187@N reasonable false
Created 0 bonds
> bond #3/A:187@C #3/A:188@N reasonable false
Created 0 bonds
> bond #3/A:188@C #3/A:189@N reasonable false
Created 0 bonds
> bond #3/A:189@C #3/A:190@N reasonable false
Created 0 bonds
> bond #3/A:190@C #3/A:191@N reasonable false
Created 0 bonds
> bond #3/A:191@C #3/A:192@N reasonable false
Created 0 bonds
> bond #3/A:192@C #3/A:193@N reasonable false
Created 0 bonds
> bond #3/A:193@C #3/A:194@N reasonable false
Created 0 bonds
> bond #3/A:194@C #3/A:195@N reasonable false
Created 0 bonds
> bond #3/A:195@C #3/A:196@N reasonable false
Created 0 bonds
> bond #3/A:196@C #3/A:197@N reasonable false
Created 0 bonds
> bond #3/A:197@C #3/A:198@N reasonable false
Created 0 bonds
> bond #3/A:198@C #3/A:199@N reasonable false
Created 0 bonds
> bond #3/A:199@C #3/A:200@N reasonable false
Created 0 bonds
> bond #3/A:200@C #3/A:201@N reasonable false
Created 0 bonds
> bond #3/A:201@C #3/A:202@N reasonable false
Created 0 bonds
> bond #3/A:202@C #3/A:203@N reasonable false
Created 0 bonds
> bond #3/A:203@C #3/A:204@N reasonable false
Created 0 bonds
> bond #3/A:204@C #3/A:205@N reasonable false
Created 0 bonds
> bond #3/A:205@C #3/A:206@N reasonable false
Created 0 bonds
> bond #3/A:206@C #3/A:207@N reasonable false
Created 0 bonds
> bond #3/A:207@C #3/A:208@N reasonable false
Created 0 bonds
> bond #3/A:208@C #3/A:209@N reasonable false
Created 0 bonds
> bond #3/A:209@C #3/A:210@N reasonable false
Created 0 bonds
> bond #3/A:210@C #3/A:211@N reasonable false
Created 0 bonds
> bond #3/A:211@C #3/A:212@N reasonable false
Created 0 bonds
> bond #3/A:212@C #3/A:213@N reasonable false
Created 0 bonds
> bond #3/A:213@C #3/A:214@N reasonable false
Created 0 bonds
> bond #3/A:214@C #3/A:215@N reasonable false
Created 0 bonds
> bond #3/A:215@C #3/A:216@N reasonable false
Created 0 bonds
> bond #3/A:216@C #3/A:217@N reasonable false
Created 0 bonds
> bond #3/A:217@C #3/A:218@N reasonable false
Created 0 bonds
> bond #3/A:218@C #3/A:219@N reasonable false
Created 0 bonds
> bond #3/A:219@C #3/A:220@N reasonable false
Created 0 bonds
> bond #3/A:220@C #3/A:221@N reasonable false
Created 0 bonds
> bond #3/A:221@C #3/A:222@N reasonable false
Created 0 bonds
> bond #3/A:222@C #3/A:223@N reasonable false
Created 0 bonds
> bond #3/A:223@C #3/A:224@N reasonable false
Created 0 bonds
> bond #3/A:224@C #3/A:225@N reasonable false
Created 0 bonds
> bond #3/A:225@C #3/A:226@N reasonable false
Created 0 bonds
> bond #3/A:226@C #3/A:227@N reasonable false
Created 0 bonds
> bond #3/A:227@C #3/A:228@N reasonable false
Created 0 bonds
> bond #3/A:228@C #3/A:229@N reasonable false
Created 0 bonds
> bond #3/A:229@C #3/A:230@N reasonable false
Created 0 bonds
> bond #3/A:230@C #3/A:231@N reasonable false
Created 0 bonds
> bond #3/A:231@C #3/A:232@N reasonable false
Created 0 bonds
> bond #3/A:232@C #3/A:233@N reasonable false
Created 0 bonds
> bond #3/A:233@C #3/A:234@N reasonable false
Created 0 bonds
> bond #3/A:234@C #3/A:235@N reasonable false
Created 0 bonds
> bond #3/A:235@C #3/A:236@N reasonable false
Created 0 bonds
> bond #3/A:236@C #3/A:237@N reasonable false
Created 0 bonds
> bond #3/A:237@C #3/A:238@N reasonable false
Created 0 bonds
> bond #3/A:238@C #3/A:239@N reasonable false
Created 0 bonds
> bond #3/A:239@C #3/A:240@N reasonable false
Created 0 bonds
> bond #3/A:240@C #3/A:241@N reasonable false
Created 0 bonds
> bond #3/A:241@C #3/A:242@N reasonable false
Created 0 bonds
> bond #3/A:242@C #3/A:243@N reasonable false
Created 0 bonds
> bond #3/A:243@C #3/A:244@N reasonable false
Created 0 bonds
> bond #3/A:244@C #3/A:245@N reasonable false
Created 0 bonds
> bond #3/A:245@C #3/A:246@N reasonable false
Created 0 bonds
> bond #3/A:246@C #3/A:247@N reasonable false
Created 0 bonds
> bond #3/A:247@C #3/A:248@N reasonable false
Created 0 bonds
> bond #3/A:248@C #3/A:249@N reasonable false
Created 0 bonds
> bond #3/A:249@C #3/A:250@N reasonable false
Created 0 bonds
> bond #3/A:250@C #3/A:251@N reasonable false
Created 0 bonds
> bond #3/A:251@C #3/A:252@N reasonable false
Created 0 bonds
> bond #3/A:252@C #3/A:253@N reasonable false
Created 0 bonds
> bond #3/A:253@C #3/A:254@N reasonable false
Created 0 bonds
> bond #3/A:254@C #3/A:255@N reasonable false
Created 0 bonds
> bond #3/A:255@C #3/A:256@N reasonable false
Created 0 bonds
> bond #3/A:256@C #3/A:257@N reasonable false
Created 0 bonds
> bond #3/A:257@C #3/A:258@N reasonable false
Created 0 bonds
> bond #3/A:258@C #3/A:259@N reasonable false
Created 0 bonds
> bond #3/A:10@C #3/A:11@N reasonable false
Created 0 bonds
> bond #3/A:11@C #3/A:12@N reasonable false
Created 0 bonds
> bond #3/A:12@C #3/A:13@N reasonable false
Created 0 bonds
> bond #3/A:13@C #3/A:14@N reasonable false
Created 0 bonds
> bond #3/A:14@C #3/A:15@N reasonable false
Created 0 bonds
> bond #3/A:15@C #3/A:16@N reasonable false
Created 0 bonds
> bond #3/A:16@C #3/A:17@N reasonable false
Created 0 bonds
> bond #3/A:17@C #3/A:18@N reasonable false
Created 0 bonds
> bond #3/A:18@C #3/A:19@N reasonable false
Created 0 bonds
> bond #3/A:19@C #3/A:20@N reasonable false
Created 0 bonds
> bond #3/A:20@C #3/A:21@N reasonable false
Created 0 bonds
> bond #3/A:21@C #3/A:22@N reasonable false
Created 0 bonds
> bond #3/A:22@C #3/A:23@N reasonable false
Created 0 bonds
> bond #3/A:23@C #3/A:24@N reasonable false
Created 0 bonds
> bond #3/A:24@C #3/A:25@N reasonable false
Created 0 bonds
> bond #3/A:25@C #3/A:26@N reasonable false
Created 0 bonds
> bond #3/A:26@C #3/A:27@N reasonable false
Created 0 bonds
> bond #3/A:27@C #3/A:28@N reasonable false
Created 0 bonds
> bond #3/A:28@C #3/A:29@N reasonable false
Created 0 bonds
> bond #3/A:29@C #3/A:30@N reasonable false
Created 0 bonds
> bond #3/A:30@C #3/A:31@N reasonable false
Created 0 bonds
> bond #3/A:31@C #3/A:32@N reasonable false
Created 0 bonds
> bond #3/A:32@C #3/A:33@N reasonable false
Created 0 bonds
> bond #3/A:33@C #3/A:34@N reasonable false
Created 0 bonds
> bond #3/A:34@C #3/A:35@N reasonable false
Created 0 bonds
> bond #3/A:35@C #3/A:36@N reasonable false
Created 0 bonds
> bond #3/A:36@C #3/A:37@N reasonable false
Created 0 bonds
> bond #3/A:37@C #3/A:38@N reasonable false
Created 0 bonds
> bond #3/A:38@C #3/A:39@N reasonable false
Created 0 bonds
> bond #3/A:39@C #3/A:40@N reasonable false
Created 0 bonds
> bond #3/A:40@C #3/A:41@N reasonable false
Created 0 bonds
> bond #3/A:41@C #3/A:42@N reasonable false
Created 0 bonds
> bond #3/A:42@C #3/A:43@N reasonable false
Created 0 bonds
> bond #3/A:43@C #3/A:44@N reasonable false
Created 0 bonds
> bond #3/A:44@C #3/A:45@N reasonable false
Created 0 bonds
> bond #3/A:45@C #3/A:46@N reasonable false
Created 1 bond
> bond #3/A:172@C #3/A:173@N reasonable false
Created 0 bonds
> bond #3/A:173@C #3/A:174@N reasonable false
Created 1 bond
> swapaa #3/A:5 LYS
Using Dunbrack library
mutadedModel #3/A PRO 5: phi none, psi 134.4 trans
Applying LYS rotamer (chi angles: 64.2 -81.9 174.4 -65.5) to mutadedModel #3/A
LYS 5
> color #3/A:5 yellow
> swapaa #3/A:6 ALA
Using Dunbrack library
Swapping mutadedModel #3/A CYS 6 to ALA
> color #3/A:6 yellow
> swapaa #3/A:7 HIS
Using Dunbrack library
mutadedModel #3/A ILE 7: phi -80.8, psi 125.6 trans
Applying HIS rotamer (chi angles: -65.9 -73.5) to mutadedModel #3/A HIS 7
> color #3/A:7 yellow
> swapaa #3/A:8 PRO
Using Dunbrack library
mutadedModel #3/A GLY 8: phi -85.4, psi 152.4 trans
Applying PRO rotamer (chi angles: 33.0 -35.1) to mutadedModel #3/A PRO 8
> color #3/A:8 yellow
> swapaa #3/A:9 ILE
Using Dunbrack library
mutadedModel #3/A PRO 9: phi -60.6, psi 2.7 trans
Applying ILE rotamer (chi angles: -64.5 169.3) to mutadedModel #3/A ILE 9
> color #3/A:9 yellow
> swapaa #3/A:10 LYS
Using Dunbrack library
mutadedModel #3/A ALA 10: phi -123.4, psi 164.1 cis
Applying LYS rotamer (chi angles: -58.7 -67.4 -174.2 -67.0) to mutadedModel
#3/A LYS 10
> color #3/A:10 yellow
> swapaa #3/A:12 ASP
Using Dunbrack library
mutadedModel #3/A THR 12: phi -84.0, psi 111.3 trans
Applying ASP rotamer (chi angles: -176.9 14.3) to mutadedModel #3/A ASP 12
> color #3/A:12 yellow
> swapaa #3/A:13 TRP
Using Dunbrack library
mutadedModel #3/A ARG 13: phi -122.0, psi 147.7 trans
Applying TRP rotamer (chi angles: -65.4 86.7) to mutadedModel #3/A TRP 13
> color #3/A:13 yellow
> swapaa #3/A:17 HIS
Using Dunbrack library
mutadedModel #3/A PHE 17: phi -76.1, psi 127.0 trans
Applying HIS rotamer (chi angles: -173.6 73.3) to mutadedModel #3/A HIS 17
> color #3/A:17 yellow
> swapaa #3/A:20 ARG
Using Dunbrack library
mutadedModel #3/A GLU 20: phi -72.9, psi -38.2 trans
Applying ARG rotamer (chi angles: 179.0 65.5 -178.0 85.8) to mutadedModel #3/A
ARG 20
> color #3/A:20 yellow
> swapaa #3/A:21 LEU
Using Dunbrack library
mutadedModel #3/A ASN 21: phi -75.0, psi -14.0 trans
Applying LEU rotamer (chi angles: -66.1 174.8) to mutadedModel #3/A LEU 21
> color #3/A:21 yellow
> swapaa #3/A:22 GLU
Using Dunbrack library
mutadedModel #3/A GLY 22: phi 87.8, psi 26.9 trans
Applying GLU rotamer (chi angles: -61.8 -177.1 -7.2) to mutadedModel #3/A GLU
22
> color #3/A:22 yellow
> swapaa #3/A:23 ILE
Using Dunbrack library
mutadedModel #3/A THR 23: phi -99.5, psi -25.6 trans
Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/A ILE 23
> color #3/A:23 yellow
> swapaa #3/A:24 TRP
Using Dunbrack library
mutadedModel #3/A TYR 24: phi -112.4, psi -15.5 trans
Applying TRP rotamer (chi angles: -65.9 -16.3) to mutadedModel #3/A TRP 24
> color #3/A:24 yellow
> swapaa #3/A:25 HIS
Using Dunbrack library
mutadedModel #3/A ARG 25: phi -122.0, psi 168.0 trans
Applying HIS rotamer (chi angles: -63.6 -76.8) to mutadedModel #3/A HIS 25
> color #3/A:25 yellow
> swapaa #3/A:26 SER
Using Dunbrack library
mutadedModel #3/A ALA 26: phi -130.9, psi 177.1 trans
Applying SER rotamer (chi angles: 67.4) to mutadedModel #3/A SER 26
> color #3/A:26 yellow
> swapaa #3/A:32 VAL
Using Dunbrack library
mutadedModel #3/A LEU 32: phi -56.9, psi -36.9 trans
Applying VAL rotamer (chi angles: 68.0) to mutadedModel #3/A VAL 32
> color #3/A:32 yellow
> swapaa #3/A:36 ARG
Using Dunbrack library
mutadedModel #3/A TYR 36: phi -57.8, psi -3.8 trans
Applying ARG rotamer (chi angles: -64.4 -65.8 -65.5 167.4) to mutadedModel
#3/A ARG 36
> color #3/A:36 yellow
> swapaa #3/A:37 GLN
Using Dunbrack library
mutadedModel #3/A MET 37: phi -88.3, psi -36.9 trans
Applying GLN rotamer (chi angles: -64.6 -62.0 6.2) to mutadedModel #3/A GLN 37
> color #3/A:37 yellow
> swapaa #3/A:40 THR
Using Dunbrack library
mutadedModel #3/A VAL 40: phi -70.4, psi -31.8 trans
Applying THR rotamer (chi angles: 59.6) to mutadedModel #3/A THR 40
> color #3/A:40 yellow
> swapaa #3/A:42 VAL
Using Dunbrack library
mutadedModel #3/A ILE 42: phi -105.6, psi -41.7 trans
Applying VAL rotamer (chi angles: 175.7) to mutadedModel #3/A VAL 42
> color #3/A:42 yellow
> swapaa #3/A:43 PHE
Using Dunbrack library
mutadedModel #3/A ARG 43: phi -118.6, psi 8.9 trans
Applying PHE rotamer (chi angles: -62.4 127.4) to mutadedModel #3/A PHE 43
> color #3/A:43 yellow
> swapaa #3/A:44 ALA
Using Dunbrack library
Swapping mutadedModel #3/A GLY 44 to ALA
> color #3/A:44 yellow
> swapaa #3/A:46 CYS
Using Dunbrack library
mutadedModel #3/A ASN 46: phi -58.1, psi 101.9 cis
Applying CYS rotamer (chi angles: -179.0) to mutadedModel #3/A CYS 46
> color #3/A:46 yellow
> swapaa #3/A:47 HIS
Using Dunbrack library
mutadedModel #3/A SER 47: phi -112.8, psi 118.4 trans
Applying HIS rotamer (chi angles: -63.3 -80.7) to mutadedModel #3/A HIS 47
> color #3/A:47 yellow
> swapaa #3/A:48 SER
Using Dunbrack library
mutadedModel #3/A CYS 48: phi -63.5, psi -172.8 cis
Applying SER rotamer (chi angles: 67.5) to mutadedModel #3/A SER 48
> color #3/A:48 yellow
> swapaa #3/A:49 LEU
Using Dunbrack library
mutadedModel #3/A GLY 49: phi -152.8, psi 51.2 trans
Applying LEU rotamer (chi angles: -175.3 62.0) to mutadedModel #3/A LEU 49
> color #3/A:49 yellow
> swapaa #3/A:51 ARG
Using Dunbrack library
mutadedModel #3/A PHE 51: phi -26.7, psi 50.3 trans
Applying ARG rotamer (chi angles: -62.1 -75.1 75.2 78.5) to mutadedModel #3/A
ARG 51
> color #3/A:51 yellow
> swapaa #3/A:52 MET
Using Dunbrack library
mutadedModel #3/A GLN 52: phi -97.1, psi 138.3 trans
Applying MET rotamer (chi angles: -59.2 -61.8 -68.2) to mutadedModel #3/A MET
52
> color #3/A:52 yellow
> swapaa #3/A:53 THR
Using Dunbrack library
mutadedModel #3/A ASP 53: phi -83.8, psi 169.4 trans
Applying THR rotamer (chi angles: -168.8) to mutadedModel #3/A THR 53
> color #3/A:53 yellow
> swapaa #3/A:55 THR
Using Dunbrack library
mutadedModel #3/A ASN 55: phi -72.6, psi -16.5 trans
Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/A THR 55
> color #3/A:55 yellow
> swapaa #3/A:56 HIS
Using Dunbrack library
mutadedModel #3/A GLN 56: phi -65.4, psi 0.1 trans
Applying HIS rotamer (chi angles: -67.9 142.4) to mutadedModel #3/A HIS 56
> color #3/A:56 yellow
> swapaa #3/A:58 GLN
Using Dunbrack library
mutadedModel #3/A LEU 58: phi -35.6, psi -84.1 trans
Applying GLN rotamer (chi angles: -68.8 177.2 34.6) to mutadedModel #3/A GLN
58
> color #3/A:58 yellow
> swapaa #3/A:60 PHE
Using Dunbrack library
mutadedModel #3/A ASN 60: phi -91.0, psi -22.0 trans
Applying PHE rotamer (chi angles: 63.6 84.6) to mutadedModel #3/A PHE 60
> color #3/A:60 yellow
> swapaa #3/A:61 MET
Using Dunbrack library
mutadedModel #3/A ARG 61: phi -117.0, psi 160.2 trans
Applying MET rotamer (chi angles: 62.6 -177.8 -179.3) to mutadedModel #3/A MET
61
> color #3/A:61 yellow
> swapaa #3/A:64 GLU
Using Dunbrack library
mutadedModel #3/A SER 64: phi -58.0, psi -42.3 trans
Applying GLU rotamer (chi angles: -67.0 81.2 -0.7) to mutadedModel #3/A GLU 64
> color #3/A:64 yellow
> swapaa #3/A:66 ILE
Using Dunbrack library
mutadedModel #3/A VAL 66: phi -65.6, psi -51.0 trans
Applying ILE rotamer (chi angles: -66.5 168.5) to mutadedModel #3/A ILE 66
> color #3/A:66 yellow
> swapaa #3/A:67 LYS
Using Dunbrack library
mutadedModel #3/A ARG 67: phi -63.2, psi -36.7 trans
Applying LYS rotamer (chi angles: -70.5 179.2 -179.5 178.4) to mutadedModel
#3/A LYS 67
> color #3/A:67 yellow
> swapaa #3/A:71 SER
Using Dunbrack library
mutadedModel #3/A ALA 71: phi -71.5, psi -20.0 trans
Applying SER rotamer (chi angles: 68.0) to mutadedModel #3/A SER 71
> color #3/A:71 yellow
> swapaa #3/A:74 GLU
Using Dunbrack library
mutadedModel #3/A VAL 74: phi -132.8, psi 106.6 trans
Applying GLU rotamer (chi angles: -178.0 177.7 -1.8) to mutadedModel #3/A GLU
74
> color #3/A:74 yellow
> swapaa #3/A:75 MET
Using Dunbrack library
mutadedModel #3/A LEU 75: phi -121.6, psi 150.2 trans
Applying MET rotamer (chi angles: -63.7 -179.6 71.0) to mutadedModel #3/A MET
75
> color #3/A:75 yellow
> swapaa #3/A:76 ILE
Using Dunbrack library
mutadedModel #3/A VAL 76: phi -31.7, psi 103.1 trans
Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/A ILE 76
> color #3/A:76 yellow
> swapaa #3/A:77 ASP
Using Dunbrack library
mutadedModel #3/A ALA 77: phi -77.4, psi 160.2 trans
Applying ASP rotamer (chi angles: -166.3 87.4) to mutadedModel #3/A ASP 77
> color #3/A:77 yellow
> swapaa #3/A:82 ALA
Using Dunbrack library
Swapping mutadedModel #3/A GLY 82 to ALA
> color #3/A:82 yellow
> swapaa #3/A:83 GLU
Using Dunbrack library
mutadedModel #3/A THR 83: phi -94.5, psi 9.9 trans
Applying GLU rotamer (chi angles: -176.8 177.3 -59.9) to mutadedModel #3/A GLU
83
> color #3/A:83 yellow
> swapaa #3/A:88 ARG
Using Dunbrack library
mutadedModel #3/A PHE 88: phi -90.1, psi 133.7 trans
Applying ARG rotamer (chi angles: -64.5 177.6 65.6 85.0) to mutadedModel #3/A
ARG 88
> color #3/A:88 yellow
> swapaa #3/A:95 ASP
Using Dunbrack library
mutadedModel #3/A GLU 95: phi -114.2, psi 151.6 trans
Applying ASP rotamer (chi angles: -65.9 -0.3) to mutadedModel #3/A ASP 95
> color #3/A:95 yellow
> swapaa #3/A:99 THR
Using Dunbrack library
mutadedModel #3/A GLU 99: phi -84.3, psi 142.9 trans
Applying THR rotamer (chi angles: -176.4) to mutadedModel #3/A THR 99
> color #3/A:99 yellow
> swapaa #3/A:100 PRO
Using Dunbrack library
mutadedModel #3/A ALA 100: phi -90.7, psi -99.6 trans
Applying PRO rotamer (chi angles: 27.2 -34.5) to mutadedModel #3/A PRO 100
> color #3/A:100 yellow
> swapaa #3/A:101 TYR
Using Dunbrack library
mutadedModel #3/A PHE 101: phi -91.1, psi 132.1 trans
Applying TYR rotamer (chi angles: -68.6 117.5) to mutadedModel #3/A TYR 101
> color #3/A:101 yellow
> swapaa #3/A:104 GLN
Using Dunbrack library
mutadedModel #3/A LYS 104: phi -69.4, psi -36.1 trans
Applying GLN rotamer (chi angles: -69.0 176.9 -81.9) to mutadedModel #3/A GLN
104
> color #3/A:104 yellow
> swapaa #3/A:109 PHE
Using Dunbrack library
mutadedModel #3/A ARG 109: phi -75.2, psi -37.5 trans
Applying PHE rotamer (chi angles: -176.2 74.7) to mutadedModel #3/A PHE 109
> color #3/A:109 yellow
> swapaa #3/A:114 ALA
Using Dunbrack library
Swapping mutadedModel #3/A SER 114 to ALA
> color #3/A:114 yellow
> swapaa #3/A:116 PRO
Using Dunbrack library
mutadedModel #3/A ALA 116: phi -57.3, psi 114.8 trans
Applying PRO rotamer (chi angles: -25.2 36.8) to mutadedModel #3/A PRO 116
> color #3/A:116 yellow
> swapaa #3/A:118 ASP
Using Dunbrack library
mutadedModel #3/A GLU 118: phi -60.2, psi 135.8 trans
Applying ASP rotamer (chi angles: -173.1 84.4) to mutadedModel #3/A ASP 118
> color #3/A:118 yellow
> swapaa #3/A:122 ALA
Using Dunbrack library
Swapping mutadedModel #3/A ASP 122 to ALA
> color #3/A:122 yellow
> swapaa #3/A:124 PHE
Using Dunbrack library
mutadedModel #3/A ARG 124: phi -107.2, psi 15.3 trans
Applying PHE rotamer (chi angles: -170.8 72.2) to mutadedModel #3/A PHE 124
> color #3/A:124 yellow
> swapaa #3/A:126 LYS
Using Dunbrack library
mutadedModel #3/A PHE 126: phi -101.7, psi 135.4 trans
Applying LYS rotamer (chi angles: -80.8 70.1 178.6 177.6) to mutadedModel #3/A
LYS 126
> color #3/A:126 yellow
> swapaa #3/A:128 GLY
Using Dunbrack library
Swapping mutadedModel #3/A ALA 128 to GLY
> color #3/A:128 yellow
> swapaa #3/A:130 SER
Using Dunbrack library
mutadedModel #3/A VAL 130: phi -78.0, psi -30.1 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/A SER 130
> color #3/A:130 yellow
> swapaa #3/A:132 TYR
Using Dunbrack library
mutadedModel #3/A PHE 132: phi -67.8, psi -40.1 trans
Applying TYR rotamer (chi angles: -71.7 49.7) to mutadedModel #3/A TYR 132
> color #3/A:132 yellow
> swapaa #3/A:135 SER
Using Dunbrack library
mutadedModel #3/A ALA 135: phi -70.1, psi -29.6 trans
Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/A SER 135
> color #3/A:135 yellow
> swapaa #3/A:137 VAL
Using Dunbrack library
mutadedModel #3/A GLU 137: phi -76.7, psi -29.4 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/A VAL 137
> color #3/A:137 yellow
> swapaa #3/A:140 TYR
Using Dunbrack library
mutadedModel #3/A ARG 140: phi -117.9, psi 4.5 trans
Applying TYR rotamer (chi angles: -62.0 102.4) to mutadedModel #3/A TYR 140
> color #3/A:140 yellow
> swapaa #3/A:141 ASN
Using Dunbrack library
mutadedModel #3/A THR 141: phi -72.0, psi 3.9 trans
Applying ASN rotamer (chi angles: -71.6 62.9) to mutadedModel #3/A ASN 141
> color #3/A:141 yellow
> swapaa #3/A:142 TRP
Using Dunbrack library
mutadedModel #3/A ALA 142: phi -83.5, psi -10.1 trans
Applying TRP rotamer (chi angles: -68.2 -102.0) to mutadedModel #3/A TRP 142
> color #3/A:142 yellow
> swapaa #3/A:144 ASN
Using Dunbrack library
mutadedModel #3/A THR 144: phi -70.9, psi -22.2 trans
Applying ASN rotamer (chi angles: -72.5 -80.3) to mutadedModel #3/A ASN 144
> color #3/A:144 yellow
> swapaa #3/A:148 MET
Using Dunbrack library
mutadedModel #3/A LEU 148: phi -137.5, psi 148.0 trans
Applying MET rotamer (chi angles: -177.0 63.6 69.1) to mutadedModel #3/A MET
148
> color #3/A:148 yellow
> swapaa #3/A:149 GLU
Using Dunbrack library
mutadedModel #3/A ALA 149: phi -66.0, psi 74.8 trans
Applying GLU rotamer (chi angles: -65.5 82.2 0.3) to mutadedModel #3/A GLU 149
> color #3/A:149 yellow
> swapaa #3/A:150 ILE
Using Dunbrack library
mutadedModel #3/A PRO 150: phi 71.1, psi none trans
Applying ILE rotamer (chi angles: -63.8 170.1) to mutadedModel #3/A ILE 150
> color #3/A:150 yellow
> swapaa #3/A:152 PRO
Using Dunbrack library
mutadedModel #3/A LEU 152: phi none, psi 105.1 trans
Applying PRO rotamer (chi angles: 27.0 -34.6) to mutadedModel #3/A PRO 152
> color #3/A:152 yellow
> swapaa #3/A:153 PHE
Using Dunbrack library
mutadedModel #3/A SER 153: phi -64.7, psi 146.8 trans
Applying PHE rotamer (chi angles: 64.2 37.2) to mutadedModel #3/A PHE 153
> color #3/A:153 yellow
> swapaa #3/A:154 ALA
Using Dunbrack library
Swapping mutadedModel #3/A PRO 154 to ALA
> color #3/A:154 yellow
> swapaa #3/A:155 PRO
Using Dunbrack library
mutadedModel #3/A PHE 155: phi -102.5, psi 1.6 trans
Applying PRO rotamer (chi angles: -22.6 34.7) to mutadedModel #3/A PRO 155
> color #3/A:155 yellow
> swapaa #3/A:156 GLU
Using Dunbrack library
mutadedModel #3/A SER 156: phi -113.7, psi 137.4 trans
Applying GLU rotamer (chi angles: 61.0 86.7 18.3) to mutadedModel #3/A GLU 156
> color #3/A:156 yellow
> swapaa #3/A:157 VAL
Using Dunbrack library
mutadedModel #3/A PRO 157: phi -72.9, psi 161.8 trans
Applying VAL rotamer (chi angles: -60.7) to mutadedModel #3/A VAL 157
> color #3/A:157 yellow
> swapaa #3/A:158 LYS
Using Dunbrack library
mutadedModel #3/A ALA 158: phi -75.8, psi 127.9 trans
Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel #3/A
LYS 158
> color #3/A:158 yellow
> swapaa #3/A:159 PRO
Using Dunbrack library
mutadedModel #3/A VAL 159: phi -63.8, psi 120.2 trans
Applying PRO rotamer (chi angles: -25.2 36.9) to mutadedModel #3/A PRO 159
> color #3/A:159 yellow
> swapaa #3/A:160 GLY
Using Dunbrack library
Swapping mutadedModel #3/A PRO 160 to GLY
> color #3/A:160 yellow
> swapaa #3/A:161 GLN
Using Dunbrack library
mutadedModel #3/A PRO 161: phi -55.0, psi 129.5 trans
Applying GLN rotamer (chi angles: 66.6 -87.0 -83.6) to mutadedModel #3/A GLN
161
> color #3/A:161 yellow
> swapaa #3/A:162 PHE
Using Dunbrack library
mutadedModel #3/A GLY 162: phi 122.5, psi 17.8 trans
Applying PHE rotamer (chi angles: -67.0 122.3) to mutadedModel #3/A PHE 162
> color #3/A:162 yellow
> swapaa #3/A:163 TRP
Using Dunbrack library
mutadedModel #3/A LYS 163: phi -126.2, psi 170.5 trans
Applying TRP rotamer (chi angles: -62.9 61.6) to mutadedModel #3/A TRP 163
> color #3/A:163 yellow
> swapaa #3/A:164 ASN
Using Dunbrack library
mutadedModel #3/A ARG 164: phi -157.1, psi 162.2 trans
Applying ASN rotamer (chi angles: -160.6 -6.5) to mutadedModel #3/A ASN 164
> color #3/A:164 yellow
> swapaa #3/A:165 PRO
Using Dunbrack library
mutadedModel #3/A TRP 165: phi -111.5, psi 68.1 trans
Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/A PRO 165
> color #3/A:165 yellow
> swapaa #3/A:166 TYR
Using Dunbrack library
mutadedModel #3/A ASN 166: phi -73.0, psi 110.2 trans
Applying TYR rotamer (chi angles: -177.4 74.2) to mutadedModel #3/A TYR 166
> color #3/A:166 yellow
> swapaa #3/A:167 PHE
Using Dunbrack library
mutadedModel #3/A PRO 167: phi -58.2, psi -10.9 trans
Applying PHE rotamer (chi angles: -72.4 12.4) to mutadedModel #3/A PHE 167
> color #3/A:167 yellow
> swapaa #3/A:168 LYS
Using Dunbrack library
mutadedModel #3/A ARG 168: phi -113.9, psi 21.5 trans
Applying LYS rotamer (chi angles: -163.8 -88.4 117.5 177.3) to mutadedModel
#3/A LYS 168
> color #3/A:168 yellow
> swapaa #3/A:170 CYS
Using Dunbrack library
mutadedModel #3/A PRO 170: phi -179.8, psi 101.7 trans
Applying CYS rotamer (chi angles: -177.1) to mutadedModel #3/A CYS 170
> color #3/A:170 yellow
> swapaa #3/A:171 VAL
Using Dunbrack library
mutadedModel #3/A GLY 171: phi 51.8, psi -37.0 trans
Applying VAL rotamer (chi angles: 175.7) to mutadedModel #3/A VAL 171
> color #3/A:171 yellow
> swapaa #3/A:172 LEU
Using Dunbrack library
mutadedModel #3/A THR 172: phi -145.0, psi 142.8 cis
Applying LEU rotamer (chi angles: 69.6 163.1) to mutadedModel #3/A LEU 172
> color #3/A:172 yellow
> swapaa #3/A:173 SER
Using Dunbrack library
mutadedModel #3/A THR 173: phi -99.2, psi -7.7 trans
Applying SER rotamer (chi angles: -179.8) to mutadedModel #3/A SER 173
> color #3/A:173 yellow
> swapaa #3/A:174 MET
Using Dunbrack library
mutadedModel #3/A CYS 174: phi 149.4, psi -72.4 trans
Applying MET rotamer (chi angles: -177.8 -82.0 -72.5) to mutadedModel #3/A MET
174
> color #3/A:174 yellow
> swapaa #3/A:177 PRO
Using Dunbrack library
mutadedModel #3/A VAL 177: phi -106.0, psi -56.1 trans
Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/A PRO 177
> color #3/A:177 yellow
> swapaa #3/A:180 ASP
Using Dunbrack library
mutadedModel #3/A ALA 180: phi -55.1, psi 112.6 trans
Applying ASP rotamer (chi angles: -175.5 -40.1) to mutadedModel #3/A ASP 180
> color #3/A:180 yellow
> swapaa #3/A:182 LEU
Using Dunbrack library
mutadedModel #3/A ASN 182: phi -79.0, psi -21.4 trans
Applying LEU rotamer (chi angles: -172.7 59.3) to mutadedModel #3/A LEU 182
> color #3/A:182 yellow
> swapaa #3/A:183 VAL
Using Dunbrack library
mutadedModel #3/A ILE 183: phi -107.4, psi 136.9 trans
Applying VAL rotamer (chi angles: 176.9) to mutadedModel #3/A VAL 183
> color #3/A:183 yellow
> swapaa #3/A:184 ASP
Using Dunbrack library
mutadedModel #3/A GLU 184: phi -102.4, psi 115.2 trans
Applying ASP rotamer (chi angles: 62.4 -50.2) to mutadedModel #3/A ASP 184
> color #3/A:184 yellow
> swapaa #3/A:185 TYR
Using Dunbrack library
mutadedModel #3/A PHE 185: phi -74.7, psi 159.8 trans
Applying TYR rotamer (chi angles: -69.8 99.8) to mutadedModel #3/A TYR 185
> color #3/A:185 yellow
> swapaa #3/A:186 GLU
Using Dunbrack library
mutadedModel #3/A VAL 186: phi -79.5, psi -34.7 trans
Applying GLU rotamer (chi angles: 66.4 -84.0 -9.3) to mutadedModel #3/A GLU
186
> color #3/A:186 yellow
> swapaa #3/A:187 ASP
Using Dunbrack library
mutadedModel #3/A ARG 187: phi -96.5, psi 0.7 trans
Applying ASP rotamer (chi angles: 63.1 -3.7) to mutadedModel #3/A ASP 187
> color #3/A:187 yellow
> swapaa #3/A:189 THR
Using Dunbrack library
mutadedModel #3/A ARG 189: phi -93.2, psi 138.5 trans
Applying THR rotamer (chi angles: -178.3) to mutadedModel #3/A THR 189
> color #3/A:189 yellow
> swapaa #3/A:191 ALA
Using Dunbrack library
Swapping mutadedModel #3/A GLY 191 to ALA
> color #3/A:191 yellow
> swapaa #3/A:193 ILE
Using Dunbrack library
mutadedModel #3/A LEU 193: phi -78.7, psi -47.8 trans
Applying ILE rotamer (chi angles: -65.5 168.9) to mutadedModel #3/A ILE 193
> color #3/A:193 yellow
> swapaa #3/A:195 GLN
Using Dunbrack library
mutadedModel #3/A LEU 195: phi -61.1, psi -45.8 trans
Applying GLN rotamer (chi angles: -176.6 67.3 73.9) to mutadedModel #3/A GLN
195
> color #3/A:195 yellow
> swapaa #3/A:198 LYS
Using Dunbrack library
mutadedModel #3/A GLY 198: phi -56.9, psi -38.2 trans
Applying LYS rotamer (chi angles: 179.8 -96.2 -71.1 178.0) to mutadedModel
#3/A LYS 198
> color #3/A:198 yellow
> swapaa #3/A:199 ASP
Using Dunbrack library
mutadedModel #3/A ASN 199: phi -71.2, psi -28.1 trans
Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/A ASP 199
> color #3/A:199 yellow
> swapaa #3/A:202 ASN
Using Dunbrack library
mutadedModel #3/A LEU 202: phi -56.5, psi -36.7 trans
Applying ASN rotamer (chi angles: -173.9 56.5) to mutadedModel #3/A ASN 202
> color #3/A:202 yellow
> swapaa #3/A:205 ARG
Using Dunbrack library
mutadedModel #3/A TYR 205: phi -63.6, psi -48.3 trans
Applying ARG rotamer (chi angles: 178.0 67.1 -178.4 -87.8) to mutadedModel
#3/A ARG 205
> color #3/A:205 yellow
> swapaa #3/A:208 ALA
Using Dunbrack library
Swapping mutadedModel #3/A ASP 208 to ALA
> color #3/A:208 yellow
> swapaa #3/A:209 GLU
Using Dunbrack library
mutadedModel #3/A ASP 209: phi -136.3, psi 65.9 trans
Applying GLU rotamer (chi angles: -63.1 -179.9 25.1) to mutadedModel #3/A GLU
209
> color #3/A:209 yellow
> swapaa #3/A:210 SER
Using Dunbrack library
mutadedModel #3/A PRO 210: phi -62.7, psi -19.9 trans
Applying SER rotamer (chi angles: 67.0) to mutadedModel #3/A SER 210
> color #3/A:210 yellow
> swapaa #3/A:211 GLU
Using Dunbrack library
mutadedModel #3/A ASP 211: phi -88.7, psi 6.0 trans
Applying GLU rotamer (chi angles: -65.2 77.1 16.4) to mutadedModel #3/A GLU
211
> color #3/A:211 yellow
> swapaa #3/A:212 TYR
Using Dunbrack library
mutadedModel #3/A PHE 212: phi -69.2, psi -22.1 trans
Applying TYR rotamer (chi angles: -170.7 100.0) to mutadedModel #3/A TYR 212
> color #3/A:212 yellow
> swapaa #3/A:213 ASP
Using Dunbrack library
mutadedModel #3/A GLU 213: phi -90.3, psi -25.0 trans
Applying ASP rotamer (chi angles: -65.3 -5.8) to mutadedModel #3/A ASP 213
> color #3/A:213 yellow
> swapaa #3/A:214 ASP
Using Dunbrack library
mutadedModel #3/A ALA 214: phi -68.2, psi -39.9 trans
Applying ASP rotamer (chi angles: -172.4 36.0) to mutadedModel #3/A ASP 214
> color #3/A:214 yellow
> swapaa #3/A:216 ARG
Using Dunbrack library
mutadedModel #3/A HIS 216: phi -72.3, psi -22.0 trans
Applying ARG rotamer (chi angles: -64.8 -67.2 -176.1 -92.8) to mutadedModel
#3/A ARG 216
> color #3/A:216 yellow
> swapaa #3/A:221 LYS
Using Dunbrack library
mutadedModel #3/A ARG 221: phi -75.5, psi -42.0 trans
Applying LYS rotamer (chi angles: -178.8 -96.1 -71.1 178.0) to mutadedModel
#3/A LYS 221
> color #3/A:221 yellow
> swapaa #3/A:222 VAL
Using Dunbrack library
mutadedModel #3/A GLU 222: phi -75.7, psi -31.2 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/A VAL 222
> color #3/A:222 yellow
> swapaa #3/A:223 ILE
Using Dunbrack library
mutadedModel #3/A ASN 223: phi -76.2, psi -26.9 trans
Applying ILE rotamer (chi angles: -164.9 64.5) to mutadedModel #3/A ILE 223
> color #3/A:223 yellow
> swapaa #3/A:226 VAL
Using Dunbrack library
mutadedModel #3/A CYS 226: phi -65.4, psi -49.8 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/A VAL 226
> color #3/A:226 yellow
> swapaa #3/A:228 LEU
Using Dunbrack library
mutadedModel #3/A ASN 228: phi -67.9, psi -39.3 trans
Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/A LEU 228
> color #3/A:228 yellow
> swapaa #3/A:230 ASN
Using Dunbrack library
mutadedModel #3/A ILE 230: phi -73.2, psi -33.8 trans
Applying ASN rotamer (chi angles: -73.1 1.3) to mutadedModel #3/A ASN 230
> color #3/A:230 yellow
> swapaa #3/A:231 CYS
Using Dunbrack library
mutadedModel #3/A GLU 231: phi -72.5, psi -37.0 trans
Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/A CYS 231
> color #3/A:231 yellow
> swapaa #3/A:234 LEU
Using Dunbrack library
mutadedModel #3/A THR 234: phi -64.7, psi -37.2 trans
Applying LEU rotamer (chi angles: -178.6 60.2) to mutadedModel #3/A LEU 234
> color #3/A:234 yellow
> swapaa #3/A:235 HIS
Using Dunbrack library
mutadedModel #3/A PHE 235: phi -81.0, psi -42.7 trans
Applying HIS rotamer (chi angles: -69.4 82.0) to mutadedModel #3/A HIS 235
> color #3/A:235 yellow
> swapaa #3/A:236 TYR
Using Dunbrack library
mutadedModel #3/A PHE 236: phi -66.1, psi -33.6 trans
Applying TYR rotamer (chi angles: -171.9 50.3) to mutadedModel #3/A TYR 236
> color #3/A:236 yellow
> swapaa #3/A:237 GLY
Using Dunbrack library
Swapping mutadedModel #3/A ALA 237 to GLY
> color #3/A:237 yellow
> swapaa #3/A:238 GLN
Using Dunbrack library
mutadedModel #3/A MET 238: phi -69.9, psi -38.8 trans
Applying GLN rotamer (chi angles: -175.0 62.7 77.1) to mutadedModel #3/A GLN
238
> color #3/A:238 yellow
> swapaa #3/A:239 LYS
Using Dunbrack library
mutadedModel #3/A GLN 239: phi -67.1, psi -43.0 trans
Applying LYS rotamer (chi angles: -68.1 -170.4 -73.7 -66.9) to mutadedModel
#3/A LYS 239
> color #3/A:239 yellow
> swapaa #3/A:240 ASN
Using Dunbrack library
mutadedModel #3/A ILE 240: phi -85.2, psi -6.8 trans
Applying ASN rotamer (chi angles: -165.5 46.6) to mutadedModel #3/A ASN 240
> color #3/A:240 yellow
> swapaa #3/A:243 TRP
Using Dunbrack library
mutadedModel #3/A ASN 243: phi -58.7, psi -38.6 trans
Applying TRP rotamer (chi angles: 68.0 -92.0) to mutadedModel #3/A TRP 243
> color #3/A:243 yellow
> swapaa #3/A:245 ILE
Using Dunbrack library
mutadedModel #3/A LEU 245: phi -77.3, psi -40.6 trans
Applying ILE rotamer (chi angles: -80.2 54.9) to mutadedModel #3/A ILE 245
> color #3/A:245 yellow
> swapaa #3/A:246 TYR
Using Dunbrack library
mutadedModel #3/A PHE 246: phi -82.9, psi -10.3 trans
Applying TYR rotamer (chi angles: -68.6 103.8) to mutadedModel #3/A TYR 246
> color #3/A:246 yellow
> swapaa #3/A:248 ARG
Using Dunbrack library
mutadedModel #3/A TYR 248: phi -149.0, psi 116.2 trans
Applying ARG rotamer (chi angles: -75.6 84.8 68.3 -167.6) to mutadedModel #3/A
ARG 248
> color #3/A:248 yellow
> swapaa #3/A:249 THR
Using Dunbrack library
mutadedModel #3/A MET 249: phi -118.7, psi 107.7 trans
Applying THR rotamer (chi angles: -59.4) to mutadedModel #3/A THR 249
> color #3/A:249 yellow
> swapaa #3/A:251 PHE
Using Dunbrack library
mutadedModel #3/A TRP 251: phi -100.5, psi 137.1 trans
Applying PHE rotamer (chi angles: -67.8 91.4) to mutadedModel #3/A PHE 251
> color #3/A:251 yellow
> swapaa #3/A:255 LYS
Using Dunbrack library
mutadedModel #3/A THR 255: phi -119.6, psi -20.3 cis
Applying LYS rotamer (chi angles: 67.7 -178.4 -179.2 -179.0) to mutadedModel
#3/A LYS 255
> color #3/A:255 yellow
> swapaa #3/A:256 LYS
Using Dunbrack library
mutadedModel #3/A ASP 256: phi 2.7, psi 75.1 cis
Applying LYS rotamer (chi angles: -61.4 -65.7 -70.5 -68.2) to mutadedModel
#3/A LYS 256
> color #3/A:256 yellow
> swapaa #3/A:257 VAL
Using Dunbrack library
mutadedModel #3/A THR 257: phi -106.3, psi 80.0 trans
Applying VAL rotamer (chi angles: -179.5) to mutadedModel #3/A VAL 257
> color #3/A:257 yellow
> swapaa #3/A:258 TRP
Using Dunbrack library
mutadedModel #3/A GLY 258: phi 42.6, psi 62.8 trans
Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/A TRP 258
> color #3/A:258 yellow
> color #3/A:259 cyan
> select #3/N
911 atoms, 936 bonds, 114 residues, 1 model selected
> bond #3/N:34@C #3/N:35@N reasonable false
Created 0 bonds
> bond #3/N:35@C #3/N:36@N reasonable false
Created 0 bonds
> bond #3/N:36@C #3/N:37@N reasonable false
Created 0 bonds
> bond #3/N:37@C #3/N:38@N reasonable false
Created 0 bonds
> bond #3/N:38@C #3/N:39@N reasonable false
Created 0 bonds
> bond #3/N:39@C #3/N:40@N reasonable false
Created 0 bonds
> bond #3/N:40@C #3/N:41@N reasonable false
Created 0 bonds
> bond #3/N:41@C #3/N:42@N reasonable false
Created 1 bond
> bond #3/N:47@C #3/N:48@N reasonable false
Created 0 bonds
> bond #3/N:48@C #3/N:49@N reasonable false
Created 0 bonds
> bond #3/N:49@C #3/N:50@N reasonable false
Created 0 bonds
> bond #3/N:50@C #3/N:51@N reasonable false
Created 0 bonds
> bond #3/N:51@C #3/N:52@N reasonable false
Created 0 bonds
> bond #3/N:52@C #3/N:53@N reasonable false
Created 0 bonds
> bond #3/N:53@C #3/N:54@N reasonable false
Created 0 bonds
> bond #3/N:54@C #3/N:55@N reasonable false
Created 0 bonds
> bond #3/N:55@C #3/N:56@N reasonable false
Created 0 bonds
> bond #3/N:56@C #3/N:57@N reasonable false
Created 0 bonds
> bond #3/N:57@C #3/N:58@N reasonable false
Created 0 bonds
> bond #3/N:58@C #3/N:59@N reasonable false
Created 0 bonds
> bond #3/N:59@C #3/N:60@N reasonable false
Created 0 bonds
> bond #3/N:60@C #3/N:61@N reasonable false
Created 0 bonds
> bond #3/N:61@C #3/N:62@N reasonable false
Created 0 bonds
> bond #3/N:62@C #3/N:63@N reasonable false
Created 0 bonds
> bond #3/N:63@C #3/N:64@N reasonable false
Created 0 bonds
> bond #3/N:64@C #3/N:65@N reasonable false
Created 0 bonds
> bond #3/N:65@C #3/N:66@N reasonable false
Created 0 bonds
> bond #3/N:66@C #3/N:67@N reasonable false
Created 0 bonds
> bond #3/N:67@C #3/N:68@N reasonable false
Created 0 bonds
> bond #3/N:68@C #3/N:69@N reasonable false
Created 0 bonds
> bond #3/N:69@C #3/N:70@N reasonable false
Created 0 bonds
> bond #3/N:70@C #3/N:71@N reasonable false
Created 0 bonds
> bond #3/N:71@C #3/N:72@N reasonable false
Created 0 bonds
> bond #3/N:72@C #3/N:73@N reasonable false
Created 0 bonds
> bond #3/N:73@C #3/N:74@N reasonable false
Created 0 bonds
> bond #3/N:74@C #3/N:75@N reasonable false
Created 0 bonds
> bond #3/N:75@C #3/N:76@N reasonable false
Created 0 bonds
> bond #3/N:76@C #3/N:77@N reasonable false
Created 0 bonds
> bond #3/N:77@C #3/N:78@N reasonable false
Created 0 bonds
> bond #3/N:78@C #3/N:79@N reasonable false
Created 0 bonds
> bond #3/N:79@C #3/N:80@N reasonable false
Created 0 bonds
> bond #3/N:80@C #3/N:81@N reasonable false
Created 0 bonds
> bond #3/N:81@C #3/N:82@N reasonable false
Created 0 bonds
> bond #3/N:82@C #3/N:83@N reasonable false
Created 0 bonds
> bond #3/N:83@C #3/N:84@N reasonable false
Created 0 bonds
> bond #3/N:84@C #3/N:85@N reasonable false
Created 0 bonds
> bond #3/N:85@C #3/N:86@N reasonable false
Created 0 bonds
> bond #3/N:86@C #3/N:87@N reasonable false
Created 0 bonds
> bond #3/N:87@C #3/N:88@N reasonable false
Created 0 bonds
> bond #3/N:88@C #3/N:89@N reasonable false
Created 0 bonds
> bond #3/N:89@C #3/N:90@N reasonable false
Created 0 bonds
> bond #3/N:90@C #3/N:91@N reasonable false
Created 0 bonds
> bond #3/N:91@C #3/N:92@N reasonable false
Created 0 bonds
> bond #3/N:92@C #3/N:93@N reasonable false
Created 0 bonds
> bond #3/N:93@C #3/N:94@N reasonable false
Created 0 bonds
> bond #3/N:94@C #3/N:95@N reasonable false
Created 0 bonds
> bond #3/N:95@C #3/N:96@N reasonable false
Created 0 bonds
> bond #3/N:96@C #3/N:97@N reasonable false
Created 0 bonds
> bond #3/N:97@C #3/N:98@N reasonable false
Created 0 bonds
> bond #3/N:98@C #3/N:99@N reasonable false
Created 0 bonds
> bond #3/N:99@C #3/N:100@N reasonable false
Created 0 bonds
> bond #3/N:100@C #3/N:101@N reasonable false
Created 0 bonds
> bond #3/N:101@C #3/N:102@N reasonable false
Created 0 bonds
> bond #3/N:102@C #3/N:103@N reasonable false
Created 0 bonds
> bond #3/N:103@C #3/N:104@N reasonable false
Created 0 bonds
> bond #3/N:104@C #3/N:105@N reasonable false
Created 0 bonds
> bond #3/N:105@C #3/N:106@N reasonable false
Created 0 bonds
> bond #3/N:106@C #3/N:107@N reasonable false
Created 0 bonds
> bond #3/N:107@C #3/N:108@N reasonable false
Created 0 bonds
> bond #3/N:108@C #3/N:109@N reasonable false
Created 0 bonds
> bond #3/N:109@C #3/N:110@N reasonable false
Created 0 bonds
> bond #3/N:110@C #3/N:111@N reasonable false
Created 0 bonds
> bond #3/N:111@C #3/N:112@N reasonable false
Created 0 bonds
> bond #3/N:112@C #3/N:113@N reasonable false
Created 0 bonds
> bond #3/N:113@C #3/N:114@N reasonable false
Created 0 bonds
> bond #3/N:114@C #3/N:115@N reasonable false
Created 0 bonds
> bond #3/N:115@C #3/N:116@N reasonable false
Created 0 bonds
> bond #3/N:116@C #3/N:117@N reasonable false
Created 0 bonds
> bond #3/N:117@C #3/N:118@N reasonable false
Created 0 bonds
> bond #3/N:118@C #3/N:119@N reasonable false
Created 0 bonds
> bond #3/N:119@C #3/N:120@N reasonable false
Created 0 bonds
> bond #3/N:120@C #3/N:121@N reasonable false
Created 0 bonds
> bond #3/N:121@C #3/N:122@N reasonable false
Created 0 bonds
> bond #3/N:122@C #3/N:123@N reasonable false
Created 0 bonds
> bond #3/N:123@C #3/N:124@N reasonable false
Created 0 bonds
> bond #3/N:124@C #3/N:125@N reasonable false
Created 0 bonds
> bond #3/N:125@C #3/N:126@N reasonable false
Created 0 bonds
> bond #3/N:126@C #3/N:127@N reasonable false
Created 0 bonds
> bond #3/N:127@C #3/N:128@N reasonable false
Created 0 bonds
> bond #3/N:128@C #3/N:129@N reasonable false
Created 0 bonds
> bond #3/N:129@C #3/N:130@N reasonable false
Created 0 bonds
> bond #3/N:130@C #3/N:131@N reasonable false
Created 0 bonds
> bond #3/N:131@C #3/N:132@N reasonable false
Created 0 bonds
> bond #3/N:132@C #3/N:133@N reasonable false
Created 0 bonds
> bond #3/N:133@C #3/N:134@N reasonable false
Created 0 bonds
> bond #3/N:134@C #3/N:135@N reasonable false
Created 0 bonds
> bond #3/N:135@C #3/N:136@N reasonable false
Created 0 bonds
> bond #3/N:136@C #3/N:137@N reasonable false
Created 0 bonds
> bond #3/N:137@C #3/N:138@N reasonable false
Created 0 bonds
> bond #3/N:138@C #3/N:139@N reasonable false
Created 0 bonds
> bond #3/N:139@C #3/N:140@N reasonable false
Created 0 bonds
> bond #3/N:140@C #3/N:141@N reasonable false
Created 0 bonds
> bond #3/N:141@C #3/N:142@N reasonable false
Created 0 bonds
> bond #3/N:142@C #3/N:143@N reasonable false
Created 0 bonds
> bond #3/N:143@C #3/N:144@N reasonable false
Created 0 bonds
> bond #3/N:144@C #3/N:145@N reasonable false
Created 0 bonds
> bond #3/N:145@C #3/N:146@N reasonable false
Created 0 bonds
> bond #3/N:146@C #3/N:147@N reasonable false
Created 0 bonds
> bond #3/N:42@C #3/N:43@N reasonable false
Created 0 bonds
> bond #3/N:43@C #3/N:44@N reasonable false
Created 0 bonds
> bond #3/N:44@C #3/N:45@N reasonable false
Created 0 bonds
> bond #3/N:45@C #3/N:46@N reasonable false
Created 0 bonds
> bond #3/N:46@C #3/N:47@N reasonable false
Created 1 bond
> swapaa #3/N:34 PHE
Using Dunbrack library
mutadedModel #3/N ASN 34: phi none, psi 76.1 trans
Applying PHE rotamer (chi angles: 62.0 -6.5) to mutadedModel #3/N PHE 34
> color #3/N:34 yellow
> swapaa #3/N:37 ILE
Using Dunbrack library
mutadedModel #3/N PHE 37: phi -128.0, psi -55.9 trans
Applying ILE rotamer (chi angles: -61.6 171.6) to mutadedModel #3/N ILE 37
> color #3/N:37 yellow
> swapaa #3/N:38 THR
Using Dunbrack library
mutadedModel #3/N VAL 38: phi -153.1, psi 148.7 trans
Applying THR rotamer (chi angles: -57.7) to mutadedModel #3/N THR 38
> color #3/N:38 yellow
> swapaa #3/N:40 CYS
Using Dunbrack library
mutadedModel #3/N SER 40: phi -115.1, psi -165.9 trans
Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/N CYS 40
> color #3/N:40 yellow
> swapaa #3/N:41 GLY
Using Dunbrack library
Swapping mutadedModel #3/N PRO 41 to GLY
> color #3/N:41 yellow
> swapaa #3/N:43 TRP
Using Dunbrack library
mutadedModel #3/N ASN 43: phi -59.4, psi -1.7 trans
Applying TRP rotamer (chi angles: -178.9 85.5) to mutadedModel #3/N TRP 43
> color #3/N:43 yellow
> swapaa #3/N:44 GLY
Using Dunbrack library
Swapping mutadedModel #3/N SER 44 to GLY
> color #3/N:44 yellow
> swapaa #3/N:45 GLY
Using Dunbrack library
Swapping mutadedModel #3/N SER 45 to GLY
> color #3/N:45 yellow
> swapaa #3/N:47 MET
Using Dunbrack library
mutadedModel #3/N HIS 47: phi 99.0, psi 30.2 trans
Applying MET rotamer (chi angles: -66.7 177.1 70.2) to mutadedModel #3/N MET
47
> color #3/N:47 yellow
> swapaa #3/N:48 TRP
Using Dunbrack library
mutadedModel #3/N ALA 48: phi 163.5, psi 23.2 trans
Applying TRP rotamer (chi angles: -177.8 85.5) to mutadedModel #3/N TRP 48
> color #3/N:48 yellow
> swapaa #3/N:49 SER
Using Dunbrack library
mutadedModel #3/N ALA 49: phi -120.9, psi 4.2 trans
Applying SER rotamer (chi angles: -62.6) to mutadedModel #3/N SER 49
> color #3/N:49 yellow
> swapaa #3/N:50 SER
Using Dunbrack library
mutadedModel #3/N ALA 50: phi -72.8, psi 128.2 trans
Applying SER rotamer (chi angles: 62.6) to mutadedModel #3/N SER 50
> color #3/N:50 yellow
> swapaa #3/N:51 PHE
Using Dunbrack library
mutadedModel #3/N TYR 51: phi -82.3, psi -32.2 trans
Applying PHE rotamer (chi angles: -71.7 103.3) to mutadedModel #3/N PHE 51
> color #3/N:51 yellow
> swapaa #3/N:52 ILE
Using Dunbrack library
mutadedModel #3/N LEU 52: phi -69.2, psi -47.9 trans
Applying ILE rotamer (chi angles: -62.6 -60.5) to mutadedModel #3/N ILE 52
> color #3/N:52 yellow
> swapaa #3/N:53 GLN
Using Dunbrack library
mutadedModel #3/N TYR 53: phi -100.2, psi -177.3 trans
Applying GLN rotamer (chi angles: -59.7 -63.7 -78.6) to mutadedModel #3/N GLN
53
> color #3/N:53 yellow
> swapaa #3/N:56 ARG
Using Dunbrack library
mutadedModel #3/N ASN 56: phi -68.6, psi 152.6 trans
Applying ARG rotamer (chi angles: -174.3 178.1 -178.6 -88.1) to mutadedModel
#3/N ARG 56
> color #3/N:56 yellow
> swapaa #3/N:57 PHE
Using Dunbrack library
mutadedModel #3/N TYR 57: phi -93.5, psi -24.0 trans
Applying PHE rotamer (chi angles: 63.6 106.5) to mutadedModel #3/N PHE 57
> color #3/N:57 yellow
> swapaa #3/N:58 ASP
Using Dunbrack library
mutadedModel #3/N ALA 58: phi -57.9, psi -31.1 trans
Applying ASP rotamer (chi angles: 59.3 11.0) to mutadedModel #3/N ASP 58
> color #3/N:58 yellow
> swapaa #3/N:59 ASN
Using Dunbrack library
mutadedModel #3/N PHE 59: phi -83.9, psi -15.5 trans
Applying ASN rotamer (chi angles: -71.0 -26.5) to mutadedModel #3/N ASN 59
> color #3/N:59 yellow
> swapaa #3/N:65 VAL
Using Dunbrack library
mutadedModel #3/N GLU 65: phi -72.6, psi -38.0 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/N VAL 65
> color #3/N:65 yellow
> swapaa #3/N:66 VAL
Using Dunbrack library
mutadedModel #3/N THR 66: phi -66.6, psi -44.0 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/N VAL 66
> color #3/N:66 yellow
> swapaa #3/N:68 ASN
Using Dunbrack library
mutadedModel #3/N LEU 68: phi -26.7, psi -8.2 trans
Applying ASN rotamer (chi angles: -70.4 -50.9) to mutadedModel #3/N ASN 68
> color #3/N:68 yellow
> swapaa #3/N:69 LEU
Using Dunbrack library
mutadedModel #3/N ASP 69: phi -81.9, psi -44.4 trans
Applying LEU rotamer (chi angles: -66.5 174.5) to mutadedModel #3/N LEU 69
> color #3/N:69 yellow
> swapaa #3/N:70 ILE
Using Dunbrack library
mutadedModel #3/N LEU 70: phi -58.6, psi -27.7 trans
Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/N ILE 70
> color #3/N:70 yellow
> swapaa #3/N:71 MET
Using Dunbrack library
mutadedModel #3/N PHE 71: phi -87.2, psi -19.2 trans
Applying MET rotamer (chi angles: -65.5 -62.5 97.9) to mutadedModel #3/N MET
71
> color #3/N:71 yellow
> swapaa #3/N:75 SER
Using Dunbrack library
mutadedModel #3/N ARG 75: phi -79.0, psi -26.6 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/N SER 75
> color #3/N:75 yellow
> swapaa #3/N:78 MET
Using Dunbrack library
mutadedModel #3/N PHE 78: phi -73.8, psi -30.9 trans
Applying MET rotamer (chi angles: -68.6 -56.5 -66.4) to mutadedModel #3/N MET
78
> color #3/N:78 yellow
> swapaa #3/N:82 MET
Using Dunbrack library
mutadedModel #3/N LEU 82: phi -82.3, psi -39.3 trans
Applying MET rotamer (chi angles: -180.0 -83.6 -71.5) to mutadedModel #3/N MET
82
> color #3/N:82 yellow
> swapaa #3/N:83 LEU
Using Dunbrack library
mutadedModel #3/N GLU 83: phi -65.2, psi -37.8 trans
Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/N LEU 83
> color #3/N:83 yellow
> swapaa #3/N:85 ASN
Using Dunbrack library
mutadedModel #3/N ILE 85: phi -26.5, psi 120.1 trans
Applying ASN rotamer (chi angles: -68.1 -33.5) to mutadedModel #3/N ASN 85
> color #3/N:85 yellow
> swapaa #3/N:86 MET
Using Dunbrack library
mutadedModel #3/N LEU 86: phi -117.9, psi 113.2 trans
Applying MET rotamer (chi angles: -62.3 -68.5 172.2) to mutadedModel #3/N MET
86
> color #3/N:86 yellow
> swapaa #3/N:88 TRP
Using Dunbrack library
mutadedModel #3/N TYR 88: phi -80.4, psi -16.0 trans
Applying TRP rotamer (chi angles: -69.2 105.7) to mutadedModel #3/N TRP 88
> color #3/N:88 yellow
> swapaa #3/N:90 GLN
Using Dunbrack library
mutadedModel #3/N LEU 90: phi -46.4, psi -48.3 trans
Applying GLN rotamer (chi angles: -70.2 176.5 -24.4) to mutadedModel #3/N GLN
90
> color #3/N:90 yellow
> swapaa #3/N:91 CYS
Using Dunbrack library
mutadedModel #3/N LEU 91: phi -60.2, psi -35.3 trans
Applying CYS rotamer (chi angles: -70.0) to mutadedModel #3/N CYS 91
> color #3/N:91 yellow
> swapaa #3/N:92 MET
Using Dunbrack library
mutadedModel #3/N LEU 92: phi -66.2, psi -35.3 trans
Applying MET rotamer (chi angles: -68.3 175.6 70.3) to mutadedModel #3/N MET
92
> color #3/N:92 yellow
> swapaa #3/N:94 CYS
Using Dunbrack library
mutadedModel #3/N LYS 94: phi -71.7, psi -40.6 trans
Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/N CYS 94
> color #3/N:94 yellow
> swapaa #3/N:95 ALA
Using Dunbrack library
Swapping mutadedModel #3/N GLU 95 to ALA
> color #3/N:95 yellow
> swapaa #3/N:97 TYR
Using Dunbrack library
mutadedModel #3/N LYS 97: phi -53.2, psi -46.6 trans
Applying TYR rotamer (chi angles: 176.9 80.4) to mutadedModel #3/N TYR 97
> color #3/N:97 yellow
> swapaa #3/N:98 LEU
Using Dunbrack library
mutadedModel #3/N ALA 98: phi -73.4, psi -25.3 trans
Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/N LEU 98
> color #3/N:98 yellow
> swapaa #3/N:99 PRO
Using Dunbrack library
mutadedModel #3/N THR 99: phi -83.6, psi -26.4 trans
Applying PRO rotamer (chi angles: -24.1 35.5) to mutadedModel #3/N PRO 99
> color #3/N:99 yellow
> swapaa #3/N:101 ILE
Using Dunbrack library
mutadedModel #3/N ASN 101: phi -33.3, psi 32.9 trans
Applying ILE rotamer (chi angles: 58.8 83.6) to mutadedModel #3/N ILE 101
> color #3/N:101 yellow
> swapaa #3/N:103 ILE
Using Dunbrack library
mutadedModel #3/N LEU 103: phi -32.6, psi 111.7 trans
Applying ILE rotamer (chi angles: -168.1 68.0) to mutadedModel #3/N ILE 103
> color #3/N:103 yellow
> swapaa #3/N:105 GLU
Using Dunbrack library
mutadedModel #3/N ALA 105: phi -107.5, psi -76.4 trans
Applying GLU rotamer (chi angles: -68.3 177.8 -7.2) to mutadedModel #3/N GLU
105
> color #3/N:105 yellow
> swapaa #3/N:107 ALA
Using Dunbrack library
Swapping mutadedModel #3/N GLU 107 to ALA
> color #3/N:107 yellow
> swapaa #3/N:108 GLN
Using Dunbrack library
mutadedModel #3/N LEU 108: phi -66.6, psi -37.4 trans
Applying GLN rotamer (chi angles: -69.0 176.9 64.2) to mutadedModel #3/N GLN
108
> color #3/N:108 yellow
> swapaa #3/N:109 ASN
Using Dunbrack library
mutadedModel #3/N GLU 109: phi -62.3, psi -40.0 trans
Applying ASN rotamer (chi angles: -73.2 -78.5) to mutadedModel #3/N ASN 109
> color #3/N:109 yellow
> swapaa #3/N:110 LYS
Using Dunbrack library
mutadedModel #3/N ALA 110: phi -60.9, psi -43.3 trans
Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to mutadedModel
#3/N LYS 110
> color #3/N:110 yellow
> swapaa #3/N:113 LYS
Using Dunbrack library
mutadedModel #3/N GLU 113: phi -66.2, psi -34.3 trans
Applying LYS rotamer (chi angles: -176.8 61.0 65.9 174.8) to mutadedModel #3/N
LYS 113
> color #3/N:113 yellow
> swapaa #3/N:115 MET
Using Dunbrack library
mutadedModel #3/N THR 115: phi -64.9, psi -37.1 trans
Applying MET rotamer (chi angles: -65.8 -60.5 97.9) to mutadedModel #3/N MET
115
> color #3/N:115 yellow
> swapaa #3/N:118 TYR
Using Dunbrack library
mutadedModel #3/N ARG 118: phi -74.3, psi -26.4 trans
Applying TYR rotamer (chi angles: -71.7 135.6) to mutadedModel #3/N TYR 118
> color #3/N:118 yellow
> swapaa #3/N:119 SER
Using Dunbrack library
mutadedModel #3/N PRO 119: phi -70.7, psi -26.4 trans
Applying SER rotamer (chi angles: -66.0) to mutadedModel #3/N SER 119
> color #3/N:119 yellow
> swapaa #3/N:120 TRP
Using Dunbrack library
mutadedModel #3/N ARG 120: phi -89.9, psi -20.6 trans
Applying TRP rotamer (chi angles: -67.8 -15.4) to mutadedModel #3/N TRP 120
> color #3/N:120 yellow
> swapaa #3/N:121 ASN
Using Dunbrack library
mutadedModel #3/N LEU 121: phi -118.6, psi 2.1 trans
Applying ASN rotamer (chi angles: -66.2 -83.2) to mutadedModel #3/N ASN 121
> color #3/N:121 yellow
> swapaa #3/N:122 LYS
Using Dunbrack library
mutadedModel #3/N ARG 122: phi -65.4, psi 118.6 trans
Applying LYS rotamer (chi angles: -169.7 -84.0 -179.2 -177.4) to mutadedModel
#3/N LYS 122
> color #3/N:122 yellow
> swapaa #3/N:123 PRO
Using Dunbrack library
mutadedModel #3/N VAL 123: phi -64.1, psi -65.8 trans
Applying PRO rotamer (chi angles: -27.5 37.7) to mutadedModel #3/N PRO 123
> color #3/N:123 yellow
> swapaa #3/N:125 ALA
Using Dunbrack library
Swapping mutadedModel #3/N SER 125 to ALA
> color #3/N:125 yellow
> swapaa #3/N:126 MET
Using Dunbrack library
mutadedModel #3/N GLN 126: phi -73.7, psi -39.5 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/N MET
126
> color #3/N:126 yellow
> swapaa #3/N:128 LYS
Using Dunbrack library
mutadedModel #3/N ARG 128: phi -85.7, psi 3.4 trans
Applying LYS rotamer (chi angles: -61.7 -63.7 -70.5 -68.2) to mutadedModel
#3/N LYS 128
> color #3/N:128 yellow
> swapaa #3/N:129 HIS
Using Dunbrack library
mutadedModel #3/N PHE 129: phi -82.1, psi 5.2 trans
Applying HIS rotamer (chi angles: 63.8 -98.7) to mutadedModel #3/N HIS 129
> color #3/N:129 yellow
> swapaa #3/N:130 HIS
Using Dunbrack library
mutadedModel #3/N PHE 130: phi -93.4, psi -8.4 trans
Applying HIS rotamer (chi angles: 63.4 -128.2) to mutadedModel #3/N HIS 130
> color #3/N:130 yellow
> swapaa #3/N:131 TYR
Using Dunbrack library
mutadedModel #3/N ARG 131: phi -135.6, psi 178.8 trans
Applying TYR rotamer (chi angles: -61.2 -2.8) to mutadedModel #3/N TYR 131
> color #3/N:131 yellow
> swapaa #3/N:134 THR
Using Dunbrack library
mutadedModel #3/N VAL 134: phi -86.0, psi 149.1 trans
Applying THR rotamer (chi angles: -61.3) to mutadedModel #3/N THR 134
> color #3/N:134 yellow
> swapaa #3/N:135 VAL
Using Dunbrack library
mutadedModel #3/N PRO 135: phi -68.7, psi 139.6 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/N VAL 135
> color #3/N:135 yellow
> swapaa #3/N:140 THR
Using Dunbrack library
mutadedModel #3/N VAL 140: phi -101.0, psi -6.7 trans
Applying THR rotamer (chi angles: 61.6) to mutadedModel #3/N THR 140
> color #3/N:140 yellow
> swapaa #3/N:141 GLU
Using Dunbrack library
mutadedModel #3/N LEU 141: phi -44.0, psi -23.9 trans
Applying GLU rotamer (chi angles: -69.4 177.7 -7.7) to mutadedModel #3/N GLU
141
> color #3/N:141 yellow
> swapaa #3/N:142 LYS
Using Dunbrack library
mutadedModel #3/N GLU 142: phi -76.2, psi -23.7 trans
Applying LYS rotamer (chi angles: -66.1 -173.9 -73.0 -66.8) to mutadedModel
#3/N LYS 142
> color #3/N:142 yellow
> swapaa #3/N:143 TYR
Using Dunbrack library
mutadedModel #3/N GLY 143: phi -99.4, psi 16.4 trans
Applying TYR rotamer (chi angles: -64.7 101.8) to mutadedModel #3/N TYR 143
> color #3/N:143 yellow
> swapaa #3/N:144 ILE
Using Dunbrack library
mutadedModel #3/N LEU 144: phi -88.6, psi 146.7 trans
Applying ILE rotamer (chi angles: -62.8 169.5) to mutadedModel #3/N ILE 144
> color #3/N:144 yellow
> swapaa #3/N:145 THR
Using Dunbrack library
mutadedModel #3/N ARG 145: phi -90.7, psi 134.8 trans
Applying THR rotamer (chi angles: 58.6) to mutadedModel #3/N THR 145
> color #3/N:145 yellow
> swapaa #3/N:146 GLU
Using Dunbrack library
mutadedModel #3/N SER 146: phi -56.1, psi 171.9 trans
Applying GLU rotamer (chi angles: 70.4 -82.2 10.3) to mutadedModel #3/N GLU
146
> color #3/N:146 yellow
> swapaa #3/N:147 MET
Using Dunbrack library
mutadedModel #3/N GLY 147: phi -166.5, psi none trans
Applying MET rotamer (chi angles: -174.6 179.7 -71.6) to mutadedModel #3/N MET
147
> color #3/N:147 yellow
> select #3/4
3464 atoms, 3487 bonds, 3 pseudobonds, 453 residues, 2 models selected
> bond #3/4:30@C #3/4:31@N reasonable false
Created 0 bonds
> bond #3/4:31@C #3/4:32@N reasonable false
Created 0 bonds
> bond #3/4:32@C #3/4:33@N reasonable false
Created 1 bond
> bond #3/4:272@C #3/4:273@N reasonable false
Created 0 bonds
> bond #3/4:273@C #3/4:274@N reasonable false
Created 1 bond
> bond #3/4:274@C #3/4:275@N reasonable false
Created 0 bonds
> bond #3/4:275@C #3/4:276@N reasonable false
Created 0 bonds
> bond #3/4:276@C #3/4:277@N reasonable false
Created 0 bonds
> bond #3/4:277@C #3/4:278@N reasonable false
Created 0 bonds
> bond #3/4:278@C #3/4:279@N reasonable false
Created 0 bonds
> bond #3/4:279@C #3/4:280@N reasonable false
Created 0 bonds
> bond #3/4:280@C #3/4:281@N reasonable false
Created 0 bonds
> bond #3/4:281@C #3/4:282@N reasonable false
Created 0 bonds
> bond #3/4:282@C #3/4:283@N reasonable false
Created 0 bonds
> bond #3/4:283@C #3/4:284@N reasonable false
Created 0 bonds
> bond #3/4:284@C #3/4:285@N reasonable false
Created 0 bonds
> bond #3/4:285@C #3/4:286@N reasonable false
Created 1 bond
> bond #3/4:291@C #3/4:292@N reasonable false
Created 0 bonds
> bond #3/4:292@C #3/4:293@N reasonable false
Created 0 bonds
> bond #3/4:293@C #3/4:294@N reasonable false
Created 0 bonds
> bond #3/4:294@C #3/4:295@N reasonable false
Created 0 bonds
> bond #3/4:295@C #3/4:296@N reasonable false
Created 0 bonds
> bond #3/4:296@C #3/4:297@N reasonable false
Created 0 bonds
> bond #3/4:297@C #3/4:298@N reasonable false
Created 0 bonds
> bond #3/4:298@C #3/4:299@N reasonable false
Created 0 bonds
> bond #3/4:299@C #3/4:300@N reasonable false
Created 0 bonds
> bond #3/4:300@C #3/4:301@N reasonable false
Created 0 bonds
> bond #3/4:301@C #3/4:302@N reasonable false
Created 0 bonds
> bond #3/4:302@C #3/4:303@N reasonable false
Created 0 bonds
> bond #3/4:303@C #3/4:304@N reasonable false
Created 1 bond
> bond #3/4:144@C #3/4:145@N reasonable false
Created 0 bonds
> bond #3/4:145@C #3/4:146@N reasonable false
Created 0 bonds
> bond #3/4:146@C #3/4:147@N reasonable false
Created 0 bonds
> bond #3/4:147@C #3/4:148@N reasonable false
Created 0 bonds
> bond #3/4:148@C #3/4:149@N reasonable false
Created 0 bonds
> bond #3/4:149@C #3/4:150@N reasonable false
Created 0 bonds
> bond #3/4:150@C #3/4:151@N reasonable false
Created 0 bonds
> bond #3/4:151@C #3/4:152@N reasonable false
Created 1 bond
> bond #3/4:200@C #3/4:201@N reasonable false
Created 0 bonds
> bond #3/4:201@C #3/4:202@N reasonable false
Created 0 bonds
> bond #3/4:202@C #3/4:203@N reasonable false
Created 0 bonds
> bond #3/4:203@C #3/4:204@N reasonable false
Created 0 bonds
> bond #3/4:204@C #3/4:205@N reasonable false
Created 0 bonds
> bond #3/4:205@C #3/4:206@N reasonable false
Created 0 bonds
> bond #3/4:206@C #3/4:207@N reasonable false
Created 0 bonds
> bond #3/4:207@C #3/4:208@N reasonable false
Created 0 bonds
> bond #3/4:208@C #3/4:209@N reasonable false
Created 0 bonds
> bond #3/4:209@C #3/4:210@N reasonable false
Created 0 bonds
> bond #3/4:210@C #3/4:211@N reasonable false
Created 0 bonds
> bond #3/4:211@C #3/4:212@N reasonable false
Created 0 bonds
> bond #3/4:212@C #3/4:213@N reasonable false
Created 0 bonds
> bond #3/4:213@C #3/4:214@N reasonable false
Created 0 bonds
> bond #3/4:214@C #3/4:215@N reasonable false
Created 0 bonds
> bond #3/4:215@C #3/4:216@N reasonable false
Created 0 bonds
> bond #3/4:216@C #3/4:217@N reasonable false
Created 0 bonds
> bond #3/4:217@C #3/4:218@N reasonable false
Created 0 bonds
> bond #3/4:218@C #3/4:219@N reasonable false
Created 0 bonds
> bond #3/4:219@C #3/4:220@N reasonable false
Created 0 bonds
> bond #3/4:220@C #3/4:221@N reasonable false
Created 0 bonds
> bond #3/4:221@C #3/4:222@N reasonable false
Created 0 bonds
> bond #3/4:222@C #3/4:223@N reasonable false
Created 0 bonds
> bond #3/4:223@C #3/4:224@N reasonable false
Created 0 bonds
> bond #3/4:224@C #3/4:225@N reasonable false
Created 0 bonds
> bond #3/4:225@C #3/4:226@N reasonable false
Created 0 bonds
> bond #3/4:226@C #3/4:227@N reasonable false
Created 0 bonds
> bond #3/4:227@C #3/4:228@N reasonable false
Created 0 bonds
> bond #3/4:228@C #3/4:229@N reasonable false
Created 0 bonds
> bond #3/4:229@C #3/4:230@N reasonable false
Created 0 bonds
> bond #3/4:230@C #3/4:231@N reasonable false
Created 0 bonds
> bond #3/4:231@C #3/4:232@N reasonable false
Created 0 bonds
> bond #3/4:232@C #3/4:233@N reasonable false
Created 0 bonds
> bond #3/4:233@C #3/4:234@N reasonable false
Created 0 bonds
> bond #3/4:234@C #3/4:235@N reasonable false
Created 0 bonds
> bond #3/4:235@C #3/4:236@N reasonable false
Created 0 bonds
> bond #3/4:236@C #3/4:237@N reasonable false
Created 0 bonds
> bond #3/4:237@C #3/4:238@N reasonable false
Created 0 bonds
> bond #3/4:238@C #3/4:239@N reasonable false
Created 0 bonds
> bond #3/4:239@C #3/4:240@N reasonable false
Created 0 bonds
> bond #3/4:240@C #3/4:241@N reasonable false
Created 0 bonds
> bond #3/4:241@C #3/4:242@N reasonable false
Created 0 bonds
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> bond #3/4:188@C #3/4:189@N reasonable false
Created 0 bonds
> bond #3/4:189@C #3/4:190@N reasonable false
Created 0 bonds
> bond #3/4:190@C #3/4:191@N reasonable false
Created 0 bonds
> bond #3/4:191@C #3/4:192@N reasonable false
Created 0 bonds
> bond #3/4:192@C #3/4:193@N reasonable false
Created 0 bonds
> bond #3/4:193@C #3/4:194@N reasonable false
Created 0 bonds
> bond #3/4:194@C #3/4:195@N reasonable false
Created 0 bonds
> bond #3/4:195@C #3/4:196@N reasonable false
Created 0 bonds
> bond #3/4:196@C #3/4:197@N reasonable false
Created 0 bonds
> bond #3/4:197@C #3/4:198@N reasonable false
Created 0 bonds
> bond #3/4:57@C #3/4:58@N reasonable false
Created 0 bonds
> bond #3/4:58@C #3/4:59@N reasonable false
Created 0 bonds
> bond #3/4:59@C #3/4:60@N reasonable false
Created 0 bonds
> bond #3/4:60@C #3/4:61@N reasonable false
Created 0 bonds
> bond #3/4:61@C #3/4:62@N reasonable false
Created 0 bonds
> bond #3/4:62@C #3/4:63@N reasonable false
Created 0 bonds
> bond #3/4:63@C #3/4:64@N reasonable false
Created 0 bonds
> bond #3/4:64@C #3/4:65@N reasonable false
Created 0 bonds
> bond #3/4:65@C #3/4:66@N reasonable false
Created 0 bonds
> bond #3/4:66@C #3/4:67@N reasonable false
Created 0 bonds
> bond #3/4:67@C #3/4:68@N reasonable false
Created 0 bonds
> bond #3/4:68@C #3/4:69@N reasonable false
Created 0 bonds
> bond #3/4:69@C #3/4:70@N reasonable false
Created 0 bonds
> bond #3/4:70@C #3/4:71@N reasonable false
Created 1 bond
> bond #3/4:476@C #3/4:477@N reasonable false
Created 0 bonds
> bond #3/4:477@C #3/4:478@N reasonable false
Created 0 bonds
> bond #3/4:478@C #3/4:479@N reasonable false
Created 1 bond
> bond #3/4:381@C #3/4:382@N reasonable false
Created 0 bonds
> bond #3/4:382@C #3/4:383@N reasonable false
Created 0 bonds
> bond #3/4:383@C #3/4:384@N reasonable false
Created 0 bonds
> bond #3/4:356@C #3/4:357@N reasonable false
Created 0 bonds
> bond #3/4:357@C #3/4:358@N reasonable false
Created 0 bonds
> bond #3/4:358@C #3/4:359@N reasonable false
Created 0 bonds
> bond #3/4:359@C #3/4:360@N reasonable false
Created 0 bonds
> bond #3/4:360@C #3/4:361@N reasonable false
Created 0 bonds
> bond #3/4:361@C #3/4:362@N reasonable false
Created 0 bonds
> bond #3/4:362@C #3/4:363@N reasonable false
Created 0 bonds
> bond #3/4:363@C #3/4:364@N reasonable false
Created 0 bonds
> bond #3/4:364@C #3/4:365@N reasonable false
Created 0 bonds
> bond #3/4:365@C #3/4:366@N reasonable false
Created 0 bonds
> bond #3/4:366@C #3/4:367@N reasonable false
Created 0 bonds
> bond #3/4:367@C #3/4:368@N reasonable false
Created 0 bonds
> bond #3/4:368@C #3/4:369@N reasonable false
Created 0 bonds
> bond #3/4:369@C #3/4:370@N reasonable false
Created 0 bonds
> bond #3/4:370@C #3/4:371@N reasonable false
Created 0 bonds
> bond #3/4:371@C #3/4:372@N reasonable false
Created 0 bonds
> bond #3/4:372@C #3/4:373@N reasonable false
Created 0 bonds
> bond #3/4:373@C #3/4:374@N reasonable false
Created 0 bonds
> bond #3/4:374@C #3/4:375@N reasonable false
Created 0 bonds
> bond #3/4:375@C #3/4:376@N reasonable false
Created 0 bonds
> bond #3/4:376@C #3/4:377@N reasonable false
Created 0 bonds
> bond #3/4:377@C #3/4:378@N reasonable false
Created 0 bonds
> bond #3/4:378@C #3/4:379@N reasonable false
Created 0 bonds
> bond #3/4:379@C #3/4:380@N reasonable false
Created 1 bond
> bond #3/4:71@C #3/4:72@N reasonable false
Created 0 bonds
> bond #3/4:72@C #3/4:73@N reasonable false
Created 0 bonds
> bond #3/4:73@C #3/4:74@N reasonable false
Created 0 bonds
> bond #3/4:74@C #3/4:75@N reasonable false
Created 0 bonds
> bond #3/4:75@C #3/4:76@N reasonable false
Created 1 bond
> bond #3/4:524@C #3/4:525@N reasonable false
Created 0 bonds
> bond #3/4:525@C #3/4:526@N reasonable false
Created 0 bonds
> bond #3/4:304@C #3/4:305@N reasonable false
Created 0 bonds
> bond #3/4:305@C #3/4:306@N reasonable false
Created 0 bonds
> swapaa #3/4:25 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 25: phi none, psi 97.8 trans
Applying TYR rotamer (chi angles: -174.2 21.0) to mutadedModel #3/4 TYR 25
> color #3/4:25 yellow
> swapaa #3/4:27 TYR
Using Dunbrack library
mutadedModel #3/4 ARG 27: phi -85.4, psi 14.2 trans
Applying TYR rotamer (chi angles: -176.0 -12.7) to mutadedModel #3/4 TYR 27
> color #3/4:27 yellow
> swapaa #3/4:28 LYS
Using Dunbrack library
mutadedModel #3/4 ASP 28: phi -39.4, psi 79.7 trans
Applying LYS rotamer (chi angles: -66.5 -178.0 -177.3 -64.6) to mutadedModel
#3/4 LYS 28
> color #3/4:28 yellow
> swapaa #3/4:30 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 PRO 30 to GLY
> color #3/4:30 yellow
> swapaa #3/4:31 GLN
Using Dunbrack library
mutadedModel #3/4 LEU 31: phi -82.0, psi -5.5 trans
Applying GLN rotamer (chi angles: 70.5 -84.6 179.6) to mutadedModel #3/4 GLN
31
> color #3/4:31 yellow
> swapaa #3/4:32 THR
Using Dunbrack library
mutadedModel #3/4 ALA 32: phi -73.7, psi -20.3 trans
Applying THR rotamer (chi angles: -166.9) to mutadedModel #3/4 THR 32
> color #3/4:32 yellow
> swapaa #3/4:33 PRO
Using Dunbrack library
mutadedModel #3/4 SER 33: phi -90.9, psi -174.9 trans
Applying PRO rotamer (chi angles: -23.8 35.4) to mutadedModel #3/4 PRO 33
> color #3/4:33 yellow
> swapaa #3/4:34 LEU
Using Dunbrack library
mutadedModel #3/4 MET 34: phi -73.1, psi 14.8 trans
Applying LEU rotamer (chi angles: -64.8 175.2) to mutadedModel #3/4 LEU 34
> color #3/4:34 yellow
> swapaa #3/4:35 SER
Using Dunbrack library
mutadedModel #3/4 THR 35: phi -96.9, psi -21.5 trans
Applying SER rotamer (chi angles: 64.1) to mutadedModel #3/4 SER 35
> color #3/4:35 yellow
> swapaa #3/4:36 GLN
Using Dunbrack library
mutadedModel #3/4 ASN 36: phi -99.6, psi 155.3 trans
Applying GLN rotamer (chi angles: -59.5 -63.5 -110.4) to mutadedModel #3/4 GLN
36
> color #3/4:36 yellow
> swapaa #3/4:38 PHE
Using Dunbrack library
mutadedModel #3/4 ALA 38: phi -138.0, psi 18.6 cis
Applying PHE rotamer (chi angles: -62.2 101.4) to mutadedModel #3/4 PHE 38
> color #3/4:38 yellow
> swapaa #3/4:39 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 SER 39 to GLY
> color #3/4:39 yellow
> swapaa #3/4:40 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 VAL 40 to GLY
> color #3/4:40 yellow
> swapaa #3/4:57 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 57 to ALA
> color #3/4:57 yellow
> swapaa #3/4:58 LYS
Using Dunbrack library
mutadedModel #3/4 GLY 58: phi 102.5, psi -100.2 cis
Applying LYS rotamer (chi angles: -175.1 -178.4 -70.5 -175.7) to mutadedModel
#3/4 LYS 58
> color #3/4:58 yellow
> swapaa #3/4:59 LYS
Using Dunbrack library
mutadedModel #3/4 GLY 59: phi -114.5, psi 146.2 trans
Applying LYS rotamer (chi angles: -176.5 177.4 -176.1 -65.3) to mutadedModel
#3/4 LYS 59
> color #3/4:59 yellow
> swapaa #3/4:60 VAL
Using Dunbrack library
mutadedModel #3/4 ILE 60: phi -67.6, psi 115.9 trans
Applying VAL rotamer (chi angles: 176.1) to mutadedModel #3/4 VAL 60
> color #3/4:60 yellow
> swapaa #3/4:61 GLU
Using Dunbrack library
mutadedModel #3/4 SER 61: phi -92.3, psi 161.9 trans
Applying GLU rotamer (chi angles: -175.4 66.5 -76.0) to mutadedModel #3/4 GLU
61
> color #3/4:61 yellow
> swapaa #3/4:62 ILE
Using Dunbrack library
mutadedModel #3/4 VAL 62: phi -136.5, psi 136.2 trans
Applying ILE rotamer (chi angles: 58.8 172.1) to mutadedModel #3/4 ILE 62
> color #3/4:62 yellow
> swapaa #3/4:63 THR
Using Dunbrack library
mutadedModel #3/4 VAL 63: phi -135.6, psi 145.5 trans
Applying THR rotamer (chi angles: 62.9) to mutadedModel #3/4 THR 63
> color #3/4:63 yellow
> swapaa #3/4:64 LYS
Using Dunbrack library
mutadedModel #3/4 GLU 64: phi -107.1, psi 118.0 trans
Applying LYS rotamer (chi angles: 62.9 85.9 -178.0 62.2) to mutadedModel #3/4
LYS 64
> color #3/4:64 yellow
> swapaa #3/4:66 HIS
Using Dunbrack library
mutadedModel #3/4 PRO 66: phi -57.3, psi -20.8 trans
Applying HIS rotamer (chi angles: 67.6 -78.2) to mutadedModel #3/4 HIS 66
> color #3/4:66 yellow
> swapaa #3/4:67 ASN
Using Dunbrack library
mutadedModel #3/4 LEU 67: phi -91.2, psi -1.9 trans
Applying ASN rotamer (chi angles: 65.2 -4.5) to mutadedModel #3/4 ASN 67
> color #3/4:67 yellow
> swapaa #3/4:71 VAL
Using Dunbrack library
mutadedModel #3/4 LEU 71: phi 46.2, psi 163.2 cis
Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/4 VAL 71
> color #3/4:71 yellow
> swapaa #3/4:72 ILE
Using Dunbrack library
mutadedModel #3/4 TYR 72: phi -106.5, psi -95.9 trans
Applying ILE rotamer (chi angles: -66.0 169.1) to mutadedModel #3/4 ILE 72
> color #3/4:72 yellow
> swapaa #3/4:73 THR
Using Dunbrack library
mutadedModel #3/4 VAL 73: phi 170.9, psi 117.3 trans
Applying THR rotamer (chi angles: 61.4) to mutadedModel #3/4 THR 73
> color #3/4:73 yellow
> swapaa #3/4:74 HIS
Using Dunbrack library
mutadedModel #3/4 ARG 74: phi -121.0, psi 86.8 trans
Applying HIS rotamer (chi angles: -175.7 -168.0) to mutadedModel #3/4 HIS 74
> color #3/4:74 yellow
> swapaa #3/4:75 ASN
Using Dunbrack library
mutadedModel #3/4 LEU 75: phi -122.3, psi -3.7 trans
Applying ASN rotamer (chi angles: 63.8 3.5) to mutadedModel #3/4 ASN 75
> color #3/4:75 yellow
> swapaa #3/4:76 LEU
Using Dunbrack library
mutadedModel #3/4 VAL 76: phi 96.2, psi 111.9 trans
Applying LEU rotamer (chi angles: -64.2 174.4) to mutadedModel #3/4 LEU 76
> color #3/4:76 yellow
> swapaa #3/4:77 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 GLU 77 to GLY
> color #3/4:77 yellow
> swapaa #3/4:79 PRO
Using Dunbrack library
mutadedModel #3/4 GLY 79: phi -94.1, psi -99.3 trans
Applying PRO rotamer (chi angles: 27.2 -34.5) to mutadedModel #3/4 PRO 79
> color #3/4:79 yellow
> swapaa #3/4:80 SER
Using Dunbrack library
mutadedModel #3/4 THR 80: phi -15.9, psi 129.3 trans
Applying SER rotamer (chi angles: 176.1) to mutadedModel #3/4 SER 80
> color #3/4:80 yellow
> swapaa #3/4:81 VAL
Using Dunbrack library
mutadedModel #3/4 ALA 81: phi -85.9, psi 138.5 trans
Applying VAL rotamer (chi angles: -62.3) to mutadedModel #3/4 VAL 81
> color #3/4:81 yellow
> swapaa #3/4:82 SER
Using Dunbrack library
mutadedModel #3/4 ALA 82: phi -105.1, psi 116.8 trans
Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/4 SER 82
> color #3/4:82 yellow
> swapaa #3/4:85 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 ASP 85 to ALA
> color #3/4:85 yellow
> swapaa #3/4:87 ILE
Using Dunbrack library
mutadedModel #3/4 ALA 87: phi 52.3, psi 104.8 cis
Applying ILE rotamer (chi angles: 61.9 171.0) to mutadedModel #3/4 ILE 87
> color #3/4:87 yellow
> swapaa #3/4:88 LEU
Using Dunbrack library
mutadedModel #3/4 TYR 88: phi -90.9, psi 105.0 trans
Applying LEU rotamer (chi angles: -164.6 165.7) to mutadedModel #3/4 LEU 88
> color #3/4:88 yellow
> swapaa #3/4:91 PRO
Using Dunbrack library
mutadedModel #3/4 VAL 91: phi -79.6, psi -50.9 trans
Applying PRO rotamer (chi angles: -26.8 37.2) to mutadedModel #3/4 PRO 91
> color #3/4:91 yellow
> swapaa #3/4:92 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 92 to ALA
> color #3/4:92 yellow
> swapaa #3/4:93 TYR
Using Dunbrack library
mutadedModel #3/4 GLN 93: phi -103.5, psi 33.2 trans
Applying TYR rotamer (chi angles: -64.4 77.6) to mutadedModel #3/4 TYR 93
> color #3/4:93 yellow
> swapaa #3/4:94 ASP
Using Dunbrack library
mutadedModel #3/4 SER 94: phi -87.6, psi 179.4 trans
Applying ASP rotamer (chi angles: -68.4 72.6) to mutadedModel #3/4 ASP 94
> color #3/4:94 yellow
> swapaa #3/4:97 SER
Using Dunbrack library
mutadedModel #3/4 ASP 97: phi -68.8, psi -8.6 trans
Applying SER rotamer (chi angles: 66.9) to mutadedModel #3/4 SER 97
> color #3/4:97 yellow
> swapaa #3/4:98 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 THR 98 to ALA
> color #3/4:98 yellow
> swapaa #3/4:100 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 ARG 100 to GLY
> color #3/4:100 yellow
> swapaa #3/4:101 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 CYS 101 to ALA
> color #3/4:101 yellow
> swapaa #3/4:102 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 ALA 102 to GLY
> color #3/4:102 yellow
> swapaa #3/4:103 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 PHE 103 to ALA
> color #3/4:103 yellow
> swapaa #3/4:106 HIS
Using Dunbrack library
mutadedModel #3/4 ARG 106: phi -56.7, psi -42.7 trans
Applying HIS rotamer (chi angles: 66.5 125.6) to mutadedModel #3/4 HIS 106
> color #3/4:106 yellow
> swapaa #3/4:107 LEU
Using Dunbrack library
mutadedModel #3/4 GLN 107: phi -71.7, psi -33.0 trans
Applying LEU rotamer (chi angles: -174.2 -78.7) to mutadedModel #3/4 LEU 107
> color #3/4:107 yellow
> swapaa #3/4:108 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 PRO 108 to ALA
> color #3/4:108 yellow
> swapaa #3/4:110 THR
Using Dunbrack library
mutadedModel #3/4 GLU 110: phi -84.8, psi -26.8 trans
Applying THR rotamer (chi angles: -169.0) to mutadedModel #3/4 THR 110
> color #3/4:110 yellow
> swapaa #3/4:112 SER
Using Dunbrack library
mutadedModel #3/4 PRO 112: phi -75.4, psi 141.6 trans
Applying SER rotamer (chi angles: -64.1) to mutadedModel #3/4 SER 112
> color #3/4:112 yellow
> swapaa #3/4:114 TYR
Using Dunbrack library
mutadedModel #3/4 GLN 114: phi -85.5, psi -15.3 trans
Applying TYR rotamer (chi angles: -67.4 104.3) to mutadedModel #3/4 TYR 114
> color #3/4:114 yellow
> swapaa #3/4:118 LEU
Using Dunbrack library
mutadedModel #3/4 GLU 118: phi -75.0, psi -34.7 trans
Applying LEU rotamer (chi angles: -174.2 -78.7) to mutadedModel #3/4 LEU 118
> color #3/4:118 yellow
> swapaa #3/4:120 GLN
Using Dunbrack library
mutadedModel #3/4 LEU 120: phi -26.2, psi -22.6 trans
Applying GLN rotamer (chi angles: -175.3 65.4 104.6) to mutadedModel #3/4 GLN
120
> color #3/4:120 yellow
> swapaa #3/4:122 ASP
Using Dunbrack library
mutadedModel #3/4 VAL 122: phi -83.9, psi 16.8 trans
Applying ASP rotamer (chi angles: -67.9 -25.9) to mutadedModel #3/4 ASP 122
> color #3/4:122 yellow
> swapaa #3/4:124 ASN
Using Dunbrack library
mutadedModel #3/4 ILE 124: phi -86.0, psi -23.6 trans
Applying ASN rotamer (chi angles: -68.9 -30.6) to mutadedModel #3/4 ASN 124
> color #3/4:124 yellow
> swapaa #3/4:125 ILE
Using Dunbrack library
mutadedModel #3/4 ARG 125: phi -89.4, psi -76.9 trans
Applying ILE rotamer (chi angles: 61.9 171.0) to mutadedModel #3/4 ILE 125
> color #3/4:125 yellow
> swapaa #3/4:126 ARG
Using Dunbrack library
mutadedModel #3/4 GLY 126: phi -157.5, psi 129.7 trans
Applying ARG rotamer (chi angles: 54.1 81.4 -95.3 165.3) to mutadedModel #3/4
ARG 126
> color #3/4:126 yellow
> swapaa #3/4:128 VAL
Using Dunbrack library
mutadedModel #3/4 ILE 128: phi -96.0, psi -10.4 trans
Applying VAL rotamer (chi angles: -59.6) to mutadedModel #3/4 VAL 128
> color #3/4:128 yellow
> swapaa #3/4:132 GLN
Using Dunbrack library
mutadedModel #3/4 LEU 132: phi -110.0, psi 137.9 trans
Applying GLN rotamer (chi angles: 179.0 69.5 53.5) to mutadedModel #3/4 GLN
132
> color #3/4:132 yellow
> swapaa #3/4:134 HIS
Using Dunbrack library
mutadedModel #3/4 GLN 134: phi -90.9, psi 131.5 trans
Applying HIS rotamer (chi angles: 65.6 -44.9) to mutadedModel #3/4 HIS 134
> color #3/4:134 yellow
> swapaa #3/4:135 PHE
Using Dunbrack library
mutadedModel #3/4 ARG 135: phi -107.0, psi -161.3 trans
Applying PHE rotamer (chi angles: -178.2 51.9) to mutadedModel #3/4 PHE 135
> color #3/4:135 yellow
> swapaa #3/4:136 GLU
Using Dunbrack library
mutadedModel #3/4 LYS 136: phi -158.4, psi 109.2 trans
Applying GLU rotamer (chi angles: -63.9 -179.5 55.9) to mutadedModel #3/4 GLU
136
> color #3/4:136 yellow
> swapaa #3/4:137 LYS
Using Dunbrack library
mutadedModel #3/4 GLU 137: phi -88.6, psi -91.4 trans
Applying LYS rotamer (chi angles: 65.9 176.9 70.7 173.4) to mutadedModel #3/4
LYS 137
> color #3/4:137 yellow
> swapaa #3/4:139 LYS
Using Dunbrack library
mutadedModel #3/4 PHE 139: phi -98.9, psi 5.0 trans
Applying LYS rotamer (chi angles: -177.1 176.6 179.1 180.0) to mutadedModel
#3/4 LYS 139
> color #3/4:139 yellow
> swapaa #3/4:140 HIS
Using Dunbrack library
mutadedModel #3/4 LYS 140: phi -107.9, psi -15.6 trans
Applying HIS rotamer (chi angles: -63.6 -129.1) to mutadedModel #3/4 HIS 140
> color #3/4:140 yellow
> swapaa #3/4:142 ILE
Using Dunbrack library
mutadedModel #3/4 LEU 142: phi -118.1, psi 127.6 trans
Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/4 ILE 142
> color #3/4:142 yellow
> swapaa #3/4:143 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 SER 143 to GLY
> color #3/4:143 yellow
> swapaa #3/4:144 ILE
Using Dunbrack library
mutadedModel #3/4 PHE 144: phi -115.5, psi 102.5 trans
Applying ILE rotamer (chi angles: -58.4 172.2) to mutadedModel #3/4 ILE 144
> color #3/4:144 yellow
> swapaa #3/4:145 ARG
Using Dunbrack library
mutadedModel #3/4 LEU 145: phi -106.3, psi 127.8 trans
Applying ARG rotamer (chi angles: -176.2 178.2 67.2 -172.6) to mutadedModel
#3/4 ARG 145
> color #3/4:145 yellow
> swapaa #3/4:146 ILE
Using Dunbrack library
mutadedModel #3/4 CYS 146: phi -124.1, psi 131.3 trans
Applying ILE rotamer (chi angles: -177.4 70.3) to mutadedModel #3/4 ILE 146
> color #3/4:146 yellow
> swapaa #3/4:147 ASP
Using Dunbrack library
mutadedModel #3/4 THR 147: phi -122.9, psi 152.9 trans
Applying ASP rotamer (chi angles: -65.1 -40.1) to mutadedModel #3/4 ASP 147
> color #3/4:147 yellow
> swapaa #3/4:148 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 148 to ALA
> color #3/4:148 yellow
> swapaa #3/4:150 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 ARG 150 to ALA
> color #3/4:150 yellow
> swapaa #3/4:151 ASP
Using Dunbrack library
mutadedModel #3/4 GLY 151: phi -13.8, psi 14.6 trans
Applying ASP rotamer (chi angles: -172.5 -6.2) to mutadedModel #3/4 ASP 151
> color #3/4:151 yellow
> swapaa #3/4:152 LYS
Using Dunbrack library
mutadedModel #3/4 LEU 152: phi 115.6, psi -92.3 trans
Applying LYS rotamer (chi angles: -174.2 178.4 -68.9 -68.5) to mutadedModel
#3/4 LYS 152
> color #3/4:152 yellow
> swapaa #3/4:153 TRP
Using Dunbrack library
mutadedModel #3/4 ASN 153: phi -101.2, psi 4.7 cis
Applying TRP rotamer (chi angles: -65.7 -130.0) to mutadedModel #3/4 TRP 153
> color #3/4:153 yellow
> swapaa #3/4:154 LYS
Using Dunbrack library
mutadedModel #3/4 ASP 154: phi 151.5, psi 1.2 trans
Applying LYS rotamer (chi angles: -61.1 -66.1 -174.2 -67.0) to mutadedModel
#3/4 LYS 154
> color #3/4:154 yellow
> swapaa #3/4:155 SER
Using Dunbrack library
mutadedModel #3/4 ALA 155: phi -21.2, psi 51.7 trans
Applying SER rotamer (chi angles: -64.2) to mutadedModel #3/4 SER 155
> color #3/4:155 yellow
> swapaa #3/4:156 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 SER 156 to ALA
> color #3/4:156 yellow
> swapaa #3/4:181 ASN
Using Dunbrack library
mutadedModel #3/4 THR 181: phi none, psi 4.9 trans
Applying ASN rotamer (chi angles: -77.3 -137.6) to mutadedModel #3/4 ASN 181
> color #3/4:181 yellow
> swapaa #3/4:182 LEU
Using Dunbrack library
mutadedModel #3/4 ILE 182: phi -91.0, psi -51.5 trans
Applying LEU rotamer (chi angles: -86.5 61.2) to mutadedModel #3/4 LEU 182
> color #3/4:182 yellow
> swapaa #3/4:184 GLN
Using Dunbrack library
mutadedModel #3/4 THR 184: phi -79.0, psi -18.2 trans
Applying GLN rotamer (chi angles: -64.7 80.1 -18.5) to mutadedModel #3/4 GLN
184
> color #3/4:184 yellow
> swapaa #3/4:185 ASP
Using Dunbrack library
mutadedModel #3/4 VAL 185: phi -72.5, psi -30.6 trans
Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/4 ASP 185
> color #3/4:185 yellow
> swapaa #3/4:187 ILE
Using Dunbrack library
mutadedModel #3/4 ARG 187: phi -82.0, psi -46.0 trans
Applying ILE rotamer (chi angles: -65.5 168.9) to mutadedModel #3/4 ILE 187
> color #3/4:187 yellow
> swapaa #3/4:188 PHE
Using Dunbrack library
mutadedModel #3/4 THR 188: phi -71.8, psi -21.8 trans
Applying PHE rotamer (chi angles: -72.3 131.9) to mutadedModel #3/4 PHE 188
> color #3/4:188 yellow
> swapaa #3/4:189 THR
Using Dunbrack library
mutadedModel #3/4 GLY 189: phi -75.5, psi -20.6 trans
Applying THR rotamer (chi angles: 61.3) to mutadedModel #3/4 THR 189
> color #3/4:189 yellow
> swapaa #3/4:190 CYS
Using Dunbrack library
mutadedModel #3/4 GLU 190: phi -88.8, psi -37.0 trans
Applying CYS rotamer (chi angles: -67.1) to mutadedModel #3/4 CYS 190
> color #3/4:190 yellow
> swapaa #3/4:191 ILE
Using Dunbrack library
mutadedModel #3/4 ARG 191: phi -92.8, psi -16.5 trans
Applying ILE rotamer (chi angles: -66.9 168.8) to mutadedModel #3/4 ILE 191
> color #3/4:191 yellow
> swapaa #3/4:193 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 PRO 193 to ALA
> color #3/4:193 yellow
> swapaa #3/4:194 PRO
Using Dunbrack library
mutadedModel #3/4 LYS 194: phi -112.4, psi 52.8 trans
Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/4 PRO 194
> color #3/4:194 yellow
> swapaa #3/4:195 ARG
Using Dunbrack library
mutadedModel #3/4 TYR 195: phi -42.1, psi 72.0 trans
Applying ARG rotamer (chi angles: 85.3 -76.0 87.4 -178.1) to mutadedModel #3/4
ARG 195
> color #3/4:195 yellow
> swapaa #3/4:196 PHE
Using Dunbrack library
mutadedModel #3/4 HIS 196: phi -84.1, psi 123.3 trans
Applying PHE rotamer (chi angles: -69.5 -28.4) to mutadedModel #3/4 PHE 196
> color #3/4:196 yellow
> swapaa #3/4:197 HIS
Using Dunbrack library
mutadedModel #3/4 GLU 197: phi -68.9, psi -40.1 trans
Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/4 HIS 197
> color #3/4:197 yellow
> swapaa #3/4:198 GLU
Using Dunbrack library
mutadedModel #3/4 SER 198: phi -86.4, psi none trans
Applying GLU rotamer (chi angles: 65.1 -74.4 -51.1) to mutadedModel #3/4 GLU
198
> color #3/4:198 yellow
> swapaa #3/4:201 VAL
Using Dunbrack library
mutadedModel #3/4 LEU 201: phi -80.4, psi -40.5 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/4 VAL 201
> color #3/4:201 yellow
> swapaa #3/4:206 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 206: phi -71.9, psi -24.0 trans
Applying ASP rotamer (chi angles: -70.7 76.5) to mutadedModel #3/4 ASP 206
> color #3/4:206 yellow
> swapaa #3/4:207 THR
Using Dunbrack library
mutadedModel #3/4 VAL 207: phi -82.2, psi -25.3 trans
Applying THR rotamer (chi angles: 60.0) to mutadedModel #3/4 THR 207
> color #3/4:207 yellow
> swapaa #3/4:208 ILE
Using Dunbrack library
mutadedModel #3/4 GLN 208: phi -67.9, psi -39.2 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/4 ILE 208
> color #3/4:208 yellow
> swapaa #3/4:209 ASP
Using Dunbrack library
mutadedModel #3/4 ALA 209: phi -76.2, psi -28.9 trans
Applying ASP rotamer (chi angles: -170.3 60.7) to mutadedModel #3/4 ASP 209
> color #3/4:209 yellow
> swapaa #3/4:210 ASN
Using Dunbrack library
mutadedModel #3/4 LEU 210: phi -78.7, psi -32.1 trans
Applying ASN rotamer (chi angles: -71.8 -0.4) to mutadedModel #3/4 ASN 210
> color #3/4:210 yellow
> swapaa #3/4:215 LEU
Using Dunbrack library
mutadedModel #3/4 GLN 215: phi -69.1, psi -41.1 trans
Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/4 LEU 215
> color #3/4:215 yellow
> swapaa #3/4:218 GLN
Using Dunbrack library
mutadedModel #3/4 PHE 218: phi -94.3, psi -43.2 trans
Applying GLN rotamer (chi angles: -175.1 64.2 73.6) to mutadedModel #3/4 GLN
218
> color #3/4:218 yellow
> swapaa #3/4:219 CYS
Using Dunbrack library
mutadedModel #3/4 GLU 219: phi -109.3, psi 79.1 trans
Applying CYS rotamer (chi angles: 64.4) to mutadedModel #3/4 CYS 219
> color #3/4:219 yellow
> swapaa #3/4:221 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 LYS 221 to ALA
> color #3/4:221 yellow
> swapaa #3/4:222 GLU
Using Dunbrack library
mutadedModel #3/4 ASN 222: phi -58.1, psi -35.0 trans
Applying GLU rotamer (chi angles: -69.3 177.9 -8.3) to mutadedModel #3/4 GLU
222
> color #3/4:222 yellow
> swapaa #3/4:223 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 223: phi -65.1, psi -38.7 trans
Applying TYR rotamer (chi angles: -175.9 75.8) to mutadedModel #3/4 TYR 223
> color #3/4:223 yellow
> swapaa #3/4:225 LYS
Using Dunbrack library
mutadedModel #3/4 THR 225: phi -66.0, psi -45.5 trans
Applying LYS rotamer (chi angles: -70.3 -171.1 -71.7 -174.4) to mutadedModel
#3/4 LYS 225
> color #3/4:225 yellow
> swapaa #3/4:226 GLN
Using Dunbrack library
mutadedModel #3/4 GLU 226: phi -61.9, psi -38.2 trans
Applying GLN rotamer (chi angles: -69.8 176.6 64.1) to mutadedModel #3/4 GLN
226
> color #3/4:226 yellow
> swapaa #3/4:227 MET
Using Dunbrack library
mutadedModel #3/4 GLN 227: phi -79.5, psi -32.4 trans
Applying MET rotamer (chi angles: -67.7 -57.6 -67.1) to mutadedModel #3/4 MET
227
> color #3/4:227 yellow
> swapaa #3/4:229 GLU
Using Dunbrack library
mutadedModel #3/4 MET 229: phi -63.3, psi -36.0 trans
Applying GLU rotamer (chi angles: -69.9 176.8 -8.7) to mutadedModel #3/4 GLU
229
> color #3/4:229 yellow
> swapaa #3/4:230 THR
Using Dunbrack library
mutadedModel #3/4 ILE 230: phi -70.6, psi -44.4 trans
Applying THR rotamer (chi angles: -60.5) to mutadedModel #3/4 THR 230
> color #3/4:230 yellow
> swapaa #3/4:231 VAL
Using Dunbrack library
mutadedModel #3/4 ASN 231: phi -67.3, psi -32.0 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 231
> color #3/4:231 yellow
> swapaa #3/4:234 TYR
Using Dunbrack library
mutadedModel #3/4 TRP 234: phi -55.7, psi -33.7 trans
Applying TYR rotamer (chi angles: -72.4 109.3) to mutadedModel #3/4 TYR 234
> color #3/4:234 yellow
> swapaa #3/4:235 ARG
Using Dunbrack library
mutadedModel #3/4 SER 235: phi -114.9, psi -27.0 trans
Applying ARG rotamer (chi angles: -64.4 -74.5 82.1 -166.6) to mutadedModel
#3/4 ARG 235
> color #3/4:235 yellow
> swapaa #3/4:236 GLU
Using Dunbrack library
mutadedModel #3/4 ASP 236: phi -70.1, psi 173.8 trans
Applying GLU rotamer (chi angles: -64.3 84.9 -6.3) to mutadedModel #3/4 GLU
236
> color #3/4:236 yellow
> swapaa #3/4:241 PRO
Using Dunbrack library
mutadedModel #3/4 ALA 241: phi -71.0, psi 126.1 trans
Applying PRO rotamer (chi angles: 25.0 -32.3) to mutadedModel #3/4 PRO 241
> color #3/4:241 yellow
> swapaa #3/4:243 PHE
Using Dunbrack library
mutadedModel #3/4 THR 243: phi -110.4, psi 158.8 trans
Applying PHE rotamer (chi angles: -65.2 116.3) to mutadedModel #3/4 PHE 243
> color #3/4:243 yellow
> swapaa #3/4:246 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLU 246 to ALA
> color #3/4:246 yellow
> swapaa #3/4:249 ASN
Using Dunbrack library
mutadedModel #3/4 GLU 249: phi -85.4, psi -32.6 trans
Applying ASN rotamer (chi angles: -69.7 -111.8) to mutadedModel #3/4 ASN 249
> color #3/4:249 yellow
> swapaa #3/4:250 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 ALA 250 to GLY
> color #3/4:250 yellow
> swapaa #3/4:252 ILE
Using Dunbrack library
mutadedModel #3/4 ASN 252: phi -83.3, psi 13.3 trans
Applying ILE rotamer (chi angles: -163.5 64.8) to mutadedModel #3/4 ILE 252
> color #3/4:252 yellow
> swapaa #3/4:253 SER
Using Dunbrack library
mutadedModel #3/4 ALA 253: phi -67.2, psi 173.7 trans
Applying SER rotamer (chi angles: -63.5) to mutadedModel #3/4 SER 253
> color #3/4:253 yellow
> swapaa #3/4:254 SER
Using Dunbrack library
mutadedModel #3/4 LYS 254: phi -46.5, psi -123.9 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 254
> color #3/4:254 yellow
> swapaa #3/4:255 SER
Using Dunbrack library
mutadedModel #3/4 GLN 255: phi -32.9, psi -31.7 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 255
> color #3/4:255 yellow
> swapaa #3/4:257 LEU
Using Dunbrack library
mutadedModel #3/4 MET 257: phi -62.3, psi -36.0 trans
Applying LEU rotamer (chi angles: -69.2 172.7) to mutadedModel #3/4 LEU 257
> color #3/4:257 yellow
> swapaa #3/4:259 GLU
Using Dunbrack library
mutadedModel #3/4 ALA 259: phi -64.5, psi -36.3 trans
Applying GLU rotamer (chi angles: -177.3 177.0 27.2) to mutadedModel #3/4 GLU
259
> color #3/4:259 yellow
> swapaa #3/4:260 GLN
Using Dunbrack library
mutadedModel #3/4 ARG 260: phi -66.8, psi -47.3 trans
Applying GLN rotamer (chi angles: -176.1 64.9 103.6) to mutadedModel #3/4 GLN
260
> color #3/4:260 yellow
> swapaa #3/4:261 TYR
Using Dunbrack library
mutadedModel #3/4 TRP 261: phi -50.7, psi -37.8 trans
Applying TYR rotamer (chi angles: 179.2 103.5) to mutadedModel #3/4 TYR 261
> color #3/4:261 yellow
> swapaa #3/4:262 SER
Using Dunbrack library
mutadedModel #3/4 ALA 262: phi -82.3, psi -24.1 trans
Applying SER rotamer (chi angles: 67.5) to mutadedModel #3/4 SER 262
> color #3/4:262 yellow
> swapaa #3/4:263 ARG
Using Dunbrack library
mutadedModel #3/4 SER 263: phi -89.0, psi -33.4 trans
Applying ARG rotamer (chi angles: -175.4 179.3 -64.6 161.9) to mutadedModel
#3/4 ARG 263
> color #3/4:263 yellow
> swapaa #3/4:264 TYR
Using Dunbrack library
mutadedModel #3/4 LYS 264: phi -115.2, psi -18.5 trans
Applying TYR rotamer (chi angles: -61.8 103.3) to mutadedModel #3/4 TYR 264
> color #3/4:264 yellow
> swapaa #3/4:265 VAL
Using Dunbrack library
mutadedModel #3/4 PHE 265: phi -92.0, psi 73.6 trans
Applying VAL rotamer (chi angles: -176.5) to mutadedModel #3/4 VAL 265
> color #3/4:265 yellow
> swapaa #3/4:266 VAL
Using Dunbrack library
mutadedModel #3/4 LEU 266: phi -107.7, psi 168.7 trans
Applying VAL rotamer (chi angles: -60.6) to mutadedModel #3/4 VAL 266
> color #3/4:266 yellow
> swapaa #3/4:268 SER
Using Dunbrack library
mutadedModel #3/4 ASP 268: phi -92.4, psi -14.8 trans
Applying SER rotamer (chi angles: -63.8) to mutadedModel #3/4 SER 268
> color #3/4:268 yellow
> swapaa #3/4:269 ARG
Using Dunbrack library
mutadedModel #3/4 SER 269: phi -12.4, psi -73.3 trans
Applying ARG rotamer (chi angles: 81.1 -69.0 -178.3 -84.6) to mutadedModel
#3/4 ARG 269
> color #3/4:269 yellow
> swapaa #3/4:271 VAL
Using Dunbrack library
mutadedModel #3/4 THR 271: phi -133.4, psi -6.5 trans
Applying VAL rotamer (chi angles: -62.1) to mutadedModel #3/4 VAL 271
> color #3/4:271 yellow
> swapaa #3/4:273 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 273 to ALA
> color #3/4:273 yellow
> swapaa #3/4:276 ASN
Using Dunbrack library
mutadedModel #3/4 ASP 276: phi -172.0, psi -24.7 trans
Applying ASN rotamer (chi angles: -69.2 -57.1) to mutadedModel #3/4 ASN 276
> color #3/4:276 yellow
> swapaa #3/4:277 VAL
Using Dunbrack library
mutadedModel #3/4 PRO 277: phi -82.9, psi 154.0 trans
Applying VAL rotamer (chi angles: -60.1) to mutadedModel #3/4 VAL 277
> color #3/4:277 yellow
> swapaa #3/4:278 ASP
Using Dunbrack library
mutadedModel #3/4 PRO 278: phi -63.6, psi 174.6 trans
Applying ASP rotamer (chi angles: -167.0 -64.1) to mutadedModel #3/4 ASP 278
> color #3/4:278 yellow
> swapaa #3/4:279 HIS
Using Dunbrack library
mutadedModel #3/4 PHE 279: phi -80.0, psi -38.7 trans
Applying HIS rotamer (chi angles: 66.1 -77.2) to mutadedModel #3/4 HIS 279
> color #3/4:279 yellow
> swapaa #3/4:280 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLU 280 to ALA
> color #3/4:280 yellow
> swapaa #3/4:281 GLU
Using Dunbrack library
mutadedModel #3/4 ASP 281: phi -78.7, psi -19.7 trans
Applying GLU rotamer (chi angles: -64.0 82.6 1.3) to mutadedModel #3/4 GLU 281
> color #3/4:281 yellow
> swapaa #3/4:282 LEU
Using Dunbrack library
mutadedModel #3/4 ASN 282: phi -81.2, psi -34.6 trans
Applying LEU rotamer (chi angles: -175.8 59.2) to mutadedModel #3/4 LEU 282
> color #3/4:282 yellow
> swapaa #3/4:283 ILE
Using Dunbrack library
mutadedModel #3/4 GLU 283: phi -63.0, psi -43.6 trans
Applying ILE rotamer (chi angles: -68.1 168.5) to mutadedModel #3/4 ILE 283
> color #3/4:283 yellow
> swapaa #3/4:284 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 PRO 284 to ALA
> color #3/4:284 yellow
> swapaa #3/4:285 GLU
Using Dunbrack library
mutadedModel #3/4 VAL 285: phi -74.7, psi -16.4 trans
Applying GLU rotamer (chi angles: -67.2 -64.8 78.4) to mutadedModel #3/4 GLU
285
> color #3/4:285 yellow
> swapaa #3/4:286 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 286: phi 88.5, psi 123.6 cis
Applying TYR rotamer (chi angles: -65.1 119.0) to mutadedModel #3/4 TYR 286
> color #3/4:286 yellow
> swapaa #3/4:287 GLU
Using Dunbrack library
mutadedModel #3/4 THR 287: phi -87.1, psi -25.6 trans
Applying GLU rotamer (chi angles: -66.1 179.0 -6.7) to mutadedModel #3/4 GLU
287
> color #3/4:287 yellow
> swapaa #3/4:289 THR
Using Dunbrack library
mutadedModel #3/4 ASP 289: phi -74.9, psi 108.3 trans
Applying THR rotamer (chi angles: -177.3) to mutadedModel #3/4 THR 289
> color #3/4:289 yellow
> swapaa #3/4:291 PHE
Using Dunbrack library
mutadedModel #3/4 TRP 291: phi -101.2, psi 80.1 trans
Applying PHE rotamer (chi angles: -64.9 0.7) to mutadedModel #3/4 PHE 291
> color #3/4:291 yellow
> swapaa #3/4:292 PRO
Using Dunbrack library
mutadedModel #3/4 VAL 292: phi -72.4, psi 135.1 trans
Applying PRO rotamer (chi angles: 25.6 -33.6) to mutadedModel #3/4 PRO 292
> color #3/4:292 yellow
> swapaa #3/4:293 HIS
Using Dunbrack library
mutadedModel #3/4 PHE 293: phi -61.9, psi 141.0 trans
Applying HIS rotamer (chi angles: -172.3 -26.8) to mutadedModel #3/4 HIS 293
> color #3/4:293 yellow
> swapaa #3/4:297 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 SER 297 to ALA
> color #3/4:297 yellow
> swapaa #3/4:298 PRO
Using Dunbrack library
mutadedModel #3/4 ALA 298: phi -51.3, psi -45.2 trans
Applying PRO rotamer (chi angles: -30.8 40.1) to mutadedModel #3/4 PRO 298
> color #3/4:298 yellow
> swapaa #3/4:299 HIS
Using Dunbrack library
mutadedModel #3/4 PHE 299: phi -86.3, psi -26.5 trans
Applying HIS rotamer (chi angles: 65.2 76.2) to mutadedModel #3/4 HIS 299
> color #3/4:299 yellow
> swapaa #3/4:300 HIS
Using Dunbrack library
mutadedModel #3/4 PHE 300: phi -76.8, psi -24.4 trans
Applying HIS rotamer (chi angles: -68.2 -44.0) to mutadedModel #3/4 HIS 300
> color #3/4:300 yellow
> swapaa #3/4:301 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 SER 301 to ALA
> color #3/4:301 yellow
> swapaa #3/4:303 GLU
Using Dunbrack library
mutadedModel #3/4 ASN 303: phi -106.7, psi 139.3 trans
Applying GLU rotamer (chi angles: -178.1 178.2 26.5) to mutadedModel #3/4 GLU
303
> color #3/4:303 yellow
> swapaa #3/4:304 GLN
Using Dunbrack library
mutadedModel #3/4 GLY 304: phi -24.6, psi 15.5 trans
Applying GLN rotamer (chi angles: -66.6 81.0 -17.6) to mutadedModel #3/4 GLN
304
> color #3/4:304 yellow
> swapaa #3/4:305 PRO
Using Dunbrack library
mutadedModel #3/4 GLY 305: phi 142.0, psi 19.0 trans
Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/4 PRO 305
> color #3/4:305 yellow
> swapaa #3/4:306 SER
Using Dunbrack library
mutadedModel #3/4 VAL 306: phi 6.3, psi none cis
Applying SER rotamer (chi angles: -63.9) to mutadedModel #3/4 SER 306
> color #3/4:306 yellow
> swapaa #3/4:310 SER
Using Dunbrack library
mutadedModel #3/4 GLY 310: phi -39.1, psi -168.8 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 310
> color #3/4:310 yellow
> swapaa #3/4:311 LYS
Using Dunbrack library
mutadedModel #3/4 VAL 311: phi 39.9, psi 93.0 trans
Applying LYS rotamer (chi angles: -179.0 67.5 68.0 63.6) to mutadedModel #3/4
LYS 311
> color #3/4:311 yellow
> swapaa #3/4:312 ASP
Using Dunbrack library
mutadedModel #3/4 PRO 312: phi -69.9, psi -50.0 trans
Applying ASP rotamer (chi angles: -70.9 -16.3) to mutadedModel #3/4 ASP 312
> color #3/4:312 yellow
> swapaa #3/4:313 GLU
Using Dunbrack library
mutadedModel #3/4 GLY 313: phi -55.3, psi -11.8 trans
Applying GLU rotamer (chi angles: -68.1 179.0 -6.3) to mutadedModel #3/4 GLU
313
> color #3/4:313 yellow
> swapaa #3/4:318 THR
Using Dunbrack library
mutadedModel #3/4 ARG 318: phi -121.7, psi 106.0 trans
Applying THR rotamer (chi angles: 57.7) to mutadedModel #3/4 THR 318
> color #3/4:318 yellow
> swapaa #3/4:321 GLU
Using Dunbrack library
mutadedModel #3/4 LYS 321: phi 175.3, psi 142.2 cis
Applying GLU rotamer (chi angles: -178.6 64.6 88.5) to mutadedModel #3/4 GLU
321
> color #3/4:321 yellow
> swapaa #3/4:322 ARG
Using Dunbrack library
mutadedModel #3/4 LYS 322: phi -143.9, psi 122.1 trans
Applying ARG rotamer (chi angles: -65.2 -70.2 -176.9 -85.5) to mutadedModel
#3/4 ARG 322
> color #3/4:322 yellow
> swapaa #3/4:323 HIS
Using Dunbrack library
mutadedModel #3/4 ILE 323: phi -113.6, psi 124.2 trans
Applying HIS rotamer (chi angles: 64.0 -92.4) to mutadedModel #3/4 HIS 323
> color #3/4:323 yellow
> swapaa #3/4:324 ASP
Using Dunbrack library
mutadedModel #3/4 VAL 324: phi -119.1, psi 87.2 trans
Applying ASP rotamer (chi angles: -177.1 -8.1) to mutadedModel #3/4 ASP 324
> color #3/4:324 yellow
> swapaa #3/4:325 HIS
Using Dunbrack library
mutadedModel #3/4 TYR 325: phi -54.1, psi 125.7 trans
Applying HIS rotamer (chi angles: -173.8 73.6) to mutadedModel #3/4 HIS 325
> color #3/4:325 yellow
> swapaa #3/4:326 GLU
Using Dunbrack library
mutadedModel #3/4 LYS 326: phi -144.1, psi 124.1 trans
Applying GLU rotamer (chi angles: -177.8 177.2 -1.7) to mutadedModel #3/4 GLU
326
> color #3/4:326 yellow
> swapaa #3/4:329 PRO
Using Dunbrack library
mutadedModel #3/4 SER 329: phi -78.8, psi -27.7 trans
Applying PRO rotamer (chi angles: -24.1 35.5) to mutadedModel #3/4 PRO 329
> color #3/4:329 yellow
> swapaa #3/4:330 LYS
Using Dunbrack library
mutadedModel #3/4 SER 330: phi -79.4, psi -24.7 trans
Applying LYS rotamer (chi angles: -68.6 -177.5 175.0 65.8) to mutadedModel
#3/4 LYS 330
> color #3/4:330 yellow
> swapaa #3/4:332 MET
Using Dunbrack library
mutadedModel #3/4 ARG 332: phi -76.6, psi -71.9 trans
Applying MET rotamer (chi angles: -70.2 -172.0 -74.2) to mutadedModel #3/4 MET
332
> color #3/4:332 yellow
> swapaa #3/4:334 THR
Using Dunbrack library
mutadedModel #3/4 ASN 334: phi -84.8, psi -2.9 trans
Applying THR rotamer (chi angles: -168.1) to mutadedModel #3/4 THR 334
> color #3/4:334 yellow
> swapaa #3/4:338 MET
Using Dunbrack library
mutadedModel #3/4 ARG 338: phi -68.2, psi 107.8 trans
Applying MET rotamer (chi angles: -66.2 178.9 71.5) to mutadedModel #3/4 MET
338
> color #3/4:338 yellow
> swapaa #3/4:339 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 339: phi -106.7, psi 136.0 trans
Applying ASP rotamer (chi angles: 63.3 17.2) to mutadedModel #3/4 ASP 339
> color #3/4:339 yellow
> swapaa #3/4:341 GLU
Using Dunbrack library
mutadedModel #3/4 LYS 341: phi -122.0, psi 153.8 trans
Applying GLU rotamer (chi angles: -62.2 -70.1 -20.3) to mutadedModel #3/4 GLU
341
> color #3/4:341 yellow
> swapaa #3/4:342 SER
Using Dunbrack library
mutadedModel #3/4 VAL 342: phi -139.7, psi 135.0 trans
Applying SER rotamer (chi angles: 178.0) to mutadedModel #3/4 SER 342
> color #3/4:342 yellow
> swapaa #3/4:344 ILE
Using Dunbrack library
mutadedModel #3/4 CYS 344: phi -123.1, psi 142.6 trans
Applying ILE rotamer (chi angles: -61.6 169.8) to mutadedModel #3/4 ILE 344
> color #3/4:344 yellow
> swapaa #3/4:346 VAL
Using Dunbrack library
mutadedModel #3/4 ILE 346: phi -133.0, psi 121.3 trans
Applying VAL rotamer (chi angles: 179.0) to mutadedModel #3/4 VAL 346
> color #3/4:346 yellow
> swapaa #3/4:348 TRP
Using Dunbrack library
mutadedModel #3/4 ASN 348: phi -127.6, psi -179.4 trans
Applying TRP rotamer (chi angles: 61.6 92.9) to mutadedModel #3/4 TRP 348
> color #3/4:348 yellow
> swapaa #3/4:349 LEU
Using Dunbrack library
mutadedModel #3/4 GLU 349: phi -92.3, psi 131.1 trans
Applying LEU rotamer (chi angles: 178.8 65.6) to mutadedModel #3/4 LEU 349
> color #3/4:349 yellow
> swapaa #3/4:350 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 350 to ALA
> color #3/4:350 yellow
> swapaa #3/4:351 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 351: phi -62.9, psi 147.9 trans
Applying TYR rotamer (chi angles: -71.0 101.9) to mutadedModel #3/4 TYR 351
> color #3/4:351 yellow
> swapaa #3/4:352 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 SER 352 to GLY
> color #3/4:352 yellow
> swapaa #3/4:353 LYS
Using Dunbrack library
mutadedModel #3/4 ARG 353: phi 55.6, psi -112.5 trans
Applying LYS rotamer (chi angles: -178.2 90.8 -76.1 -174.6) to mutadedModel
#3/4 LYS 353
> color #3/4:353 yellow
> swapaa #3/4:354 ASP
Using Dunbrack library
mutadedModel #3/4 LYS 354: phi -155.9, psi -32.5 cis
Applying ASP rotamer (chi angles: -171.5 27.2) to mutadedModel #3/4 ASP 354
> color #3/4:354 yellow
> swapaa #3/4:355 LYS
Using Dunbrack library
mutadedModel #3/4 GLY 355: phi -49.5, psi 45.0 trans
Applying LYS rotamer (chi angles: -67.2 -178.5 -177.7 -64.7) to mutadedModel
#3/4 LYS 355
> color #3/4:355 yellow
> swapaa #3/4:356 LYS
Using Dunbrack library
mutadedModel #3/4 VAL 356: phi -17.1, psi -9.4 trans
Applying LYS rotamer (chi angles: -68.8 -178.9 -177.7 -64.9) to mutadedModel
#3/4 LYS 356
> color #3/4:356 yellow
> swapaa #3/4:357 MET
Using Dunbrack library
mutadedModel #3/4 ASN 357: phi -37.3, psi 75.4 trans
Applying MET rotamer (chi angles: -134.1 -54.5 108.8) to mutadedModel #3/4 MET
357
> color #3/4:357 yellow
> swapaa #3/4:360 ASP
Using Dunbrack library
mutadedModel #3/4 ALA 360: phi -66.8, psi -34.9 trans
Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/4 ASP 360
> color #3/4:360 yellow
> swapaa #3/4:361 HIS
Using Dunbrack library
mutadedModel #3/4 TYR 361: phi -74.0, psi -30.1 trans
Applying HIS rotamer (chi angles: -173.7 -173.6) to mutadedModel #3/4 HIS 361
> color #3/4:361 yellow
> swapaa #3/4:363 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 THR 363 to ALA
> color #3/4:363 yellow
> swapaa #3/4:367 VAL
Using Dunbrack library
mutadedModel #3/4 ILE 367: phi -54.8, psi -44.8 trans
Applying VAL rotamer (chi angles: 171.0) to mutadedModel #3/4 VAL 367
> color #3/4:367 yellow
> swapaa #3/4:368 LYS
Using Dunbrack library
mutadedModel #3/4 ARG 368: phi -50.9, psi -45.5 trans
Applying LYS rotamer (chi angles: -172.0 -90.8 -172.8 -177.4) to mutadedModel
#3/4 LYS 368
> color #3/4:368 yellow
> swapaa #3/4:371 MET
Using Dunbrack library
mutadedModel #3/4 GLN 371: phi -59.3, psi -42.5 trans
Applying MET rotamer (chi angles: -69.1 174.7 69.8) to mutadedModel #3/4 MET
371
> color #3/4:371 yellow
> swapaa #3/4:372 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 372: phi -64.9, psi -36.8 trans
Applying ASP rotamer (chi angles: -71.8 42.4) to mutadedModel #3/4 ASP 372
> color #3/4:372 yellow
> swapaa #3/4:373 ILE
Using Dunbrack library
mutadedModel #3/4 LEU 373: phi -67.4, psi -44.1 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/4 ILE 373
> color #3/4:373 yellow
> swapaa #3/4:374 GLN
Using Dunbrack library
mutadedModel #3/4 SER 374: phi -73.0, psi -34.2 trans
Applying GLN rotamer (chi angles: -173.9 63.3 103.8) to mutadedModel #3/4 GLN
374
> color #3/4:374 yellow
> swapaa #3/4:375 PHE
Using Dunbrack library
mutadedModel #3/4 LYS 375: phi -74.4, psi -41.1 trans
Applying PHE rotamer (chi angles: -73.3 -17.3) to mutadedModel #3/4 PHE 375
> color #3/4:375 yellow
> swapaa #3/4:376 SER
Using Dunbrack library
mutadedModel #3/4 GLN 376: phi -61.4, psi -30.9 trans
Applying SER rotamer (chi angles: 66.4) to mutadedModel #3/4 SER 376
> color #3/4:376 yellow
> swapaa #3/4:377 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 GLU 377 to GLY
> color #3/4:377 yellow
> swapaa #3/4:378 CYS
Using Dunbrack library
mutadedModel #3/4 ALA 378: phi -115.8, psi 29.3 trans
Applying CYS rotamer (chi angles: -63.2) to mutadedModel #3/4 CYS 378
> color #3/4:378 yellow
> swapaa #3/4:379 VAL
Using Dunbrack library
mutadedModel #3/4 GLY 379: phi 175.2, psi 28.0 trans
Applying VAL rotamer (chi angles: 64.6) to mutadedModel #3/4 VAL 379
> color #3/4:379 yellow
> swapaa #3/4:380 ARG
Using Dunbrack library
mutadedModel #3/4 GLY 380: phi 62.8, psi 41.9 trans
Applying ARG rotamer (chi angles: -87.2 79.2 -84.3 -75.1) to mutadedModel #3/4
ARG 380
> color #3/4:380 yellow
> swapaa #3/4:381 TYR
Using Dunbrack library
mutadedModel #3/4 VAL 381: phi 32.2, psi 112.9 cis
Applying TYR rotamer (chi angles: 63.9 89.9) to mutadedModel #3/4 TYR 381
> color #3/4:381 yellow
> swapaa #3/4:382 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 ARG 382 to ALA
> color #3/4:382 yellow
> swapaa #3/4:383 HIS
Using Dunbrack library
mutadedModel #3/4 ALA 383: phi 2.1, psi -31.7 trans
Applying HIS rotamer (chi angles: 64.2 -78.4) to mutadedModel #3/4 HIS 383
> color #3/4:383 yellow
> swapaa #3/4:387 TYR
Using Dunbrack library
mutadedModel #3/4 PRO 387: phi none, psi 36.5 trans
Applying TYR rotamer (chi angles: 63.6 90.2) to mutadedModel #3/4 TYR 387
> color #3/4:387 yellow
> swapaa #3/4:388 GLU
Using Dunbrack library
mutadedModel #3/4 LEU 388: phi -29.1, psi 89.8 trans
Applying GLU rotamer (chi angles: 66.6 -84.2 -9.9) to mutadedModel #3/4 GLU
388
> color #3/4:388 yellow
> swapaa #3/4:389 HIS
Using Dunbrack library
mutadedModel #3/4 GLY 389: phi -36.3, psi -92.2 trans
Applying HIS rotamer (chi angles: -177.1 -81.1) to mutadedModel #3/4 HIS 389
> color #3/4:389 yellow
> swapaa #3/4:390 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 390 to ALA
> color #3/4:390 yellow
> swapaa #3/4:391 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 THR 391 to GLY
> color #3/4:391 yellow
> swapaa #3/4:392 LEU
Using Dunbrack library
mutadedModel #3/4 VAL 392: phi -85.1, psi 131.9 trans
Applying LEU rotamer (chi angles: 61.9 81.8) to mutadedModel #3/4 LEU 392
> color #3/4:392 yellow
> swapaa #3/4:393 ARG
Using Dunbrack library
mutadedModel #3/4 LYS 393: phi -118.0, psi 170.3 trans
Applying ARG rotamer (chi angles: -74.4 84.8 69.7 -167.8) to mutadedModel #3/4
ARG 393
> color #3/4:393 yellow
> swapaa #3/4:394 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 VAL 394 to ALA
> color #3/4:394 yellow
> swapaa #3/4:396 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 396: phi -105.6, psi -34.0 trans
Applying TYR rotamer (chi angles: -177.5 51.5) to mutadedModel #3/4 TYR 396
> color #3/4:396 yellow
> swapaa #3/4:397 SER
Using Dunbrack library
mutadedModel #3/4 GLU 397: phi -29.5, psi 100.9 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 397
> color #3/4:397 yellow
> swapaa #3/4:399 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 399: phi -116.7, psi -102.8 trans
Applying TYR rotamer (chi angles: -67.2 124.2) to mutadedModel #3/4 TYR 399
> color #3/4:399 yellow
> swapaa #3/4:400 GLN
Using Dunbrack library
mutadedModel #3/4 GLU 400: phi -99.7, psi 52.1 trans
Applying GLN rotamer (chi angles: -61.3 -64.4 -52.3) to mutadedModel #3/4 GLN
400
> color #3/4:400 yellow
> swapaa #3/4:401 THR
Using Dunbrack library
mutadedModel #3/4 ASP 401: phi 132.2, psi 15.2 trans
Applying THR rotamer (chi angles: -60.4) to mutadedModel #3/4 THR 401
> color #3/4:401 yellow
> swapaa #3/4:405 MET
Using Dunbrack library
mutadedModel #3/4 ILE 405: phi -137.7, psi none trans
Applying MET rotamer (chi angles: -174.6 179.7 -71.6) to mutadedModel #3/4 MET
405
> color #3/4:405 yellow
> swapaa #3/4:407 PHE
Using Dunbrack library
mutadedModel #3/4 TYR 407: phi none, psi 138.5 trans
Applying PHE rotamer (chi angles: 63.0 90.4) to mutadedModel #3/4 PHE 407
> color #3/4:407 yellow
> swapaa #3/4:408 THR
Using Dunbrack library
mutadedModel #3/4 VAL 408: phi -114.3, psi 137.0 trans
Applying THR rotamer (chi angles: -178.1) to mutadedModel #3/4 THR 408
> color #3/4:408 yellow
> swapaa #3/4:409 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 VAL 409 to ALA
> color #3/4:409 yellow
> swapaa #3/4:410 LYS
Using Dunbrack library
mutadedModel #3/4 THR 410: phi -127.8, psi 114.6 trans
Applying LYS rotamer (chi angles: -176.8 177.2 -176.1 -66.0) to mutadedModel
#3/4 LYS 410
> color #3/4:410 yellow
> swapaa #3/4:411 THR
Using Dunbrack library
mutadedModel #3/4 ARG 411: phi -142.3, psi 179.8 trans
Applying THR rotamer (chi angles: -168.8) to mutadedModel #3/4 THR 411
> color #3/4:411 yellow
> swapaa #3/4:412 GLU
Using Dunbrack library
mutadedModel #3/4 SER 412: phi -83.1, psi 158.0 trans
Applying GLU rotamer (chi angles: -63.6 83.9 -9.7) to mutadedModel #3/4 GLU
412
> color #3/4:412 yellow
> swapaa #3/4:414 GLN
Using Dunbrack library
mutadedModel #3/4 ALA 414: phi -74.3, psi -28.6 trans
Applying GLN rotamer (chi angles: -173.9 63.3 74.0) to mutadedModel #3/4 GLN
414
> color #3/4:414 yellow
> swapaa #3/4:417 VAL
Using Dunbrack library
mutadedModel #3/4 ALA 417: phi -73.6, psi -34.3 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 417
> color #3/4:417 yellow
> swapaa #3/4:418 ARG
Using Dunbrack library
mutadedModel #3/4 LYS 418: phi -66.0, psi -39.6 trans
Applying ARG rotamer (chi angles: -70.6 -177.7 -69.3 168.0) to mutadedModel
#3/4 ARG 418
> color #3/4:418 yellow
> swapaa #3/4:419 MET
Using Dunbrack library
mutadedModel #3/4 ARG 419: phi -76.8, psi -31.0 trans
Applying MET rotamer (chi angles: -67.7 -57.6 -67.1) to mutadedModel #3/4 MET
419
> color #3/4:419 yellow
> swapaa #3/4:420 VAL
Using Dunbrack library
mutadedModel #3/4 LEU 420: phi -75.9, psi -30.1 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/4 VAL 420
> color #3/4:420 yellow
> swapaa #3/4:421 THR
Using Dunbrack library
mutadedModel #3/4 GLU 421: phi -92.0, psi -34.2 trans
Applying THR rotamer (chi angles: -59.9) to mutadedModel #3/4 THR 421
> color #3/4:421 yellow
> swapaa #3/4:422 ASP
Using Dunbrack library
mutadedModel #3/4 THR 422: phi -78.9, psi -6.4 trans
Applying ASP rotamer (chi angles: 62.7 25.2) to mutadedModel #3/4 ASP 422
> color #3/4:422 yellow
> swapaa #3/4:423 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 VAL 423 to ALA
> color #3/4:423 yellow
> swapaa #3/4:424 VAL
Using Dunbrack library
mutadedModel #3/4 GLY 424: phi -63.3, psi -30.8 trans
Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/4 VAL 424
> color #3/4:424 yellow
> swapaa #3/4:426 MET
Using Dunbrack library
mutadedModel #3/4 ASP 426: phi -60.1, psi 12.9 trans
Applying MET rotamer (chi angles: -67.9 176.8 70.6) to mutadedModel #3/4 MET
426
> color #3/4:426 yellow
> swapaa #3/4:427 VAL
Using Dunbrack library
mutadedModel #3/4 MET 427: phi 32.6, psi -49.0 trans
Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/4 VAL 427
> color #3/4:427 yellow
> swapaa #3/4:428 GLN
Using Dunbrack library
mutadedModel #3/4 PHE 428: phi -49.2, psi -41.8 trans
Applying GLN rotamer (chi angles: 67.6 -176.4 -42.5) to mutadedModel #3/4 GLN
428
> color #3/4:428 yellow
> swapaa #3/4:429 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 GLY 429 to ALA
> color #3/4:429 yellow
> swapaa #3/4:430 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 GLU 430 to GLY
> color #3/4:430 yellow
> swapaa #3/4:431 LYS
Using Dunbrack library
mutadedModel #3/4 ALA 431: phi -98.1, psi 147.9 trans
Applying LYS rotamer (chi angles: 66.8 -176.8 -70.4 -67.0) to mutadedModel
#3/4 LYS 431
> color #3/4:431 yellow
> swapaa #3/4:432 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 LEU 432 to ALA
> color #3/4:432 yellow
> swapaa #3/4:435 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 SER 435 to ALA
> color #3/4:435 yellow
> swapaa #3/4:436 ASP
Using Dunbrack library
mutadedModel #3/4 ALA 436: phi -45.6, psi -35.9 trans
Applying ASP rotamer (chi angles: -71.6 -14.7) to mutadedModel #3/4 ASP 436
> color #3/4:436 yellow
> swapaa #3/4:438 THR
Using Dunbrack library
mutadedModel #3/4 GLU 438: phi -55.1, psi -42.4 trans
Applying THR rotamer (chi angles: 58.7) to mutadedModel #3/4 THR 438
> color #3/4:438 yellow
> swapaa #3/4:440 SER
Using Dunbrack library
mutadedModel #3/4 LEU 440: phi -67.5, psi -36.4 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/4 SER 440
> color #3/4:440 yellow
> swapaa #3/4:441 VAL
Using Dunbrack library
mutadedModel #3/4 ILE 441: phi -63.2, psi -40.6 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/4 VAL 441
> color #3/4:441 yellow
> swapaa #3/4:443 LYS
Using Dunbrack library
mutadedModel #3/4 ALA 443: phi -58.8, psi -42.1 trans
Applying LYS rotamer (chi angles: -70.5 179.2 -179.5 178.4) to mutadedModel
#3/4 LYS 443
> color #3/4:443 yellow
> swapaa #3/4:444 LYS
Using Dunbrack library
mutadedModel #3/4 PHE 444: phi -73.1, psi -24.1 trans
Applying LYS rotamer (chi angles: -69.0 174.6 69.9 176.2) to mutadedModel #3/4
LYS 444
> color #3/4:444 yellow
> swapaa #3/4:445 MET
Using Dunbrack library
mutadedModel #3/4 GLN 445: phi -73.3, psi -45.2 trans
Applying MET rotamer (chi angles: -68.9 174.2 70.0) to mutadedModel #3/4 MET
445
> color #3/4:445 yellow
> swapaa #3/4:447 LYS
Using Dunbrack library
mutadedModel #3/4 ARG 447: phi -56.2, psi -54.3 trans
Applying LYS rotamer (chi angles: -179.0 63.7 68.3 63.6) to mutadedModel #3/4
LYS 447
> color #3/4:447 yellow
> swapaa #3/4:448 MET
Using Dunbrack library
mutadedModel #3/4 LEU 448: phi -56.0, psi -65.5 trans
Applying MET rotamer (chi angles: -179.3 -83.0 -71.1) to mutadedModel #3/4 MET
448
> color #3/4:448 yellow
> swapaa #3/4:449 GLN
Using Dunbrack library
mutadedModel #3/4 PHE 449: phi -38.3, psi -43.2 trans
Applying GLN rotamer (chi angles: -70.0 176.9 64.0) to mutadedModel #3/4 GLN
449
> color #3/4:449 yellow
> swapaa #3/4:451 MET
Using Dunbrack library
mutadedModel #3/4 PHE 451: phi -85.9, psi -38.6 trans
Applying MET rotamer (chi angles: -67.0 -59.2 -68.4) to mutadedModel #3/4 MET
451
> color #3/4:451 yellow
> swapaa #3/4:452 VAL
Using Dunbrack library
mutadedModel #3/4 THR 452: phi -63.9, psi -35.5 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/4 VAL 452
> color #3/4:452 yellow
> swapaa #3/4:453 GLN
Using Dunbrack library
mutadedModel #3/4 LYS 453: phi -91.5, psi -22.7 trans
Applying GLN rotamer (chi angles: -65.8 178.7 66.3) to mutadedModel #3/4 GLN
453
> color #3/4:453 yellow
> swapaa #3/4:454 ASN
Using Dunbrack library
mutadedModel #3/4 LYS 454: phi -110.0, psi -31.6 trans
Applying ASN rotamer (chi angles: -65.8 -94.4) to mutadedModel #3/4 ASN 454
> color #3/4:454 yellow
> swapaa #3/4:455 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 SER 455 to ALA
> color #3/4:455 yellow
> swapaa #3/4:456 ASP
Using Dunbrack library
mutadedModel #3/4 ILE 456: phi -110.5, psi -56.2 trans
Applying ASP rotamer (chi angles: -173.7 61.7) to mutadedModel #3/4 ASP 456
> color #3/4:456 yellow
> swapaa #3/4:457 THR
Using Dunbrack library
mutadedModel #3/4 LEU 457: phi -84.6, psi 146.5 trans
Applying THR rotamer (chi angles: 61.0) to mutadedModel #3/4 THR 457
> color #3/4:457 yellow
> swapaa #3/4:460 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 460: phi -85.2, psi -22.9 trans
Applying ASP rotamer (chi angles: -65.3 -58.8) to mutadedModel #3/4 ASP 460
> color #3/4:460 yellow
> swapaa #3/4:461 TYR
Using Dunbrack library
mutadedModel #3/4 TRP 461: phi -74.6, psi -30.1 trans
Applying TYR rotamer (chi angles: -171.9 75.2) to mutadedModel #3/4 TYR 461
> color #3/4:461 yellow
> swapaa #3/4:462 CYS
Using Dunbrack library
mutadedModel #3/4 GLU 462: phi -69.4, psi -29.2 trans
Applying CYS rotamer (chi angles: 66.5) to mutadedModel #3/4 CYS 462
> color #3/4:462 yellow
> swapaa #3/4:465 LEU
Using Dunbrack library
mutadedModel #3/4 ILE 465: phi -78.9, psi -29.7 trans
Applying LEU rotamer (chi angles: -65.9 175.1) to mutadedModel #3/4 LEU 465
> color #3/4:465 yellow
> swapaa #3/4:467 THR
Using Dunbrack library
mutadedModel #3/4 ARG 467: phi -98.0, psi -21.4 trans
Applying THR rotamer (chi angles: 61.7) to mutadedModel #3/4 THR 467
> color #3/4:467 yellow
> swapaa #3/4:468 CYS
Using Dunbrack library
mutadedModel #3/4 SER 468: phi -119.3, psi 23.4 trans
Applying CYS rotamer (chi angles: -63.5) to mutadedModel #3/4 CYS 468
> color #3/4:468 yellow
> swapaa #3/4:470 SER
Using Dunbrack library
mutadedModel #3/4 GLY 470: phi 28.1, psi -10.8 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 470
> color #3/4:470 yellow
> swapaa #3/4:471 THR
Using Dunbrack library
mutadedModel #3/4 GLY 471: phi -172.0, psi 34.8 trans
Applying THR rotamer (chi angles: 61.3) to mutadedModel #3/4 THR 471
> color #3/4:471 yellow
> swapaa #3/4:472 ASP
Using Dunbrack library
mutadedModel #3/4 LYS 472: phi 9.6, psi -172.9 trans
Applying ASP rotamer (chi angles: -69.4 -17.4) to mutadedModel #3/4 ASP 472
> color #3/4:472 yellow
> swapaa #3/4:473 SER
Using Dunbrack library
mutadedModel #3/4 LYS 473: phi 0.8, psi 38.6 cis
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 473
> color #3/4:473 yellow
> swapaa #3/4:474 ASP
Using Dunbrack library
mutadedModel #3/4 SER 474: phi -9.6, psi -9.9 trans
Applying ASP rotamer (chi angles: -69.4 40.5) to mutadedModel #3/4 ASP 474
> color #3/4:474 yellow
> swapaa #3/4:475 SER
Using Dunbrack library
mutadedModel #3/4 GLY 475: phi -39.4, psi 70.9 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 475
> color #3/4:475 yellow
> swapaa #3/4:477 LEU
Using Dunbrack library
mutadedModel #3/4 THR 477: phi -45.0, psi 112.1 trans
Applying LEU rotamer (chi angles: -63.1 175.5) to mutadedModel #3/4 LEU 477
> color #3/4:477 yellow
> swapaa #3/4:479 THR
Using Dunbrack library
mutadedModel #3/4 ILE 479: phi -72.9, psi 125.9 trans
Applying THR rotamer (chi angles: 58.0) to mutadedModel #3/4 THR 479
> color #3/4:479 yellow
> swapaa #3/4:480 SER
Using Dunbrack library
mutadedModel #3/4 THR 480: phi -113.0, psi -176.9 trans
Applying SER rotamer (chi angles: -177.4) to mutadedModel #3/4 SER 480
> color #3/4:480 yellow
> swapaa #3/4:481 LEU
Using Dunbrack library
mutadedModel #3/4 GLU 481: phi -82.8, psi -39.8 trans
Applying LEU rotamer (chi angles: -174.4 -78.5) to mutadedModel #3/4 LEU 481
> color #3/4:481 yellow
> swapaa #3/4:482 GLU
Using Dunbrack library
mutadedModel #3/4 ALA 482: phi -62.9, psi -46.4 trans
Applying GLU rotamer (chi angles: -67.4 80.8 1.3) to mutadedModel #3/4 GLU 482
> color #3/4:482 yellow
> swapaa #3/4:484 VAL
Using Dunbrack library
mutadedModel #3/4 LEU 484: phi -69.9, psi -33.6 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/4 VAL 484
> color #3/4:484 yellow
> swapaa #3/4:485 VAL
Using Dunbrack library
mutadedModel #3/4 SER 485: phi -74.3, psi -37.9 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/4 VAL 485
> color #3/4:485 yellow
> swapaa #3/4:486 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 486: phi -66.5, psi -38.4 trans
Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/4 ASP 486
> color #3/4:486 yellow
> swapaa #3/4:488 ILE
Using Dunbrack library
mutadedModel #3/4 LEU 488: phi -63.9, psi -28.6 trans
Applying ILE rotamer (chi angles: -67.8 168.9) to mutadedModel #3/4 ILE 488
> color #3/4:488 yellow
> swapaa #3/4:489 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 489: phi -85.3, psi -24.6 trans
Applying ASP rotamer (chi angles: -65.3 -30.9) to mutadedModel #3/4 ASP 489
> color #3/4:489 yellow
> swapaa #3/4:490 SER
Using Dunbrack library
mutadedModel #3/4 ALA 490: phi -96.3, psi 24.4 trans
Applying SER rotamer (chi angles: 61.3) to mutadedModel #3/4 SER 490
> color #3/4:490 yellow
> swapaa #3/4:491 VAL
Using Dunbrack library
mutadedModel #3/4 ALA 491: phi -105.8, psi 134.6 trans
Applying VAL rotamer (chi angles: 177.8) to mutadedModel #3/4 VAL 491
> color #3/4:491 yellow
> swapaa #3/4:495 ASP
Using Dunbrack library
mutadedModel #3/4 GLU 495: phi -71.9, psi -33.3 trans
Applying ASP rotamer (chi angles: -71.2 -42.3) to mutadedModel #3/4 ASP 495
> color #3/4:495 yellow
> swapaa #3/4:497 LYS
Using Dunbrack library
mutadedModel #3/4 SER 497: phi -64.6, psi -36.5 trans
Applying LYS rotamer (chi angles: 179.8 -96.2 -71.1 178.0) to mutadedModel
#3/4 LYS 497
> color #3/4:497 yellow
> swapaa #3/4:500 TYR
Using Dunbrack library
mutadedModel #3/4 PHE 500: phi -76.9, psi -29.9 trans
Applying TYR rotamer (chi angles: -70.3 105.9) to mutadedModel #3/4 TYR 500
> color #3/4:500 yellow
> swapaa #3/4:502 LYS
Using Dunbrack library
mutadedModel #3/4 PHE 502: phi -74.7, psi -44.8 trans
Applying LYS rotamer (chi angles: -66.3 -69.8 178.1 64.4) to mutadedModel #3/4
LYS 502
> color #3/4:502 yellow
> swapaa #3/4:503 MET
Using Dunbrack library
mutadedModel #3/4 GLY 503: phi -73.8, psi -49.6 trans
Applying MET rotamer (chi angles: -78.6 65.1 -104.2) to mutadedModel #3/4 MET
503
> color #3/4:503 yellow
> swapaa #3/4:504 PHE
Using Dunbrack library
mutadedModel #3/4 LEU 504: phi -70.7, psi -10.3 trans
Applying PHE rotamer (chi angles: -71.4 11.4) to mutadedModel #3/4 PHE 504
> color #3/4:504 yellow
> swapaa #3/4:505 SER
Using Dunbrack library
mutadedModel #3/4 GLY 505: phi -43.7, psi -28.3 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/4 SER 505
> color #3/4:505 yellow
> swapaa #3/4:506 ASN
Using Dunbrack library
mutadedModel #3/4 VAL 506: phi -97.0, psi -21.7 trans
Applying ASN rotamer (chi angles: 64.3 81.0) to mutadedModel #3/4 ASN 506
> color #3/4:506 yellow
> swapaa #3/4:507 LYS
Using Dunbrack library
mutadedModel #3/4 THR 507: phi 60.9, psi 88.8 trans
Applying LYS rotamer (chi angles: -178.7 67.8 176.2 178.5) to mutadedModel
#3/4 LYS 507
> color #3/4:507 yellow
> swapaa #3/4:508 ALA
Using Dunbrack library
Swapping mutadedModel #3/4 THR 508 to ALA
> color #3/4:508 yellow
> swapaa #3/4:509 SER
Using Dunbrack library
mutadedModel #3/4 ALA 509: phi -80.9, psi 140.5 trans
Applying SER rotamer (chi angles: 175.7) to mutadedModel #3/4 SER 509
> color #3/4:509 yellow
> swapaa #3/4:510 LEU
Using Dunbrack library
mutadedModel #3/4 VAL 510: phi -109.5, psi 64.7 trans
Applying LEU rotamer (chi angles: -79.3 -61.5) to mutadedModel #3/4 LEU 510
> color #3/4:510 yellow
> swapaa #3/4:512 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 MET 512 to GLY
> color #3/4:512 yellow
> swapaa #3/4:513 HIS
Using Dunbrack library
mutadedModel #3/4 THR 513: phi -124.8, psi 168.7 trans
Applying HIS rotamer (chi angles: -175.1 -141.6) to mutadedModel #3/4 HIS 513
> color #3/4:513 yellow
> swapaa #3/4:515 GLU
Using Dunbrack library
mutadedModel #3/4 VAL 515: phi -61.0, psi 33.9 trans
Applying GLU rotamer (chi angles: -177.7 65.6 21.3) to mutadedModel #3/4 GLU
515
> color #3/4:515 yellow
> swapaa #3/4:516 MET
Using Dunbrack library
mutadedModel #3/4 ASP 516: phi -89.8, psi 84.6 trans
Applying MET rotamer (chi angles: -176.7 179.9 -70.7) to mutadedModel #3/4 MET
516
> color #3/4:516 yellow
> swapaa #3/4:517 LEU
Using Dunbrack library
mutadedModel #3/4 PHE 517: phi -92.6, psi 34.9 trans
Applying LEU rotamer (chi angles: -62.1 176.6) to mutadedModel #3/4 LEU 517
> color #3/4:517 yellow
> swapaa #3/4:518 CYS
Using Dunbrack library
mutadedModel #3/4 SER 518: phi -176.9, psi 162.1 trans
Applying CYS rotamer (chi angles: -62.2) to mutadedModel #3/4 CYS 518
> color #3/4:518 yellow
> swapaa #3/4:519 PHE
Using Dunbrack library
mutadedModel #3/4 SER 519: phi 169.4, psi 106.2 cis
Applying PHE rotamer (chi angles: -67.0 70.3) to mutadedModel #3/4 PHE 519
> color #3/4:519 yellow
> swapaa #3/4:520 PRO
Using Dunbrack library
mutadedModel #3/4 ALA 520: phi 5.7, psi 99.9 trans
Applying PRO rotamer (chi angles: -25.1 36.3) to mutadedModel #3/4 PRO 520
> color #3/4:520 yellow
> swapaa #3/4:521 SER
Using Dunbrack library
mutadedModel #3/4 VAL 521: phi -83.4, psi 41.6 trans
Applying SER rotamer (chi angles: -64.2) to mutadedModel #3/4 SER 521
> color #3/4:521 yellow
> swapaa #3/4:522 LEU
Using Dunbrack library
mutadedModel #3/4 SER 522: phi -117.5, psi none trans
Applying LEU rotamer (chi angles: -179.2 63.0) to mutadedModel #3/4 LEU 522
> color #3/4:522 yellow
> swapaa #3/4:524 GLN
Using Dunbrack library
mutadedModel #3/4 GLY 524: phi none, psi -63.1 trans
Applying GLN rotamer (chi angles: -165.2 -77.7 -112.0) to mutadedModel #3/4
GLN 524
> color #3/4:524 yellow
> swapaa #3/4:525 MET
Using Dunbrack library
mutadedModel #3/4 SER 525: phi -122.8, psi -58.7 trans
Applying MET rotamer (chi angles: -67.7 176.0 70.1) to mutadedModel #3/4 MET
525
> color #3/4:525 yellow
> swapaa #3/4:526 GLY
Using Dunbrack library
Swapping mutadedModel #3/4 LYS 526 to GLY
> color #3/4:526 yellow
> select #3/FI
3134 atoms, 3227 bonds, 371 residues, 1 model selected
> bond #3/FI:211@C #3/FI:212@N reasonable false
Created 0 bonds
> bond #3/FI:212@C #3/FI:213@N reasonable false
Created 0 bonds
> bond #3/FI:213@C #3/FI:214@N reasonable false
Created 0 bonds
> bond #3/FI:214@C #3/FI:215@N reasonable false
Created 0 bonds
> bond #3/FI:215@C #3/FI:216@N reasonable false
Created 0 bonds
> bond #3/FI:216@C #3/FI:217@N reasonable false
Created 0 bonds
> bond #3/FI:217@C #3/FI:218@N reasonable false
Created 0 bonds
> bond #3/FI:218@C #3/FI:219@N reasonable false
Created 0 bonds
> bond #3/FI:219@C #3/FI:220@N reasonable false
Created 0 bonds
> bond #3/FI:220@C #3/FI:221@N reasonable false
Created 0 bonds
> bond #3/FI:221@C #3/FI:222@N reasonable false
Created 0 bonds
> bond #3/FI:222@C #3/FI:223@N reasonable false
Created 0 bonds
> bond #3/FI:223@C #3/FI:224@N reasonable false
Created 0 bonds
> bond #3/FI:224@C #3/FI:225@N reasonable false
Created 0 bonds
> bond #3/FI:225@C #3/FI:226@N reasonable false
Created 0 bonds
> bond #3/FI:226@C #3/FI:227@N reasonable false
Created 0 bonds
> bond #3/FI:227@C #3/FI:228@N reasonable false
Created 0 bonds
> bond #3/FI:228@C #3/FI:229@N reasonable false
Created 0 bonds
> bond #3/FI:229@C #3/FI:230@N reasonable false
Created 0 bonds
> bond #3/FI:230@C #3/FI:231@N reasonable false
Created 0 bonds
> bond #3/FI:231@C #3/FI:232@N reasonable false
Created 0 bonds
> bond #3/FI:232@C #3/FI:233@N reasonable false
Created 0 bonds
> bond #3/FI:233@C #3/FI:234@N reasonable false
Created 0 bonds
> bond #3/FI:234@C #3/FI:235@N reasonable false
Created 0 bonds
> bond #3/FI:235@C #3/FI:236@N reasonable false
Created 0 bonds
> bond #3/FI:236@C #3/FI:237@N reasonable false
Created 0 bonds
> bond #3/FI:237@C #3/FI:238@N reasonable false
Created 0 bonds
> bond #3/FI:238@C #3/FI:239@N reasonable false
Created 0 bonds
> bond #3/FI:239@C #3/FI:240@N reasonable false
Created 0 bonds
> bond #3/FI:240@C #3/FI:241@N reasonable false
Created 0 bonds
> bond #3/FI:241@C #3/FI:242@N reasonable false
Created 0 bonds
> bond #3/FI:242@C #3/FI:243@N reasonable false
Created 0 bonds
> bond #3/FI:243@C #3/FI:244@N reasonable false
Created 0 bonds
> bond #3/FI:244@C #3/FI:245@N reasonable false
Created 0 bonds
> bond #3/FI:245@C #3/FI:246@N reasonable false
Created 0 bonds
> bond #3/FI:246@C #3/FI:247@N reasonable false
Created 0 bonds
> bond #3/FI:247@C #3/FI:248@N reasonable false
Created 0 bonds
> bond #3/FI:248@C #3/FI:249@N reasonable false
Created 0 bonds
> bond #3/FI:249@C #3/FI:250@N reasonable false
Created 1 bond
> bond #3/FI:277@C #3/FI:278@N reasonable false
Created 0 bonds
> bond #3/FI:278@C #3/FI:279@N reasonable false
Created 0 bonds
> bond #3/FI:279@C #3/FI:280@N reasonable false
Created 0 bonds
> bond #3/FI:280@C #3/FI:281@N reasonable false
Created 0 bonds
> bond #3/FI:281@C #3/FI:282@N reasonable false
Created 0 bonds
> bond #3/FI:282@C #3/FI:283@N reasonable false
Created 0 bonds
> bond #3/FI:283@C #3/FI:284@N reasonable false
Created 0 bonds
> bond #3/FI:284@C #3/FI:285@N reasonable false
Created 0 bonds
> bond #3/FI:285@C #3/FI:286@N reasonable false
Created 0 bonds
> bond #3/FI:286@C #3/FI:287@N reasonable false
Created 0 bonds
> bond #3/FI:287@C #3/FI:288@N reasonable false
Created 0 bonds
> bond #3/FI:288@C #3/FI:289@N reasonable false
Created 0 bonds
> bond #3/FI:289@C #3/FI:290@N reasonable false
Created 0 bonds
> bond #3/FI:290@C #3/FI:291@N reasonable false
Created 0 bonds
> bond #3/FI:291@C #3/FI:292@N reasonable false
Created 0 bonds
> bond #3/FI:292@C #3/FI:293@N reasonable false
Created 0 bonds
> bond #3/FI:293@C #3/FI:294@N reasonable false
Created 0 bonds
> bond #3/FI:294@C #3/FI:295@N reasonable false
Created 0 bonds
> bond #3/FI:295@C #3/FI:296@N reasonable false
Created 0 bonds
> bond #3/FI:296@C #3/FI:297@N reasonable false
Created 0 bonds
> bond #3/FI:297@C #3/FI:298@N reasonable false
Created 0 bonds
> bond #3/FI:298@C #3/FI:299@N reasonable false
Created 0 bonds
> bond #3/FI:299@C #3/FI:300@N reasonable false
Created 0 bonds
> bond #3/FI:300@C #3/FI:301@N reasonable false
Created 0 bonds
> bond #3/FI:301@C #3/FI:302@N reasonable false
Created 0 bonds
> bond #3/FI:302@C #3/FI:303@N reasonable false
Created 0 bonds
> bond #3/FI:303@C #3/FI:304@N reasonable false
Created 0 bonds
> bond #3/FI:304@C #3/FI:305@N reasonable false
Created 0 bonds
> bond #3/FI:305@C #3/FI:306@N reasonable false
Created 0 bonds
> bond #3/FI:306@C #3/FI:307@N reasonable false
Created 0 bonds
> bond #3/FI:307@C #3/FI:308@N reasonable false
Created 0 bonds
> bond #3/FI:308@C #3/FI:309@N reasonable false
Created 0 bonds
> bond #3/FI:309@C #3/FI:310@N reasonable false
Created 0 bonds
> bond #3/FI:310@C #3/FI:311@N reasonable false
Created 0 bonds
> bond #3/FI:311@C #3/FI:312@N reasonable false
Created 0 bonds
> bond #3/FI:312@C #3/FI:313@N reasonable false
Created 1 bond
> bond #3/FI:210@C #3/FI:211@N reasonable false
Created 1 bond
> bond #3/FI:313@C #3/FI:314@N reasonable false
Created 0 bonds
> bond #3/FI:55@C #3/FI:56@N reasonable false
Created 1 bond
> bond #3/FI:319@C #3/FI:320@N reasonable false
Created 1 bond
> bond #3/FI:56@C #3/FI:57@N reasonable false
Created 1 bond
> bond #3/FI:318@C #3/FI:319@N reasonable false
Created 1 bond
> bond #3/FI:57@C #3/FI:58@N reasonable false
Created 0 bonds
> bond #3/FI:58@C #3/FI:59@N reasonable false
Created 0 bonds
> bond #3/FI:59@C #3/FI:60@N reasonable false
Created 0 bonds
> bond #3/FI:60@C #3/FI:61@N reasonable false
Created 0 bonds
> bond #3/FI:61@C #3/FI:62@N reasonable false
Created 0 bonds
> bond #3/FI:62@C #3/FI:63@N reasonable false
Created 0 bonds
> bond #3/FI:63@C #3/FI:64@N reasonable false
Created 0 bonds
> bond #3/FI:64@C #3/FI:65@N reasonable false
Created 0 bonds
> bond #3/FI:65@C #3/FI:66@N reasonable false
Created 0 bonds
> bond #3/FI:66@C #3/FI:67@N reasonable false
Created 0 bonds
> bond #3/FI:67@C #3/FI:68@N reasonable false
Created 0 bonds
> bond #3/FI:68@C #3/FI:69@N reasonable false
Created 0 bonds
> bond #3/FI:69@C #3/FI:70@N reasonable false
Created 0 bonds
> bond #3/FI:70@C #3/FI:71@N reasonable false
Created 0 bonds
> bond #3/FI:71@C #3/FI:72@N reasonable false
Created 0 bonds
> bond #3/FI:72@C #3/FI:73@N reasonable false
Created 0 bonds
> bond #3/FI:73@C #3/FI:74@N reasonable false
Created 0 bonds
> bond #3/FI:74@C #3/FI:75@N reasonable false
Created 0 bonds
> bond #3/FI:75@C #3/FI:76@N reasonable false
Created 0 bonds
> bond #3/FI:76@C #3/FI:77@N reasonable false
Created 0 bonds
> bond #3/FI:77@C #3/FI:78@N reasonable false
Created 0 bonds
> bond #3/FI:78@C #3/FI:79@N reasonable false
Created 0 bonds
> bond #3/FI:79@C #3/FI:80@N reasonable false
Created 0 bonds
> bond #3/FI:80@C #3/FI:81@N reasonable false
Created 0 bonds
> bond #3/FI:81@C #3/FI:82@N reasonable false
Created 0 bonds
> bond #3/FI:82@C #3/FI:83@N reasonable false
Created 0 bonds
> bond #3/FI:83@C #3/FI:84@N reasonable false
Created 0 bonds
> bond #3/FI:84@C #3/FI:85@N reasonable false
Created 0 bonds
> bond #3/FI:85@C #3/FI:86@N reasonable false
Created 0 bonds
> bond #3/FI:86@C #3/FI:87@N reasonable false
Created 0 bonds
> bond #3/FI:87@C #3/FI:88@N reasonable false
Created 0 bonds
> bond #3/FI:88@C #3/FI:89@N reasonable false
Created 0 bonds
> bond #3/FI:89@C #3/FI:90@N reasonable false
Created 0 bonds
> bond #3/FI:90@C #3/FI:91@N reasonable false
Created 0 bonds
> bond #3/FI:91@C #3/FI:92@N reasonable false
Created 0 bonds
> bond #3/FI:92@C #3/FI:93@N reasonable false
Created 0 bonds
> bond #3/FI:93@C #3/FI:94@N reasonable false
Created 0 bonds
> bond #3/FI:94@C #3/FI:95@N reasonable false
Created 0 bonds
> bond #3/FI:95@C #3/FI:96@N reasonable false
Created 0 bonds
> bond #3/FI:96@C #3/FI:97@N reasonable false
Created 0 bonds
> bond #3/FI:97@C #3/FI:98@N reasonable false
Created 0 bonds
> bond #3/FI:98@C #3/FI:99@N reasonable false
Created 0 bonds
> bond #3/FI:99@C #3/FI:100@N reasonable false
Created 0 bonds
> bond #3/FI:100@C #3/FI:101@N reasonable false
Created 0 bonds
> bond #3/FI:101@C #3/FI:102@N reasonable false
Created 0 bonds
> bond #3/FI:102@C #3/FI:103@N reasonable false
Created 0 bonds
> bond #3/FI:103@C #3/FI:104@N reasonable false
Created 0 bonds
> bond #3/FI:104@C #3/FI:105@N reasonable false
Created 0 bonds
> bond #3/FI:105@C #3/FI:106@N reasonable false
Created 0 bonds
> bond #3/FI:106@C #3/FI:107@N reasonable false
Created 0 bonds
> bond #3/FI:107@C #3/FI:108@N reasonable false
Created 0 bonds
> bond #3/FI:108@C #3/FI:109@N reasonable false
Created 0 bonds
> bond #3/FI:109@C #3/FI:110@N reasonable false
Created 0 bonds
> bond #3/FI:110@C #3/FI:111@N reasonable false
Created 0 bonds
> bond #3/FI:111@C #3/FI:112@N reasonable false
Created 0 bonds
> bond #3/FI:112@C #3/FI:113@N reasonable false
Created 0 bonds
> bond #3/FI:113@C #3/FI:114@N reasonable false
Created 0 bonds
> bond #3/FI:114@C #3/FI:115@N reasonable false
Created 0 bonds
> bond #3/FI:115@C #3/FI:116@N reasonable false
Created 0 bonds
> bond #3/FI:116@C #3/FI:117@N reasonable false
Created 0 bonds
> bond #3/FI:117@C #3/FI:118@N reasonable false
Created 0 bonds
> bond #3/FI:118@C #3/FI:119@N reasonable false
Created 0 bonds
> bond #3/FI:119@C #3/FI:120@N reasonable false
Created 0 bonds
> bond #3/FI:120@C #3/FI:121@N reasonable false
Created 0 bonds
> bond #3/FI:121@C #3/FI:122@N reasonable false
Created 0 bonds
> bond #3/FI:122@C #3/FI:123@N reasonable false
Created 0 bonds
> bond #3/FI:123@C #3/FI:124@N reasonable false
Created 0 bonds
> bond #3/FI:124@C #3/FI:125@N reasonable false
Created 0 bonds
> bond #3/FI:125@C #3/FI:126@N reasonable false
Created 0 bonds
> bond #3/FI:126@C #3/FI:127@N reasonable false
Created 0 bonds
> bond #3/FI:127@C #3/FI:128@N reasonable false
Created 0 bonds
> bond #3/FI:128@C #3/FI:129@N reasonable false
Created 0 bonds
> bond #3/FI:129@C #3/FI:130@N reasonable false
Created 0 bonds
> bond #3/FI:130@C #3/FI:131@N reasonable false
Created 0 bonds
> bond #3/FI:131@C #3/FI:132@N reasonable false
Created 0 bonds
> bond #3/FI:132@C #3/FI:133@N reasonable false
Created 0 bonds
> bond #3/FI:133@C #3/FI:134@N reasonable false
Created 0 bonds
> bond #3/FI:134@C #3/FI:135@N reasonable false
Created 0 bonds
> bond #3/FI:135@C #3/FI:136@N reasonable false
Created 0 bonds
> bond #3/FI:136@C #3/FI:137@N reasonable false
Created 0 bonds
> bond #3/FI:137@C #3/FI:138@N reasonable false
Created 0 bonds
> bond #3/FI:138@C #3/FI:139@N reasonable false
Created 0 bonds
> bond #3/FI:139@C #3/FI:140@N reasonable false
Created 0 bonds
> bond #3/FI:140@C #3/FI:141@N reasonable false
Created 0 bonds
> bond #3/FI:141@C #3/FI:142@N reasonable false
Created 0 bonds
> bond #3/FI:142@C #3/FI:143@N reasonable false
Created 0 bonds
> bond #3/FI:143@C #3/FI:144@N reasonable false
Created 0 bonds
> bond #3/FI:144@C #3/FI:145@N reasonable false
Created 0 bonds
> bond #3/FI:145@C #3/FI:146@N reasonable false
Created 0 bonds
> bond #3/FI:146@C #3/FI:147@N reasonable false
Created 0 bonds
> bond #3/FI:147@C #3/FI:148@N reasonable false
Created 0 bonds
> bond #3/FI:148@C #3/FI:149@N reasonable false
Created 0 bonds
> bond #3/FI:149@C #3/FI:150@N reasonable false
Created 0 bonds
> bond #3/FI:150@C #3/FI:151@N reasonable false
Created 0 bonds
> bond #3/FI:151@C #3/FI:152@N reasonable false
Created 0 bonds
> bond #3/FI:152@C #3/FI:153@N reasonable false
Created 0 bonds
> bond #3/FI:153@C #3/FI:154@N reasonable false
Created 0 bonds
> bond #3/FI:154@C #3/FI:155@N reasonable false
Created 0 bonds
> bond #3/FI:155@C #3/FI:156@N reasonable false
Created 0 bonds
> bond #3/FI:156@C #3/FI:157@N reasonable false
Created 0 bonds
> bond #3/FI:157@C #3/FI:158@N reasonable false
Created 0 bonds
> bond #3/FI:158@C #3/FI:159@N reasonable false
Created 0 bonds
> bond #3/FI:159@C #3/FI:160@N reasonable false
Created 0 bonds
> bond #3/FI:160@C #3/FI:161@N reasonable false
Created 0 bonds
> bond #3/FI:161@C #3/FI:162@N reasonable false
Created 0 bonds
> bond #3/FI:162@C #3/FI:163@N reasonable false
Created 0 bonds
> bond #3/FI:163@C #3/FI:164@N reasonable false
Created 0 bonds
> bond #3/FI:164@C #3/FI:165@N reasonable false
Created 0 bonds
> bond #3/FI:165@C #3/FI:166@N reasonable false
Created 0 bonds
> bond #3/FI:166@C #3/FI:167@N reasonable false
Created 0 bonds
> bond #3/FI:167@C #3/FI:168@N reasonable false
Created 0 bonds
> bond #3/FI:168@C #3/FI:169@N reasonable false
Created 0 bonds
> bond #3/FI:169@C #3/FI:170@N reasonable false
Created 0 bonds
> bond #3/FI:170@C #3/FI:171@N reasonable false
Created 0 bonds
> bond #3/FI:171@C #3/FI:172@N reasonable false
Created 0 bonds
> bond #3/FI:172@C #3/FI:173@N reasonable false
Created 0 bonds
> bond #3/FI:173@C #3/FI:174@N reasonable false
Created 0 bonds
> bond #3/FI:174@C #3/FI:175@N reasonable false
Created 0 bonds
> bond #3/FI:175@C #3/FI:176@N reasonable false
Created 0 bonds
> bond #3/FI:176@C #3/FI:177@N reasonable false
Created 0 bonds
> bond #3/FI:177@C #3/FI:178@N reasonable false
Created 0 bonds
> bond #3/FI:178@C #3/FI:179@N reasonable false
Created 0 bonds
> bond #3/FI:179@C #3/FI:180@N reasonable false
Created 0 bonds
> bond #3/FI:180@C #3/FI:181@N reasonable false
Created 0 bonds
> bond #3/FI:181@C #3/FI:182@N reasonable false
Created 0 bonds
> bond #3/FI:182@C #3/FI:183@N reasonable false
Created 0 bonds
> bond #3/FI:183@C #3/FI:184@N reasonable false
Created 0 bonds
> bond #3/FI:184@C #3/FI:185@N reasonable false
Created 0 bonds
> bond #3/FI:185@C #3/FI:186@N reasonable false
Created 0 bonds
> bond #3/FI:186@C #3/FI:187@N reasonable false
Created 0 bonds
> bond #3/FI:187@C #3/FI:188@N reasonable false
Created 0 bonds
> bond #3/FI:188@C #3/FI:189@N reasonable false
Created 0 bonds
> bond #3/FI:189@C #3/FI:190@N reasonable false
Created 0 bonds
> bond #3/FI:190@C #3/FI:191@N reasonable false
Created 0 bonds
> bond #3/FI:191@C #3/FI:192@N reasonable false
Created 0 bonds
> bond #3/FI:192@C #3/FI:193@N reasonable false
Created 0 bonds
> bond #3/FI:193@C #3/FI:194@N reasonable false
Created 0 bonds
> bond #3/FI:194@C #3/FI:195@N reasonable false
Created 0 bonds
> bond #3/FI:195@C #3/FI:196@N reasonable false
Created 0 bonds
> bond #3/FI:196@C #3/FI:197@N reasonable false
Created 0 bonds
> bond #3/FI:197@C #3/FI:198@N reasonable false
Created 0 bonds
> bond #3/FI:198@C #3/FI:199@N reasonable false
Created 0 bonds
> bond #3/FI:199@C #3/FI:200@N reasonable false
Created 0 bonds
> bond #3/FI:200@C #3/FI:201@N reasonable false
Created 0 bonds
> bond #3/FI:201@C #3/FI:202@N reasonable false
Created 0 bonds
> bond #3/FI:202@C #3/FI:203@N reasonable false
Created 0 bonds
> bond #3/FI:203@C #3/FI:204@N reasonable false
Created 0 bonds
> bond #3/FI:204@C #3/FI:205@N reasonable false
Created 0 bonds
> bond #3/FI:205@C #3/FI:206@N reasonable false
Created 0 bonds
> bond #3/FI:206@C #3/FI:207@N reasonable false
Created 0 bonds
> bond #3/FI:207@C #3/FI:208@N reasonable false
Created 0 bonds
> bond #3/FI:208@C #3/FI:209@N reasonable false
Created 0 bonds
> bond #3/FI:209@C #3/FI:210@N reasonable false
Created 1 bond
> bond #3/FI:320@C #3/FI:321@N reasonable false
Created 0 bonds
> bond #3/FI:321@C #3/FI:322@N reasonable false
Created 0 bonds
> bond #3/FI:322@C #3/FI:323@N reasonable false
Created 0 bonds
> bond #3/FI:323@C #3/FI:324@N reasonable false
Created 0 bonds
> bond #3/FI:324@C #3/FI:325@N reasonable false
Created 0 bonds
> bond #3/FI:325@C #3/FI:326@N reasonable false
Created 0 bonds
> bond #3/FI:326@C #3/FI:327@N reasonable false
Created 0 bonds
> bond #3/FI:327@C #3/FI:328@N reasonable false
Created 0 bonds
> bond #3/FI:328@C #3/FI:329@N reasonable false
Created 0 bonds
> bond #3/FI:329@C #3/FI:330@N reasonable false
Created 0 bonds
> bond #3/FI:330@C #3/FI:331@N reasonable false
Created 0 bonds
> bond #3/FI:331@C #3/FI:332@N reasonable false
Created 0 bonds
> bond #3/FI:332@C #3/FI:333@N reasonable false
Created 0 bonds
> bond #3/FI:333@C #3/FI:334@N reasonable false
Created 0 bonds
> bond #3/FI:334@C #3/FI:335@N reasonable false
Created 0 bonds
> bond #3/FI:335@C #3/FI:336@N reasonable false
Created 0 bonds
> bond #3/FI:336@C #3/FI:337@N reasonable false
Created 0 bonds
> bond #3/FI:337@C #3/FI:338@N reasonable false
Created 0 bonds
> bond #3/FI:338@C #3/FI:339@N reasonable false
Created 0 bonds
> bond #3/FI:339@C #3/FI:340@N reasonable false
Created 0 bonds
> bond #3/FI:340@C #3/FI:341@N reasonable false
Created 0 bonds
> bond #3/FI:341@C #3/FI:342@N reasonable false
Created 0 bonds
> bond #3/FI:342@C #3/FI:343@N reasonable false
Created 0 bonds
> bond #3/FI:343@C #3/FI:344@N reasonable false
Created 0 bonds
> bond #3/FI:344@C #3/FI:345@N reasonable false
Created 0 bonds
> bond #3/FI:345@C #3/FI:346@N reasonable false
Created 0 bonds
> bond #3/FI:346@C #3/FI:347@N reasonable false
Created 0 bonds
> bond #3/FI:347@C #3/FI:348@N reasonable false
Created 0 bonds
> bond #3/FI:348@C #3/FI:349@N reasonable false
Created 0 bonds
> bond #3/FI:349@C #3/FI:350@N reasonable false
Created 0 bonds
> bond #3/FI:350@C #3/FI:351@N reasonable false
Created 0 bonds
> bond #3/FI:351@C #3/FI:352@N reasonable false
Created 0 bonds
> bond #3/FI:352@C #3/FI:353@N reasonable false
Created 0 bonds
> bond #3/FI:353@C #3/FI:354@N reasonable false
Created 0 bonds
> bond #3/FI:354@C #3/FI:355@N reasonable false
Created 0 bonds
> bond #3/FI:355@C #3/FI:356@N reasonable false
Created 0 bonds
> bond #3/FI:356@C #3/FI:357@N reasonable false
Created 0 bonds
> bond #3/FI:357@C #3/FI:358@N reasonable false
Created 0 bonds
> bond #3/FI:358@C #3/FI:359@N reasonable false
Created 0 bonds
> bond #3/FI:359@C #3/FI:360@N reasonable false
Created 0 bonds
> bond #3/FI:360@C #3/FI:361@N reasonable false
Created 0 bonds
> bond #3/FI:361@C #3/FI:362@N reasonable false
Created 0 bonds
> bond #3/FI:362@C #3/FI:363@N reasonable false
Created 0 bonds
> bond #3/FI:363@C #3/FI:364@N reasonable false
Created 0 bonds
> bond #3/FI:364@C #3/FI:365@N reasonable false
Created 0 bonds
> bond #3/FI:365@C #3/FI:366@N reasonable false
Created 0 bonds
> bond #3/FI:366@C #3/FI:367@N reasonable false
Created 0 bonds
> bond #3/FI:367@C #3/FI:368@N reasonable false
Created 0 bonds
> bond #3/FI:368@C #3/FI:369@N reasonable false
Created 0 bonds
> bond #3/FI:369@C #3/FI:370@N reasonable false
Created 0 bonds
> bond #3/FI:370@C #3/FI:371@N reasonable false
Created 0 bonds
> bond #3/FI:371@C #3/FI:372@N reasonable false
Created 0 bonds
> bond #3/FI:372@C #3/FI:373@N reasonable false
Created 0 bonds
> bond #3/FI:373@C #3/FI:374@N reasonable false
Created 0 bonds
> bond #3/FI:374@C #3/FI:375@N reasonable false
Created 0 bonds
> bond #3/FI:2@C #3/FI:3@N reasonable false
Created 0 bonds
> bond #3/FI:3@C #3/FI:4@N reasonable false
Created 0 bonds
> bond #3/FI:4@C #3/FI:5@N reasonable false
Created 0 bonds
> bond #3/FI:5@C #3/FI:6@N reasonable false
Created 0 bonds
> bond #3/FI:6@C #3/FI:7@N reasonable false
Created 0 bonds
> bond #3/FI:7@C #3/FI:8@N reasonable false
Created 0 bonds
> bond #3/FI:8@C #3/FI:9@N reasonable false
Created 0 bonds
> bond #3/FI:9@C #3/FI:10@N reasonable false
Created 0 bonds
> bond #3/FI:10@C #3/FI:11@N reasonable false
Created 0 bonds
> bond #3/FI:11@C #3/FI:12@N reasonable false
Created 0 bonds
> bond #3/FI:12@C #3/FI:13@N reasonable false
Created 0 bonds
> bond #3/FI:13@C #3/FI:14@N reasonable false
Created 0 bonds
> bond #3/FI:14@C #3/FI:15@N reasonable false
Created 0 bonds
> bond #3/FI:15@C #3/FI:16@N reasonable false
Created 0 bonds
> bond #3/FI:16@C #3/FI:17@N reasonable false
Created 0 bonds
> bond #3/FI:17@C #3/FI:18@N reasonable false
Created 0 bonds
> bond #3/FI:18@C #3/FI:19@N reasonable false
Created 0 bonds
> bond #3/FI:19@C #3/FI:20@N reasonable false
Created 0 bonds
> bond #3/FI:20@C #3/FI:21@N reasonable false
Created 0 bonds
> bond #3/FI:21@C #3/FI:22@N reasonable false
Created 0 bonds
> bond #3/FI:22@C #3/FI:23@N reasonable false
Created 0 bonds
> bond #3/FI:23@C #3/FI:24@N reasonable false
Created 0 bonds
> bond #3/FI:24@C #3/FI:25@N reasonable false
Created 0 bonds
> bond #3/FI:25@C #3/FI:26@N reasonable false
Created 0 bonds
> bond #3/FI:26@C #3/FI:27@N reasonable false
Created 0 bonds
> bond #3/FI:27@C #3/FI:28@N reasonable false
Created 0 bonds
> bond #3/FI:28@C #3/FI:29@N reasonable false
Created 0 bonds
> bond #3/FI:29@C #3/FI:30@N reasonable false
Created 0 bonds
> bond #3/FI:30@C #3/FI:31@N reasonable false
Created 0 bonds
> bond #3/FI:31@C #3/FI:32@N reasonable false
Created 0 bonds
> bond #3/FI:32@C #3/FI:33@N reasonable false
Created 0 bonds
> bond #3/FI:33@C #3/FI:34@N reasonable false
Created 0 bonds
> bond #3/FI:34@C #3/FI:35@N reasonable false
Created 0 bonds
> bond #3/FI:35@C #3/FI:36@N reasonable false
Created 0 bonds
> bond #3/FI:36@C #3/FI:37@N reasonable false
Created 0 bonds
> bond #3/FI:37@C #3/FI:38@N reasonable false
Created 0 bonds
> bond #3/FI:38@C #3/FI:39@N reasonable false
Created 0 bonds
> bond #3/FI:39@C #3/FI:40@N reasonable false
Created 0 bonds
> bond #3/FI:40@C #3/FI:41@N reasonable false
Created 0 bonds
> bond #3/FI:41@C #3/FI:42@N reasonable false
Created 0 bonds
> bond #3/FI:42@C #3/FI:43@N reasonable false
Created 0 bonds
> bond #3/FI:43@C #3/FI:44@N reasonable false
Created 0 bonds
> bond #3/FI:44@C #3/FI:45@N reasonable false
Created 0 bonds
> bond #3/FI:45@C #3/FI:46@N reasonable false
Created 0 bonds
> bond #3/FI:46@C #3/FI:47@N reasonable false
Created 0 bonds
> bond #3/FI:47@C #3/FI:48@N reasonable false
Created 0 bonds
> bond #3/FI:48@C #3/FI:49@N reasonable false
Created 0 bonds
> bond #3/FI:49@C #3/FI:50@N reasonable false
Created 0 bonds
> bond #3/FI:50@C #3/FI:51@N reasonable false
Created 0 bonds
> bond #3/FI:51@C #3/FI:52@N reasonable false
Created 0 bonds
> bond #3/FI:52@C #3/FI:53@N reasonable false
Created 0 bonds
> bond #3/FI:53@C #3/FI:54@N reasonable false
Created 0 bonds
> bond #3/FI:54@C #3/FI:55@N reasonable false
Created 1 bond
> bond #3/FI:250@C #3/FI:251@N reasonable false
Created 0 bonds
> bond #3/FI:251@C #3/FI:252@N reasonable false
Created 0 bonds
> bond #3/FI:252@C #3/FI:253@N reasonable false
Created 0 bonds
> bond #3/FI:253@C #3/FI:254@N reasonable false
Created 0 bonds
> bond #3/FI:254@C #3/FI:255@N reasonable false
Created 0 bonds
> bond #3/FI:255@C #3/FI:256@N reasonable false
Created 0 bonds
> bond #3/FI:256@C #3/FI:257@N reasonable false
Created 0 bonds
> bond #3/FI:257@C #3/FI:258@N reasonable false
Created 0 bonds
> bond #3/FI:258@C #3/FI:259@N reasonable false
Created 0 bonds
> bond #3/FI:259@C #3/FI:260@N reasonable false
Created 0 bonds
> bond #3/FI:260@C #3/FI:261@N reasonable false
Created 0 bonds
> bond #3/FI:261@C #3/FI:262@N reasonable false
Created 0 bonds
> bond #3/FI:262@C #3/FI:263@N reasonable false
Created 0 bonds
> bond #3/FI:263@C #3/FI:264@N reasonable false
Created 0 bonds
> bond #3/FI:264@C #3/FI:265@N reasonable false
Created 0 bonds
> bond #3/FI:265@C #3/FI:266@N reasonable false
Created 0 bonds
> bond #3/FI:266@C #3/FI:267@N reasonable false
Created 0 bonds
> bond #3/FI:267@C #3/FI:268@N reasonable false
Created 0 bonds
> bond #3/FI:268@C #3/FI:269@N reasonable false
Created 0 bonds
> bond #3/FI:269@C #3/FI:270@N reasonable false
Created 0 bonds
> bond #3/FI:270@C #3/FI:271@N reasonable false
Created 0 bonds
> bond #3/FI:271@C #3/FI:272@N reasonable false
Created 0 bonds
> bond #3/FI:272@C #3/FI:273@N reasonable false
Created 0 bonds
> bond #3/FI:273@C #3/FI:274@N reasonable false
Created 0 bonds
> bond #3/FI:274@C #3/FI:275@N reasonable false
Created 0 bonds
> bond #3/FI:275@C #3/FI:276@N reasonable false
Created 0 bonds
> bond #3/FI:276@C #3/FI:277@N reasonable false
Created 1 bond
> swapaa #3/FI:2 PHE
Using Dunbrack library
mutadedModel #3/FI LYS 2: phi none, psi -19.1 trans
Applying PHE rotamer (chi angles: -66.9 97.7) to mutadedModel #3/FI PHE 2
> color #3/FI:2 yellow
> swapaa #3/FI:5 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 5: phi -87.1, psi -28.3 trans
Applying VAL rotamer (chi angles: 174.4) to mutadedModel #3/FI VAL 5
> color #3/FI:5 yellow
> swapaa #3/FI:6 ARG
Using Dunbrack library
mutadedModel #3/FI TYR 6: phi -120.4, psi 50.1 trans
Applying ARG rotamer (chi angles: 62.5 -177.2 -179.0 -178.8) to mutadedModel
#3/FI ARG 6
> color #3/FI:6 yellow
> swapaa #3/FI:7 PHE
Using Dunbrack library
mutadedModel #3/FI HIS 7: phi -154.7, psi 129.7 trans
Applying PHE rotamer (chi angles: -61.8 90.3) to mutadedModel #3/FI PHE 7
> color #3/FI:7 yellow
> swapaa #3/FI:9 LEU
Using Dunbrack library
mutadedModel #3/FI GLU 9: phi -61.4, psi -41.8 trans
Applying LEU rotamer (chi angles: -69.2 172.7) to mutadedModel #3/FI LEU 9
> color #3/FI:9 yellow
> swapaa #3/FI:10 PHE
Using Dunbrack library
mutadedModel #3/FI LYS 10: phi -79.3, psi -18.7 trans
Applying PHE rotamer (chi angles: -70.7 103.3) to mutadedModel #3/FI PHE 10
> color #3/FI:10 yellow
> swapaa #3/FI:11 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 11: phi -68.4, psi -39.4 trans
Applying PHE rotamer (chi angles: -175.1 50.3) to mutadedModel #3/FI PHE 11
> color #3/FI:11 yellow
> swapaa #3/FI:12 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 12: phi -74.3, psi -30.7 trans
Applying LEU rotamer (chi angles: -67.8 174.1) to mutadedModel #3/FI LEU 12
> color #3/FI:12 yellow
> swapaa #3/FI:13 LEU
Using Dunbrack library
mutadedModel #3/FI GLU 13: phi -73.6, psi -43.4 trans
Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/FI LEU 13
> color #3/FI:13 yellow
> swapaa #3/FI:14 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 14: phi -65.3, psi -44.1 trans
Applying PHE rotamer (chi angles: -175.1 -13.5) to mutadedModel #3/FI PHE 14
> color #3/FI:14 yellow
> swapaa #3/FI:17 LEU
Using Dunbrack library
mutadedModel #3/FI ASP 17: phi -120.7, psi -45.6 trans
Applying LEU rotamer (chi angles: -62.6 176.7) to mutadedModel #3/FI LEU 17
> color #3/FI:17 yellow
> swapaa #3/FI:18 CYS
Using Dunbrack library
mutadedModel #3/FI ILE 18: phi -96.1, psi -43.5 trans
Applying CYS rotamer (chi angles: -64.1) to mutadedModel #3/FI CYS 18
> color #3/FI:18 yellow
> swapaa #3/FI:19 CYS
Using Dunbrack library
mutadedModel #3/FI ASP 19: phi -102.0, psi 8.8 trans
Applying CYS rotamer (chi angles: -176.9) to mutadedModel #3/FI CYS 19
> color #3/FI:19 yellow
> swapaa #3/FI:20 LEU
Using Dunbrack library
mutadedModel #3/FI GLU 20: phi -50.6, psi 133.2 trans
Applying LEU rotamer (chi angles: -175.5 67.0) to mutadedModel #3/FI LEU 20
> color #3/FI:20 yellow
> swapaa #3/FI:21 LEU
Using Dunbrack library
mutadedModel #3/FI LYS 21: phi -105.9, psi 126.0 trans
Applying LEU rotamer (chi angles: 177.1 65.8) to mutadedModel #3/FI LEU 21
> color #3/FI:21 yellow
> swapaa #3/FI:25 CYS
Using Dunbrack library
mutadedModel #3/FI SER 25: phi -94.2, psi 56.4 trans
Applying CYS rotamer (chi angles: 64.7) to mutadedModel #3/FI CYS 25
> color #3/FI:25 yellow
> swapaa #3/FI:26 LEU
Using Dunbrack library
mutadedModel #3/FI GLN 26: phi -98.2, psi 144.4 trans
Applying LEU rotamer (chi angles: -60.3 176.7) to mutadedModel #3/FI LEU 26
> color #3/FI:26 yellow
> swapaa #3/FI:27 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 27: phi -86.4, psi 173.1 trans
Applying LEU rotamer (chi angles: -59.4 177.0) to mutadedModel #3/FI LEU 27
> color #3/FI:27 yellow
> swapaa #3/FI:28 ARG
Using Dunbrack library
mutadedModel #3/FI ALA 28: phi -69.3, psi -15.1 trans
Applying ARG rotamer (chi angles: -69.3 178.4 -179.9 174.0) to mutadedModel
#3/FI ARG 28
> color #3/FI:28 yellow
> swapaa #3/FI:29 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 29: phi -63.0, psi -12.6 trans
Applying VAL rotamer (chi angles: -61.2) to mutadedModel #3/FI VAL 29
> color #3/FI:29 yellow
> swapaa #3/FI:30 TYR
Using Dunbrack library
mutadedModel #3/FI ARG 30: phi -71.6, psi -26.2 trans
Applying TYR rotamer (chi angles: -171.9 75.2) to mutadedModel #3/FI TYR 30
> color #3/FI:30 yellow
> swapaa #3/FI:32 VAL
Using Dunbrack library
mutadedModel #3/FI THR 32: phi -84.3, psi -20.9 trans
Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/FI VAL 32
> color #3/FI:32 yellow
> swapaa #3/FI:35 SER
Using Dunbrack library
mutadedModel #3/FI ALA 35: phi -65.9, psi -53.6 trans
Applying SER rotamer (chi angles: 63.0) to mutadedModel #3/FI SER 35
> color #3/FI:35 yellow
> swapaa #3/FI:36 LEU
Using Dunbrack library
mutadedModel #3/FI PHE 36: phi -32.1, psi -80.2 trans
Applying LEU rotamer (chi angles: -179.8 62.3) to mutadedModel #3/FI LEU 36
> color #3/FI:36 yellow
> swapaa #3/FI:39 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 39: phi -63.9, psi -37.4 trans
Applying PHE rotamer (chi angles: -74.0 106.9) to mutadedModel #3/FI PHE 39
> color #3/FI:39 yellow
> swapaa #3/FI:40 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 40: phi -65.8, psi -42.6 trans
Applying ILE rotamer (chi angles: -167.3 64.2) to mutadedModel #3/FI ILE 40
> color #3/FI:40 yellow
> swapaa #3/FI:41 CYS
Using Dunbrack library
mutadedModel #3/FI GLU 41: phi -57.4, psi -45.7 trans
Applying CYS rotamer (chi angles: 61.3) to mutadedModel #3/FI CYS 41
> color #3/FI:41 yellow
> swapaa #3/FI:42 MET
Using Dunbrack library
mutadedModel #3/FI ASP 42: phi -65.5, psi -40.0 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/FI MET
42
> color #3/FI:42 yellow
> swapaa #3/FI:43 GLN
Using Dunbrack library
mutadedModel #3/FI LEU 43: phi -60.7, psi -58.1 trans
Applying GLN rotamer (chi angles: -176.6 66.4 102.7) to mutadedModel #3/FI GLN
43
> color #3/FI:43 yellow
> swapaa #3/FI:44 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 44: phi -43.4, psi -26.3 trans
Applying ILE rotamer (chi angles: -67.5 168.5) to mutadedModel #3/FI ILE 44
> color #3/FI:44 yellow
> swapaa #3/FI:45 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 45: phi -86.0, psi -33.7 trans
Applying ILE rotamer (chi angles: -66.2 169.1) to mutadedModel #3/FI ILE 45
> color #3/FI:45 yellow
> swapaa #3/FI:46 CYS
Using Dunbrack library
mutadedModel #3/FI LEU 46: phi -65.1, psi -20.8 trans
Applying CYS rotamer (chi angles: -67.2) to mutadedModel #3/FI CYS 46
> color #3/FI:46 yellow
> swapaa #3/FI:48 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 48: phi -83.6, psi -31.2 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 48
> color #3/FI:48 yellow
> swapaa #3/FI:54 PHE
Using Dunbrack library
mutadedModel #3/FI GLY 54: phi -132.7, psi 124.6 trans
Applying PHE rotamer (chi angles: -177.5 102.3) to mutadedModel #3/FI PHE 54
> color #3/FI:54 yellow
> swapaa #3/FI:56 SER
Using Dunbrack library
mutadedModel #3/FI ALA 56: phi -121.4, psi -126.0 cis
Applying SER rotamer (chi angles: -63.8) to mutadedModel #3/FI SER 56
> color #3/FI:56 yellow
> swapaa #3/FI:57 CYS
Using Dunbrack library
mutadedModel #3/FI VAL 57: phi -149.4, psi -143.5 trans
Applying CYS rotamer (chi angles: 63.6) to mutadedModel #3/FI CYS 57
> color #3/FI:57 yellow
> swapaa #3/FI:58 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 58: phi -92.4, psi 152.0 trans
Applying PHE rotamer (chi angles: -69.3 93.9) to mutadedModel #3/FI PHE 58
> color #3/FI:58 yellow
> swapaa #3/FI:60 CYS
Using Dunbrack library
mutadedModel #3/FI ASP 60: phi -108.8, psi -15.1 trans
Applying CYS rotamer (chi angles: 67.2) to mutadedModel #3/FI CYS 60
> color #3/FI:60 yellow
> swapaa #3/FI:64 TYR
Using Dunbrack library
mutadedModel #3/FI ARG 64: phi -62.2, psi -17.9 trans
Applying TYR rotamer (chi angles: -71.9 107.4) to mutadedModel #3/FI TYR 64
> color #3/FI:64 yellow
> swapaa #3/FI:66 VAL
Using Dunbrack library
mutadedModel #3/FI THR 66: phi -60.8, psi -46.6 trans
Applying VAL rotamer (chi angles: 171.3) to mutadedModel #3/FI VAL 66
> color #3/FI:66 yellow
> swapaa #3/FI:67 LEU
Using Dunbrack library
mutadedModel #3/FI ILE 67: phi -73.6, psi -13.4 trans
Applying LEU rotamer (chi angles: -174.1 -78.3) to mutadedModel #3/FI LEU 67
> color #3/FI:67 yellow
> swapaa #3/FI:68 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 68: phi -77.5, psi -11.6 trans
Applying PHE rotamer (chi angles: -166.7 74.3) to mutadedModel #3/FI PHE 68
> color #3/FI:68 yellow
> swapaa #3/FI:70 TRP
Using Dunbrack library
mutadedModel #3/FI TYR 70: phi -86.0, psi 0.4 trans
Applying TRP rotamer (chi angles: -66.6 -16.1) to mutadedModel #3/FI TRP 70
> color #3/FI:70 yellow
> swapaa #3/FI:71 ASP
Using Dunbrack library
mutadedModel #3/FI ASN 71: phi -95.0, psi 4.1 trans
Applying ASP rotamer (chi angles: -67.2 -26.9) to mutadedModel #3/FI ASP 71
> color #3/FI:71 yellow
> swapaa #3/FI:73 ASP
Using Dunbrack library
mutadedModel #3/FI GLU 73: phi -51.6, psi 106.4 trans
Applying ASP rotamer (chi angles: 63.6 6.7) to mutadedModel #3/FI ASP 73
> color #3/FI:73 yellow
> swapaa #3/FI:74 LEU
Using Dunbrack library
mutadedModel #3/FI GLU 74: phi 84.9, psi 29.9 trans
Applying LEU rotamer (chi angles: -81.8 -61.3) to mutadedModel #3/FI LEU 74
> color #3/FI:74 yellow
> swapaa #3/FI:77 VAL
Using Dunbrack library
mutadedModel #3/FI ASP 77: phi -82.2, psi -32.2 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 77
> color #3/FI:77 yellow
> swapaa #3/FI:82 HIS
Using Dunbrack library
mutadedModel #3/FI CYS 82: phi -55.4, psi -61.2 trans
Applying HIS rotamer (chi angles: 180.0 17.9) to mutadedModel #3/FI HIS 82
> color #3/FI:82 yellow
> swapaa #3/FI:85 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 85: phi -59.9, psi -39.4 trans
Applying PHE rotamer (chi angles: -74.0 14.4) to mutadedModel #3/FI PHE 85
> color #3/FI:85 yellow
> swapaa #3/FI:87 SER
Using Dunbrack library
mutadedModel #3/FI VAL 87: phi -78.6, psi -37.8 trans
Applying SER rotamer (chi angles: 64.5) to mutadedModel #3/FI SER 87
> color #3/FI:87 yellow
> swapaa #3/FI:93 LEU
Using Dunbrack library
mutadedModel #3/FI MET 93: phi -72.6, psi -48.1 trans
Applying LEU rotamer (chi angles: 178.6 60.3) to mutadedModel #3/FI LEU 93
> color #3/FI:93 yellow
> swapaa #3/FI:94 TYR
Using Dunbrack library
mutadedModel #3/FI PHE 94: phi -55.7, psi -21.2 trans
Applying TYR rotamer (chi angles: -71.9 107.4) to mutadedModel #3/FI TYR 94
> color #3/FI:94 yellow
> swapaa #3/FI:95 VAL
Using Dunbrack library
mutadedModel #3/FI GLU 95: phi -78.5, psi -25.7 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 95
> color #3/FI:95 yellow
> swapaa #3/FI:96 HIS
Using Dunbrack library
mutadedModel #3/FI PHE 96: phi -88.7, psi -1.6 trans
Applying HIS rotamer (chi angles: -173.6 67.7) to mutadedModel #3/FI HIS 96
> color #3/FI:96 yellow
> swapaa #3/FI:99 LYS
Using Dunbrack library
mutadedModel #3/FI ARG 99: phi -63.6, psi -37.8 trans
Applying LYS rotamer (chi angles: 177.8 -92.7 -85.3 47.8) to mutadedModel
#3/FI LYS 99
> color #3/FI:99 yellow
> swapaa #3/FI:100 CYS
Using Dunbrack library
mutadedModel #3/FI VAL 100: phi -77.0, psi -22.7 trans
Applying CYS rotamer (chi angles: -66.4) to mutadedModel #3/FI CYS 100
> color #3/FI:100 yellow
> swapaa #3/FI:102 VAL
Using Dunbrack library
mutadedModel #3/FI GLU 102: phi -82.9, psi -23.3 trans
Applying VAL rotamer (chi angles: -59.7) to mutadedModel #3/FI VAL 102
> color #3/FI:102 yellow
> swapaa #3/FI:104 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 104: phi 29.9, psi 67.1 trans
Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 104
> color #3/FI:104 yellow
> swapaa #3/FI:108 ASP
Using Dunbrack library
mutadedModel #3/FI ALA 108: phi -92.4, psi 6.2 trans
Applying ASP rotamer (chi angles: 64.3 -2.2) to mutadedModel #3/FI ASP 108
> color #3/FI:108 yellow
> swapaa #3/FI:109 THR
Using Dunbrack library
mutadedModel #3/FI ASP 109: phi -133.1, psi -94.7 trans
Applying THR rotamer (chi angles: -60.7) to mutadedModel #3/FI THR 109
> color #3/FI:109 yellow
> swapaa #3/FI:110 HIS
Using Dunbrack library
mutadedModel #3/FI ARG 110: phi -169.2, psi 145.6 trans
Applying HIS rotamer (chi angles: -170.6 -106.0) to mutadedModel #3/FI HIS 110
> color #3/FI:110 yellow
> swapaa #3/FI:111 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 111: phi -78.9, psi 32.6 trans
Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 111
> color #3/FI:111 yellow
> swapaa #3/FI:113 VAL
Using Dunbrack library
mutadedModel #3/FI ASP 113: phi -78.4, psi -28.2 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 113
> color #3/FI:113 yellow
> swapaa #3/FI:116 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 116: phi -68.1, psi -45.0 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/FI VAL 116
> color #3/FI:116 yellow
> swapaa #3/FI:119 ILE
Using Dunbrack library
mutadedModel #3/FI LYS 119: phi -66.9, psi -35.8 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/FI ILE 119
> color #3/FI:119 yellow
> swapaa #3/FI:121 TYR
Using Dunbrack library
mutadedModel #3/FI PHE 121: phi -78.4, psi -31.2 trans
Applying TYR rotamer (chi angles: -174.2 99.6) to mutadedModel #3/FI TYR 121
> color #3/FI:121 yellow
> swapaa #3/FI:124 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 124: phi -97.3, psi -34.1 trans
Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/FI ILE 124
> color #3/FI:124 yellow
> swapaa #3/FI:126 VAL
Using Dunbrack library
mutadedModel #3/FI GLU 126: phi -66.6, psi -41.7 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/FI VAL 126
> color #3/FI:126 yellow
> swapaa #3/FI:127 ILE
Using Dunbrack library
mutadedModel #3/FI THR 127: phi -65.5, psi -38.9 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/FI ILE 127
> color #3/FI:127 yellow
> swapaa #3/FI:128 GLY
Using Dunbrack library
Swapping mutadedModel #3/FI ALA 128 to GLY
> color #3/FI:128 yellow
> swapaa #3/FI:130 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 130: phi -57.3, psi -61.2 trans
Applying ILE rotamer (chi angles: -67.4 168.1) to mutadedModel #3/FI ILE 130
> color #3/FI:130 yellow
> swapaa #3/FI:132 TYR
Using Dunbrack library
mutadedModel #3/FI PHE 132: phi -69.0, psi -25.3 trans
Applying TYR rotamer (chi angles: -171.9 50.3) to mutadedModel #3/FI TYR 132
> color #3/FI:132 yellow
> swapaa #3/FI:135 PRO
Using Dunbrack library
mutadedModel #3/FI SER 135: phi -89.1, psi -10.4 trans
Applying PRO rotamer (chi angles: 33.5 -36.3) to mutadedModel #3/FI PRO 135
> color #3/FI:135 yellow
> swapaa #3/FI:136 CYS
Using Dunbrack library
mutadedModel #3/FI LEU 136: phi 53.2, psi 56.4 trans
Applying CYS rotamer (chi angles: -62.0) to mutadedModel #3/FI CYS 136
> color #3/FI:136 yellow
> swapaa #3/FI:138 MET
Using Dunbrack library
mutadedModel #3/FI PHE 138: phi -79.9, psi -29.4 trans
Applying MET rotamer (chi angles: -67.1 177.9 70.9) to mutadedModel #3/FI MET
138
> color #3/FI:138 yellow
> swapaa #3/FI:139 MET
Using Dunbrack library
mutadedModel #3/FI LEU 139: phi -77.5, psi -37.4 trans
Applying MET rotamer (chi angles: -67.9 -58.6 -67.5) to mutadedModel #3/FI MET
139
> color #3/FI:139 yellow
> swapaa #3/FI:140 SER
Using Dunbrack library
mutadedModel #3/FI ALA 140: phi -71.7, psi -38.4 trans
Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/FI SER 140
> color #3/FI:140 yellow
> swapaa #3/FI:141 TYR
Using Dunbrack library
mutadedModel #3/FI ARG 141: phi -71.1, psi -45.6 trans
Applying TYR rotamer (chi angles: 179.6 77.9) to mutadedModel #3/FI TYR 141
> color #3/FI:141 yellow
> swapaa #3/FI:145 THR
Using Dunbrack library
mutadedModel #3/FI VAL 145: phi -72.0, psi -38.3 trans
Applying THR rotamer (chi angles: -60.5) to mutadedModel #3/FI THR 145
> color #3/FI:145 yellow
> swapaa #3/FI:146 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 146: phi -77.6, psi -44.9 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/FI VAL 146
> color #3/FI:146 yellow
> swapaa #3/FI:149 ASN
Using Dunbrack library
mutadedModel #3/FI GLN 149: phi -58.8, psi -39.9 trans
Applying ASN rotamer (chi angles: -73.2 -78.5) to mutadedModel #3/FI ASN 149
> color #3/FI:149 yellow
> swapaa #3/FI:150 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 150: phi -72.2, psi -28.1 trans
Applying ILE rotamer (chi angles: -67.2 169.2) to mutadedModel #3/FI ILE 150
> color #3/FI:150 yellow
> swapaa #3/FI:151 LEU
Using Dunbrack library
mutadedModel #3/FI ILE 151: phi -79.0, psi -26.4 trans
Applying LEU rotamer (chi angles: -175.8 59.2) to mutadedModel #3/FI LEU 151
> color #3/FI:151 yellow
> swapaa #3/FI:154 VAL
Using Dunbrack library
mutadedModel #3/FI GLU 154: phi -51.8, psi 123.5 trans
Applying VAL rotamer (chi angles: 174.5) to mutadedModel #3/FI VAL 154
> color #3/FI:154 yellow
> swapaa #3/FI:156 VAL
Using Dunbrack library
mutadedModel #3/FI ASP 156: phi -2.1, psi -7.0 trans
Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/FI VAL 156
> color #3/FI:156 yellow
> swapaa #3/FI:157 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 157: phi -114.0, psi -35.9 trans
Applying ILE rotamer (chi angles: -63.2 170.4) to mutadedModel #3/FI ILE 157
> color #3/FI:157 yellow
> swapaa #3/FI:159 THR
Using Dunbrack library
mutadedModel #3/FI LEU 159: phi -73.4, psi -55.7 trans
Applying THR rotamer (chi angles: -61.3) to mutadedModel #3/FI THR 159
> color #3/FI:159 yellow
> swapaa #3/FI:160 TRP
Using Dunbrack library
mutadedModel #3/FI LYS 160: phi -48.3, psi -38.1 trans
Applying TRP rotamer (chi angles: -71.7 109.5) to mutadedModel #3/FI TRP 160
> color #3/FI:160 yellow
> swapaa #3/FI:162 CYS
Using Dunbrack library
mutadedModel #3/FI VAL 162: phi -65.5, psi -28.3 trans
Applying CYS rotamer (chi angles: -69.3) to mutadedModel #3/FI CYS 162
> color #3/FI:162 yellow
> swapaa #3/FI:165 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 165: phi -85.8, psi -33.5 trans
Applying ILE rotamer (chi angles: -66.2 169.1) to mutadedModel #3/FI ILE 165
> color #3/FI:165 yellow
> swapaa #3/FI:166 TRP
Using Dunbrack library
mutadedModel #3/FI PHE 166: phi -78.3, psi -31.9 trans
Applying TRP rotamer (chi angles: -70.5 14.0) to mutadedModel #3/FI TRP 166
> color #3/FI:166 yellow
> swapaa #3/FI:169 GLU
Using Dunbrack library
mutadedModel #3/FI ASP 169: phi -53.1, psi 5.6 trans
Applying GLU rotamer (chi angles: 66.3 -85.2 44.9) to mutadedModel #3/FI GLU
169
> color #3/FI:169 yellow
> swapaa #3/FI:170 TYR
Using Dunbrack library
mutadedModel #3/FI PHE 170: phi -137.7, psi 152.2 trans
Applying TYR rotamer (chi angles: -179.4 55.3) to mutadedModel #3/FI TYR 170
> color #3/FI:170 yellow
> swapaa #3/FI:172 ASN
Using Dunbrack library
mutadedModel #3/FI THR 172: phi -105.6, psi -169.5 trans
Applying ASN rotamer (chi angles: 63.9 104.5) to mutadedModel #3/FI ASN 172
> color #3/FI:172 yellow
> swapaa #3/FI:173 ASP
Using Dunbrack library
mutadedModel #3/FI SER 173: phi -72.1, psi -28.9 trans
Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/FI ASP 173
> color #3/FI:173 yellow
> swapaa #3/FI:180 HIS
Using Dunbrack library
mutadedModel #3/FI PHE 180: phi -65.1, psi -40.5 trans
Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/FI HIS 180
> color #3/FI:180 yellow
> swapaa #3/FI:183 HIS
Using Dunbrack library
mutadedModel #3/FI ARG 183: phi -87.6, psi 4.1 trans
Applying HIS rotamer (chi angles: -173.6 -25.6) to mutadedModel #3/FI HIS 183
> color #3/FI:183 yellow
> swapaa #3/FI:184 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 184: phi -110.0, psi -11.8 trans
Applying VAL rotamer (chi angles: -61.0) to mutadedModel #3/FI VAL 184
> color #3/FI:184 yellow
> swapaa #3/FI:185 LEU
Using Dunbrack library
mutadedModel #3/FI ILE 185: phi -88.0, psi -52.7 trans
Applying LEU rotamer (chi angles: -86.5 61.2) to mutadedModel #3/FI LEU 185
> color #3/FI:185 yellow
> swapaa #3/FI:193 VAL
Using Dunbrack library
mutadedModel #3/FI ILE 193: phi -78.1, psi -31.7 trans
Applying VAL rotamer (chi angles: 173.7) to mutadedModel #3/FI VAL 193
> color #3/FI:193 yellow
> swapaa #3/FI:194 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 194: phi -69.4, psi -33.9 trans
Applying ILE rotamer (chi angles: -67.2 169.2) to mutadedModel #3/FI ILE 194
> color #3/FI:194 yellow
> swapaa #3/FI:195 PHE
Using Dunbrack library
mutadedModel #3/FI ILE 195: phi -68.7, psi -33.3 trans
Applying PHE rotamer (chi angles: -73.1 132.8) to mutadedModel #3/FI PHE 195
> color #3/FI:195 yellow
> swapaa #3/FI:196 MET
Using Dunbrack library
mutadedModel #3/FI SER 196: phi -65.1, psi -35.0 trans
Applying MET rotamer (chi angles: -68.6 -56.5 -66.4) to mutadedModel #3/FI MET
196
> color #3/FI:196 yellow
> swapaa #3/FI:197 HIS
Using Dunbrack library
mutadedModel #3/FI ASN 197: phi -70.3, psi -37.9 trans
Applying HIS rotamer (chi angles: -176.1 68.7) to mutadedModel #3/FI HIS 197
> color #3/FI:197 yellow
> swapaa #3/FI:200 CYS
Using Dunbrack library
mutadedModel #3/FI GLU 200: phi -70.1, psi -23.3 trans
Applying CYS rotamer (chi angles: -67.2) to mutadedModel #3/FI CYS 200
> color #3/FI:200 yellow
> swapaa #3/FI:202 HIS
Using Dunbrack library
mutadedModel #3/FI PHE 202: phi -70.7, psi -10.2 trans
Applying HIS rotamer (chi angles: -68.6 81.6) to mutadedModel #3/FI HIS 202
> color #3/FI:202 yellow
> swapaa #3/FI:203 TYR
Using Dunbrack library
mutadedModel #3/FI TRP 203: phi -89.8, psi -35.3 trans
Applying TYR rotamer (chi angles: -177.8 20.3) to mutadedModel #3/FI TYR 203
> color #3/FI:203 yellow
> swapaa #3/FI:204 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 204: phi -123.3, psi -173.3 trans
Applying PHE rotamer (chi angles: 63.6 91.8) to mutadedModel #3/FI PHE 204
> color #3/FI:204 yellow
> swapaa #3/FI:205 MET
Using Dunbrack library
mutadedModel #3/FI LYS 205: phi -102.7, psi 124.1 trans
Applying MET rotamer (chi angles: -178.3 179.3 -71.1) to mutadedModel #3/FI
MET 205
> color #3/FI:205 yellow
> swapaa #3/FI:208 ASP
Using Dunbrack library
mutadedModel #3/FI THR 208: phi -108.2, psi 139.8 trans
Applying ASP rotamer (chi angles: -174.8 -11.3) to mutadedModel #3/FI ASP 208
> color #3/FI:208 yellow
> swapaa #3/FI:210 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 210: phi 16.4, psi -11.7 trans
Applying PHE rotamer (chi angles: -67.2 96.4) to mutadedModel #3/FI PHE 210
> color #3/FI:210 yellow
> swapaa #3/FI:211 CYS
Using Dunbrack library
mutadedModel #3/FI THR 211: phi -1.1, psi 16.9 trans
Applying CYS rotamer (chi angles: -177.4) to mutadedModel #3/FI CYS 211
> color #3/FI:211 yellow
> swapaa #3/FI:214 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 214: phi -69.7, psi 132.6 trans
Applying PHE rotamer (chi angles: -177.5 75.8) to mutadedModel #3/FI PHE 214
> color #3/FI:214 yellow
> swapaa #3/FI:216 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 216: phi -107.4, psi 147.4 trans
Applying PHE rotamer (chi angles: -66.1 90.5) to mutadedModel #3/FI PHE 216
> color #3/FI:216 yellow
> swapaa #3/FI:217 TYR
Using Dunbrack library
mutadedModel #3/FI TRP 217: phi -42.0, psi -16.0 trans
Applying TYR rotamer (chi angles: -72.0 108.3) to mutadedModel #3/FI TYR 217
> color #3/FI:217 yellow
> swapaa #3/FI:218 CYS
Using Dunbrack library
mutadedModel #3/FI ASP 218: phi -85.4, psi -17.2 trans
Applying CYS rotamer (chi angles: 67.4) to mutadedModel #3/FI CYS 218
> color #3/FI:218 yellow
> swapaa #3/FI:220 ARG
Using Dunbrack library
mutadedModel #3/FI SER 220: phi -114.1, psi 147.4 trans
Applying ARG rotamer (chi angles: 54.1 81.4 -95.3 165.3) to mutadedModel #3/FI
ARG 220
> color #3/FI:220 yellow
> swapaa #3/FI:221 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 221: phi -132.9, psi 144.4 trans
Applying LEU rotamer (chi angles: -62.5 172.0) to mutadedModel #3/FI LEU 221
> color #3/FI:221 yellow
> swapaa #3/FI:222 CYS
Using Dunbrack library
mutadedModel #3/FI VAL 222: phi -75.7, psi 156.2 trans
Applying CYS rotamer (chi angles: -64.9) to mutadedModel #3/FI CYS 222
> color #3/FI:222 yellow
> swapaa #3/FI:223 PHE
Using Dunbrack library
mutadedModel #3/FI ARG 223: phi -89.9, psi -2.1 trans
Applying PHE rotamer (chi angles: -67.1 102.3) to mutadedModel #3/FI PHE 223
> color #3/FI:223 yellow
> swapaa #3/FI:224 CYS
Using Dunbrack library
mutadedModel #3/FI SER 224: phi -97.9, psi 28.6 trans
Applying CYS rotamer (chi angles: -177.2) to mutadedModel #3/FI CYS 224
> color #3/FI:224 yellow
> swapaa #3/FI:225 MET
Using Dunbrack library
mutadedModel #3/FI ASN 225: phi -148.1, psi 12.4 trans
Applying MET rotamer (chi angles: -134.1 -54.5 108.8) to mutadedModel #3/FI
MET 225
> color #3/FI:225 yellow
> swapaa #3/FI:227 PHE
Using Dunbrack library
mutadedModel #3/FI HIS 227: phi -70.1, psi -13.0 trans
Applying PHE rotamer (chi angles: -71.4 78.3) to mutadedModel #3/FI PHE 227
> color #3/FI:227 yellow
> swapaa #3/FI:231 ASP
Using Dunbrack library
mutadedModel #3/FI ALA 231: phi -84.3, psi -30.5 trans
Applying ASP rotamer (chi angles: -67.9 -19.5) to mutadedModel #3/FI ASP 231
> color #3/FI:231 yellow
> swapaa #3/FI:232 MET
Using Dunbrack library
mutadedModel #3/FI LEU 232: phi -72.6, psi -42.7 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/FI MET
232
> color #3/FI:232 yellow
> swapaa #3/FI:234 LEU
Using Dunbrack library
mutadedModel #3/FI PHE 234: phi -72.6, psi -38.6 trans
Applying LEU rotamer (chi angles: -68.3 173.0) to mutadedModel #3/FI LEU 234
> color #3/FI:234 yellow
> swapaa #3/FI:236 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 236: phi -82.2, psi -32.6 trans
Applying PHE rotamer (chi angles: -71.7 103.3) to mutadedModel #3/FI PHE 236
> color #3/FI:236 yellow
> swapaa #3/FI:238 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 238: phi -77.6, psi -29.2 trans
Applying ILE rotamer (chi angles: -66.7 169.1) to mutadedModel #3/FI ILE 238
> color #3/FI:238 yellow
> swapaa #3/FI:239 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 239: phi -75.4, psi -43.7 trans
Applying LEU rotamer (chi angles: -66.5 174.5) to mutadedModel #3/FI LEU 239
> color #3/FI:239 yellow
> swapaa #3/FI:241 TYR
Using Dunbrack library
mutadedModel #3/FI ILE 241: phi -82.0, psi -31.1 trans
Applying TYR rotamer (chi angles: -70.3 133.1) to mutadedModel #3/FI TYR 241
> color #3/FI:241 yellow
> swapaa #3/FI:242 VAL
Using Dunbrack library
mutadedModel #3/FI LEU 242: phi -71.0, psi -27.4 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/FI VAL 242
> color #3/FI:242 yellow
> swapaa #3/FI:243 VAL
Using Dunbrack library
mutadedModel #3/FI GLU 243: phi -62.2, psi -34.4 trans
Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 243
> color #3/FI:243 yellow
> swapaa #3/FI:247 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 247: phi -112.0, psi -27.7 trans
Applying PHE rotamer (chi angles: -64.2 103.3) to mutadedModel #3/FI PHE 247
> color #3/FI:247 yellow
> swapaa #3/FI:248 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 248: phi -117.7, psi -31.1 trans
Applying ILE rotamer (chi angles: -65.4 169.3) to mutadedModel #3/FI ILE 248
> color #3/FI:248 yellow
> swapaa #3/FI:249 ASN
Using Dunbrack library
mutadedModel #3/FI ILE 249: phi -96.8, psi 32.9 trans
Applying ASN rotamer (chi angles: -161.5 -52.3) to mutadedModel #3/FI ASN 249
> color #3/FI:249 yellow
> swapaa #3/FI:250 TRP
Using Dunbrack library
mutadedModel #3/FI GLY 250: phi -122.2, psi 87.3 trans
Applying TRP rotamer (chi angles: 60.5 167.2) to mutadedModel #3/FI TRP 250
> color #3/FI:250 yellow
> swapaa #3/FI:251 TYR
Using Dunbrack library
mutadedModel #3/FI ARG 251: phi -68.3, psi -57.7 trans
Applying TYR rotamer (chi angles: 69.3 87.8) to mutadedModel #3/FI TYR 251
> color #3/FI:251 yellow
> swapaa #3/FI:253 VAL
Using Dunbrack library
mutadedModel #3/FI ASP 253: phi -99.8, psi -53.1 trans
Applying VAL rotamer (chi angles: 70.6) to mutadedModel #3/FI VAL 253
> color #3/FI:253 yellow
> swapaa #3/FI:255 HIS
Using Dunbrack library
mutadedModel #3/FI PHE 255: phi -90.6, psi -173.3 trans
Applying HIS rotamer (chi angles: -64.8 -71.6) to mutadedModel #3/FI HIS 255
> color #3/FI:255 yellow
> swapaa #3/FI:256 GLU
Using Dunbrack library
mutadedModel #3/FI ASN 256: phi -77.3, psi -24.7 trans
Applying GLU rotamer (chi angles: 70.5 -84.2 17.3) to mutadedModel #3/FI GLU
256
> color #3/FI:256 yellow
> swapaa #3/FI:257 GLU
Using Dunbrack library
mutadedModel #3/FI THR 257: phi -79.7, psi -22.0 trans
Applying GLU rotamer (chi angles: -64.0 82.6 1.3) to mutadedModel #3/FI GLU
257
> color #3/FI:257 yellow
> swapaa #3/FI:258 SER
Using Dunbrack library
mutadedModel #3/FI ALA 258: phi -75.6, psi -10.3 trans
Applying SER rotamer (chi angles: -64.5) to mutadedModel #3/FI SER 258
> color #3/FI:258 yellow
> swapaa #3/FI:259 TRP
Using Dunbrack library
mutadedModel #3/FI PHE 259: phi -109.9, psi 12.9 trans
Applying TRP rotamer (chi angles: -65.1 103.4) to mutadedModel #3/FI TRP 259
> color #3/FI:259 yellow
> swapaa #3/FI:261 ILE
Using Dunbrack library
mutadedModel #3/FI ASN 261: phi -63.6, psi 177.1 trans
Applying ILE rotamer (chi angles: 59.4 85.1) to mutadedModel #3/FI ILE 261
> color #3/FI:261 yellow
> swapaa #3/FI:263 ASP
Using Dunbrack library
mutadedModel #3/FI ALA 263: phi -105.1, psi 111.3 trans
Applying ASP rotamer (chi angles: -177.3 -35.7) to mutadedModel #3/FI ASP 263
> color #3/FI:263 yellow
> swapaa #3/FI:264 THR
Using Dunbrack library
mutadedModel #3/FI ILE 264: phi -70.4, psi -19.9 trans
Applying THR rotamer (chi angles: 60.3) to mutadedModel #3/FI THR 264
> color #3/FI:264 yellow
> swapaa #3/FI:265 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 265: phi -101.1, psi -21.4 trans
Applying LEU rotamer (chi angles: -61.2 176.9) to mutadedModel #3/FI LEU 265
> color #3/FI:265 yellow
> swapaa #3/FI:266 LYS
Using Dunbrack library
mutadedModel #3/FI THR 266: phi -105.6, psi 127.0 trans
Applying LYS rotamer (chi angles: -177.7 178.5 -176.1 -64.2) to mutadedModel
#3/FI LYS 266
> color #3/FI:266 yellow
> swapaa #3/FI:267 THR
Using Dunbrack library
mutadedModel #3/FI ALA 267: phi -77.4, psi 143.3 trans
Applying THR rotamer (chi angles: 59.4) to mutadedModel #3/FI THR 267
> color #3/FI:267 yellow
> swapaa #3/FI:268 SER
Using Dunbrack library
mutadedModel #3/FI GLY 268: phi -35.5, psi 98.9 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/FI SER 268
> color #3/FI:268 yellow
> swapaa #3/FI:269 ASP
Using Dunbrack library
mutadedModel #3/FI ALA 269: phi 1.0, psi 112.0 trans
Applying ASP rotamer (chi angles: -173.5 81.5) to mutadedModel #3/FI ASP 269
> color #3/FI:269 yellow
> swapaa #3/FI:270 LYS
Using Dunbrack library
mutadedModel #3/FI ALA 270: phi -28.7, psi -15.0 trans
Applying LYS rotamer (chi angles: 69.2 -86.7 -174.9 -178.1) to mutadedModel
#3/FI LYS 270
> color #3/FI:270 yellow
> swapaa #3/FI:271 ILE
Using Dunbrack library
mutadedModel #3/FI THR 271: phi -136.8, psi 108.0 trans
Applying ILE rotamer (chi angles: -58.6 172.2) to mutadedModel #3/FI ILE 271
> color #3/FI:271 yellow
> swapaa #3/FI:272 LEU
Using Dunbrack library
mutadedModel #3/FI ILE 272: phi -93.8, psi 106.2 trans
mutadedModel #3/FI ILE 272 has 2 equal-value rotamers; choosing one
arbitrarily.
Applying LEU rotamer (chi angles: 61.3 80.6) to mutadedModel #3/FI LEU 272
> color #3/FI:272 yellow
> swapaa #3/FI:273 PRO
Using Dunbrack library
mutadedModel #3/FI VAL 273: phi -120.7, psi 143.1 trans
Applying PRO rotamer (chi angles: 29.2 -34.5) to mutadedModel #3/FI PRO 273
> color #3/FI:273 yellow
> swapaa #3/FI:274 GLU
Using Dunbrack library
mutadedModel #3/FI VAL 274: phi -78.3, psi 168.7 trans
Applying GLU rotamer (chi angles: -63.8 -66.6 -31.8) to mutadedModel #3/FI GLU
274
> color #3/FI:274 yellow
> swapaa #3/FI:275 TRP
Using Dunbrack library
mutadedModel #3/FI GLU 275: phi -57.9, psi -134.7 trans
Applying TRP rotamer (chi angles: -178.3 58.2) to mutadedModel #3/FI TRP 275
> color #3/FI:275 yellow
> swapaa #3/FI:276 PHE
Using Dunbrack library
mutadedModel #3/FI SER 276: phi 176.5, psi 21.4 trans
Applying PHE rotamer (chi angles: -178.6 77.3) to mutadedModel #3/FI PHE 276
> color #3/FI:276 yellow
> swapaa #3/FI:280 LEU
Using Dunbrack library
mutadedModel #3/FI PHE 280: phi -78.5, psi -55.9 trans
Applying LEU rotamer (chi angles: -68.2 172.9) to mutadedModel #3/FI LEU 280
> color #3/FI:280 yellow
> swapaa #3/FI:281 PHE
Using Dunbrack library
mutadedModel #3/FI TRP 281: phi -51.0, psi -70.1 trans
Applying PHE rotamer (chi angles: -73.7 -16.1) to mutadedModel #3/FI PHE 281
> color #3/FI:281 yellow
> swapaa #3/FI:283 PHE
Using Dunbrack library
mutadedModel #3/FI TYR 283: phi -73.4, psi -45.4 trans
Applying PHE rotamer (chi angles: -73.2 131.8) to mutadedModel #3/FI PHE 283
> color #3/FI:283 yellow
> swapaa #3/FI:284 LEU
Using Dunbrack library
mutadedModel #3/FI GLU 284: phi -56.0, psi -27.1 trans
Applying LEU rotamer (chi angles: -68.4 173.8) to mutadedModel #3/FI LEU 284
> color #3/FI:284 yellow
> swapaa #3/FI:289 ASP
Using Dunbrack library
mutadedModel #3/FI THR 289: phi -95.6, psi 133.3 trans
Applying ASP rotamer (chi angles: -175.8 -13.3) to mutadedModel #3/FI ASP 289
> color #3/FI:289 yellow
> swapaa #3/FI:290 LYS
Using Dunbrack library
mutadedModel #3/FI SER 290: phi -62.4, psi -31.8 trans
Applying LYS rotamer (chi angles: -62.9 -72.4 100.3 78.3) to mutadedModel
#3/FI LYS 290
> color #3/FI:290 yellow
> swapaa #3/FI:292 THR
Using Dunbrack library
mutadedModel #3/FI PRO 292: phi -55.7, psi -43.0 trans
Applying THR rotamer (chi angles: 58.7) to mutadedModel #3/FI THR 292
> color #3/FI:292 yellow
> swapaa #3/FI:295 LEU
Using Dunbrack library
mutadedModel #3/FI GLN 295: phi -80.7, psi -37.2 trans
Applying LEU rotamer (chi angles: -177.5 59.5) to mutadedModel #3/FI LEU 295
> color #3/FI:295 yellow
> swapaa #3/FI:296 LEU
Using Dunbrack library
mutadedModel #3/FI HIS 296: phi -69.1, psi -39.8 trans
Applying LEU rotamer (chi angles: -177.4 58.8) to mutadedModel #3/FI LEU 296
> color #3/FI:296 yellow
> swapaa #3/FI:297 MET
Using Dunbrack library
mutadedModel #3/FI LYS 297: phi -66.2, psi -35.1 trans
Applying MET rotamer (chi angles: -179.2 -179.3 71.4) to mutadedModel #3/FI
MET 297
> color #3/FI:297 yellow
> swapaa #3/FI:303 SER
Using Dunbrack library
mutadedModel #3/FI THR 303: phi -77.2, psi -32.3 trans
Applying SER rotamer (chi angles: 65.9) to mutadedModel #3/FI SER 303
> color #3/FI:303 yellow
> swapaa #3/FI:307 PHE
Using Dunbrack library
mutadedModel #3/FI ARG 307: phi -66.2, psi -25.4 trans
Applying PHE rotamer (chi angles: 72.6 143.7) to mutadedModel #3/FI PHE 307
> color #3/FI:307 yellow
> swapaa #3/FI:308 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 308: phi -62.1, psi -40.6 trans
Applying ILE rotamer (chi angles: -68.1 168.5) to mutadedModel #3/FI ILE 308
> color #3/FI:308 yellow
> swapaa #3/FI:310 ASN
Using Dunbrack library
mutadedModel #3/FI ASP 310: phi -114.2, psi 64.1 trans
Applying ASN rotamer (chi angles: -65.4 -60.4) to mutadedModel #3/FI ASN 310
> color #3/FI:310 yellow
> swapaa #3/FI:311 CYS
Using Dunbrack library
mutadedModel #3/FI THR 311: phi -104.9, psi 118.0 trans
Applying CYS rotamer (chi angles: -63.0) to mutadedModel #3/FI CYS 311
> color #3/FI:311 yellow
> swapaa #3/FI:312 ILE
Using Dunbrack library
mutadedModel #3/FI VAL 312: phi -118.6, psi 132.5 trans
Applying ILE rotamer (chi angles: -60.7 170.4) to mutadedModel #3/FI ILE 312
> color #3/FI:312 yellow
> swapaa #3/FI:313 LEU
Using Dunbrack library
mutadedModel #3/FI TRP 313: phi 7.5, psi 74.9 trans
Applying LEU rotamer (chi angles: -179.8 62.5) to mutadedModel #3/FI LEU 313
> color #3/FI:313 yellow
> swapaa #3/FI:314 TRP
Using Dunbrack library
mutadedModel #3/FI LEU 314: phi -58.2, psi none trans
Applying TRP rotamer (chi angles: -67.4 100.3) to mutadedModel #3/FI TRP 314
> color #3/FI:314 yellow
> swapaa #3/FI:318 CYS
Using Dunbrack library
mutadedModel #3/FI PRO 318: phi none, psi 11.1 trans
Applying CYS rotamer (chi angles: -64.3) to mutadedModel #3/FI CYS 318
> color #3/FI:318 yellow
> swapaa #3/FI:319 ARG
Using Dunbrack library
mutadedModel #3/FI TRP 319: phi 50.2, psi -171.7 cis
Applying ARG rotamer (chi angles: -176.3 177.1 177.4 86.7) to mutadedModel
#3/FI ARG 319
> color #3/FI:319 yellow
> swapaa #3/FI:320 SER
Using Dunbrack library
mutadedModel #3/FI THR 320: phi -44.4, psi -17.9 cis
Applying SER rotamer (chi angles: -65.8) to mutadedModel #3/FI SER 320
> color #3/FI:320 yellow
> swapaa #3/FI:321 SER
Using Dunbrack library
mutadedModel #3/FI PHE 321: phi -129.6, psi 22.6 trans
Applying SER rotamer (chi angles: -61.6) to mutadedModel #3/FI SER 321
> color #3/FI:321 yellow
> swapaa #3/FI:322 LEU
Using Dunbrack library
mutadedModel #3/FI SER 322: phi -125.5, psi 160.5 trans
Applying LEU rotamer (chi angles: -60.1 171.7) to mutadedModel #3/FI LEU 322
> color #3/FI:322 yellow
> swapaa #3/FI:323 LEU
Using Dunbrack library
mutadedModel #3/FI HIS 323: phi -106.8, psi 157.2 trans
Applying LEU rotamer (chi angles: -73.2 -57.6) to mutadedModel #3/FI LEU 323
> color #3/FI:323 yellow
> swapaa #3/FI:324 TRP
Using Dunbrack library
mutadedModel #3/FI SER 324: phi -134.8, psi 130.8 trans
Applying TRP rotamer (chi angles: -65.3 -92.6) to mutadedModel #3/FI TRP 324
> color #3/FI:324 yellow
> swapaa #3/FI:325 PHE
Using Dunbrack library
mutadedModel #3/FI LEU 325: phi -85.1, psi -14.8 trans
Applying PHE rotamer (chi angles: -67.5 102.8) to mutadedModel #3/FI PHE 325
> color #3/FI:325 yellow
> swapaa #3/FI:326 THR
Using Dunbrack library
mutadedModel #3/FI LEU 326: phi -82.5, psi -32.2 trans
Applying THR rotamer (chi angles: -60.1) to mutadedModel #3/FI THR 326
> color #3/FI:326 yellow
> swapaa #3/FI:327 TYR
Using Dunbrack library
mutadedModel #3/FI LEU 327: phi -77.7, psi -38.0 trans
Applying TYR rotamer (chi angles: -70.4 -16.4) to mutadedModel #3/FI TYR 327
> color #3/FI:327 yellow
> swapaa #3/FI:328 SER
Using Dunbrack library
mutadedModel #3/FI TRP 328: phi -73.0, psi -24.5 trans
Applying SER rotamer (chi angles: 68.0) to mutadedModel #3/FI SER 328
> color #3/FI:328 yellow
> swapaa #3/FI:329 LEU
Using Dunbrack library
mutadedModel #3/FI PHE 329: phi -84.8, psi -20.9 trans
Applying LEU rotamer (chi angles: -64.9 175.2) to mutadedModel #3/FI LEU 329
> color #3/FI:329 yellow
> swapaa #3/FI:331 LEU
Using Dunbrack library
mutadedModel #3/FI TRP 331: phi -72.1, psi -30.9 trans
Applying LEU rotamer (chi angles: -88.6 -63.4) to mutadedModel #3/FI LEU 331
> color #3/FI:331 yellow
> swapaa #3/FI:332 PHE
Using Dunbrack library
mutadedModel #3/FI GLU 332: phi -67.5, psi -38.1 trans
Applying PHE rotamer (chi angles: 74.1 1.2) to mutadedModel #3/FI PHE 332
> color #3/FI:332 yellow
> swapaa #3/FI:333 TYR
Using Dunbrack library
mutadedModel #3/FI LEU 333: phi -65.5, psi -42.6 trans
Applying TYR rotamer (chi angles: -175.9 131.2) to mutadedModel #3/FI TYR 333
> color #3/FI:333 yellow
> swapaa #3/FI:334 SER
Using Dunbrack library
mutadedModel #3/FI ILE 334: phi -57.4, psi -43.8 trans
Applying SER rotamer (chi angles: 65.0) to mutadedModel #3/FI SER 334
> color #3/FI:334 yellow
> swapaa #3/FI:335 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 335: phi -65.2, psi -48.3 trans
Applying ILE rotamer (chi angles: -62.6 -60.5) to mutadedModel #3/FI ILE 335
> color #3/FI:335 yellow
> swapaa #3/FI:337 MET
Using Dunbrack library
mutadedModel #3/FI TYR 337: phi -74.5, psi -33.4 trans
Applying MET rotamer (chi angles: -171.0 65.1 -168.9) to mutadedModel #3/FI
MET 337
> color #3/FI:337 yellow
> swapaa #3/FI:338 SER
Using Dunbrack library
mutadedModel #3/FI CYS 338: phi -74.1, psi -26.6 trans
Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/FI SER 338
> color #3/FI:338 yellow
> swapaa #3/FI:339 GLY
Using Dunbrack library
Swapping mutadedModel #3/FI VAL 339 to GLY
> color #3/FI:339 yellow
> swapaa #3/FI:340 PHE
Using Dunbrack library
mutadedModel #3/FI LYS 340: phi -71.3, psi -34.9 trans
Applying PHE rotamer (chi angles: -171.8 73.8) to mutadedModel #3/FI PHE 340
> color #3/FI:340 yellow
> swapaa #3/FI:341 LEU
Using Dunbrack library
mutadedModel #3/FI ASN 341: phi -66.9, psi -18.5 trans
Applying LEU rotamer (chi angles: -88.1 -64.0) to mutadedModel #3/FI LEU 341
> color #3/FI:341 yellow
> swapaa #3/FI:343 LEU
Using Dunbrack library
mutadedModel #3/FI GLY 343: phi -66.4, psi -40.0 trans
Applying LEU rotamer (chi angles: -175.1 153.0) to mutadedModel #3/FI LEU 343
> color #3/FI:343 yellow
> swapaa #3/FI:344 TYR
Using Dunbrack library
mutadedModel #3/FI ARG 344: phi -79.2, psi -35.6 trans
Applying TYR rotamer (chi angles: -176.7 75.8) to mutadedModel #3/FI TYR 344
> color #3/FI:344 yellow
> swapaa #3/FI:345 VAL
Using Dunbrack library
mutadedModel #3/FI ASN 345: phi -76.3, psi 1.0 trans
Applying VAL rotamer (chi angles: 172.6) to mutadedModel #3/FI VAL 345
> color #3/FI:345 yellow
> swapaa #3/FI:346 ILE
Using Dunbrack library
mutadedModel #3/FI ALA 346: phi -82.7, psi -14.6 trans
Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/FI ILE 346
> color #3/FI:346 yellow
> swapaa #3/FI:347 LEU
Using Dunbrack library
mutadedModel #3/FI GLN 347: phi -81.2, psi -5.4 trans
Applying LEU rotamer (chi angles: -64.5 175.1) to mutadedModel #3/FI LEU 347
> color #3/FI:347 yellow
> swapaa #3/FI:348 ALA
Using Dunbrack library
Swapping mutadedModel #3/FI ARG 348 to ALA
> color #3/FI:348 yellow
> swapaa #3/FI:349 TYR
Using Dunbrack library
mutadedModel #3/FI VAL 349: phi -74.1, psi -59.4 trans
Applying TYR rotamer (chi angles: 178.7 78.4) to mutadedModel #3/FI TYR 349
> color #3/FI:349 yellow
> swapaa #3/FI:350 PRO
Using Dunbrack library
mutadedModel #3/FI ASN 350: phi -76.3, psi 76.7 trans
Applying PRO rotamer (chi angles: 31.0 -35.4) to mutadedModel #3/FI PRO 350
> color #3/FI:350 yellow
> swapaa #3/FI:351 ILE
Using Dunbrack library
mutadedModel #3/FI LEU 351: phi -78.1, psi 93.8 trans
Applying ILE rotamer (chi angles: -167.6 67.2) to mutadedModel #3/FI ILE 351
> color #3/FI:351 yellow
> swapaa #3/FI:352 TRP
Using Dunbrack library
mutadedModel #3/FI SER 352: phi -146.8, psi -127.9 trans
Applying TRP rotamer (chi angles: -177.7 26.0) to mutadedModel #3/FI TRP 352
> color #3/FI:352 yellow
> swapaa #3/FI:353 MET
Using Dunbrack library
mutadedModel #3/FI HIS 353: phi -70.1, psi -125.1 trans
Applying MET rotamer (chi angles: -174.5 66.3 -170.7) to mutadedModel #3/FI
MET 353
> color #3/FI:353 yellow
> swapaa #3/FI:354 GLU
Using Dunbrack library
mutadedModel #3/FI PRO 354: phi -33.9, psi -19.0 trans
Applying GLU rotamer (chi angles: -177.6 65.6 20.8) to mutadedModel #3/FI GLU
354
> color #3/FI:354 yellow
> swapaa #3/FI:356 GLN
Using Dunbrack library
mutadedModel #3/FI ARG 356: phi -66.2, psi -33.8 trans
Applying GLN rotamer (chi angles: -174.6 175.4 95.3) to mutadedModel #3/FI GLN
356
> color #3/FI:356 yellow
> swapaa #3/FI:357 PHE
Using Dunbrack library
mutadedModel #3/FI GLN 357: phi -78.2, psi -31.5 trans
Applying PHE rotamer (chi angles: -71.7 44.7) to mutadedModel #3/FI PHE 357
> color #3/FI:357 yellow
> swapaa #3/FI:358 TRP
Using Dunbrack library
mutadedModel #3/FI VAL 358: phi -84.4, psi -21.6 trans
Applying TRP rotamer (chi angles: -177.2 -99.4) to mutadedModel #3/FI TRP 358
> color #3/FI:358 yellow
> swapaa #3/FI:359 VAL
Using Dunbrack library
mutadedModel #3/FI LEU 359: phi -63.9, psi -40.0 trans
Applying VAL rotamer (chi angles: 171.5) to mutadedModel #3/FI VAL 359
> color #3/FI:359 yellow
> swapaa #3/FI:360 LEU
Using Dunbrack library
mutadedModel #3/FI ARG 360: phi -59.7, psi -22.3 trans
Applying LEU rotamer (chi angles: -67.7 173.8) to mutadedModel #3/FI LEU 360
> color #3/FI:360 yellow
> swapaa #3/FI:361 LEU
Using Dunbrack library
mutadedModel #3/FI PHE 361: phi -81.1, psi -36.8 trans
Applying LEU rotamer (chi angles: -175.1 154.1) to mutadedModel #3/FI LEU 361
> color #3/FI:361 yellow
> swapaa #3/FI:362 LEU
Using Dunbrack library
mutadedModel #3/FI TYR 362: phi -73.4, psi -44.6 trans
Applying LEU rotamer (chi angles: -89.0 -62.2) to mutadedModel #3/FI LEU 362
> color #3/FI:362 yellow
> swapaa #3/FI:363 PHE
Using Dunbrack library
mutadedModel #3/FI PRO 363: phi -60.9, psi -39.7 trans
Applying PHE rotamer (chi angles: -178.0 133.3) to mutadedModel #3/FI PHE 363
> color #3/FI:363 yellow
> swapaa #3/FI:364 MET
Using Dunbrack library
mutadedModel #3/FI GLN 364: phi -72.1, psi -27.5 trans
Applying MET rotamer (chi angles: -65.7 -60.0 97.9) to mutadedModel #3/FI MET
364
> color #3/FI:364 yellow
> swapaa #3/FI:365 LEU
Using Dunbrack library
mutadedModel #3/FI GLN 365: phi -77.1, psi -38.3 trans
Applying LEU rotamer (chi angles: -174.4 -78.5) to mutadedModel #3/FI LEU 365
> color #3/FI:365 yellow
> swapaa #3/FI:366 VAL
Using Dunbrack library
mutadedModel #3/FI GLN 366: phi -64.6, psi -35.0 trans
Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 366
> color #3/FI:366 yellow
> swapaa #3/FI:367 VAL
Using Dunbrack library
mutadedModel #3/FI GLY 367: phi -61.4, psi -27.5 trans
Applying VAL rotamer (chi angles: 172.1) to mutadedModel #3/FI VAL 367
> color #3/FI:367 yellow
> swapaa #3/FI:368 CYS
Using Dunbrack library
mutadedModel #3/FI LEU 368: phi -87.1, psi -23.6 trans
Applying CYS rotamer (chi angles: -64.6) to mutadedModel #3/FI CYS 368
> color #3/FI:368 yellow
> swapaa #3/FI:369 ARG
Using Dunbrack library
mutadedModel #3/FI LEU 369: phi -107.1, psi 3.4 trans
Applying ARG rotamer (chi angles: -67.1 -86.2 67.9 -109.4) to mutadedModel
#3/FI ARG 369
> color #3/FI:369 yellow
> swapaa #3/FI:370 LEU
Using Dunbrack library
mutadedModel #3/FI THR 370: phi -131.3, psi -30.4 trans
Applying LEU rotamer (chi angles: -61.8 175.2) to mutadedModel #3/FI LEU 370
> color #3/FI:370 yellow
> swapaa #3/FI:371 ASP
Using Dunbrack library
mutadedModel #3/FI SER 371: phi -126.5, psi 2.9 trans
Applying ASP rotamer (chi angles: 63.2 55.9) to mutadedModel #3/FI ASP 371
> color #3/FI:371 yellow
> color #3/FI:372 cyan
> color #3/FI:373 cyan
> color #3/FI:374 cyan
> color #3/FI:375 cyan
> select #3/GU
1666 atoms, 1700 bonds, 203 residues, 1 model selected
> bond #3/GU:16@C #3/GU:17@N reasonable false
Created 0 bonds
> bond #3/GU:17@C #3/GU:18@N reasonable false
Created 0 bonds
> bond #3/GU:18@C #3/GU:19@N reasonable false
Created 1 bond
> bond #3/GU:21@C #3/GU:22@N reasonable false
Created 0 bonds
> bond #3/GU:22@C #3/GU:23@N reasonable false
Created 0 bonds
> bond #3/GU:23@C #3/GU:24@N reasonable false
Created 0 bonds
> bond #3/GU:24@C #3/GU:25@N reasonable false
Created 0 bonds
> bond #3/GU:25@C #3/GU:26@N reasonable false
Created 0 bonds
> bond #3/GU:26@C #3/GU:27@N reasonable false
Created 0 bonds
> bond #3/GU:27@C #3/GU:28@N reasonable false
Created 0 bonds
> bond #3/GU:28@C #3/GU:29@N reasonable false
Created 0 bonds
> bond #3/GU:29@C #3/GU:30@N reasonable false
Created 0 bonds
> bond #3/GU:30@C #3/GU:31@N reasonable false
Created 1 bond
> bond #3/GU:31@C #3/GU:32@N reasonable false
Created 0 bonds
> bond #3/GU:32@C #3/GU:33@N reasonable false
Created 0 bonds
> bond #3/GU:33@C #3/GU:34@N reasonable false
Created 0 bonds
> bond #3/GU:34@C #3/GU:35@N reasonable false
Created 1 bond
> bond #3/GU:116@C #3/GU:117@N reasonable false
Created 0 bonds
> bond #3/GU:117@C #3/GU:118@N reasonable false
Created 0 bonds
> bond #3/GU:118@C #3/GU:119@N reasonable false
Created 0 bonds
> bond #3/GU:119@C #3/GU:120@N reasonable false
Created 0 bonds
> bond #3/GU:120@C #3/GU:121@N reasonable false
Created 0 bonds
> bond #3/GU:121@C #3/GU:122@N reasonable false
Created 0 bonds
> bond #3/GU:122@C #3/GU:123@N reasonable false
Created 0 bonds
> bond #3/GU:123@C #3/GU:124@N reasonable false
Created 0 bonds
> bond #3/GU:124@C #3/GU:125@N reasonable false
Created 1 bond
> bond #3/GU:38@C #3/GU:39@N reasonable false
Created 0 bonds
> bond #3/GU:39@C #3/GU:40@N reasonable false
Created 0 bonds
> bond #3/GU:40@C #3/GU:41@N reasonable false
Created 0 bonds
> bond #3/GU:41@C #3/GU:42@N reasonable false
Created 0 bonds
> bond #3/GU:42@C #3/GU:43@N reasonable false
Created 0 bonds
> bond #3/GU:43@C #3/GU:44@N reasonable false
Created 0 bonds
> bond #3/GU:44@C #3/GU:45@N reasonable false
Created 0 bonds
> bond #3/GU:45@C #3/GU:46@N reasonable false
Created 0 bonds
> bond #3/GU:46@C #3/GU:47@N reasonable false
Created 0 bonds
> bond #3/GU:47@C #3/GU:48@N reasonable false
Created 0 bonds
> bond #3/GU:48@C #3/GU:49@N reasonable false
Created 0 bonds
> bond #3/GU:49@C #3/GU:50@N reasonable false
Created 0 bonds
> bond #3/GU:50@C #3/GU:51@N reasonable false
Created 0 bonds
> bond #3/GU:51@C #3/GU:52@N reasonable false
Created 0 bonds
> bond #3/GU:52@C #3/GU:53@N reasonable false
Created 0 bonds
> bond #3/GU:53@C #3/GU:54@N reasonable false
Created 0 bonds
> bond #3/GU:54@C #3/GU:55@N reasonable false
Created 0 bonds
> bond #3/GU:55@C #3/GU:56@N reasonable false
Created 0 bonds
> bond #3/GU:56@C #3/GU:57@N reasonable false
Created 0 bonds
> bond #3/GU:57@C #3/GU:58@N reasonable false
Created 0 bonds
> bond #3/GU:58@C #3/GU:59@N reasonable false
Created 0 bonds
> bond #3/GU:59@C #3/GU:60@N reasonable false
Created 0 bonds
> bond #3/GU:60@C #3/GU:61@N reasonable false
Created 0 bonds
> bond #3/GU:61@C #3/GU:62@N reasonable false
Created 0 bonds
> bond #3/GU:62@C #3/GU:63@N reasonable false
Created 0 bonds
> bond #3/GU:63@C #3/GU:64@N reasonable false
Created 0 bonds
> bond #3/GU:64@C #3/GU:65@N reasonable false
Created 0 bonds
> bond #3/GU:65@C #3/GU:66@N reasonable false
Created 0 bonds
> bond #3/GU:66@C #3/GU:67@N reasonable false
Created 0 bonds
> bond #3/GU:67@C #3/GU:68@N reasonable false
Created 1 bond
> bond #3/GU:19@C #3/GU:20@N reasonable false
Created 0 bonds
> bond #3/GU:20@C #3/GU:21@N reasonable false
Created 1 bond
> bond #3/GU:36@C #3/GU:37@N reasonable false
Created 0 bonds
> bond #3/GU:37@C #3/GU:38@N reasonable false
Created 1 bond
> bond #3/GU:14@C #3/GU:15@N reasonable false
Created 0 bonds
> bond #3/GU:15@C #3/GU:16@N reasonable false
Created 1 bond
> bond #3/GU:125@C #3/GU:126@N reasonable false
Created 0 bonds
> bond #3/GU:126@C #3/GU:127@N reasonable false
Created 1 bond
> bond #3/GU:35@C #3/GU:36@N reasonable false
Created 1 bond
> bond #3/GU:127@C #3/GU:128@N reasonable false
Created 0 bonds
> bond #3/GU:128@C #3/GU:129@N reasonable false
Created 0 bonds
> bond #3/GU:129@C #3/GU:130@N reasonable false
Created 0 bonds
> bond #3/GU:130@C #3/GU:131@N reasonable false
Created 0 bonds
> bond #3/GU:131@C #3/GU:132@N reasonable false
Created 0 bonds
> bond #3/GU:132@C #3/GU:133@N reasonable false
Created 0 bonds
> bond #3/GU:133@C #3/GU:134@N reasonable false
Created 0 bonds
> bond #3/GU:134@C #3/GU:135@N reasonable false
Created 0 bonds
> bond #3/GU:135@C #3/GU:136@N reasonable false
Created 0 bonds
> bond #3/GU:136@C #3/GU:137@N reasonable false
Created 0 bonds
> bond #3/GU:137@C #3/GU:138@N reasonable false
Created 0 bonds
> bond #3/GU:138@C #3/GU:139@N reasonable false
Created 0 bonds
> bond #3/GU:139@C #3/GU:140@N reasonable false
Created 0 bonds
> bond #3/GU:140@C #3/GU:141@N reasonable false
Created 0 bonds
> bond #3/GU:141@C #3/GU:142@N reasonable false
Created 0 bonds
> bond #3/GU:142@C #3/GU:143@N reasonable false
Created 0 bonds
> bond #3/GU:143@C #3/GU:144@N reasonable false
Created 0 bonds
> bond #3/GU:144@C #3/GU:145@N reasonable false
Created 0 bonds
> bond #3/GU:145@C #3/GU:146@N reasonable false
Created 0 bonds
> bond #3/GU:146@C #3/GU:147@N reasonable false
Created 0 bonds
> bond #3/GU:147@C #3/GU:148@N reasonable false
Created 0 bonds
> bond #3/GU:148@C #3/GU:149@N reasonable false
Created 0 bonds
> bond #3/GU:149@C #3/GU:150@N reasonable false
Created 0 bonds
> bond #3/GU:150@C #3/GU:151@N reasonable false
Created 0 bonds
> bond #3/GU:151@C #3/GU:152@N reasonable false
Created 0 bonds
> bond #3/GU:152@C #3/GU:153@N reasonable false
Created 0 bonds
> bond #3/GU:153@C #3/GU:154@N reasonable false
Created 0 bonds
> bond #3/GU:154@C #3/GU:155@N reasonable false
Created 0 bonds
> bond #3/GU:155@C #3/GU:156@N reasonable false
Created 0 bonds
> bond #3/GU:156@C #3/GU:157@N reasonable false
Created 0 bonds
> bond #3/GU:157@C #3/GU:158@N reasonable false
Created 0 bonds
> bond #3/GU:158@C #3/GU:159@N reasonable false
Created 0 bonds
> bond #3/GU:159@C #3/GU:160@N reasonable false
Created 0 bonds
> bond #3/GU:160@C #3/GU:161@N reasonable false
Created 0 bonds
> bond #3/GU:161@C #3/GU:162@N reasonable false
Created 0 bonds
> bond #3/GU:162@C #3/GU:163@N reasonable false
Created 0 bonds
> bond #3/GU:163@C #3/GU:164@N reasonable false
Created 0 bonds
> bond #3/GU:164@C #3/GU:165@N reasonable false
Created 0 bonds
> bond #3/GU:165@C #3/GU:166@N reasonable false
Created 0 bonds
> bond #3/GU:166@C #3/GU:167@N reasonable false
Created 0 bonds
> bond #3/GU:167@C #3/GU:168@N reasonable false
Created 0 bonds
> bond #3/GU:168@C #3/GU:169@N reasonable false
Created 0 bonds
> bond #3/GU:169@C #3/GU:170@N reasonable false
Created 0 bonds
> bond #3/GU:170@C #3/GU:171@N reasonable false
Created 0 bonds
> bond #3/GU:171@C #3/GU:172@N reasonable false
Created 0 bonds
> bond #3/GU:172@C #3/GU:173@N reasonable false
Created 0 bonds
> bond #3/GU:173@C #3/GU:174@N reasonable false
Created 0 bonds
> bond #3/GU:174@C #3/GU:175@N reasonable false
Created 0 bonds
> bond #3/GU:175@C #3/GU:176@N reasonable false
Created 0 bonds
> bond #3/GU:176@C #3/GU:177@N reasonable false
Created 0 bonds
> bond #3/GU:177@C #3/GU:178@N reasonable false
Created 0 bonds
> bond #3/GU:178@C #3/GU:179@N reasonable false
Created 0 bonds
> bond #3/GU:179@C #3/GU:180@N reasonable false
Created 0 bonds
> bond #3/GU:180@C #3/GU:181@N reasonable false
Created 0 bonds
> bond #3/GU:181@C #3/GU:182@N reasonable false
Created 0 bonds
> bond #3/GU:182@C #3/GU:183@N reasonable false
Created 0 bonds
> bond #3/GU:183@C #3/GU:184@N reasonable false
Created 0 bonds
> bond #3/GU:184@C #3/GU:185@N reasonable false
Created 0 bonds
> bond #3/GU:185@C #3/GU:186@N reasonable false
Created 0 bonds
> bond #3/GU:186@C #3/GU:187@N reasonable false
Created 0 bonds
> bond #3/GU:187@C #3/GU:188@N reasonable false
Created 0 bonds
> bond #3/GU:188@C #3/GU:189@N reasonable false
Created 0 bonds
> bond #3/GU:189@C #3/GU:190@N reasonable false
Created 0 bonds
> bond #3/GU:190@C #3/GU:191@N reasonable false
Created 0 bonds
> bond #3/GU:191@C #3/GU:192@N reasonable false
Created 1 bond
> bond #3/GU:68@C #3/GU:69@N reasonable false
Created 0 bonds
> bond #3/GU:69@C #3/GU:70@N reasonable false
Created 0 bonds
> bond #3/GU:70@C #3/GU:71@N reasonable false
Created 0 bonds
> bond #3/GU:71@C #3/GU:72@N reasonable false
Created 0 bonds
> bond #3/GU:72@C #3/GU:73@N reasonable false
Created 0 bonds
> bond #3/GU:73@C #3/GU:74@N reasonable false
Created 0 bonds
> bond #3/GU:74@C #3/GU:75@N reasonable false
Created 0 bonds
> bond #3/GU:75@C #3/GU:76@N reasonable false
Created 0 bonds
> bond #3/GU:76@C #3/GU:77@N reasonable false
Created 0 bonds
> bond #3/GU:77@C #3/GU:78@N reasonable false
Created 0 bonds
> bond #3/GU:78@C #3/GU:79@N reasonable false
Created 0 bonds
> bond #3/GU:79@C #3/GU:80@N reasonable false
Created 0 bonds
> bond #3/GU:80@C #3/GU:81@N reasonable false
Created 0 bonds
> bond #3/GU:81@C #3/GU:82@N reasonable false
Created 0 bonds
> bond #3/GU:82@C #3/GU:83@N reasonable false
Created 0 bonds
> bond #3/GU:83@C #3/GU:84@N reasonable false
Created 0 bonds
> bond #3/GU:84@C #3/GU:85@N reasonable false
Created 0 bonds
> bond #3/GU:85@C #3/GU:86@N reasonable false
Created 0 bonds
> bond #3/GU:86@C #3/GU:87@N reasonable false
Created 0 bonds
> bond #3/GU:87@C #3/GU:88@N reasonable false
Created 0 bonds
> bond #3/GU:88@C #3/GU:89@N reasonable false
Created 0 bonds
> bond #3/GU:89@C #3/GU:90@N reasonable false
Created 0 bonds
> bond #3/GU:90@C #3/GU:91@N reasonable false
Created 0 bonds
> bond #3/GU:91@C #3/GU:92@N reasonable false
Created 0 bonds
> bond #3/GU:92@C #3/GU:93@N reasonable false
Created 0 bonds
> bond #3/GU:93@C #3/GU:94@N reasonable false
Created 0 bonds
> bond #3/GU:94@C #3/GU:95@N reasonable false
Created 0 bonds
> bond #3/GU:95@C #3/GU:96@N reasonable false
Created 0 bonds
> bond #3/GU:96@C #3/GU:97@N reasonable false
Created 0 bonds
> bond #3/GU:97@C #3/GU:98@N reasonable false
Created 0 bonds
> bond #3/GU:98@C #3/GU:99@N reasonable false
Created 0 bonds
> bond #3/GU:99@C #3/GU:100@N reasonable false
Created 0 bonds
> bond #3/GU:100@C #3/GU:101@N reasonable false
Created 0 bonds
> bond #3/GU:101@C #3/GU:102@N reasonable false
Created 0 bonds
> bond #3/GU:102@C #3/GU:103@N reasonable false
Created 0 bonds
> bond #3/GU:103@C #3/GU:104@N reasonable false
Created 0 bonds
> bond #3/GU:104@C #3/GU:105@N reasonable false
Created 0 bonds
> bond #3/GU:105@C #3/GU:106@N reasonable false
Created 0 bonds
> bond #3/GU:106@C #3/GU:107@N reasonable false
Created 0 bonds
> bond #3/GU:107@C #3/GU:108@N reasonable false
Created 0 bonds
> bond #3/GU:108@C #3/GU:109@N reasonable false
Created 0 bonds
> bond #3/GU:109@C #3/GU:110@N reasonable false
Created 0 bonds
> bond #3/GU:110@C #3/GU:111@N reasonable false
Created 0 bonds
> bond #3/GU:111@C #3/GU:112@N reasonable false
Created 0 bonds
> bond #3/GU:112@C #3/GU:113@N reasonable false
Created 0 bonds
> bond #3/GU:113@C #3/GU:114@N reasonable false
Created 0 bonds
> bond #3/GU:114@C #3/GU:115@N reasonable false
Created 0 bonds
> bond #3/GU:115@C #3/GU:116@N reasonable false
Created 1 bond
> bond #3/GU:10@C #3/GU:11@N reasonable false
Created 0 bonds
> bond #3/GU:11@C #3/GU:12@N reasonable false
Created 0 bonds
> bond #3/GU:12@C #3/GU:13@N reasonable false
Created 0 bonds
> bond #3/GU:13@C #3/GU:14@N reasonable false
Created 1 bond
> bond #3/GU:192@C #3/GU:193@N reasonable false
Created 0 bonds
> bond #3/GU:193@C #3/GU:194@N reasonable false
Created 0 bonds
> bond #3/GU:194@C #3/GU:195@N reasonable false
Created 0 bonds
> bond #3/GU:195@C #3/GU:196@N reasonable false
Created 0 bonds
> bond #3/GU:196@C #3/GU:197@N reasonable false
Created 0 bonds
> bond #3/GU:197@C #3/GU:198@N reasonable false
Created 0 bonds
> bond #3/GU:198@C #3/GU:199@N reasonable false
Created 0 bonds
> bond #3/GU:199@C #3/GU:200@N reasonable false
Created 0 bonds
> bond #3/GU:200@C #3/GU:201@N reasonable false
Created 0 bonds
> bond #3/GU:201@C #3/GU:202@N reasonable false
Created 0 bonds
> bond #3/GU:202@C #3/GU:203@N reasonable false
Created 0 bonds
> bond #3/GU:1@C #3/GU:2@N reasonable false
Created 0 bonds
> bond #3/GU:2@C #3/GU:3@N reasonable false
Created 0 bonds
> bond #3/GU:3@C #3/GU:4@N reasonable false
Created 0 bonds
> bond #3/GU:4@C #3/GU:5@N reasonable false
Created 0 bonds
> bond #3/GU:5@C #3/GU:6@N reasonable false
Created 0 bonds
> bond #3/GU:6@C #3/GU:7@N reasonable false
Created 0 bonds
> bond #3/GU:7@C #3/GU:8@N reasonable false
Created 0 bonds
> bond #3/GU:8@C #3/GU:9@N reasonable false
Created 0 bonds
> bond #3/GU:9@C #3/GU:10@N reasonable false
Created 1 bond
> swapaa #3/GU:1 MET
Using Dunbrack library
mutadedModel #3/GU GLY 1: phi none, psi 14.0 trans
Applying MET rotamer (chi angles: -67.4 178.0 70.4) to mutadedModel #3/GU MET
1
> color #3/GU:1 yellow
> swapaa #3/GU:2 MET
Using Dunbrack library
mutadedModel #3/GU ALA 2: phi -83.8, psi -24.9 trans
Applying MET rotamer (chi angles: -66.8 179.4 -177.2) to mutadedModel #3/GU
MET 2
> color #3/GU:2 yellow
> swapaa #3/GU:3 LYS
Using Dunbrack library
mutadedModel #3/GU PHE 3: phi -101.5, psi -13.2 trans
Applying LYS rotamer (chi angles: 68.6 -178.4 179.9 -178.9) to mutadedModel
#3/GU LYS 3
> color #3/GU:3 yellow
> swapaa #3/GU:4 PRO
Using Dunbrack library
mutadedModel #3/GU THR 4: phi -91.1, psi -20.2 trans
Applying PRO rotamer (chi angles: 31.2 -36.1) to mutadedModel #3/GU PRO 4
> color #3/GU:4 yellow
> swapaa #3/GU:5 THR
Using Dunbrack library
mutadedModel #3/GU ARG 5: phi -141.6, psi 3.8 trans
Applying THR rotamer (chi angles: 60.7) to mutadedModel #3/GU THR 5
> color #3/GU:5 yellow
> swapaa #3/GU:6 SER
Using Dunbrack library
mutadedModel #3/GU LYS 6: phi -115.4, psi 167.1 trans
Applying SER rotamer (chi angles: -179.7) to mutadedModel #3/GU SER 6
> color #3/GU:6 yellow
> swapaa #3/GU:7 PRO
Using Dunbrack library
mutadedModel #3/GU ILE 7: phi -80.2, psi 141.2 trans
Applying PRO rotamer (chi angles: -18.0 32.4) to mutadedModel #3/GU PRO 7
> color #3/GU:7 yellow
> swapaa #3/GU:8 ASN
Using Dunbrack library
mutadedModel #3/GU GLN 8: phi -40.2, psi 104.1 trans
Applying ASN rotamer (chi angles: -174.1 125.4) to mutadedModel #3/GU ASN 8
> color #3/GU:8 yellow
> swapaa #3/GU:9 PHE
Using Dunbrack library
mutadedModel #3/GU LEU 9: phi -53.5, psi -89.9 trans
Applying PHE rotamer (chi angles: -179.7 53.1) to mutadedModel #3/GU PHE 9
> color #3/GU:9 yellow
> swapaa #3/GU:10 MET
Using Dunbrack library
mutadedModel #3/GU THR 10: phi 69.4, psi 11.6 cis
Applying MET rotamer (chi angles: -67.2 176.5 70.1) to mutadedModel #3/GU MET
10
> color #3/GU:10 yellow
> swapaa #3/GU:11 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU ASN 11 to ALA
> color #3/GU:11 yellow
> swapaa #3/GU:12 GLN
Using Dunbrack library
mutadedModel #3/GU SER 12: phi 160.5, psi 136.6 trans
Applying GLN rotamer (chi angles: -63.5 -64.8 -50.4) to mutadedModel #3/GU GLN
12
> color #3/GU:12 yellow
> swapaa #3/GU:13 GLY
Using Dunbrack library
Swapping mutadedModel #3/GU PRO 13 to GLY
> color #3/GU:13 yellow
> swapaa #3/GU:14 ILE
Using Dunbrack library
mutadedModel #3/GU GLY 14: phi 96.0, psi -93.6 trans
Applying ILE rotamer (chi angles: -59.0 -60.8) to mutadedModel #3/GU ILE 14
> color #3/GU:14 yellow
> swapaa #3/GU:15 TRP
Using Dunbrack library
mutadedModel #3/GU ILE 15: phi -15.8, psi 10.7 trans
Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/GU TRP 15
> color #3/GU:15 yellow
> swapaa #3/GU:16 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU SER 16 to ALA
> color #3/GU:16 yellow
> swapaa #3/GU:18 PHE
Using Dunbrack library
mutadedModel #3/GU ARG 18: phi 26.9, psi -9.7 trans
Applying PHE rotamer (chi angles: -67.5 98.9) to mutadedModel #3/GU PHE 18
> color #3/GU:18 yellow
> swapaa #3/GU:19 ARG
Using Dunbrack library
mutadedModel #3/GU LEU 19: phi -14.4, psi -32.4 trans
Applying ARG rotamer (chi angles: -178.4 -92.8 178.6 -84.3) to mutadedModel
#3/GU ARG 19
> color #3/GU:19 yellow
> swapaa #3/GU:20 TYR
Using Dunbrack library
mutadedModel #3/GU GLY 20: phi 167.3, psi 145.8 trans
Applying TYR rotamer (chi angles: -178.6 52.3) to mutadedModel #3/GU TYR 20
> color #3/GU:20 yellow
> swapaa #3/GU:22 ILE
Using Dunbrack library
mutadedModel #3/GU GLN 22: phi -96.0, psi -50.8 trans
Applying ILE rotamer (chi angles: -164.1 -80.1) to mutadedModel #3/GU ILE 22
> color #3/GU:22 yellow
> swapaa #3/GU:24 HIS
Using Dunbrack library
mutadedModel #3/GU CYS 24: phi -72.2, psi -39.3 trans
Applying HIS rotamer (chi angles: -176.1 -108.3) to mutadedModel #3/GU HIS 24
> color #3/GU:24 yellow
> swapaa #3/GU:26 PHE
Using Dunbrack library
mutadedModel #3/GU LYS 26: phi -136.6, psi -37.5 trans
Applying PHE rotamer (chi angles: -65.1 102.9) to mutadedModel #3/GU PHE 26
> color #3/GU:26 yellow
> swapaa #3/GU:28 PRO
Using Dunbrack library
mutadedModel #3/GU SER 28: phi -101.3, psi -28.4 trans
Applying PRO rotamer (chi angles: 26.5 -34.7) to mutadedModel #3/GU PRO 28
> color #3/GU:28 yellow
> swapaa #3/GU:29 ASN
Using Dunbrack library
mutadedModel #3/GU GLN 29: phi -74.7, psi -111.1 trans
Applying ASN rotamer (chi angles: -69.4 -54.9) to mutadedModel #3/GU ASN 29
> color #3/GU:29 yellow
> swapaa #3/GU:30 MET
Using Dunbrack library
mutadedModel #3/GU ASP 30: phi -13.3, psi 77.1 trans
Applying MET rotamer (chi angles: -170.7 67.5 -101.0) to mutadedModel #3/GU
MET 30
> color #3/GU:30 yellow
> swapaa #3/GU:31 TYR
Using Dunbrack library
mutadedModel #3/GU TRP 31: phi -153.2, psi -35.9 trans
Applying TYR rotamer (chi angles: -65.8 101.9) to mutadedModel #3/GU TYR 31
> color #3/GU:31 yellow
> swapaa #3/GU:33 GLU
Using Dunbrack library
mutadedModel #3/GU ILE 33: phi -81.2, psi -27.9 trans
Applying GLU rotamer (chi angles: -67.4 179.1 -7.7) to mutadedModel #3/GU GLU
33
> color #3/GU:33 yellow
> swapaa #3/GU:35 LEU
Using Dunbrack library
mutadedModel #3/GU ILE 35: phi 17.4, psi 12.7 trans
Applying LEU rotamer (chi angles: -179.8 62.5) to mutadedModel #3/GU LEU 35
> color #3/GU:35 yellow
> swapaa #3/GU:36 SER
Using Dunbrack library
mutadedModel #3/GU PHE 36: phi -145.8, psi -90.7 cis
Applying SER rotamer (chi angles: 59.2) to mutadedModel #3/GU SER 36
> color #3/GU:36 yellow
> swapaa #3/GU:37 VAL
Using Dunbrack library
mutadedModel #3/GU ALA 37: phi 23.2, psi 6.2 cis
Applying VAL rotamer (chi angles: 175.8) to mutadedModel #3/GU VAL 37
> color #3/GU:37 yellow
> swapaa #3/GU:38 GLN
Using Dunbrack library
mutadedModel #3/GU MET 38: phi -87.8, psi -60.6 cis
Applying GLN rotamer (chi angles: -68.3 79.8 37.5) to mutadedModel #3/GU GLN
38
> color #3/GU:38 yellow
> swapaa #3/GU:39 ASN
Using Dunbrack library
mutadedModel #3/GU ASP 39: phi -91.9, psi 11.9 trans
Applying ASN rotamer (chi angles: -69.7 -121.3) to mutadedModel #3/GU ASN 39
> color #3/GU:39 yellow
> swapaa #3/GU:40 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU SER 40 to ALA
> color #3/GU:40 yellow
> swapaa #3/GU:41 HIS
Using Dunbrack library
mutadedModel #3/GU PHE 41: phi -82.5, psi -26.0 trans
Applying HIS rotamer (chi angles: -68.9 -68.5) to mutadedModel #3/GU HIS 41
> color #3/GU:41 yellow
> swapaa #3/GU:42 LYS
Using Dunbrack library
mutadedModel #3/GU MET 42: phi -67.4, psi -33.2 trans
Applying LYS rotamer (chi angles: -86.1 67.9 178.6 178.3) to mutadedModel
#3/GU LYS 42
> color #3/GU:42 yellow
> swapaa #3/GU:43 VAL
Using Dunbrack library
mutadedModel #3/GU ILE 43: phi -76.6, psi -36.3 trans
Applying VAL rotamer (chi angles: 174.0) to mutadedModel #3/GU VAL 43
> color #3/GU:43 yellow
> swapaa #3/GU:44 GLU
Using Dunbrack library
mutadedModel #3/GU SER 44: phi -69.1, psi -39.0 trans
Applying GLU rotamer (chi angles: -170.6 -83.2 -53.7) to mutadedModel #3/GU
GLU 44
> color #3/GU:44 yellow
> swapaa #3/GU:50 GLN
Using Dunbrack library
mutadedModel #3/GU ARG 50: phi -75.7, psi -30.7 trans
Applying GLN rotamer (chi angles: -174.4 63.6 74.3) to mutadedModel #3/GU GLN
50
> color #3/GU:50 yellow
> swapaa #3/GU:51 LYS
Using Dunbrack library
mutadedModel #3/GU VAL 51: phi -69.3, psi -41.4 trans
Applying LYS rotamer (chi angles: -70.1 179.3 -179.7 178.4) to mutadedModel
#3/GU LYS 51
> color #3/GU:51 yellow
> swapaa #3/GU:53 ILE
Using Dunbrack library
mutadedModel #3/GU ASN 53: phi -79.3, psi -16.1 trans
Applying ILE rotamer (chi angles: -67.1 168.8) to mutadedModel #3/GU ILE 53
> color #3/GU:53 yellow
> swapaa #3/GU:54 LYS
Using Dunbrack library
mutadedModel #3/GU LEU 54: phi -97.1, psi -36.4 trans
Applying LYS rotamer (chi angles: -68.9 177.2 70.3 68.7) to mutadedModel #3/GU
LYS 54
> color #3/GU:54 yellow
> swapaa #3/GU:55 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU SER 55 to ALA
> color #3/GU:55 yellow
> swapaa #3/GU:57 LYS
Using Dunbrack library
mutadedModel #3/GU ASN 57: phi -123.4, psi 17.8 trans
Applying LYS rotamer (chi angles: -61.5 -65.8 -173.6 -67.0) to mutadedModel
#3/GU LYS 57
> color #3/GU:57 yellow
> swapaa #3/GU:59 ASP
Using Dunbrack library
mutadedModel #3/GU SER 59: phi -80.4, psi 135.9 trans
Applying ASP rotamer (chi angles: 61.5 61.2) to mutadedModel #3/GU ASP 59
> color #3/GU:59 yellow
> swapaa #3/GU:60 TYR
Using Dunbrack library
mutadedModel #3/GU ARG 60: phi -111.4, psi 24.2 trans
Applying TYR rotamer (chi angles: 55.4 27.1) to mutadedModel #3/GU TYR 60
> color #3/GU:60 yellow
> swapaa #3/GU:62 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU ASP 62 to ALA
> color #3/GU:62 yellow
> swapaa #3/GU:63 LEU
Using Dunbrack library
mutadedModel #3/GU MET 63: phi -73.5, psi -18.8 trans
Applying LEU rotamer (chi angles: -87.6 57.9) to mutadedModel #3/GU LEU 63
> color #3/GU:63 yellow
> swapaa #3/GU:64 LEU
Using Dunbrack library
mutadedModel #3/GU ARG 64: phi -84.0, psi 0.3 trans
Applying LEU rotamer (chi angles: -177.2 60.0) to mutadedModel #3/GU LEU 64
> color #3/GU:64 yellow
> swapaa #3/GU:65 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU GLY 65 to ALA
> color #3/GU:65 yellow
> swapaa #3/GU:66 LEU
Using Dunbrack library
mutadedModel #3/GU ASN 66: phi -71.2, psi 143.2 trans
Applying LEU rotamer (chi angles: -175.2 66.1) to mutadedModel #3/GU LEU 66
> color #3/GU:66 yellow
> swapaa #3/GU:67 PRO
Using Dunbrack library
mutadedModel #3/GU ASP 67: phi -91.8, psi 130.6 trans
Applying PRO rotamer (chi angles: 30.4 -32.4) to mutadedModel #3/GU PRO 67
> color #3/GU:67 yellow
> swapaa #3/GU:68 VAL
Using Dunbrack library
mutadedModel #3/GU GLY 68: phi -68.9, psi 85.9 trans
Applying VAL rotamer (chi angles: 64.4) to mutadedModel #3/GU VAL 68
> color #3/GU:68 yellow
> swapaa #3/GU:69 THR
Using Dunbrack library
mutadedModel #3/GU ILE 69: phi -134.0, psi 23.9 trans
Applying THR rotamer (chi angles: -60.3) to mutadedModel #3/GU THR 69
> color #3/GU:69 yellow
> swapaa #3/GU:70 ASP
Using Dunbrack library
mutadedModel #3/GU SER 70: phi -86.8, psi 169.6 trans
Applying ASP rotamer (chi angles: -161.9 85.1) to mutadedModel #3/GU ASP 70
> color #3/GU:70 yellow
> swapaa #3/GU:71 HIS
Using Dunbrack library
mutadedModel #3/GU PHE 71: phi -80.5, psi -28.4 trans
Applying HIS rotamer (chi angles: -174.6 -25.0) to mutadedModel #3/GU HIS 71
> color #3/GU:71 yellow
> swapaa #3/GU:73 HIS
Using Dunbrack library
mutadedModel #3/GU PHE 73: phi -82.0, psi 122.7 trans
Applying HIS rotamer (chi angles: -174.6 -73.4) to mutadedModel #3/GU HIS 73
> color #3/GU:73 yellow
> swapaa #3/GU:75 TYR
Using Dunbrack library
mutadedModel #3/GU PHE 75: phi -115.3, psi 78.4 trans
Applying TYR rotamer (chi angles: -60.8 120.3) to mutadedModel #3/GU TYR 75
> color #3/GU:75 yellow
> swapaa #3/GU:76 LYS
Using Dunbrack library
mutadedModel #3/GU ASN 76: phi -142.4, psi 74.4 trans
Applying LYS rotamer (chi angles: -146.7 -61.9 97.2 56.3) to mutadedModel
#3/GU LYS 76
> color #3/GU:76 yellow
> swapaa #3/GU:77 MET
Using Dunbrack library
mutadedModel #3/GU GLN 77: phi -91.0, psi 122.0 trans
Applying MET rotamer (chi angles: -59.7 -61.6 -67.7) to mutadedModel #3/GU MET
77
> color #3/GU:77 yellow
> swapaa #3/GU:78 GLU
Using Dunbrack library
mutadedModel #3/GU VAL 78: phi -88.2, psi 149.8 trans
Applying GLU rotamer (chi angles: -64.3 83.0 -8.1) to mutadedModel #3/GU GLU
78
> color #3/GU:78 yellow
> swapaa #3/GU:79 TYR
Using Dunbrack library
mutadedModel #3/GU HIS 79: phi -88.7, psi 163.5 trans
Applying TYR rotamer (chi angles: -68.2 68.9) to mutadedModel #3/GU TYR 79
> color #3/GU:79 yellow
> swapaa #3/GU:82 GLU
Using Dunbrack library
mutadedModel #3/GU ASN 82: phi -78.9, psi -27.8 trans
Applying GLU rotamer (chi angles: -67.4 179.1 -65.6) to mutadedModel #3/GU GLU
82
> color #3/GU:82 yellow
> swapaa #3/GU:83 LYS
Using Dunbrack library
mutadedModel #3/GU PHE 83: phi -77.4, psi -22.0 trans
Applying LYS rotamer (chi angles: -68.6 -177.5 175.0 65.8) to mutadedModel
#3/GU LYS 83
> color #3/GU:83 yellow
> swapaa #3/GU:85 MET
Using Dunbrack library
mutadedModel #3/GU ILE 85: phi -63.2, psi -43.3 trans
Applying MET rotamer (chi angles: -69.5 -61.0 -67.4) to mutadedModel #3/GU MET
85
> color #3/GU:85 yellow
> swapaa #3/GU:87 SER
Using Dunbrack library
mutadedModel #3/GU THR 87: phi -81.4, psi 149.3 trans
Applying SER rotamer (chi angles: 65.0) to mutadedModel #3/GU SER 87
> color #3/GU:87 yellow
> swapaa #3/GU:88 ASP
Using Dunbrack library
mutadedModel #3/GU SER 88: phi -62.3, psi 130.2 trans
Applying ASP rotamer (chi angles: -173.9 85.4) to mutadedModel #3/GU ASP 88
> color #3/GU:88 yellow
> swapaa #3/GU:89 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU PRO 89 to ALA
> color #3/GU:89 yellow
> swapaa #3/GU:90 ARG
Using Dunbrack library
mutadedModel #3/GU GLU 90: phi -79.4, psi 4.1 trans
Applying ARG rotamer (chi angles: 178.6 65.7 -178.3 83.5) to mutadedModel
#3/GU ARG 90
> color #3/GU:90 yellow
> swapaa #3/GU:93 GLY
Using Dunbrack library
Swapping mutadedModel #3/GU SER 93 to GLY
> color #3/GU:93 yellow
> swapaa #3/GU:94 PHE
Using Dunbrack library
mutadedModel #3/GU LYS 94: phi -169.6, psi -45.0 trans
Applying PHE rotamer (chi angles: -178.6 77.3) to mutadedModel #3/GU PHE 94
> color #3/GU:94 yellow
> swapaa #3/GU:97 LYS
Using Dunbrack library
mutadedModel #3/GU ARG 97: phi -82.7, psi -36.3 trans
Applying LYS rotamer (chi angles: -177.4 77.6 -89.8 -82.1) to mutadedModel
#3/GU LYS 97
> color #3/GU:97 yellow
> swapaa #3/GU:99 TYR
Using Dunbrack library
mutadedModel #3/GU TRP 99: phi -61.0, psi -46.8 trans
Applying TYR rotamer (chi angles: 177.2 79.4) to mutadedModel #3/GU TYR 99
> color #3/GU:99 yellow
> swapaa #3/GU:101 SER
Using Dunbrack library
mutadedModel #3/GU GLU 101: phi -70.3, psi -41.2 trans
Applying SER rotamer (chi angles: -65.9) to mutadedModel #3/GU SER 101
> color #3/GU:101 yellow
> swapaa #3/GU:102 LYS
Using Dunbrack library
mutadedModel #3/GU SER 102: phi -63.1, psi -34.3 trans
Applying LYS rotamer (chi angles: 66.8 -172.4 -70.3 -174.3) to mutadedModel
#3/GU LYS 102
> color #3/GU:102 yellow
> swapaa #3/GU:103 MET
Using Dunbrack library
mutadedModel #3/GU LYS 103: phi -77.5, psi -35.1 trans
Applying MET rotamer (chi angles: -65.7 -60.7 97.8) to mutadedModel #3/GU MET
103
> color #3/GU:103 yellow
> swapaa #3/GU:105 CYS
Using Dunbrack library
mutadedModel #3/GU ASN 105: phi -71.4, psi -39.0 trans
Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/GU CYS 105
> color #3/GU:105 yellow
> swapaa #3/GU:106 PHE
Using Dunbrack library
mutadedModel #3/GU TYR 106: phi -64.0, psi -14.4 trans
Applying PHE rotamer (chi angles: -177.2 21.0) to mutadedModel #3/GU PHE 106
> color #3/GU:106 yellow
> swapaa #3/GU:108 GLU
Using Dunbrack library
mutadedModel #3/GU LEU 108: phi -78.7, psi -21.2 trans
Applying GLU rotamer (chi angles: -65.4 -65.0 -42.6) to mutadedModel #3/GU GLU
108
> color #3/GU:108 yellow
> swapaa #3/GU:109 GLY
Using Dunbrack library
Swapping mutadedModel #3/GU ALA 109 to GLY
> color #3/GU:109 yellow
> swapaa #3/GU:110 LEU
Using Dunbrack library
mutadedModel #3/GU ILE 110: phi -73.7, psi 40.3 trans
Applying LEU rotamer (chi angles: -172.5 -73.2) to mutadedModel #3/GU LEU 110
> color #3/GU:110 yellow
> swapaa #3/GU:111 GLN
Using Dunbrack library
mutadedModel #3/GU MET 111: phi -48.5, psi 9.9 trans
Applying GLN rotamer (chi angles: 68.1 -86.0 30.6) to mutadedModel #3/GU GLN
111
> color #3/GU:111 yellow
> swapaa #3/GU:113 HIS
Using Dunbrack library
mutadedModel #3/GU ILE 113: phi -76.1, psi -29.3 trans
Applying HIS rotamer (chi angles: 66.2 76.1) to mutadedModel #3/GU HIS 113
> color #3/GU:113 yellow
> swapaa #3/GU:114 LYS
Using Dunbrack library
mutadedModel #3/GU GLY 114: phi -89.5, psi -6.2 trans
Applying LYS rotamer (chi angles: -67.9 178.9 70.3 68.8) to mutadedModel #3/GU
LYS 114
> color #3/GU:114 yellow
> swapaa #3/GU:115 TRP
Using Dunbrack library
mutadedModel #3/GU GLY 115: phi 36.1, psi -80.8 trans
Applying TRP rotamer (chi angles: 61.1 -1.2) to mutadedModel #3/GU TRP 115
> color #3/GU:115 yellow
> swapaa #3/GU:117 CYS
Using Dunbrack library
mutadedModel #3/GU VAL 117: phi -95.2, psi 138.2 trans
Applying CYS rotamer (chi angles: -63.5) to mutadedModel #3/GU CYS 117
> color #3/GU:117 yellow
> swapaa #3/GU:118 LEU
Using Dunbrack library
mutadedModel #3/GU PRO 118: phi -104.9, psi 103.6 trans
Applying LEU rotamer (chi angles: 61.4 80.5) to mutadedModel #3/GU LEU 118
> color #3/GU:118 yellow
> swapaa #3/GU:119 GLN
Using Dunbrack library
mutadedModel #3/GU LEU 119: phi -15.0, psi -25.6 trans
Applying GLN rotamer (chi angles: -176.3 65.5 76.0) to mutadedModel #3/GU GLN
119
> color #3/GU:119 yellow
> swapaa #3/GU:120 ASP
Using Dunbrack library
mutadedModel #3/GU THR 120: phi -87.5, psi -13.8 trans
Applying ASP rotamer (chi angles: -166.2 -33.8) to mutadedModel #3/GU ASP 120
> color #3/GU:120 yellow
> swapaa #3/GU:121 ASP
Using Dunbrack library
mutadedModel #3/GU ARG 121: phi -82.9, psi -9.5 trans
Applying ASP rotamer (chi angles: 62.7 -0.3) to mutadedModel #3/GU ASP 121
> color #3/GU:121 yellow
> swapaa #3/GU:123 ILE
Using Dunbrack library
mutadedModel #3/GU LEU 123: phi -67.3, psi 143.0 trans
Applying ILE rotamer (chi angles: -166.6 167.1) to mutadedModel #3/GU ILE 123
> color #3/GU:123 yellow
> swapaa #3/GU:125 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU CYS 125 to ALA
> color #3/GU:125 yellow
> swapaa #3/GU:126 HIS
Using Dunbrack library
mutadedModel #3/GU ALA 126: phi -115.2, psi -11.0 trans
Applying HIS rotamer (chi angles: -175.6 -108.3) to mutadedModel #3/GU HIS 126
> color #3/GU:126 yellow
> swapaa #3/GU:128 TRP
Using Dunbrack library
mutadedModel #3/GU TYR 128: phi -69.6, psi -24.0 trans
Applying TRP rotamer (chi angles: 62.2 104.0) to mutadedModel #3/GU TRP 128
> color #3/GU:128 yellow
> swapaa #3/GU:130 ASN
Using Dunbrack library
mutadedModel #3/GU ASP 130: phi -88.1, psi -34.0 trans
Applying ASN rotamer (chi angles: 63.6 -138.0) to mutadedModel #3/GU ASN 130
> color #3/GU:130 yellow
> swapaa #3/GU:132 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU SER 132 to ALA
> color #3/GU:132 yellow
> swapaa #3/GU:133 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU SER 133 to ALA
> color #3/GU:133 yellow
> swapaa #3/GU:135 THR
Using Dunbrack library
mutadedModel #3/GU VAL 135: phi -63.5, psi -39.7 trans
Applying THR rotamer (chi angles: -61.5) to mutadedModel #3/GU THR 135
> color #3/GU:135 yellow
> swapaa #3/GU:137 ALA
Using Dunbrack library
Swapping mutadedModel #3/GU GLY 137 to ALA
> color #3/GU:137 yellow
> swapaa #3/GU:138 PRO
Using Dunbrack library
mutadedModel #3/GU LYS 138: phi -51.7, psi 132.2 trans
Applying PRO rotamer (chi angles: -29.7 39.1) to mutadedModel #3/GU PRO 138
> color #3/GU:138 yellow
> swapaa #3/GU:139 LYS
Using Dunbrack library
mutadedModel #3/GU PHE 139: phi -79.4, psi -23.4 trans
Applying LYS rotamer (chi angles: -63.7 -63.8 -174.4 -67.0) to mutadedModel
#3/GU LYS 139
> color #3/GU:139 yellow
> swapaa #3/GU:140 ASP
Using Dunbrack library
mutadedModel #3/GU HIS 140: phi -80.5, psi -36.3 trans
Applying ASP rotamer (chi angles: 57.9 -18.4) to mutadedModel #3/GU ASP 140
> color #3/GU:140 yellow
> swapaa #3/GU:141 LYS
Using Dunbrack library
mutadedModel #3/GU GLU 141: phi -60.7, psi -35.0 trans
Applying LYS rotamer (chi angles: -70.5 -179.1 -177.8 -64.9) to mutadedModel
#3/GU LYS 141
> color #3/GU:141 yellow
> swapaa #3/GU:142 ILE
Using Dunbrack library
mutadedModel #3/GU THR 142: phi -70.5, psi -39.7 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/GU ILE 142
> color #3/GU:142 yellow
> swapaa #3/GU:144 HIS
Using Dunbrack library
mutadedModel #3/GU PHE 144: phi -72.5, psi -34.9 trans
Applying HIS rotamer (chi angles: -70.1 81.9) to mutadedModel #3/GU HIS 144
> color #3/GU:144 yellow
> swapaa #3/GU:146 ASP
Using Dunbrack library
mutadedModel #3/GU ALA 146: phi -77.1, psi -36.9 trans
Applying ASP rotamer (chi angles: -68.4 -18.4) to mutadedModel #3/GU ASP 146
> color #3/GU:146 yellow
> swapaa #3/GU:149 VAL
Using Dunbrack library
mutadedModel #3/GU THR 149: phi -73.0, psi -36.8 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/GU VAL 149
> color #3/GU:149 yellow
> swapaa #3/GU:150 MET
Using Dunbrack library
mutadedModel #3/GU GLN 150: phi -58.9, psi -41.7 trans
Applying MET rotamer (chi angles: -69.1 174.7 69.8) to mutadedModel #3/GU MET
150
> color #3/GU:150 yellow
> swapaa #3/GU:156 LYS
Using Dunbrack library
mutadedModel #3/GU PHE 156: phi -94.3, psi -16.1 trans
Applying LYS rotamer (chi angles: 51.3 89.3 70.7 178.4) to mutadedModel #3/GU
LYS 156
> color #3/GU:156 yellow
> swapaa #3/GU:157 ASP
Using Dunbrack library
mutadedModel #3/GU LEU 157: phi -80.4, psi -26.6 trans
Applying ASP rotamer (chi angles: -67.9 -19.5) to mutadedModel #3/GU ASP 157
> color #3/GU:157 yellow
> swapaa #3/GU:158 LYS
Using Dunbrack library
mutadedModel #3/GU PHE 158: phi -95.6, psi -14.3 trans
Applying LYS rotamer (chi angles: -65.2 -179.1 179.6 178.6) to mutadedModel
#3/GU LYS 158
> color #3/GU:158 yellow
> swapaa #3/GU:159 TYR
Using Dunbrack library
mutadedModel #3/GU ARG 159: phi 57.3, psi 34.8 trans
Applying TYR rotamer (chi angles: -58.8 79.2) to mutadedModel #3/GU TYR 159
> color #3/GU:159 yellow
> swapaa #3/GU:161 TYR
Using Dunbrack library
mutadedModel #3/GU HIS 161: phi -71.4, psi 170.9 trans
Applying TYR rotamer (chi angles: -69.2 98.8) to mutadedModel #3/GU TYR 161
> color #3/GU:161 yellow
> swapaa #3/GU:162 GLU
Using Dunbrack library
mutadedModel #3/GU ASP 162: phi -91.1, psi 153.1 trans
Applying GLU rotamer (chi angles: -174.7 67.4 -12.0) to mutadedModel #3/GU GLU
162
> color #3/GU:162 yellow
> swapaa #3/GU:167 TRP
Using Dunbrack library
mutadedModel #3/GU CYS 167: phi -59.7, psi 129.0 trans
Applying TRP rotamer (chi angles: 58.5 -141.3) to mutadedModel #3/GU TRP 167
> color #3/GU:167 yellow
> swapaa #3/GU:171 VAL
Using Dunbrack library
mutadedModel #3/GU THR 171: phi -83.7, psi -7.5 trans
Applying VAL rotamer (chi angles: -59.4) to mutadedModel #3/GU VAL 171
> color #3/GU:171 yellow
> swapaa #3/GU:172 ASP
Using Dunbrack library
mutadedModel #3/GU VAL 172: phi -99.2, psi -42.5 trans
Applying ASP rotamer (chi angles: -64.3 -52.5) to mutadedModel #3/GU ASP 172
> color #3/GU:172 yellow
> swapaa #3/GU:173 ASN
Using Dunbrack library
mutadedModel #3/GU ASP 173: phi -39.0, psi 57.1 trans
Applying ASN rotamer (chi angles: -69.1 -84.9) to mutadedModel #3/GU ASN 173
> color #3/GU:173 yellow
> swapaa #3/GU:180 TYR
Using Dunbrack library
mutadedModel #3/GU ARG 180: phi -73.6, psi -10.6 trans
Applying TYR rotamer (chi angles: -70.2 -17.0) to mutadedModel #3/GU TYR 180
> color #3/GU:180 yellow
> swapaa #3/GU:183 MET
Using Dunbrack library
mutadedModel #3/GU ARG 183: phi -76.1, psi -41.4 trans
Applying MET rotamer (chi angles: -67.5 176.5 70.8) to mutadedModel #3/GU MET
183
> color #3/GU:183 yellow
> swapaa #3/GU:186 ASP
Using Dunbrack library
mutadedModel #3/GU LEU 186: phi -78.1, psi -10.2 trans
Applying ASP rotamer (chi angles: -166.9 56.7) to mutadedModel #3/GU ASP 186
> color #3/GU:186 yellow
> swapaa #3/GU:187 GLU
Using Dunbrack library
mutadedModel #3/GU LEU 187: phi -77.2, psi -72.2 trans
Applying GLU rotamer (chi angles: -68.3 -64.5 -47.0) to mutadedModel #3/GU GLU
187
> color #3/GU:187 yellow
> swapaa #3/GU:188 TRP
Using Dunbrack library
mutadedModel #3/GU TYR 188: phi 1.2, psi 1.9 trans
Applying TRP rotamer (chi angles: -177.8 -97.0) to mutadedModel #3/GU TRP 188
> color #3/GU:188 yellow
> swapaa #3/GU:189 GLU
Using Dunbrack library
mutadedModel #3/GU MET 189: phi -144.3, psi 27.3 trans
Applying GLU rotamer (chi angles: 59.4 178.7 -1.2) to mutadedModel #3/GU GLU
189
> color #3/GU:189 yellow
> swapaa #3/GU:190 GLU
Using Dunbrack library
mutadedModel #3/GU THR 190: phi -91.8, psi -29.1 trans
Applying GLU rotamer (chi angles: -170.7 -83.6 -83.7) to mutadedModel #3/GU
GLU 190
> color #3/GU:190 yellow
> swapaa #3/GU:191 LYS
Using Dunbrack library
mutadedModel #3/GU ARG 191: phi -73.8, psi -76.0 trans
Applying LYS rotamer (chi angles: -66.4 -169.7 -76.7 76.9) to mutadedModel
#3/GU LYS 191
> color #3/GU:191 yellow
> swapaa #3/GU:192 TRP
Using Dunbrack library
mutadedModel #3/GU HIS 192: phi 155.1, psi 157.3 trans
Applying TRP rotamer (chi angles: -177.6 106.8) to mutadedModel #3/GU TRP 192
> color #3/GU:192 yellow
> swapaa #3/GU:194 PHE
Using Dunbrack library
mutadedModel #3/GU TRP 194: phi -94.2, psi 8.4 trans
Applying PHE rotamer (chi angles: -66.8 -20.2) to mutadedModel #3/GU PHE 194
> color #3/GU:194 yellow
> swapaa #3/GU:195 PHE
Using Dunbrack library
mutadedModel #3/GU HIS 195: phi -113.9, psi 4.1 trans
Applying PHE rotamer (chi angles: -171.4 72.7) to mutadedModel #3/GU PHE 195
> color #3/GU:195 yellow
> swapaa #3/GU:199 GLU
Using Dunbrack library
mutadedModel #3/GU LEU 199: phi -101.7, psi -37.8 trans
Applying GLU rotamer (chi angles: -178.2 65.1 20.3) to mutadedModel #3/GU GLU
199
> color #3/GU:199 yellow
> swapaa #3/GU:200 VAL
Using Dunbrack library
mutadedModel #3/GU SER 200: phi -109.0, psi 152.3 trans
Applying VAL rotamer (chi angles: -62.1) to mutadedModel #3/GU VAL 200
> color #3/GU:200 yellow
> swapaa #3/GU:201 GLU
Using Dunbrack library
mutadedModel #3/GU ASN 201: phi -92.1, psi 125.5 trans
Applying GLU rotamer (chi angles: 61.3 86.8 -38.7) to mutadedModel #3/GU GLU
201
> color #3/GU:201 yellow
> swapaa #3/GU:202 TYR
Using Dunbrack library
mutadedModel #3/GU THR 202: phi -108.5, psi 14.2 trans
Applying TYR rotamer (chi angles: -63.6 9.2) to mutadedModel #3/GU TYR 202
> color #3/GU:202 yellow
> color #3/GU:203 cyan
> select #3/FL
508 atoms, 518 bonds, 65 residues, 1 model selected
> bond #3/FL:45@C #3/FL:46@N reasonable false
Created 0 bonds
> bond #3/FL:46@C #3/FL:47@N reasonable false
Created 0 bonds
> bond #3/FL:47@C #3/FL:48@N reasonable false
Created 0 bonds
> bond #3/FL:48@C #3/FL:49@N reasonable false
Created 0 bonds
> bond #3/FL:49@C #3/FL:50@N reasonable false
Created 0 bonds
> bond #3/FL:50@C #3/FL:51@N reasonable false
Created 0 bonds
> bond #3/FL:51@C #3/FL:52@N reasonable false
Created 0 bonds
> bond #3/FL:52@C #3/FL:53@N reasonable false
Created 0 bonds
> bond #3/FL:53@C #3/FL:54@N reasonable false
Created 0 bonds
> bond #3/FL:54@C #3/FL:55@N reasonable false
Created 0 bonds
> bond #3/FL:55@C #3/FL:56@N reasonable false
Created 0 bonds
> bond #3/FL:56@C #3/FL:57@N reasonable false
Created 0 bonds
> bond #3/FL:57@C #3/FL:58@N reasonable false
Created 0 bonds
> bond #3/FL:58@C #3/FL:59@N reasonable false
Created 0 bonds
> bond #3/FL:59@C #3/FL:60@N reasonable false
Created 0 bonds
> bond #3/FL:60@C #3/FL:61@N reasonable false
Created 0 bonds
> bond #3/FL:61@C #3/FL:62@N reasonable false
Created 0 bonds
> bond #3/FL:62@C #3/FL:63@N reasonable false
Created 0 bonds
> bond #3/FL:63@C #3/FL:64@N reasonable false
Created 0 bonds
> bond #3/FL:64@C #3/FL:65@N reasonable false
Created 0 bonds
> bond #3/FL:65@C #3/FL:66@N reasonable false
Created 0 bonds
> bond #3/FL:66@C #3/FL:67@N reasonable false
Created 0 bonds
> bond #3/FL:67@C #3/FL:68@N reasonable false
Created 0 bonds
> bond #3/FL:68@C #3/FL:69@N reasonable false
Created 0 bonds
> bond #3/FL:69@C #3/FL:70@N reasonable false
Created 0 bonds
> bond #3/FL:4@C #3/FL:5@N reasonable false
Created 0 bonds
> bond #3/FL:5@C #3/FL:6@N reasonable false
Created 0 bonds
> bond #3/FL:6@C #3/FL:7@N reasonable false
Created 0 bonds
> bond #3/FL:7@C #3/FL:8@N reasonable false
Created 0 bonds
> bond #3/FL:8@C #3/FL:9@N reasonable false
Created 0 bonds
> bond #3/FL:9@C #3/FL:10@N reasonable false
Created 0 bonds
> bond #3/FL:10@C #3/FL:11@N reasonable false
Created 0 bonds
> bond #3/FL:11@C #3/FL:12@N reasonable false
Created 0 bonds
> bond #3/FL:12@C #3/FL:13@N reasonable false
Created 0 bonds
> bond #3/FL:13@C #3/FL:14@N reasonable false
Created 0 bonds
> bond #3/FL:14@C #3/FL:15@N reasonable false
Created 0 bonds
> bond #3/FL:15@C #3/FL:16@N reasonable false
Created 0 bonds
> bond #3/FL:16@C #3/FL:17@N reasonable false
Created 0 bonds
> bond #3/FL:17@C #3/FL:18@N reasonable false
Created 0 bonds
> bond #3/FL:18@C #3/FL:19@N reasonable false
Created 0 bonds
> bond #3/FL:19@C #3/FL:20@N reasonable false
Created 0 bonds
> bond #3/FL:20@C #3/FL:21@N reasonable false
Created 0 bonds
> bond #3/FL:21@C #3/FL:22@N reasonable false
Created 0 bonds
> bond #3/FL:22@C #3/FL:23@N reasonable false
Created 0 bonds
> bond #3/FL:23@C #3/FL:24@N reasonable false
Created 0 bonds
> bond #3/FL:24@C #3/FL:25@N reasonable false
Created 0 bonds
> bond #3/FL:25@C #3/FL:26@N reasonable false
Created 0 bonds
> bond #3/FL:26@C #3/FL:27@N reasonable false
Created 0 bonds
> bond #3/FL:27@C #3/FL:28@N reasonable false
Created 0 bonds
> bond #3/FL:28@C #3/FL:29@N reasonable false
Created 0 bonds
> bond #3/FL:29@C #3/FL:30@N reasonable false
Created 0 bonds
> bond #3/FL:30@C #3/FL:31@N reasonable false
Created 0 bonds
> bond #3/FL:31@C #3/FL:32@N reasonable false
Created 0 bonds
> bond #3/FL:32@C #3/FL:33@N reasonable false
Created 0 bonds
> bond #3/FL:33@C #3/FL:34@N reasonable false
Created 0 bonds
> bond #3/FL:34@C #3/FL:35@N reasonable false
Created 0 bonds
> bond #3/FL:35@C #3/FL:36@N reasonable false
Created 0 bonds
> bond #3/FL:36@C #3/FL:37@N reasonable false
Created 0 bonds
> bond #3/FL:39@C #3/FL:40@N reasonable false
Created 0 bonds
> bond #3/FL:40@C #3/FL:41@N reasonable false
Created 0 bonds
> bond #3/FL:41@C #3/FL:42@N reasonable false
Created 0 bonds
> bond #3/FL:42@C #3/FL:43@N reasonable false
Created 0 bonds
> swapaa #3/FL:4 ASP
Using Dunbrack library
mutadedModel #3/FL ALA 4: phi none, psi 153.5 trans
Applying ASP rotamer (chi angles: -72.1 -12.7) to mutadedModel #3/FL ASP 4
> color #3/FL:4 yellow
> swapaa #3/FL:6 VAL
Using Dunbrack library
mutadedModel #3/FL PRO 6: phi -112.8, psi 165.1 trans
Applying VAL rotamer (chi angles: -60.6) to mutadedModel #3/FL VAL 6
> color #3/FL:6 yellow
> swapaa #3/FL:7 ASP
Using Dunbrack library
mutadedModel #3/FL ASN 7: phi -98.5, psi 141.5 trans
Applying ASP rotamer (chi angles: 62.4 -52.2) to mutadedModel #3/FL ASP 7
> color #3/FL:7 yellow
> swapaa #3/FL:8 ILE
Using Dunbrack library
mutadedModel #3/FL THR 8: phi -96.3, psi -11.1 trans
Applying ILE rotamer (chi angles: 64.0 170.4) to mutadedModel #3/FL ILE 8
> color #3/FL:8 yellow
> swapaa #3/FL:9 LYS
Using Dunbrack library
mutadedModel #3/FL ARG 9: phi -65.9, psi -44.2 trans
Applying LYS rotamer (chi angles: -176.2 175.4 -179.9 180.0) to mutadedModel
#3/FL LYS 9
> color #3/FL:9 yellow
> swapaa #3/FL:10 LEU
Using Dunbrack library
mutadedModel #3/FL ASP 10: phi -61.3, psi -43.1 trans
Applying LEU rotamer (chi angles: -178.6 60.2) to mutadedModel #3/FL LEU 10
> color #3/FL:10 yellow
> swapaa #3/FL:11 ASP
Using Dunbrack library
mutadedModel #3/FL VAL 11: phi -71.5, psi -36.5 trans
Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/FL ASP 11
> color #3/FL:11 yellow
> swapaa #3/FL:13 GLU
Using Dunbrack library
mutadedModel #3/FL ASP 13: phi -65.6, psi -29.5 trans
Applying GLU rotamer (chi angles: -68.4 178.8 -36.2) to mutadedModel #3/FL GLU
13
> color #3/FL:13 yellow
> swapaa #3/FL:14 LYS
Using Dunbrack library
mutadedModel #3/FL ALA 14: phi -78.0, psi -31.2 trans
Applying LYS rotamer (chi angles: -68.4 -171.2 -71.7 -173.9) to mutadedModel
#3/FL LYS 14
> color #3/FL:14 yellow
> swapaa #3/FL:16 CYS
Using Dunbrack library
mutadedModel #3/FL ALA 16: phi -65.1, psi -45.8 trans
Applying CYS rotamer (chi angles: -69.1) to mutadedModel #3/FL CYS 16
> color #3/FL:16 yellow
> swapaa #3/FL:17 LEU
Using Dunbrack library
mutadedModel #3/FL ILE 17: phi -62.0, psi -30.3 trans
Applying LEU rotamer (chi angles: -68.4 173.8) to mutadedModel #3/FL LEU 17
> color #3/FL:17 yellow
> swapaa #3/FL:19 THR
Using Dunbrack library
mutadedModel #3/FL GLU 19: phi -100.4, psi -50.1 trans
Applying THR rotamer (chi angles: -59.9) to mutadedModel #3/FL THR 19
> color #3/FL:19 yellow
> swapaa #3/FL:20 ASP
Using Dunbrack library
mutadedModel #3/FL GLY 20: phi -83.5, psi -49.2 trans
Applying ASP rotamer (chi angles: -69.6 -17.4) to mutadedModel #3/FL ASP 20
> color #3/FL:20 yellow
> swapaa #3/FL:21 CYS
Using Dunbrack library
mutadedModel #3/FL LEU 21: phi -82.6, psi 8.6 trans
Applying CYS rotamer (chi angles: -65.6) to mutadedModel #3/FL CYS 21
> color #3/FL:21 yellow
> swapaa #3/FL:23 LYS
Using Dunbrack library
mutadedModel #3/FL GLU 23: phi -74.8, psi -31.8 trans
Applying LYS rotamer (chi angles: -81.5 76.8 69.6 -179.3) to mutadedModel
#3/FL LYS 23
> color #3/FL:23 yellow
> swapaa #3/FL:24 LYS
Using Dunbrack library
mutadedModel #3/FL PHE 24: phi -72.2, psi -23.7 trans
Applying LYS rotamer (chi angles: -64.9 -69.4 178.4 64.4) to mutadedModel
#3/FL LYS 24
> color #3/FL:24 yellow
> swapaa #3/FL:26 GLU
Using Dunbrack library
mutadedModel #3/FL LEU 26: phi -56.0, psi -41.2 trans
Applying GLU rotamer (chi angles: -69.4 -64.9 -74.8) to mutadedModel #3/FL GLU
26
> color #3/FL:26 yellow
> swapaa #3/FL:31 CYS
Using Dunbrack library
mutadedModel #3/FL ALA 31: phi -74.3, psi -37.6 trans
Applying CYS rotamer (chi angles: -69.5) to mutadedModel #3/FL CYS 31
> color #3/FL:31 yellow
> swapaa #3/FL:32 LEU
Using Dunbrack library
mutadedModel #3/FL PHE 32: phi -60.1, psi -35.6 trans
Applying LEU rotamer (chi angles: -69.2 172.7) to mutadedModel #3/FL LEU 32
> color #3/FL:32 yellow
> swapaa #3/FL:36 LYS
Using Dunbrack library
mutadedModel #3/FL SER 36: phi -97.7, psi -28.8 trans
Applying LYS rotamer (chi angles: -67.6 -178.3 175.0 65.8) to mutadedModel
#3/FL LYS 36
> color #3/FL:36 yellow
> swapaa #3/FL:37 THR
Using Dunbrack library
mutadedModel #3/FL ASN 37: phi -87.3, psi none trans
Applying THR rotamer (chi angles: 61.1) to mutadedModel #3/FL THR 37
> color #3/FL:37 yellow
> swapaa #3/FL:41 GLU
Using Dunbrack library
mutadedModel #3/FL ALA 41: phi -66.4, psi -35.3 trans
Applying GLU rotamer (chi angles: -66.4 80.3 9.3) to mutadedModel #3/FL GLU 41
> color #3/FL:41 yellow
> swapaa #3/FL:42 LYS
Using Dunbrack library
mutadedModel #3/FL ALA 42: phi -60.9, psi 27.0 trans
Applying LYS rotamer (chi angles: -81.0 76.8 69.7 -179.2) to mutadedModel
#3/FL LYS 42
> color #3/FL:42 yellow
> swapaa #3/FL:43 GLU
Using Dunbrack library
mutadedModel #3/FL ASN 43: phi 40.0, psi none trans
Applying GLU rotamer (chi angles: -166.0 -80.1 -49.5) to mutadedModel #3/FL
GLU 43
> color #3/FL:43 yellow
> swapaa #3/FL:45 HIS
Using Dunbrack library
mutadedModel #3/FL LYS 45: phi none, psi 143.3 trans
Applying HIS rotamer (chi angles: 63.0 85.6) to mutadedModel #3/FL HIS 45
> color #3/FL:45 yellow
> swapaa #3/FL:46 CYS
Using Dunbrack library
mutadedModel #3/FL VAL 46: phi -81.7, psi 38.8 trans
Applying CYS rotamer (chi angles: -177.5) to mutadedModel #3/FL CYS 46
> color #3/FL:46 yellow
> swapaa #3/FL:51 PHE
Using Dunbrack library
mutadedModel #3/FL HIS 51: phi -68.3, psi -28.5 trans
Applying PHE rotamer (chi angles: 72.6 33.9) to mutadedModel #3/FL PHE 51
> color #3/FL:51 yellow
> swapaa #3/FL:53 ILE
Using Dunbrack library
mutadedModel #3/FL GLN 53: phi -62.8, psi -38.1 trans
Applying ILE rotamer (chi angles: -68.1 168.5) to mutadedModel #3/FL ILE 53
> color #3/FL:53 yellow
> swapaa #3/FL:54 VAL
Using Dunbrack library
mutadedModel #3/FL CYS 54: phi -68.2, psi -36.2 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/FL VAL 54
> color #3/FL:54 yellow
> swapaa #3/FL:55 HIS
Using Dunbrack library
mutadedModel #3/FL ARG 55: phi -71.9, psi -51.0 trans
Applying HIS rotamer (chi angles: -178.1 -106.2) to mutadedModel #3/FL HIS 55
> color #3/FL:55 yellow
> swapaa #3/FL:56 CYS
Using Dunbrack library
mutadedModel #3/FL SER 56: phi -57.5, psi -29.8 trans
Applying CYS rotamer (chi angles: 64.7) to mutadedModel #3/FL CYS 56
> color #3/FL:56 yellow
> swapaa #3/FL:58 ASP
Using Dunbrack library
mutadedModel #3/FL ALA 58: phi -67.1, psi -37.9 trans
Applying ASP rotamer (chi angles: -71.0 -16.3) to mutadedModel #3/FL ASP 58
> color #3/FL:58 yellow
> swapaa #3/FL:59 VAL
Using Dunbrack library
mutadedModel #3/FL GLU 59: phi -69.9, psi -29.7 trans
Applying VAL rotamer (chi angles: 173.2) to mutadedModel #3/FL VAL 59
> color #3/FL:59 yellow
> swapaa #3/FL:60 CYS
Using Dunbrack library
mutadedModel #3/FL GLU 60: phi -76.7, psi -28.4 trans
Applying CYS rotamer (chi angles: -68.1) to mutadedModel #3/FL CYS 60
> color #3/FL:60 yellow
> swapaa #3/FL:62 ASP
Using Dunbrack library
mutadedModel #3/FL GLU 62: phi -65.6, psi -28.6 trans
Applying ASP rotamer (chi angles: -71.2 -15.9) to mutadedModel #3/FL ASP 62
> color #3/FL:62 yellow
> swapaa #3/FL:64 LYS
Using Dunbrack library
mutadedModel #3/FL GLU 64: phi -86.4, psi -26.0 trans
Applying LYS rotamer (chi angles: -66.2 -173.9 -72.7 -66.8) to mutadedModel
#3/FL LYS 64
> color #3/FL:64 yellow
> swapaa #3/FL:69 LEU
Using Dunbrack library
mutadedModel #3/FL ARG 69: phi -116.4, psi 144.3 trans
Applying LEU rotamer (chi angles: -60.1 174.9) to mutadedModel #3/FL LEU 69
> color #3/FL:69 yellow
> swapaa #3/FL:70 LYS
Using Dunbrack library
mutadedModel #3/FL VAL 70: phi -55.2, psi none trans
Applying LYS rotamer (chi angles: -179.1 68.7 81.0 -81.3) to mutadedModel
#3/FL LYS 70
> color #3/FL:70 yellow
> select #3/GA
898 atoms, 919 bonds, 108 residues, 1 model selected
> bond #3/GA:17@C #3/GA:18@N reasonable false
Created 0 bonds
> bond #3/GA:18@C #3/GA:19@N reasonable false
Created 0 bonds
> bond #3/GA:19@C #3/GA:20@N reasonable false
Created 1 bond
> bond #3/GA:57@C #3/GA:58@N reasonable false
Created 0 bonds
> bond #3/GA:58@C #3/GA:59@N reasonable false
Created 0 bonds
> bond #3/GA:59@C #3/GA:60@N reasonable false
Created 0 bonds
> bond #3/GA:60@C #3/GA:61@N reasonable false
Created 0 bonds
> bond #3/GA:61@C #3/GA:62@N reasonable false
Created 0 bonds
> bond #3/GA:62@C #3/GA:63@N reasonable false
Created 0 bonds
> bond #3/GA:63@C #3/GA:64@N reasonable false
Created 0 bonds
> bond #3/GA:64@C #3/GA:65@N reasonable false
Created 0 bonds
> bond #3/GA:65@C #3/GA:66@N reasonable false
Created 0 bonds
> bond #3/GA:66@C #3/GA:67@N reasonable false
Created 0 bonds
> bond #3/GA:67@C #3/GA:68@N reasonable false
Created 0 bonds
> bond #3/GA:68@C #3/GA:69@N reasonable false
Created 0 bonds
> bond #3/GA:69@C #3/GA:70@N reasonable false
Created 0 bonds
> bond #3/GA:70@C #3/GA:71@N reasonable false
Created 0 bonds
> bond #3/GA:71@C #3/GA:72@N reasonable false
Created 0 bonds
> bond #3/GA:72@C #3/GA:73@N reasonable false
Created 0 bonds
> bond #3/GA:73@C #3/GA:74@N reasonable false
Created 0 bonds
> bond #3/GA:74@C #3/GA:75@N reasonable false
Created 0 bonds
> bond #3/GA:75@C #3/GA:76@N reasonable false
Created 0 bonds
> bond #3/GA:76@C #3/GA:77@N reasonable false
Created 0 bonds
> bond #3/GA:77@C #3/GA:78@N reasonable false
Created 0 bonds
> bond #3/GA:78@C #3/GA:79@N reasonable false
Created 0 bonds
> bond #3/GA:79@C #3/GA:80@N reasonable false
Created 0 bonds
> bond #3/GA:80@C #3/GA:81@N reasonable false
Created 0 bonds
> bond #3/GA:81@C #3/GA:82@N reasonable false
Created 0 bonds
> bond #3/GA:82@C #3/GA:83@N reasonable false
Created 0 bonds
> bond #3/GA:83@C #3/GA:84@N reasonable false
Created 0 bonds
> bond #3/GA:84@C #3/GA:85@N reasonable false
Created 0 bonds
> bond #3/GA:85@C #3/GA:86@N reasonable false
Created 0 bonds
> bond #3/GA:86@C #3/GA:87@N reasonable false
Created 0 bonds
> bond #3/GA:87@C #3/GA:88@N reasonable false
Created 0 bonds
> bond #3/GA:88@C #3/GA:89@N reasonable false
Created 0 bonds
> bond #3/GA:89@C #3/GA:90@N reasonable false
Created 0 bonds
> bond #3/GA:90@C #3/GA:91@N reasonable false
Created 0 bonds
> bond #3/GA:91@C #3/GA:92@N reasonable false
Created 0 bonds
> bond #3/GA:92@C #3/GA:93@N reasonable false
Created 0 bonds
> bond #3/GA:93@C #3/GA:94@N reasonable false
Created 0 bonds
> bond #3/GA:94@C #3/GA:95@N reasonable false
Created 0 bonds
> bond #3/GA:95@C #3/GA:96@N reasonable false
Created 1 bond
> bond #3/GA:20@C #3/GA:21@N reasonable false
Created 0 bonds
> bond #3/GA:21@C #3/GA:22@N reasonable false
Created 0 bonds
> bond #3/GA:22@C #3/GA:23@N reasonable false
Created 0 bonds
> bond #3/GA:23@C #3/GA:24@N reasonable false
Created 0 bonds
> bond #3/GA:24@C #3/GA:25@N reasonable false
Created 0 bonds
> bond #3/GA:25@C #3/GA:26@N reasonable false
Created 0 bonds
> bond #3/GA:26@C #3/GA:27@N reasonable false
Created 0 bonds
> bond #3/GA:27@C #3/GA:28@N reasonable false
Created 0 bonds
> bond #3/GA:28@C #3/GA:29@N reasonable false
Created 0 bonds
> bond #3/GA:29@C #3/GA:30@N reasonable false
Created 0 bonds
> bond #3/GA:30@C #3/GA:31@N reasonable false
Created 0 bonds
> bond #3/GA:31@C #3/GA:32@N reasonable false
Created 0 bonds
> bond #3/GA:32@C #3/GA:33@N reasonable false
Created 0 bonds
> bond #3/GA:33@C #3/GA:34@N reasonable false
Created 0 bonds
> bond #3/GA:34@C #3/GA:35@N reasonable false
Created 0 bonds
> bond #3/GA:35@C #3/GA:36@N reasonable false
Created 0 bonds
> bond #3/GA:36@C #3/GA:37@N reasonable false
Created 0 bonds
> bond #3/GA:37@C #3/GA:38@N reasonable false
Created 0 bonds
> bond #3/GA:38@C #3/GA:39@N reasonable false
Created 0 bonds
> bond #3/GA:39@C #3/GA:40@N reasonable false
Created 0 bonds
> bond #3/GA:40@C #3/GA:41@N reasonable false
Created 0 bonds
> bond #3/GA:41@C #3/GA:42@N reasonable false
Created 0 bonds
> bond #3/GA:42@C #3/GA:43@N reasonable false
Created 0 bonds
> bond #3/GA:45@C #3/GA:46@N reasonable false
Created 0 bonds
> bond #3/GA:46@C #3/GA:47@N reasonable false
Created 0 bonds
> bond #3/GA:47@C #3/GA:48@N reasonable false
Created 0 bonds
> bond #3/GA:48@C #3/GA:49@N reasonable false
Created 0 bonds
> bond #3/GA:49@C #3/GA:50@N reasonable false
Created 0 bonds
> bond #3/GA:50@C #3/GA:51@N reasonable false
Created 0 bonds
> bond #3/GA:51@C #3/GA:52@N reasonable false
Created 0 bonds
> bond #3/GA:52@C #3/GA:53@N reasonable false
Created 0 bonds
> bond #3/GA:53@C #3/GA:54@N reasonable false
Created 0 bonds
> bond #3/GA:54@C #3/GA:55@N reasonable false
Created 0 bonds
> bond #3/GA:96@C #3/GA:97@N reasonable false
Created 0 bonds
> bond #3/GA:97@C #3/GA:98@N reasonable false
Created 0 bonds
> bond #3/GA:98@C #3/GA:99@N reasonable false
Created 0 bonds
> bond #3/GA:99@C #3/GA:100@N reasonable false
Created 0 bonds
> bond #3/GA:100@C #3/GA:101@N reasonable false
Created 0 bonds
> bond #3/GA:101@C #3/GA:102@N reasonable false
Created 0 bonds
> bond #3/GA:102@C #3/GA:103@N reasonable false
Created 0 bonds
> bond #3/GA:103@C #3/GA:104@N reasonable false
Created 0 bonds
> bond #3/GA:104@C #3/GA:105@N reasonable false
Created 0 bonds
> bond #3/GA:105@C #3/GA:106@N reasonable false
Created 0 bonds
> bond #3/GA:106@C #3/GA:107@N reasonable false
Created 0 bonds
> bond #3/GA:107@C #3/GA:108@N reasonable false
Created 0 bonds
> bond #3/GA:108@C #3/GA:109@N reasonable false
Created 0 bonds
> bond #3/GA:109@C #3/GA:110@N reasonable false
Created 0 bonds
> bond #3/GA:110@C #3/GA:111@N reasonable false
Created 0 bonds
> bond #3/GA:111@C #3/GA:112@N reasonable false
Created 0 bonds
> bond #3/GA:112@C #3/GA:113@N reasonable false
Created 0 bonds
> bond #3/GA:113@C #3/GA:114@N reasonable false
Created 0 bonds
> bond #3/GA:114@C #3/GA:115@N reasonable false
Created 0 bonds
> bond #3/GA:115@C #3/GA:116@N reasonable false
Created 0 bonds
> bond #3/GA:116@C #3/GA:117@N reasonable false
Created 0 bonds
> bond #3/GA:117@C #3/GA:118@N reasonable false
Created 0 bonds
> bond #3/GA:118@C #3/GA:119@N reasonable false
Created 0 bonds
> bond #3/GA:119@C #3/GA:120@N reasonable false
Created 0 bonds
> bond #3/GA:120@C #3/GA:121@N reasonable false
Created 0 bonds
> bond #3/GA:121@C #3/GA:122@N reasonable false
Created 0 bonds
> bond #3/GA:13@C #3/GA:14@N reasonable false
Created 0 bonds
> bond #3/GA:14@C #3/GA:15@N reasonable false
Created 0 bonds
> bond #3/GA:15@C #3/GA:16@N reasonable false
Created 0 bonds
> bond #3/GA:16@C #3/GA:17@N reasonable false
Created 1 bond
> swapaa #3/GA:13 ARG
Using Dunbrack library
mutadedModel #3/GA ALA 13: phi none, psi 168.3 trans
Applying ARG rotamer (chi angles: -66.2 179.5 66.1 84.3) to mutadedModel #3/GA
ARG 13
> color #3/GA:13 yellow
> swapaa #3/GA:14 ALA
Using Dunbrack library
Swapping mutadedModel #3/GA PRO 14 to ALA
> color #3/GA:14 yellow
> swapaa #3/GA:16 ALA
Using Dunbrack library
Swapping mutadedModel #3/GA VAL 16 to ALA
> color #3/GA:16 yellow
> swapaa #3/GA:17 ARG
Using Dunbrack library
mutadedModel #3/GA LYS 17: phi 169.1, psi 144.1 trans
Applying ARG rotamer (chi angles: -178.8 66.8 177.6 173.0) to mutadedModel
#3/GA ARG 17
> color #3/GA:17 yellow
> swapaa #3/GA:18 PRO
Using Dunbrack library
mutadedModel #3/GA SER 18: phi -84.6, psi 76.8 trans
Applying PRO rotamer (chi angles: 31.0 -35.4) to mutadedModel #3/GA PRO 18
> color #3/GA:18 yellow
> swapaa #3/GA:20 PRO
Using Dunbrack library
mutadedModel #3/GA SER 20: phi 71.5, psi 107.7 cis
Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/GA PRO 20
> color #3/GA:20 yellow
> swapaa #3/GA:21 THR
Using Dunbrack library
mutadedModel #3/GA LEU 21: phi -57.2, psi 126.1 trans
Applying THR rotamer (chi angles: -58.5) to mutadedModel #3/GA THR 21
> color #3/GA:21 yellow
> swapaa #3/GA:23 TYR
Using Dunbrack library
mutadedModel #3/GA ARG 23: phi -87.1, psi 157.5 trans
Applying TYR rotamer (chi angles: -68.2 93.4) to mutadedModel #3/GA TYR 23
> color #3/GA:23 yellow
> swapaa #3/GA:24 GLY
Using Dunbrack library
Swapping mutadedModel #3/GA ALA 24 to GLY
> color #3/GA:24 yellow
> swapaa #3/GA:25 TRP
Using Dunbrack library
mutadedModel #3/GA TYR 25: phi -99.9, psi 150.6 trans
Applying TRP rotamer (chi angles: 58.7 138.2) to mutadedModel #3/GA TRP 25
> color #3/GA:25 yellow
> swapaa #3/GA:28 THR
Using Dunbrack library
mutadedModel #3/GA VAL 28: phi -79.9, psi 141.8 trans
Applying THR rotamer (chi angles: -61.0) to mutadedModel #3/GA THR 28
> color #3/GA:28 yellow
> swapaa #3/GA:29 GLU
Using Dunbrack library
mutadedModel #3/GA SER 29: phi -88.8, psi 170.2 trans
Applying GLU rotamer (chi angles: 73.7 -79.6 8.8) to mutadedModel #3/GA GLU 29
> color #3/GA:29 yellow
> swapaa #3/GA:30 GLN
Using Dunbrack library
mutadedModel #3/GA GLU 30: phi -64.0, psi 127.0 trans
Applying GLN rotamer (chi angles: -66.9 -179.0 150.8) to mutadedModel #3/GA
GLN 30
> color #3/GA:30 yellow
> swapaa #3/GA:31 LYS
Using Dunbrack library
mutadedModel #3/GA THR 31: phi -102.7, psi -14.2 trans
Applying LYS rotamer (chi angles: -63.9 -175.4 -70.7 -66.8) to mutadedModel
#3/GA LYS 31
> color #3/GA:31 yellow
> swapaa #3/GA:35 GLU
Using Dunbrack library
mutadedModel #3/GA ILE 35: phi -43.9, psi -61.0 trans
Applying GLU rotamer (chi angles: -67.2 81.7 -1.2) to mutadedModel #3/GA GLU
35
> color #3/GA:35 yellow
> swapaa #3/GA:36 TYR
Using Dunbrack library
mutadedModel #3/GA PHE 36: phi -39.8, psi -35.6 trans
Applying TYR rotamer (chi angles: -72.8 109.9) to mutadedModel #3/GA TYR 36
> color #3/GA:36 yellow
> swapaa #3/GA:37 GLU
Using Dunbrack library
mutadedModel #3/GA SER 37: phi -102.3, psi 162.0 trans
Applying GLU rotamer (chi angles: -64.0 -179.4 -7.3) to mutadedModel #3/GA GLU
37
> color #3/GA:37 yellow
> swapaa #3/GA:40 GLU
Using Dunbrack library
mutadedModel #3/GA SER 40: phi -98.8, psi 160.7 trans
Applying GLU rotamer (chi angles: -61.2 -67.2 -53.2) to mutadedModel #3/GA GLU
40
> color #3/GA:40 yellow
> swapaa #3/GA:41 SER
Using Dunbrack library
mutadedModel #3/GA THR 41: phi -91.8, psi 173.9 trans
Applying SER rotamer (chi angles: 67.3) to mutadedModel #3/GA SER 41
> color #3/GA:41 yellow
> swapaa #3/GA:42 LYS
Using Dunbrack library
mutadedModel #3/GA PRO 42: phi -73.1, psi -17.7 trans
Applying LYS rotamer (chi angles: -64.2 -64.1 -70.5 -68.2) to mutadedModel
#3/GA LYS 42
> color #3/GA:42 yellow
> swapaa #3/GA:43 TYR
Using Dunbrack library
mutadedModel #3/GA ARG 43: phi -83.7, psi none trans
Applying TYR rotamer (chi angles: 63.6 90.2) to mutadedModel #3/GA TYR 43
> color #3/GA:43 yellow
> swapaa #3/GA:45 LYS
Using Dunbrack library
mutadedModel #3/GA ARG 45: phi none, psi 140.5 trans
Applying LYS rotamer (chi angles: -177.2 177.1 179.5 179.9) to mutadedModel
#3/GA LYS 45
> color #3/GA:45 yellow
> swapaa #3/GA:47 ASP
Using Dunbrack library
mutadedModel #3/GA SER 47: phi -117.2, psi 166.1 trans
Applying ASP rotamer (chi angles: 64.4 15.7) to mutadedModel #3/GA ASP 47
> color #3/GA:47 yellow
> swapaa #3/GA:50 LYS
Using Dunbrack library
mutadedModel #3/GA SER 50: phi -108.9, psi 168.3 trans
Applying LYS rotamer (chi angles: 66.0 -176.8 -70.4 -66.4) to mutadedModel
#3/GA LYS 50
> color #3/GA:50 yellow
> swapaa #3/GA:53 ASP
Using Dunbrack library
mutadedModel #3/GA VAL 53: phi -80.7, psi 116.8 trans
Applying ASP rotamer (chi angles: -176.0 -13.8) to mutadedModel #3/GA ASP 53
> color #3/GA:53 yellow
> swapaa #3/GA:54 VAL
Using Dunbrack library
mutadedModel #3/GA SER 54: phi -140.7, psi 75.9 trans
Applying VAL rotamer (chi angles: -68.9) to mutadedModel #3/GA VAL 54
> color #3/GA:54 yellow
> swapaa #3/GA:55 ALA
Using Dunbrack library
Swapping mutadedModel #3/GA GLY 55 to ALA
> color #3/GA:55 yellow
> swapaa #3/GA:57 VAL
Using Dunbrack library
mutadedModel #3/GA ASN 57: phi none, psi 101.3 trans
Applying VAL rotamer (chi angles: 175.9) to mutadedModel #3/GA VAL 57
> color #3/GA:57 yellow
> swapaa #3/GA:58 GLU
Using Dunbrack library
mutadedModel #3/GA VAL 58: phi -62.5, psi 126.9 trans
Applying GLU rotamer (chi angles: -67.8 -178.3 -1.3) to mutadedModel #3/GA GLU
58
> color #3/GA:58 yellow
> swapaa #3/GA:61 TYR
Using Dunbrack library
mutadedModel #3/GA PHE 61: phi -135.3, psi 157.9 trans
Applying TYR rotamer (chi angles: -60.7 89.5) to mutadedModel #3/GA TYR 61
> color #3/GA:61 yellow
> swapaa #3/GA:62 SER
Using Dunbrack library
mutadedModel #3/GA ALA 62: phi -121.6, psi 171.5 trans
Applying SER rotamer (chi angles: 66.6) to mutadedModel #3/GA SER 62
> color #3/GA:62 yellow
> swapaa #3/GA:63 ASP
Using Dunbrack library
mutadedModel #3/GA SER 63: phi -79.9, psi -177.0 trans
Applying ASP rotamer (chi angles: 68.3 72.8) to mutadedModel #3/GA ASP 63
> color #3/GA:63 yellow
> swapaa #3/GA:64 PHE
Using Dunbrack library
mutadedModel #3/GA TYR 64: phi -116.9, psi -18.9 trans
Applying PHE rotamer (chi angles: 65.4 87.2) to mutadedModel #3/GA PHE 64
> color #3/GA:64 yellow
> swapaa #3/GA:65 MET
Using Dunbrack library
mutadedModel #3/GA GLN 65: phi -70.1, psi -23.2 trans
Applying MET rotamer (chi angles: -68.3 -57.9 -66.4) to mutadedModel #3/GA MET
65
> color #3/GA:65 yellow
> swapaa #3/GA:66 GLN
Using Dunbrack library
mutadedModel #3/GA LEU 66: phi -103.5, psi -15.0 trans
Applying GLN rotamer (chi angles: -64.8 178.6 65.4) to mutadedModel #3/GA GLN
66
> color #3/GA:66 yellow
> swapaa #3/GA:67 VAL
Using Dunbrack library
mutadedModel #3/GA THR 67: phi -93.7, psi 156.6 trans
Applying VAL rotamer (chi angles: -60.8) to mutadedModel #3/GA VAL 67
> color #3/GA:67 yellow
> swapaa #3/GA:70 TYR
Using Dunbrack library
mutadedModel #3/GA HIS 70: phi -118.9, psi 60.7 trans
Applying TYR rotamer (chi angles: 61.3 88.8) to mutadedModel #3/GA TYR 70
> color #3/GA:70 yellow
> swapaa #3/GA:71 PHE
Using Dunbrack library
mutadedModel #3/GA TYR 71: phi -72.0, psi 141.0 trans
Applying PHE rotamer (chi angles: -176.2 76.3) to mutadedModel #3/GA PHE 71
> color #3/GA:71 yellow
> swapaa #3/GA:73 ILE
Using Dunbrack library
mutadedModel #3/GA ASP 73: phi -78.6, psi -28.8 trans
Applying ILE rotamer (chi angles: 65.7 171.7) to mutadedModel #3/GA ILE 73
> color #3/GA:73 yellow
> swapaa #3/GA:75 SER
Using Dunbrack library
mutadedModel #3/GA GLU 75: phi -87.1, psi -37.3 trans
Applying SER rotamer (chi angles: 64.4) to mutadedModel #3/GA SER 75
> color #3/GA:75 yellow
> swapaa #3/GA:79 THR
Using Dunbrack library
mutadedModel #3/GA LEU 79: phi -71.7, psi -32.4 trans
Applying THR rotamer (chi angles: 59.6) to mutadedModel #3/GA THR 79
> color #3/GA:79 yellow
> swapaa #3/GA:81 LEU
Using Dunbrack library
mutadedModel #3/GA GLU 81: phi -71.3, psi -27.3 trans
Applying LEU rotamer (chi angles: -174.3 58.9) to mutadedModel #3/GA LEU 81
> color #3/GA:81 yellow
> swapaa #3/GA:82 TYR
Using Dunbrack library
mutadedModel #3/GA PHE 82: phi -74.0, psi -44.1 trans
Applying TYR rotamer (chi angles: -175.9 75.8) to mutadedModel #3/GA TYR 82
> color #3/GA:82 yellow
> swapaa #3/GA:84 MET
Using Dunbrack library
mutadedModel #3/GA LEU 84: phi -69.8, psi -42.8 trans
Applying MET rotamer (chi angles: -68.8 -59.1 -67.3) to mutadedModel #3/GA MET
84
> color #3/GA:84 yellow
> swapaa #3/GA:85 ILE
Using Dunbrack library
mutadedModel #3/GA ASN 85: phi -74.3, psi -36.8 trans
Applying ILE rotamer (chi angles: -67.0 169.0) to mutadedModel #3/GA ILE 85
> color #3/GA:85 yellow
> swapaa #3/GA:86 GLN
Using Dunbrack library
mutadedModel #3/GA ARG 86: phi -62.1, psi -37.6 trans
Applying GLN rotamer (chi angles: -67.8 -63.9 -49.3) to mutadedModel #3/GA GLN
86
> color #3/GA:86 yellow
> swapaa #3/GA:90 LEU
Using Dunbrack library
mutadedModel #3/GA GLU 90: phi -80.2, psi -37.0 trans
Applying LEU rotamer (chi angles: -66.5 174.5) to mutadedModel #3/GA LEU 90
> color #3/GA:90 yellow
> swapaa #3/GA:91 SER
Using Dunbrack library
mutadedModel #3/GA ALA 91: phi -102.1, psi -34.7 trans
Applying SER rotamer (chi angles: 64.1) to mutadedModel #3/GA SER 91
> color #3/GA:91 yellow
> swapaa #3/GA:92 MET
Using Dunbrack library
mutadedModel #3/GA GLN 92: phi -109.1, psi -18.5 trans
Applying MET rotamer (chi angles: -64.1 178.1 69.9) to mutadedModel #3/GA MET
92
> color #3/GA:92 yellow
> swapaa #3/GA:96 PHE
Using Dunbrack library
mutadedModel #3/GA TYR 96: phi -35.7, psi -33.5 trans
Applying PHE rotamer (chi angles: -73.7 48.5) to mutadedModel #3/GA PHE 96
> color #3/GA:96 yellow
> swapaa #3/GA:98 PHE
Using Dunbrack library
mutadedModel #3/GA TRP 98: phi -72.2, psi -43.9 trans
Applying PHE rotamer (chi angles: -175.1 75.2) to mutadedModel #3/GA PHE 98
> color #3/GA:98 yellow
> swapaa #3/GA:99 MET
Using Dunbrack library
mutadedModel #3/GA ARG 99: phi -68.2, psi -72.7 trans
Applying MET rotamer (chi angles: -68.9 -60.6 -67.8) to mutadedModel #3/GA MET
99
> color #3/GA:99 yellow
> swapaa #3/GA:100 HIS
Using Dunbrack library
mutadedModel #3/GA GLN 100: phi -43.8, psi -34.9 trans
Applying HIS rotamer (chi angles: 67.0 -78.4) to mutadedModel #3/GA HIS 100
> color #3/GA:100 yellow
> swapaa #3/GA:103 HIS
Using Dunbrack library
mutadedModel #3/GA PHE 103: phi -65.4, psi -48.6 trans
Applying HIS rotamer (chi angles: -70.7 171.6) to mutadedModel #3/GA HIS 103
> color #3/GA:103 yellow
> swapaa #3/GA:104 LYS
Using Dunbrack library
mutadedModel #3/GA GLU 104: phi -65.0, psi -32.9 trans
Applying LYS rotamer (chi angles: -62.5 -75.3 99.0 -88.6) to mutadedModel
#3/GA LYS 104
> color #3/GA:104 yellow
> swapaa #3/GA:105 SER
Using Dunbrack library
mutadedModel #3/GA ALA 105: phi -67.1, psi -47.8 trans
Applying SER rotamer (chi angles: 63.0) to mutadedModel #3/GA SER 105
> color #3/GA:105 yellow
> swapaa #3/GA:106 ILE
Using Dunbrack library
mutadedModel #3/GA GLU 106: phi -60.4, psi -42.3 trans
Applying ILE rotamer (chi angles: 63.6 171.5) to mutadedModel #3/GA ILE 106
> color #3/GA:106 yellow
> swapaa #3/GA:107 GLU
Using Dunbrack library
mutadedModel #3/GA LEU 107: phi -60.1, psi -43.3 trans
Applying GLU rotamer (chi angles: -177.3 177.0 -1.2) to mutadedModel #3/GA GLU
107
> color #3/GA:107 yellow
> swapaa #3/GA:110 ASP
Using Dunbrack library
mutadedModel #3/GA LEU 110: phi -51.6, psi -38.9 trans
Applying ASP rotamer (chi angles: -174.3 64.3) to mutadedModel #3/GA ASP 110
> color #3/GA:110 yellow
> swapaa #3/GA:111 ASP
Using Dunbrack library
mutadedModel #3/GA GLU 111: phi -85.4, psi -24.8 trans
Applying ASP rotamer (chi angles: -65.3 -30.9) to mutadedModel #3/GA ASP 111
> color #3/GA:111 yellow
> swapaa #3/GA:112 SER
Using Dunbrack library
mutadedModel #3/GA ALA 112: phi -73.5, psi -29.7 trans
Applying SER rotamer (chi angles: 65.8) to mutadedModel #3/GA SER 112
> color #3/GA:112 yellow
> swapaa #3/GA:113 ILE
Using Dunbrack library
mutadedModel #3/GA LEU 113: phi -66.1, psi -48.9 trans
Applying ILE rotamer (chi angles: -66.5 168.5) to mutadedModel #3/GA ILE 113
> color #3/GA:113 yellow
> swapaa #3/GA:114 ARG
Using Dunbrack library
mutadedModel #3/GA PHE 114: phi -53.7, psi -28.4 trans
Applying ARG rotamer (chi angles: 68.1 177.4 65.8 -106.4) to mutadedModel
#3/GA ARG 114
> color #3/GA:114 yellow
> swapaa #3/GA:115 LYS
Using Dunbrack library
mutadedModel #3/GA VAL 115: phi -81.2, psi -60.4 trans
Applying LYS rotamer (chi angles: -70.3 -176.8 174.9 65.8) to mutadedModel
#3/GA LYS 115
> color #3/GA:115 yellow
> swapaa #3/GA:117 ALA
Using Dunbrack library
Swapping mutadedModel #3/GA GLU 117 to ALA
> color #3/GA:117 yellow
> swapaa #3/GA:118 TRP
Using Dunbrack library
mutadedModel #3/GA ALA 118: phi -72.7, psi 4.7 trans
Applying TRP rotamer (chi angles: -178.6 25.7) to mutadedModel #3/GA TRP 118
> color #3/GA:118 yellow
> swapaa #3/GA:119 TRP
Using Dunbrack library
mutadedModel #3/GA ARG 119: phi -87.0, psi 163.7 trans
Applying TRP rotamer (chi angles: 58.2 63.0) to mutadedModel #3/GA TRP 119
> color #3/GA:119 yellow
> color #3/GA:120 cyan
> color #3/GA:121 cyan
> color #3/GA:122 cyan
> select #3/GQ
540 atoms, 542 bonds, 73 residues, 1 model selected
> bond #3/GQ:35@C #3/GQ:36@N reasonable false
Created 0 bonds
> bond #3/GQ:36@C #3/GQ:37@N reasonable false
Created 0 bonds
> bond #3/GQ:37@C #3/GQ:38@N reasonable false
Created 0 bonds
> bond #3/GQ:38@C #3/GQ:39@N reasonable false
Created 1 bond
> bond #3/GQ:74@C #3/GQ:75@N reasonable false
Created 0 bonds
> bond #3/GQ:75@C #3/GQ:76@N reasonable false
Created 1 bond
> bond #3/GQ:73@C #3/GQ:74@N reasonable false
Created 1 bond
> bond #3/GQ:76@C #3/GQ:77@N reasonable false
Created 1 bond
> bond #3/GQ:34@C #3/GQ:35@N reasonable false
Created 1 bond
> bond #3/GQ:72@C #3/GQ:73@N reasonable false
Created 1 bond
> bond #3/GQ:77@C #3/GQ:78@N reasonable false
Created 1 bond
> bond #3/GQ:39@C #3/GQ:40@N reasonable false
Created 0 bonds
> bond #3/GQ:40@C #3/GQ:41@N reasonable false
Created 0 bonds
> bond #3/GQ:41@C #3/GQ:42@N reasonable false
Created 0 bonds
> bond #3/GQ:42@C #3/GQ:43@N reasonable false
Created 0 bonds
> bond #3/GQ:43@C #3/GQ:44@N reasonable false
Created 0 bonds
> bond #3/GQ:44@C #3/GQ:45@N reasonable false
Created 0 bonds
> bond #3/GQ:45@C #3/GQ:46@N reasonable false
Created 0 bonds
> bond #3/GQ:46@C #3/GQ:47@N reasonable false
Created 0 bonds
> bond #3/GQ:47@C #3/GQ:48@N reasonable false
Created 0 bonds
> bond #3/GQ:48@C #3/GQ:49@N reasonable false
Created 0 bonds
> bond #3/GQ:49@C #3/GQ:50@N reasonable false
Created 0 bonds
> bond #3/GQ:50@C #3/GQ:51@N reasonable false
Created 0 bonds
> bond #3/GQ:51@C #3/GQ:52@N reasonable false
Created 0 bonds
> bond #3/GQ:52@C #3/GQ:53@N reasonable false
Created 0 bonds
> bond #3/GQ:53@C #3/GQ:54@N reasonable false
Created 0 bonds
> bond #3/GQ:54@C #3/GQ:55@N reasonable false
Created 0 bonds
> bond #3/GQ:55@C #3/GQ:56@N reasonable false
Created 0 bonds
> bond #3/GQ:56@C #3/GQ:57@N reasonable false
Created 0 bonds
> bond #3/GQ:57@C #3/GQ:58@N reasonable false
Created 0 bonds
> bond #3/GQ:58@C #3/GQ:59@N reasonable false
Created 0 bonds
> bond #3/GQ:59@C #3/GQ:60@N reasonable false
Created 0 bonds
> bond #3/GQ:60@C #3/GQ:61@N reasonable false
Created 0 bonds
> bond #3/GQ:61@C #3/GQ:62@N reasonable false
Created 0 bonds
> bond #3/GQ:62@C #3/GQ:63@N reasonable false
Created 0 bonds
> bond #3/GQ:63@C #3/GQ:64@N reasonable false
Created 0 bonds
> bond #3/GQ:64@C #3/GQ:65@N reasonable false
Created 0 bonds
> bond #3/GQ:65@C #3/GQ:66@N reasonable false
Created 0 bonds
> bond #3/GQ:66@C #3/GQ:67@N reasonable false
Created 0 bonds
> bond #3/GQ:67@C #3/GQ:68@N reasonable false
Created 0 bonds
> bond #3/GQ:68@C #3/GQ:69@N reasonable false
Created 0 bonds
> bond #3/GQ:69@C #3/GQ:70@N reasonable false
Created 0 bonds
> bond #3/GQ:70@C #3/GQ:71@N reasonable false
Created 0 bonds
> bond #3/GQ:71@C #3/GQ:72@N reasonable false
Created 1 bond
> bond #3/GQ:78@C #3/GQ:79@N reasonable false
Created 0 bonds
> bond #3/GQ:79@C #3/GQ:80@N reasonable false
Created 0 bonds
> bond #3/GQ:80@C #3/GQ:81@N reasonable false
Created 0 bonds
> bond #3/GQ:81@C #3/GQ:82@N reasonable false
Created 0 bonds
> bond #3/GQ:82@C #3/GQ:83@N reasonable false
Created 0 bonds
> bond #3/GQ:83@C #3/GQ:84@N reasonable false
Created 0 bonds
> bond #3/GQ:84@C #3/GQ:85@N reasonable false
Created 0 bonds
> bond #3/GQ:13@C #3/GQ:14@N reasonable false
Created 0 bonds
> bond #3/GQ:14@C #3/GQ:15@N reasonable false
Created 0 bonds
> bond #3/GQ:15@C #3/GQ:16@N reasonable false
Created 0 bonds
> bond #3/GQ:16@C #3/GQ:17@N reasonable false
Created 0 bonds
> bond #3/GQ:17@C #3/GQ:18@N reasonable false
Created 0 bonds
> bond #3/GQ:18@C #3/GQ:19@N reasonable false
Created 0 bonds
> bond #3/GQ:19@C #3/GQ:20@N reasonable false
Created 0 bonds
> bond #3/GQ:20@C #3/GQ:21@N reasonable false
Created 0 bonds
> bond #3/GQ:21@C #3/GQ:22@N reasonable false
Created 0 bonds
> bond #3/GQ:22@C #3/GQ:23@N reasonable false
Created 0 bonds
> bond #3/GQ:23@C #3/GQ:24@N reasonable false
Created 0 bonds
> bond #3/GQ:24@C #3/GQ:25@N reasonable false
Created 0 bonds
> bond #3/GQ:25@C #3/GQ:26@N reasonable false
Created 0 bonds
> bond #3/GQ:26@C #3/GQ:27@N reasonable false
Created 0 bonds
> bond #3/GQ:27@C #3/GQ:28@N reasonable false
Created 0 bonds
> bond #3/GQ:28@C #3/GQ:29@N reasonable false
Created 0 bonds
> bond #3/GQ:29@C #3/GQ:30@N reasonable false
Created 0 bonds
> bond #3/GQ:30@C #3/GQ:31@N reasonable false
Created 0 bonds
> bond #3/GQ:31@C #3/GQ:32@N reasonable false
Created 0 bonds
> bond #3/GQ:32@C #3/GQ:33@N reasonable false
Created 0 bonds
> bond #3/GQ:33@C #3/GQ:34@N reasonable false
Created 1 bond
> swapaa #3/GQ:13 MET
Using Dunbrack library
mutadedModel #3/GQ GLY 13: phi none, psi 144.5 trans
Applying MET rotamer (chi angles: -78.6 67.3 73.0) to mutadedModel #3/GQ MET
13
> color #3/GQ:13 yellow
> swapaa #3/GQ:14 THR
Using Dunbrack library
mutadedModel #3/GQ ILE 14: phi 156.8, psi 46.1 trans
Applying THR rotamer (chi angles: -173.3) to mutadedModel #3/GQ THR 14
> color #3/GQ:14 yellow
> swapaa #3/GQ:19 LYS
Using Dunbrack library
mutadedModel #3/GQ THR 19: phi -106.1, psi 134.5 trans
Applying LYS rotamer (chi angles: -163.8 -88.4 117.5 177.3) to mutadedModel
#3/GQ LYS 19
> color #3/GQ:19 yellow
> swapaa #3/GQ:20 GLY
Using Dunbrack library
Swapping mutadedModel #3/GQ SER 20 to GLY
> color #3/GQ:20 yellow
> swapaa #3/GQ:22 VAL
Using Dunbrack library
mutadedModel #3/GQ ASN 22: phi -68.5, psi 112.0 trans
Applying VAL rotamer (chi angles: 177.0) to mutadedModel #3/GQ VAL 22
> color #3/GQ:22 yellow
> swapaa #3/GQ:25 MET
Using Dunbrack library
mutadedModel #3/GQ ASN 25: phi -65.8, psi 70.9 trans
Applying MET rotamer (chi angles: -177.5 179.3 71.4) to mutadedModel #3/GQ MET
25
> color #3/GQ:25 yellow
> swapaa #3/GQ:26 LYS
Using Dunbrack library
mutadedModel #3/GQ THR 26: phi -117.6, psi 165.5 trans
Applying LYS rotamer (chi angles: 65.4 -176.8 -70.4 -66.0) to mutadedModel
#3/GQ LYS 26
> color #3/GQ:26 yellow
> swapaa #3/GQ:27 PHE
Using Dunbrack library
mutadedModel #3/GQ TYR 27: phi -120.8, psi 33.2 trans
Applying PHE rotamer (chi angles: 56.2 88.2) to mutadedModel #3/GQ PHE 27
> color #3/GQ:27 yellow
> swapaa #3/GQ:28 ASP
Using Dunbrack library
mutadedModel #3/GQ THR 28: phi -126.2, psi 120.0 trans
Applying ASP rotamer (chi angles: -175.9 -11.3) to mutadedModel #3/GQ ASP 28
> color #3/GQ:28 yellow
> swapaa #3/GQ:29 SER
Using Dunbrack library
mutadedModel #3/GQ VAL 29: phi -136.5, psi 157.5 trans
Applying SER rotamer (chi angles: 64.6) to mutadedModel #3/GQ SER 29
> color #3/GQ:29 yellow
> swapaa #3/GQ:30 LEU
Using Dunbrack library
mutadedModel #3/GQ THR 30: phi -80.2, psi 111.4 trans
Applying LEU rotamer (chi angles: -179.4 62.6) to mutadedModel #3/GQ LEU 30
> color #3/GQ:30 yellow
> swapaa #3/GQ:31 LYS
Using Dunbrack library
mutadedModel #3/GQ PHE 31: phi -81.4, psi 130.6 trans
Applying LYS rotamer (chi angles: -65.5 -177.3 -176.9 -64.6) to mutadedModel
#3/GQ LYS 31
> color #3/GQ:31 yellow
> swapaa #3/GQ:33 ALA
Using Dunbrack library
Swapping mutadedModel #3/GQ SER 33 to ALA
> color #3/GQ:33 yellow
> swapaa #3/GQ:34 TYR
Using Dunbrack library
mutadedModel #3/GQ PHE 34: phi 30.6, psi 35.4 trans
Applying TYR rotamer (chi angles: -59.7 79.1) to mutadedModel #3/GQ TYR 34
> color #3/GQ:34 yellow
> swapaa #3/GQ:35 VAL
Using Dunbrack library
mutadedModel #3/GQ ASN 35: phi -135.9, psi 104.6 trans
Applying VAL rotamer (chi angles: -179.8) to mutadedModel #3/GQ VAL 35
> color #3/GQ:35 yellow
> swapaa #3/GQ:37 LYS
Using Dunbrack library
mutadedModel #3/GQ ARG 37: phi -79.6, psi 136.8 trans
Applying LYS rotamer (chi angles: -62.9 -72.4 100.3 78.3) to mutadedModel
#3/GQ LYS 37
> color #3/GQ:37 yellow
> swapaa #3/GQ:39 PHE
Using Dunbrack library
mutadedModel #3/GQ ASN 39: phi -60.1, psi -20.0 trans
Applying PHE rotamer (chi angles: 72.0 88.6) to mutadedModel #3/GQ PHE 39
> color #3/GQ:39 yellow
> swapaa #3/GQ:41 THR
Using Dunbrack library
mutadedModel #3/GQ ILE 41: phi -79.5, psi -50.2 trans
Applying THR rotamer (chi angles: 58.9) to mutadedModel #3/GQ THR 41
> color #3/GQ:41 yellow
> swapaa #3/GQ:42 GLN
Using Dunbrack library
mutadedModel #3/GQ LYS 42: phi -51.2, psi -61.0 trans
Applying GLN rotamer (chi angles: -70.1 176.3 35.5) to mutadedModel #3/GQ GLN
42
> color #3/GQ:42 yellow
> swapaa #3/GQ:43 PHE
Using Dunbrack library
mutadedModel #3/GQ SER 43: phi -6.0, psi -75.0 trans
Applying PHE rotamer (chi angles: -178.6 77.3) to mutadedModel #3/GQ PHE 43
> color #3/GQ:43 yellow
> swapaa #3/GQ:44 PHE
Using Dunbrack library
mutadedModel #3/GQ ARG 44: phi -68.3, psi -31.5 trans
Applying PHE rotamer (chi angles: -73.1 104.8) to mutadedModel #3/GQ PHE 44
> color #3/GQ:44 yellow
> swapaa #3/GQ:45 VAL
Using Dunbrack library
mutadedModel #3/GQ THR 45: phi -89.0, psi -41.9 trans
Applying VAL rotamer (chi angles: 174.9) to mutadedModel #3/GQ VAL 45
> color #3/GQ:45 yellow
> swapaa #3/GQ:47 GLY
Using Dunbrack library
Swapping mutadedModel #3/GQ ALA 47 to GLY
> color #3/GQ:47 yellow
> swapaa #3/GQ:49 TRP
Using Dunbrack library
mutadedModel #3/GQ ARG 49: phi -76.6, psi -36.0 trans
Applying TRP rotamer (chi angles: -178.2 -121.6) to mutadedModel #3/GQ TRP 49
> color #3/GQ:49 yellow
> swapaa #3/GQ:52 SER
Using Dunbrack library
mutadedModel #3/GQ GLU 52: phi -71.4, psi -18.4 trans
Applying SER rotamer (chi angles: 68.0) to mutadedModel #3/GQ SER 52
> color #3/GQ:52 yellow
> swapaa #3/GQ:53 ASN
Using Dunbrack library
mutadedModel #3/GQ ASP 53: phi -80.3, psi -30.4 trans
Applying ASN rotamer (chi angles: -71.8 -0.4) to mutadedModel #3/GQ ASN 53
> color #3/GQ:53 yellow
> swapaa #3/GQ:54 MET
Using Dunbrack library
mutadedModel #3/GQ PHE 54: phi -106.5, psi -12.5 trans
Applying MET rotamer (chi angles: -64.0 -61.6 -69.6) to mutadedModel #3/GQ MET
54
> color #3/GQ:54 yellow
> swapaa #3/GQ:56 THR
Using Dunbrack library
mutadedModel #3/GQ LEU 56: phi -63.8, psi -29.7 trans
Applying THR rotamer (chi angles: 59.1) to mutadedModel #3/GQ THR 56
> color #3/GQ:56 yellow
> swapaa #3/GQ:57 ASN
Using Dunbrack library
mutadedModel #3/GQ ILE 57: phi -76.7, psi -34.9 trans
Applying ASN rotamer (chi angles: -171.3 -2.9) to mutadedModel #3/GQ ASN 57
> color #3/GQ:57 yellow
> swapaa #3/GQ:58 PHE
Using Dunbrack library
mutadedModel #3/GQ TYR 58: phi -75.2, psi -28.7 trans
Applying PHE rotamer (chi angles: -71.7 130.8) to mutadedModel #3/GQ PHE 58
> color #3/GQ:58 yellow
> swapaa #3/GQ:59 VAL
Using Dunbrack library
mutadedModel #3/GQ ILE 59: phi -72.7, psi -37.5 trans
Applying VAL rotamer (chi angles: 173.1) to mutadedModel #3/GQ VAL 59
> color #3/GQ:59 yellow
> swapaa #3/GQ:60 ILE
Using Dunbrack library
mutadedModel #3/GQ LEU 60: phi -52.1, psi -52.8 trans
Applying ILE rotamer (chi angles: -64.9 -62.5) to mutadedModel #3/GQ ILE 60
> color #3/GQ:60 yellow
> swapaa #3/GQ:61 GLY
Using Dunbrack library
Swapping mutadedModel #3/GQ ALA 61 to GLY
> color #3/GQ:61 yellow
> swapaa #3/GQ:63 LEU
Using Dunbrack library
mutadedModel #3/GQ THR 63: phi -59.7, psi -24.3 trans
Applying LEU rotamer (chi angles: -67.7 173.8) to mutadedModel #3/GQ LEU 63
> color #3/GQ:63 yellow
> swapaa #3/GQ:64 ILE
Using Dunbrack library
mutadedModel #3/GQ ARG 64: phi -79.4, psi -30.3 trans
Applying ILE rotamer (chi angles: -66.7 169.1) to mutadedModel #3/GQ ILE 64
> color #3/GQ:64 yellow
> swapaa #3/GQ:68 ALA
Using Dunbrack library
Swapping mutadedModel #3/GQ GLY 68 to ALA
> color #3/GQ:68 yellow
> swapaa #3/GQ:69 ASN
Using Dunbrack library
mutadedModel #3/GQ ILE 69: phi -114.4, psi -7.4 trans
Applying ASN rotamer (chi angles: -66.1 -72.6) to mutadedModel #3/GQ ASN 69
> color #3/GQ:69 yellow
> swapaa #3/GQ:71 GLY
Using Dunbrack library
Swapping mutadedModel #3/GQ ALA 71 to GLY
> color #3/GQ:71 yellow
> swapaa #3/GQ:72 LEU
Using Dunbrack library
mutadedModel #3/GQ ASP 72: phi -23.0, psi 2.6 trans
Applying LEU rotamer (chi angles: -64.8 174.3) to mutadedModel #3/GQ LEU 72
> color #3/GQ:72 yellow
> swapaa #3/GQ:73 SER
Using Dunbrack library
mutadedModel #3/GQ GLY 73: phi -28.8, psi 74.9 trans
Applying SER rotamer (chi angles: 179.0) to mutadedModel #3/GQ SER 73
> color #3/GQ:73 yellow
> swapaa #3/GQ:74 GLY
Using Dunbrack library
Swapping mutadedModel #3/GQ PHE 74 to GLY
> color #3/GQ:74 yellow
> swapaa #3/GQ:75 ALA
Using Dunbrack library
Swapping mutadedModel #3/GQ GLY 75 to ALA
> color #3/GQ:75 yellow
> swapaa #3/GQ:76 TRP
Using Dunbrack library
mutadedModel #3/GQ GLY 76: phi 71.9, psi -26.0 cis
Applying TRP rotamer (chi angles: -63.9 106.5) to mutadedModel #3/GQ TRP 76
> color #3/GQ:76 yellow
> swapaa #3/GQ:77 PRO
Using Dunbrack library
mutadedModel #3/GQ ALA 77: phi -11.6, psi 8.8 trans
Applying PRO rotamer (chi angles: 27.3 -34.5) to mutadedModel #3/GQ PRO 77
> color #3/GQ:77 yellow
> swapaa #3/GQ:78 PRO
Using Dunbrack library
mutadedModel #3/GQ GLY 78: phi -102.3, psi 121.7 trans
Applying PRO rotamer (chi angles: -23.4 35.4) to mutadedModel #3/GQ PRO 78
> color #3/GQ:78 yellow
> swapaa #3/GQ:80 PRO
Using Dunbrack library
mutadedModel #3/GQ LYS 80: phi -29.8, psi -25.7 trans
Applying PRO rotamer (chi angles: -26.4 37.1) to mutadedModel #3/GQ PRO 80
> color #3/GQ:80 yellow
> swapaa #3/GQ:81 HIS
Using Dunbrack library
mutadedModel #3/GQ GLU 81: phi -68.3, psi -23.7 trans
Applying HIS rotamer (chi angles: -172.8 -25.8) to mutadedModel #3/GQ HIS 81
> color #3/GQ:81 yellow
> swapaa #3/GQ:82 SER
Using Dunbrack library
mutadedModel #3/GQ LEU 82: phi -86.2, psi -47.3 trans
Applying SER rotamer (chi angles: -65.4) to mutadedModel #3/GQ SER 82
> color #3/GQ:82 yellow
> swapaa #3/GQ:83 LEU
Using Dunbrack library
mutadedModel #3/GQ PHE 83: phi -111.3, psi -20.9 trans
Applying LEU rotamer (chi angles: -60.7 176.5) to mutadedModel #3/GQ LEU 83
> color #3/GQ:83 yellow
> swapaa #3/GQ:84 HIS
Using Dunbrack library
mutadedModel #3/GQ ALA 84: phi -64.0, psi 2.6 trans
Applying HIS rotamer (chi angles: -176.8 -22.7) to mutadedModel #3/GQ HIS 84
> color #3/GQ:84 yellow
> swapaa #3/GQ:85 PRO
Using Dunbrack library
mutadedModel #3/GQ GLY 85: phi -83.8, psi none trans
Applying PRO rotamer (chi angles: 27.0 -34.6) to mutadedModel #3/GQ PRO 85
> color #3/GQ:85 yellow
> close #3
> close #2
> runscript /Users/rafaelrocha/Library/CloudStorage/OneDrive-
> Personal/GitHub/KRSPs/modelangeloScripts/renameAndRenumberChainsChimeraX.py
> #1 alignmentsMod1Mod.txt
['1', '8']
['1', '8']
['11']
['1', '1']
['11']
['1', '1']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '4']
['1', '4']
['1', '15']
['1', '15']
['11']
['1', '1']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['1', '28']
['1', '28']
['1', '15']
['1', '15']
['7', '15']
['7', '15']
['2', '44']
['2', '44']
['1', '7']
['1', '7']
['1', '8']
['1', '8']
['1', '13']
['1', '13']
['11']
['1', '1']
['1', '31']
['1', '31']
['12']
['1', '2']
['6', '22']
['6', '22']
['5', '21']
['5', '21']
['3', '140']
['3', '140']
['1', '3']
['1', '3']
['1', '8']
['1', '8']
['2', '18']
['2', '18']
['1', '7']
['1', '7']
['7', '12']
['7', '12']
['1', '10']
['1', '10']
['12']
['1', '2']
['1', '10']
['1', '10']
['4', '63']
['4', '63']
['9', '11']
['9', '11']
['11']
['1', '1']
['1', '5']
['1', '5']
['5', '33']
['5', '33']
['1', '4']
['1', '4']
['1', '74']
['1', '74']
['3', '18']
['3', '18']
['2', '22']
['2', '22']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['2', '81']
['2', '81']
['1', '8']
['1', '8']
['1', '5']
['1', '5']
['14', '47']
['14', '47']
['1', '5']
['1', '5']
['1', '3']
['1', '3']
['11']
['1', '1']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '5']
['1', '5']
['1', '4']
['1', '4']
['1', '7']
['1', '7']
['1', '14']
['1', '14']
['1', '25']
['1', '25']
['1', '20']
['1', '20']
['1', '8']
['1', '8']
['11']
['1', '1']
['12']
['1', '2']
['12']
['1', '2']
['1', '18']
['1', '18']
['1', '70']
['1', '70']
['12']
['1', '2']
['12']
['1', '2']
['1', '12']
['1', '12']
['1', '5']
['1', '5']
['1', '14']
['1', '14']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '7']
['1', '7']
['1', '32']
['1', '32']
['11']
['1', '1']
['12']
['1', '2']
['9', '18']
['9', '18']
['11']
['1', '1']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '5']
['1', '5']
['12']
['1', '2']
['1', '20']
['1', '20']
['1', '7']
['1', '7']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['1', '3']
['1', '3']
['1', '12']
['1', '12']
['1', '3']
['1', '3']
['2', '15']
['2', '15']
['11']
['1', '1']
['11']
['1', '1']
['1', '153']
['1', '153']
['11']
['1', '1']
['1', '39']
['1', '39']
['1', '27']
['1', '27']
['1', '37']
['1', '37']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '56']
['1', '56']
['1', '9']
['1', '9']
['1', '4']
['1', '4']
['12']
['1', '2']
['1', '3']
['1', '3']
['12']
['1', '2']
['1', '10']
['1', '10']
['1', '4']
['1', '4']
['11']
['1', '1']
['12']
['1', '2']
['1', '30']
['1', '30']
['3', '45']
['3', '45']
['1', '9']
['1', '9']
['12']
['1', '2']
['1', '59']
['1', '59']
['1', '13']
['1', '13']
['1', '34']
['1', '34']
['1', '5']
['1', '5']
['3', '25']
['3', '25']
['1', '4']
['1', '4']
['1', '3']
['1', '3']
['6', '20']
['6', '20']
['1', '11']
['1', '11']
['3', '39']
['3', '39']
['1', '27']
['1', '27']
['1', '21']
['1', '21']
['11']
['1', '1']
['1', '4']
['1', '4']
['2', '33']
['2', '33']
['11']
['1', '1']
['11']
['1', '1']
['12']
['1', '2']
['11']
['1', '1']
['11']
['1', '1']
['1', '8']
['1', '8']
LtaP35.1590.mRNA_A
LtaP35.1450.mRNA_A
LtaP07.0060.mRNA_A
LtaP32.3800.mRNA_A
LtaP13.0770.mRNA_A
sp|P14548.2|CYB_LEITA_A
LtaP35.0210.mRNA_A
GET91263.1_A
LtaP35.0250.mRNA_A
GET89654.1_A
> combine #1 close false name renamedAndRenumberedModel
===== Log before crash end =====
Log:
> set selectionWidth 4
Done loading forcefield
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> isolde set simFidelityMode Medium/Medium
ISOLDE: setting sim fidelity mode to Medium/Medium
nonbonded_cutoff_distance = 0.900000
use_gbsa = True
gbsa_cutoff = 1.100000
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,6
Model Number: Z1AX002ENFN/A
Chip: Apple M3 Pro
Total Number of Cores: 12 (6 performance and 6 efficiency)
Memory: 36 GB
System Firmware Version: 10151.140.19
OS Loader Version: 10151.140.19
Software:
System Software Overview:
System Version: macOS 14.6 (23G80)
Kernel Version: Darwin 23.6.0
Time since boot: 4 days, 2 hours, 21 minutes
Graphics/Displays:
Apple M3 Pro:
Chipset Model: Apple M3 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 18
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL U3223QE:
Resolution: 6720 x 3780
UI Looks like: 3360 x 1890 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
ASUS VG278HE:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.23.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.8.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
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