Opened 16 months ago

Last modified 9 months ago

#15475 accepted enhancement

Unable to synchronize structure colouring with sequence colouring

Reported by: isaphan@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc: afmill3r2@…
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

For example: 
- load structure, color chain A by B-factor.
- load chain A sequence: residues are coloured by secondary structure elements by default. Ability to color residues by B-factor instead to match the structure display is missing.

There was a work around on Chimera that cannot yet be implemented in ChimeraX, see https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/thread/3ROKKQ2C3Z4LUWP7DYM7PICPL7RMAXDJ/

This is more of a new feature request than a bug. Especially for analyzing models, it would be extremely helpful to display exactly on the sequence where the high/low quality regions are located. Same for hydrophobic/hydrophilic surface residues as calculated by the surface coloring tool. We use these types of information mainly to design constructs for protein expression.

Thank you for your consideration,

Isabelle



Change History (2)

comment:1 by pett, 16 months ago

Component: UnassignedSequence
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Type: defectenhancement

comment:2 by pett, 9 months ago

Cc: afmill3r2@… added
Note: See TracTickets for help on using tickets.