Opened 16 months ago

Closed 16 months ago

#15470 closed defect (duplicate)

Cannot restore session in daily build

Reported by: clara.lee@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Sessions Version:
Keywords: Cc: chimera-programmers
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-13.2.1-arm64-arm-64bit
ChimeraX Version: 1.9.dev202406210539 (2024-06-21 05:39:10 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9.dev202406210539 (2024-06-21)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show Registration

Thank you for registering your copy of ChimeraX. By providing the information
requested you will be helping us document the impact this software is having
in the scientific community. The information you supplied will only be used
for reporting summary usage statistics; no individual data will be released.  
clara.lee@gladstone.ucsf.edu has been invited to the ChimeraX announcements
list  

> open
> /Users/claralee/Downloads/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
> format pdb

Chain information for
output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1  
---  
Chain | Description  
B | No description available  
C | No description available  
  

> alphafold contacts /B toAtoms /C distance 8

Structure output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1
does not have PAE data opened  

> close

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open
> /Users/claralee/Downloads/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
> format pdb

Chain information for
output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1  
---  
Chain | Description  
B | No description available  
C | No description available  
  

> close

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open "/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs"

can't find bundle info {'name': 'Log', 'version': 2, 'shown': True, 'log
data': {'version': 1, 'date': 'Fri Jun 21 13:03:49 2024', 'contents': 'UCSF
ChimeraX version: 1.6.1 (2023-05-09)<br>© 2016-2023 Regents of the University
of California. All rights reserved.<br><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/open.html">open</a>
/Users/claralee/bg.cxs format session</div><div class="cxcmd_as_cmd"><a
href="cxcmd:open /Users/claralee/bg.cxs format session">open
/Users/claralee/bg.cxs format session</a></div></div><details
style="background-color: #ebf5fb"><summary>Log from Mon May 22 20:19:41
2023</summary>UCSF ChimeraX version: 1.6.1 (2023-05-09)<br>\n© 2016-2023
Regents of the University of California. All rights reserved.<br>\n<a
href="cxcmd:help help:credits.html">How to cite UCSF ChimeraX</a><br/><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/open.html">open</a>
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb</div><div class="cxcmd_as_cmd"><a href="cxcmd:open
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb">open
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb</a></div></div><table border=1 cellpadding=4 cellspacing=0>\n
<thead>\n <tr>\n <th colspan="2">Chain information for
output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1</th>\n
</tr>\n <tr>\n <th>Chain</th>\n <th>Description</th>\n\n </tr>\n </thead>\n
<tbody>\n <tr>\n <td style="text-align:center"><a title="Select chain"
href="cxcmd:select /B:1-1362">B</a></td>\n <td><a title="Show sequence"
href="cxcmd:sequence chain #1/B">No description available</a></td>\n\n </tr>\n
<tr>\n <td style="text-align:center"><a title="Select chain"
href="cxcmd:select /C:1-443">C</a></td>\n <td><a title="Show sequence"
href="cxcmd:sequence chain #1/C">No description available</a></td>\n\n </tr>\n
</tbody>\n</table><br/><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/sequence.html#chain">sequence chain</a>
#1/B</div><div class="cxcmd_as_cmd"><a href="cxcmd:sequence chain
#1/B">sequence chain #1/B</a></div></div>Alignment identifier is 1/B<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-45</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-45">select
/B:1-45</a></div></div>318 atoms, 322 bonds, 45 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-889</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-889">select
/B:1-889</a></div></div>6934 atoms, 7146 bonds, 889 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-2</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-2">select
/B:1-2</a></div></div>14 atoms, 13 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-697</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-697">select
/B:1-697</a></div></div>5473 atoms, 5613 bonds, 697 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1320-1362</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1320-1362">select
/B:1320-1362</a></div></div>368 atoms, 370 bonds, 43 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B">select /B</a></div></div>10708
atoms, 11041 bonds, 1362 residues, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel medium blue</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel medium blue">color sel medium
blue</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:285</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:285">select
/B:285</a></div></div>9 atoms, 8 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:285-290</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:285-290">select
/B:285-290</a></div></div>49 atoms, 48 bonds, 6 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-443">select
/C:1-443</a></div></div>3134 atoms, 3218 bonds, 443 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-443">select
/C:1-443</a></div></div>3134 atoms, 3218 bonds, 443 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Show
Sequence Viewer&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool
show &quot;Show Sequence Viewer&quot;">ui tool show &quot;Show Sequence
Viewer&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/sequence.html#chain">sequence chain</a> /C</div><div
class="cxcmd_as_cmd"><a href="cxcmd:sequence chain /C">sequence chain
/C</a></div></div>Alignment identifier is 1/C<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-2</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-2">select
/C:1-2</a></div></div>20 atoms, 20 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C">select /C</a></div></div>3134
atoms, 3218 bonds, 443 residues, 1 model selected<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/color.html">color</a> sel
red</div><div class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:157-158</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:157-158">select
/C:157-158</a></div></div>18 atoms, 18 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:157-161</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:157-161">select
/C:157-161</a></div></div>37 atoms, 38 bonds, 5 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1">select /C:1</a></div></div>8
atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-114</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-114">select
/C:1-114</a></div></div>745 atoms, 771 bonds, 114 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:125</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:125">select
/C:125</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:125-126</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:125-126">select
/C:125-126</a></div></div>10 atoms, 9 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:73-75</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:73-75">select
/C:73-75</a></div></div>14 atoms, 13 bonds, 3 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-75</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-75">select
/C:1-75</a></div></div>480 atoms, 494 bonds, 75 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel orange red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel orange red">color sel orange
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text TAD1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text TAD1">label sel text
TAD1</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76">select
/C:76</a></div></div>6 atoms, 5 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76">select
/C:76</a></div></div>6 atoms, 5 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:131">select
/C:131</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76-131">select
/C:76-131</a></div></div>363 atoms, 374 bonds, 56 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel purple</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel purple">color sel
purple</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132-183</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132-183">select
/C:132-183</a></div></div>343 atoms, 353 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179">select
/C:179</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132-179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132-179">select
/C:132-179</a></div></div>321 atoms, 330 bonds, 48 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel cyan</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel cyan">color sel
cyan</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text TAD2</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text TAD2">label sel text
TAD2</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-180</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-180">select
/C:179-180</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-230</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-230">select
/C:179-230</a></div></div>391 atoms, 403 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179">select
/C:179</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-230</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-230">select
/C:179-230</a></div></div>391 atoms, 403 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:216</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:216">select
/C:216</a></div></div>11 atoms, 10 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-216</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-216">select
/C:179-216</a></div></div>285 atoms, 294 bonds, 38 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel light sea green</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel light sea green">color sel light
sea green</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217">select
/C:217</a></div></div>9 atoms, 8 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217-268</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217-268">select
/C:217-268</a></div></div>409 atoms, 417 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:241-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:241-242">select
/C:241-242</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217-242">select
/C:217-242</a></div></div>195 atoms, 199 bonds, 26 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel lime</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel lime">color sel
lime</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text Zn1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text Zn1">label sel text
Zn1</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:241-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:241-242">select
/C:241-242</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:242-279</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:242-279">select
/C:242-279</a></div></div>293 atoms, 296 bonds, 38 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:271-272</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:271-272">select
/C:271-272</a></div></div>12 atoms, 11 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:240-271</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:240-271">select
/C:240-271</a></div></div>251 atoms, 254 bonds, 32 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel yellow</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel yellow">color sel
yellow</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:272-273</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:272-273">select
/C:272-273</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:272-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:272-443">select
/C:272-443</a></div></div>1263 atoms, 1291 bonds, 172 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:107-108</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:107-108">select
/C:107-108</a></div></div>22 atoms, 22 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:107-109</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:107-109">select
/C:107-109</a></div></div>28 atoms, 28 bonds, 3 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Color
Key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool show
&quot;Color Key&quot;">ui tool show &quot;Color Key&quot;</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right &quot;color
key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
&quot;color key&quot;">ui mousemode right &quot;color
key&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right
translate</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
translate">ui mousemode right translate</a></div></div><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/undo.html">undo</a></div><div
class="cxcmd_as_cmd"><a href="cxcmd:undo">undo</a></div></div>[Repeated 1
time(s)]<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Color
Key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool show
&quot;Color Key&quot;">ui tool show &quot;Color Key&quot;</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right &quot;color
key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
&quot;color key&quot;">ui mousemode right &quot;color
key&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/key.html#delete">key delete</a></div><div
class="cxcmd_as_cmd"><a href="cxcmd:key delete">key delete</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right
translate</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
translate">ui mousemode right translate</a></div></div><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-2</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-2">select
/C:1-2</a></div></div>20 atoms, 20 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-60</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-60">select
/C:1-60</a></div></div>406 atoms, 420 bonds, 60 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:130-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:130-131">select
/C:130-131</a></div></div>10 atoms, 9 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-131">select
/C:1-131</a></div></div>843 atoms, 869 bonds, 131 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:308</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:308">select
/C:308</a></div></div>7 atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:308</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:308">select
/C:308</a></div></div>7 atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/save.html">save</a> /Users/claralee/bg.cxs</div><div
class="cxcmd_as_cmd"><a href="cxcmd:save /Users/claralee/bg.cxs">save
/Users/claralee/bg.cxs</a></div></div><p>&mdash;&mdash;&mdash; End of log from
Mon May 22 20:19:41 2023 &mdash;&mdash;&mdash;</p></details>opened ChimeraX
session<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/save.html">save</a>
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;</div><div
class="cxcmd_as_cmd"><a href="cxcmd:save
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;">save
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;</a></div></div>'}}  

restore_snapshot for "Log" returned None  

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open "/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs" format session

can't find bundle info {'name': 'Log', 'version': 2, 'shown': True, 'log
data': {'version': 1, 'date': 'Fri Jun 21 13:03:49 2024', 'contents': 'UCSF
ChimeraX version: 1.6.1 (2023-05-09)<br>© 2016-2023 Regents of the University
of California. All rights reserved.<br><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/open.html">open</a>
/Users/claralee/bg.cxs format session</div><div class="cxcmd_as_cmd"><a
href="cxcmd:open /Users/claralee/bg.cxs format session">open
/Users/claralee/bg.cxs format session</a></div></div><details
style="background-color: #ebf5fb"><summary>Log from Mon May 22 20:19:41
2023</summary>UCSF ChimeraX version: 1.6.1 (2023-05-09)<br>\n© 2016-2023
Regents of the University of California. All rights reserved.<br>\n<a
href="cxcmd:help help:credits.html">How to cite UCSF ChimeraX</a><br/><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/open.html">open</a>
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb</div><div class="cxcmd_as_cmd"><a href="cxcmd:open
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb">open
/Users/claralee/Desktop/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
format pdb</a></div></div><table border=1 cellpadding=4 cellspacing=0>\n
<thead>\n <tr>\n <th colspan="2">Chain information for
output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1</th>\n
</tr>\n <tr>\n <th>Chain</th>\n <th>Description</th>\n\n </tr>\n </thead>\n
<tbody>\n <tr>\n <td style="text-align:center"><a title="Select chain"
href="cxcmd:select /B:1-1362">B</a></td>\n <td><a title="Show sequence"
href="cxcmd:sequence chain #1/B">No description available</a></td>\n\n </tr>\n
<tr>\n <td style="text-align:center"><a title="Select chain"
href="cxcmd:select /C:1-443">C</a></td>\n <td><a title="Show sequence"
href="cxcmd:sequence chain #1/C">No description available</a></td>\n\n </tr>\n
</tbody>\n</table><br/><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/sequence.html#chain">sequence chain</a>
#1/B</div><div class="cxcmd_as_cmd"><a href="cxcmd:sequence chain
#1/B">sequence chain #1/B</a></div></div>Alignment identifier is 1/B<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-45</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-45">select
/B:1-45</a></div></div>318 atoms, 322 bonds, 45 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-889</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-889">select
/B:1-889</a></div></div>6934 atoms, 7146 bonds, 889 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-2</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-2">select
/B:1-2</a></div></div>14 atoms, 13 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1-697</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1-697">select
/B:1-697</a></div></div>5473 atoms, 5613 bonds, 697 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:1320-1362</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:1320-1362">select
/B:1320-1362</a></div></div>368 atoms, 370 bonds, 43 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B">select /B</a></div></div>10708
atoms, 11041 bonds, 1362 residues, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel medium blue</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel medium blue">color sel medium
blue</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:285</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:285">select
/B:285</a></div></div>9 atoms, 8 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /B:285-290</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /B:285-290">select
/B:285-290</a></div></div>49 atoms, 48 bonds, 6 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-443">select
/C:1-443</a></div></div>3134 atoms, 3218 bonds, 443 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-443">select
/C:1-443</a></div></div>3134 atoms, 3218 bonds, 443 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Show
Sequence Viewer&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool
show &quot;Show Sequence Viewer&quot;">ui tool show &quot;Show Sequence
Viewer&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/sequence.html#chain">sequence chain</a> /C</div><div
class="cxcmd_as_cmd"><a href="cxcmd:sequence chain /C">sequence chain
/C</a></div></div>Alignment identifier is 1/C<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-2</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-2">select
/C:1-2</a></div></div>20 atoms, 20 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C">select /C</a></div></div>3134
atoms, 3218 bonds, 443 residues, 1 model selected<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/color.html">color</a> sel
red</div><div class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:157-158</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:157-158">select
/C:157-158</a></div></div>18 atoms, 18 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:157-161</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:157-161">select
/C:157-161</a></div></div>37 atoms, 38 bonds, 5 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1">select /C:1</a></div></div>8
atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-114</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-114">select
/C:1-114</a></div></div>745 atoms, 771 bonds, 114 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:125</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:125">select
/C:125</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:125-126</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:125-126">select
/C:125-126</a></div></div>10 atoms, 9 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:73-75</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:73-75">select
/C:73-75</a></div></div>14 atoms, 13 bonds, 3 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-75</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-75">select
/C:1-75</a></div></div>480 atoms, 494 bonds, 75 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel orange red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel orange red">color sel orange
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text TAD1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text TAD1">label sel text
TAD1</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76">select
/C:76</a></div></div>6 atoms, 5 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76">select
/C:76</a></div></div>6 atoms, 5 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:131">select
/C:131</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:76-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:76-131">select
/C:76-131</a></div></div>363 atoms, 374 bonds, 56 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel purple</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel purple">color sel
purple</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132">select
/C:132</a></div></div>12 atoms, 12 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132-183</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132-183">select
/C:132-183</a></div></div>343 atoms, 353 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179">select
/C:179</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:132-179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:132-179">select
/C:132-179</a></div></div>321 atoms, 330 bonds, 48 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel cyan</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel cyan">color sel
cyan</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text TAD2</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text TAD2">label sel text
TAD2</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-180</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-180">select
/C:179-180</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-230</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-230">select
/C:179-230</a></div></div>391 atoms, 403 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179">select
/C:179</a></div></div>5 atoms, 4 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-230</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-230">select
/C:179-230</a></div></div>391 atoms, 403 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:216</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:216">select
/C:216</a></div></div>11 atoms, 10 bonds, 1 residue, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:179-216</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:179-216">select
/C:179-216</a></div></div>285 atoms, 294 bonds, 38 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel light sea green</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel light sea green">color sel light
sea green</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217">select
/C:217</a></div></div>9 atoms, 8 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217-268</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217-268">select
/C:217-268</a></div></div>409 atoms, 417 bonds, 52 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:241-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:241-242">select
/C:241-242</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:217-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:217-242">select
/C:217-242</a></div></div>195 atoms, 199 bonds, 26 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel lime</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel lime">color sel
lime</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/label.html">label</a> sel text Zn1</div><div
class="cxcmd_as_cmd"><a href="cxcmd:label sel text Zn1">label sel text
Zn1</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:241-242</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:241-242">select
/C:241-242</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:242-279</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:242-279">select
/C:242-279</a></div></div>293 atoms, 296 bonds, 38 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:271-272</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:271-272">select
/C:271-272</a></div></div>12 atoms, 11 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:240-271</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:240-271">select
/C:240-271</a></div></div>251 atoms, 254 bonds, 32 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel yellow</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel yellow">color sel
yellow</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:272-273</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:272-273">select
/C:272-273</a></div></div>11 atoms, 10 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:272-443</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:272-443">select
/C:272-443</a></div></div>1263 atoms, 1291 bonds, 172 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:107-108</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:107-108">select
/C:107-108</a></div></div>22 atoms, 22 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:107-109</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:107-109">select
/C:107-109</a></div></div>28 atoms, 28 bonds, 3 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Color
Key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool show
&quot;Color Key&quot;">ui tool show &quot;Color Key&quot;</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right &quot;color
key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
&quot;color key&quot;">ui mousemode right &quot;color
key&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right
translate</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
translate">ui mousemode right translate</a></div></div><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/undo.html">undo</a></div><div
class="cxcmd_as_cmd"><a href="cxcmd:undo">undo</a></div></div>[Repeated 1
time(s)]<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#tool-show">ui tool show</a> &quot;Color
Key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui tool show
&quot;Color Key&quot;">ui tool show &quot;Color Key&quot;</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right &quot;color
key&quot;</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
&quot;color key&quot;">ui mousemode right &quot;color
key&quot;</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/key.html#delete">key delete</a></div><div
class="cxcmd_as_cmd"><a href="cxcmd:key delete">key delete</a></div></div><div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/ui.html#mousemode">ui mousemode</a> right
translate</div><div class="cxcmd_as_cmd"><a href="cxcmd:ui mousemode right
translate">ui mousemode right translate</a></div></div><div class="cxcmd"><div
class="cxcmd_as_doc"><a href="help:user/commands/select.html">select</a>
/C:1-2</div><div class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-2">select
/C:1-2</a></div></div>20 atoms, 20 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-60</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-60">select
/C:1-60</a></div></div>406 atoms, 420 bonds, 60 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:130-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:130-131">select
/C:130-131</a></div></div>10 atoms, 9 bonds, 2 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:1-131</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:1-131">select
/C:1-131</a></div></div>843 atoms, 869 bonds, 131 residues, 1 model
selected<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/color.html">color</a> sel red</div><div
class="cxcmd_as_cmd"><a href="cxcmd:color sel red">color sel
red</a></div></div><div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:308</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:308">select
/C:308</a></div></div>7 atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/select.html">select</a> /C:308</div><div
class="cxcmd_as_cmd"><a href="cxcmd:select /C:308">select
/C:308</a></div></div>7 atoms, 7 bonds, 1 residue, 1 model selected<br>\n<div
class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/save.html">save</a> /Users/claralee/bg.cxs</div><div
class="cxcmd_as_cmd"><a href="cxcmd:save /Users/claralee/bg.cxs">save
/Users/claralee/bg.cxs</a></div></div><p>&mdash;&mdash;&mdash; End of log from
Mon May 22 20:19:41 2023 &mdash;&mdash;&mdash;</p></details>opened ChimeraX
session<br>\n<div class="cxcmd"><div class="cxcmd_as_doc"><a
href="help:user/commands/save.html">save</a>
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;</div><div
class="cxcmd_as_cmd"><a href="cxcmd:save
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;">save
&quot;/Users/claralee/Desktop/Brd4-Gata4 ChimeraX.cxs&quot;</a></div></div>'}}  

restore_snapshot for "Log" returned None  

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open
> /Users/claralee/Downloads/output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb
> format pdb

Chain information for
output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb #1  
---  
Chain | Description  
B | No description available  
C | No description available  
  

> close

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  

> open /Users/claralee/bg.cxs format session

can't find bundle info {'name':
'output_dir%2Finput%2Funrelaxed_model_1_multimer_v2_pred_0.pdb (#1) Chain C
[ID: 1/C]', 'version': 2, 'shown': True}  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 757, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/seq_view/tool.py", line 840, in restore_snapshot  
inst._finalize_init(data['alignment'])  
^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute '_finalize_init'  
  
opened ChimeraX session  




OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M2
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: Mac14,2
      Model Number: Z15S001ECLL/A
      Chip: Apple M2
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 8419.80.7
      OS Loader Version: 8419.80.7

Software:

    System Software Overview:

      System Version: macOS 13.2.1 (22D68)
      Kernel Version: Darwin 22.3.0
      Time since boot: 13 days, 1 hour, 43 minutes

Graphics/Displays:

    Apple M2:

      Chipset Model: Apple M2
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina Display
          Resolution: 2560 x 1664 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U2718Q:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.13
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.2
    ChimeraX-AtomicLibrary: 14.1.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9.dev202406210539
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-DeepMutationalScan: 1.0
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.4
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.1.5
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.12.1
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.6
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.2
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.0
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.1
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt_toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject_hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.32.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    Sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia_utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing_extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.2
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11

Change History (2)

comment:1 by pett, 16 months ago

Cc: chimera-programmers added
Component: Unassigned → Sessions
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Cannot restore session in daily build

comment:2 by pett, 16 months ago

Resolution: → duplicate
Status: assigned → closed

Duplicate of #15472; adding reporter to recipient list for that ticket

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