![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 17 months ago
Closed 17 months ago
#15418 closed defect (duplicate)
Crash changing Mac display configuration
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.5.2-x86_64-i386-64bit
ChimeraX Version: 1.8.dev202403210048 (2024-03-21 00:48:29 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff8463f7700 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 280 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 62)
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{
"uptime" : 940000,
"procRole" : "Background",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,3",
"coalitionID" : 322943,
"osVersion" : {
"train" : "macOS 13.5.2",
"build" : "22G91",
"releaseType" : "User"
},
"captureTime" : "2024-06-12 14:42:37.2079 +0200",
"incident" : "C80FCE79-92DE-4D60-9588-212EBD1B2C7C",
"pid" : 56150,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-06-12 10:22:33.3031 +0200",
"procStartAbsTime" : 927170476926830,
"procExitAbsTime" : 942381380185908,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"B89C41F9-A637-5923-BC00-F5C166B5AE7A","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F6513F81-6AE5-B890-4910-BF921FC280F8",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 3106,
"bridgeVersion" : {"build":"20P6072","train":"7.6"},
"sleepWakeUUID" : "5AFF6ACE-BF80-4498-B440-A0C79D10F3E5",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4344795136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 102f85000-102f89000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":56150},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4344795136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 102f85000-102f89000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
> format session
opened ChimeraX session
> hide #!5 models
> hide #!7 models
Already setting window visible!
> show #!7 models
> hide #!7 models
> show #!6 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #!4 models
> select #4.1/R:85@CD2
1 atom, 1 residue, 1 model selected
> hide sel surfaces
> select add #4
46090 atoms, 47318 bonds, 5 pseudobonds, 5875 residues, 13 models selected
> hide sel & #!4.1 surfaces
> select clear
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie8.mp4
Movie saved to /Users/Cesar/Desktop/movie8.mp4
> show #!4.1 surfaces
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie9.mp4
Movie saved to /Users/Cesar/Desktop/movie9.mp4
> save
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
> open /Users/Cesar/Downloads/AF-Q9BY15-F1-model_v4.pdb format pdb
AF-Q9BY15-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for adhesion G protein-coupled receptor E3
(Q9BY15) [more info...]
Chain information for AF-Q9BY15-F1-model_v4.pdb #8
---
Chain | Description | UniProt
A | adhesion G protein-coupled receptor E3 | AGRE3_HUMAN 1-652
> open
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
> format session
opened ChimeraX session
> open 8urn fromDatabase pdbe_bio format mmcif
No biogical assemblies available for 8urn
> open 8u4n fromDatabase pdbe_bio format mmcif
No biogical assemblies available for 8u4n
> open /Users/Cesar/Downloads/8u4n(2).pdb
8u4n(2).pdb title:
Structure of apo CXCR4/gi complex [more info...]
Chain information for 8u4n(2).pdb #8
---
Chain | Description | UniProt
A | adenylate cyclase-inhibiting G α protein | GNAI1_HUMAN 2-354
B | transducin β chain 1 | GBB1_HUMAN 2-340
C | G γ-I | GBG2_HUMAN 1-71
R | C-X-C chemokine receptor type 4 | CXCR4_HUMAN 2-352
Non-standard residues in 8u4n(2).pdb #8
---
CLR — cholesterol
> hide #!4.1 models
> show #!4.1 models
> hide #!4 models
> show #!4 models
> mmaker #8 to #4.1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7mta_RhodopsinGRK1.pdb, chain R (#4.1) with 8u4n(2).pdb, chain R
(#8), sequence alignment score = 404.7
RMSD between 125 pruned atom pairs is 1.208 angstroms; (across all 273 pairs:
4.409)
> hide #!4 models
> select #8/R:50
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
223 atoms, 227 bonds, 29 residues, 1 model selected
> select up
2283 atoms, 2348 bonds, 283 residues, 1 model selected
> hide sel cartoons
> select up
2311 atoms, 2379 bonds, 284 residues, 1 model selected
> hide sel atoms
> select up
6963 atoms, 7114 bonds, 890 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> select down
2311 atoms, 2379 bonds, 284 residues, 5 models selected
> show sel cartoons
> select clear
> select #8/A:248
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
120 atoms, 121 bonds, 15 residues, 2 models selected
> select up
1416 atoms, 1447 bonds, 173 residues, 2 models selected
> select #8/R:54
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
223 atoms, 227 bonds, 29 residues, 2 models selected
> select up
2283 atoms, 2348 bonds, 283 residues, 2 models selected
> hide sel cartoons
> select #8/A:349
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
198 atoms, 199 bonds, 25 residues, 2 models selected
> select up
1416 atoms, 1447 bonds, 173 residues, 2 models selected
> select up
1424 atoms, 1454 bonds, 174 residues, 2 models selected
> select up
1779 atoms, 1809 bonds, 221 residues, 2 models selected
> color (#!8 & sel) orange
> select #8/B:9
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
135 atoms, 134 bonds, 20 residues, 2 models selected
> select up
2528 atoms, 2575 bonds, 335 residues, 2 models selected
> select #8/C:15
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
67 atoms, 66 bonds, 12 residues, 2 models selected
> select up
345 atoms, 351 bonds, 50 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light salmon
> select clear
> select #8/A:10
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
211 atoms, 210 bonds, 27 residues, 2 models selected
> select up
363 atoms, 362 bonds, 48 residues, 2 models selected
> select up
382 atoms, 380 bonds, 51 residues, 2 models selected
> select up
1779 atoms, 1809 bonds, 221 residues, 2 models selected
> select up
6963 atoms, 7114 bonds, 890 residues, 2 models selected
> show sel cartoons
> select subtract #8/R:186
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select down
6957 atoms, 7106 bonds, 889 residues, 5 models selected
> select subtract #8.5
4680 atoms, 4766 bonds, 607 residues, 5 models selected
> select subtract #8.4
4335 atoms, 4415 bonds, 557 residues, 4 models selected
> select subtract #8.3
1807 atoms, 1840 bonds, 222 residues, 3 models selected
> select subtract #8.2
28 atoms, 31 bonds, 1 residue, 2 models selected
> select add #8.5
2311 atoms, 31 bonds, 284 residues, 1 model selected
> hide sel cartoons
> select subtract #8.5
28 atoms, 31 bonds, 1 residue, 2 models selected
> select add #8.4
373 atoms, 31 bonds, 51 residues, 1 model selected
> select add #8.3
2901 atoms, 31 bonds, 386 residues, 2 models selected
> select add #8.2
4680 atoms, 31 bonds, 607 residues, 3 models selected
> show sel surfaces
> transparency (#!8 & sel) 50
> show #!4 models
> select clear
> save
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie10.mp4
Movie saved to /Users/Cesar/Desktop/movie10.mp4
> hide #!8#!4.1 surfaces
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie11.mp4
Movie saved to /Users/Cesar/Desktop/movie11.mp4
> open 8u4o fromDatabase pdbe_bio format mmcif
No biogical assemblies available for 8u4o
> open 8u40 fromDatabase pdbe_bio format mmcif
No biogical assemblies available for 8u40
> open 8u40 fromDatabase pdbe_bio format mmcif
No biogical assemblies available for 8u40
> open /Users/Cesar/Downloads/pdb8u4o.ent
pdb8u4o.ent title:
Structure of CXCL12-bound CXCR4/gi complex [more info...]
Chain information for pdb8u4o.ent #9
---
Chain | Description | UniProt
A | adenylate cyclase-inhibiting G α protein | GNAI1_HUMAN 2-354
B | transducin β chain 1 | GBB1_HUMAN 2-340
C | G γ-I | GBG2_HUMAN 1-71
J | stromal cell-derived factor 1 | SDF1_HUMAN 1-68
R | C-X-C chemokine receptor type 4 | CXCR4_HUMAN 2-352
Non-standard residues in pdb8u4o.ent #9
---
CLR — cholesterol
> mmaker #9 to #4.1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7mta_RhodopsinGRK1.pdb, chain R (#4.1) with pdb8u4o.ent, chain R
(#9), sequence alignment score = 406.8
RMSD between 119 pruned atom pairs is 1.157 angstroms; (across all 279 pairs:
5.473)
> hide #!8 models
> hide #!9#!4.1 atoms
> show #!9#!4.1 cartoons
> hide #!4 models
> select #9/R:47
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
284 atoms, 289 bonds, 36 residues, 1 model selected
> select up
2372 atoms, 2440 bonds, 295 residues, 1 model selected
> hide sel cartoons
> show #!5 models
> hide #!5 models
> show #!4 models
> hide #!9 models
> show #!8 models
> hide #!8 models
> show #!9 models
> hide #!4 models
> show sel cartoons
> select clear
> select add #9
7401 atoms, 7559 bonds, 1 pseudobond, 967 residues, 2 models selected
> show sel surfaces
> transparency (#!9 & sel) 50
> select clear
> save
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie12.mp4
Movie saved to /Users/Cesar/Desktop/movie12.mp4
> select add #9
7401 atoms, 7559 bonds, 1 pseudobond, 967 residues, 2 models selected
> hide sel surfaces
> select clear
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie13.mp4
Movie saved to /Users/Cesar/Desktop/movie13.mp4
> hide #9.1 models
> show #9.1 models
> hide #9.1 models
> hide #9.2 models
> show #9.2 models
> select add #9.2
1777 atoms, 221 residues, 1 model selected
> select add #9.3
4293 atoms, 556 residues, 2 models selected
> select add #9.4
4638 atoms, 606 residues, 3 models selected
> hide #9.4 models
> hide #9.3 models
> hide #9.2 models
> show #9.2 models
> show #9.3 models
> show #9.4 models
> hide #9.4 models
> hide #9.3 models
> hide #9.2 models
> hide sel cartoons
> select add #9.5
5001 atoms, 671 residues, 4 models selected
> hide #9.5 models
> show #9.5 models
> hide sel cartoons
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie14.mp4
Movie saved to /Users/Cesar/Desktop/movie14.mp4
> select subtract #9.4
4656 atoms, 621 residues, 5 models selected
> select subtract #9.3
2140 atoms, 286 residues, 4 models selected
> select subtract #9.2
363 atoms, 65 residues, 3 models selected
> show sel cartoons
> select clear
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie15.mp4
Movie saved to /Users/Cesar/Desktop/movie15.mp4
> select add #9.4
345 atoms, 50 residues, 1 model selected
> select add #9.3
2861 atoms, 385 residues, 2 models selected
> select add #9.2
4638 atoms, 606 residues, 3 models selected
> show #9.2 models
> show #9.3 models
> show #9.4 models
> hide sel cartoons
> show sel cartoons
> select clear
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/Cesar/Desktop/movie16.mp4
Movie saved to /Users/Cesar/Desktop/movie16.mp4
> save
> /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.14.1
OpenGL renderer: AMD Radeon Pro Vega 16 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,3
Processor Name: 6-Core Intel Core i9
Processor Speed: 2,9 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 12 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
System Firmware Version: 1968.140.7.0.0 (iBridge: 20.16.6072.0.0,0)
OS Loader Version: 577.140.2~15
Software:
System Software Overview:
System Version: macOS 13.5.2 (22G91)
Kernel Version: Darwin 22.6.0
Time since boot: 35 days, 8 hours, 27 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Radeon Pro Vega 16:
Chipset Model: Radeon Pro Vega 16
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x69af
Revision ID: 0x00c7
ROM Revision: 113-D2060I-087
VBIOS Version: 113-D20601MA0L-016
Option ROM Version: 113-D20601MA0L-016
EFI Driver Version: 01.01.087
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2418HT:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 32MPJ975608L
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.14.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.1.1
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.16
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.5
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.56
ChimeraX-AtomicLibrary: 14.0.2
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8.dev202403210048
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.3
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.37.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.9
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.1
fonttools: 4.50.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.10.0
html2text: 2024.2.26
idna: 3.6
ihm: 0.43
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.1.0
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.3
matplotlib-inline: 0.1.6
msgpack: 1.0.8
ndindex: 1.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.2.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.9.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.3
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.2.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.0
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.3.0
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3302
pyparsing: 3.1.2
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.2
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.2
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 25.1.2
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.12.0
setuptools: 69.2.0
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.0
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.1
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
traitlets: 5.14.1
typing-extensions: 4.10.0
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
Change History (2)
comment:1 by , 17 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash changing Mac display configuration |
comment:2 by , 17 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Duplicate of #15277. Fixed.