Opened 17 months ago
#15292 assigned enhancement
Add a Show Contacts button to the AlphaFold PAE error plot
| Reported by: | Tom Goddard | Owned by: | Tom Goddard |
|---|---|---|---|
| Priority: | moderate | Milestone: | |
| Component: | Structure Prediction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
It would be nice to have a "Show Contacts" button on the AlphaFold PAE error plot panel that runs the command "alphafold contacts #<model_id>" which will show pseudobonds for all close pairs of residue colored by PAE. Probably the button should change to "Hide Contacts" after they are shown.
This is a pretty useful way to visualize PAE directly on the structure to see if interfaces between molecules are confidently predicted.
It might be nice to issue the command with the "distance 3 radius 0.5" options so the user can see how to change those parameters by looking at the log.
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