Opened 17 months ago

#15292 assigned enhancement

Add a Show Contacts button to the AlphaFold PAE error plot

Reported by: Tom Goddard Owned by: Tom Goddard
Priority: moderate Milestone:
Component: Structure Prediction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

It would be nice to have a "Show Contacts" button on the AlphaFold PAE error plot panel that runs the command "alphafold contacts #<model_id>" which will show pseudobonds for all close pairs of residue colored by PAE. Probably the button should change to "Hide Contacts" after they are shown.

This is a pretty useful way to visualize PAE directly on the structure to see if interfaces between molecules are confidently predicted.

It might be nice to issue the command with the "distance 3 radius 0.5" options so the user can see how to change those parameters by looking at the log.

Change History (0)

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