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Opened 18 months ago
#15289 assigned enhancement
Show pLLDT coloring when AlphaFold model is opened
| Reported by: | Tom Goddard | Owned by: | Tom Goddard |
|---|---|---|---|
| Priority: | moderate | Milestone: | |
| Component: | Structure Prediction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
Might be nice to color by pLDDT when an AlphaFold model is open, and to show ribbons with ligands, ions, glycans and modified residues. While this coloring might be best when first opening an AlphaFold model I am not sure it will be what the user wants when opening it every time.
AlphaFold 3 mmCIF files identify the model as coming from AlphaFold have in the mmCIF software table.
ChimeraX ColabFold produces PDB files with no remarks. They could be identified by seeing alphafold2_multimer_v3 in the file name. The multimer part is present even when monomer predictions are run. The file names will likely be different if AlphaFold 2 is run in other ways. Maybe mmCIF AlphaFold 2 output identifies the model as coming from alphafold.
