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Opened 18 months ago
Closed 18 months ago
#15269 closed defect (fixed)
Write mmCIF: 'Residue' object has no attribute 'ribbon_displayed'
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Eric Pettersen, Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.6.7-x86_64-i386-64bit
ChimeraX Version: 1.8.dev202403210048 (2024-03-21 00:48:29 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/mauriciocomas/Desktop/chik 3 hexamers.cxs"
Log from Tue May 21 15:43:36 2024UCSF ChimeraX version: 1.8.dev202403210048
(2024-03-21)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/mauriciocomas/Library/CloudStorage/OneDrive-
> UniversidadAutonomadeSanLuisPotosi-UASLP/Lab Comas Garcia/Lab
> Virologia/CHIKV Assembly/Chimera X sessions/CHIKV 3 fold hexamers
> surface.cxs"
Log from Fri Nov 3 13:20:21 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/mauriciocomas/Library/CloudStorage/OneDrive-
> UniversidadAutonomadeSanLuisPotosi-UASLP/Lab Comas Garcia/Lab
> Virologia/CHIKV Assembly/Chimera X sessions/CHIKV 3 fold axis between
> hexamers.cxs"
Log from Thu Mar 9 17:10:26 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIKV 3
> fold axis between hexamers.cxs"
Log from Tue Feb 28 17:25:17 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIV
> structure.cxs" format session
Log from Wed Feb 22 17:41:22 2023UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/6nk5.pdb1
6nk5.pdb1 title:
Electron cryo-microscopy of chikungunya VLP [more info...]
Chain information for 6nk5.pdb1
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A 1.21/A 1.22/A 1.23/A 1.24/A 1.25/A 1.26/A 1.27/A 1.28/A 1.29/A 1.30/A 1.31/A 1.32/A 1.33/A 1.34/A 1.35/A 1.36/A 1.37/A 1.38/A 1.39/A 1.40/A 1.41/A 1.42/A 1.43/A 1.44/A 1.45/A 1.46/A 1.47/A 1.48/A 1.49/A 1.50/A 1.51/A 1.52/A 1.53/A 1.54/A 1.55/A 1.56/A 1.57/A 1.58/A 1.59/A 1.60/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B 1.21/B 1.22/B 1.23/B 1.24/B 1.25/B 1.26/B 1.27/B 1.28/B 1.29/B 1.30/B 1.31/B 1.32/B 1.33/B 1.34/B 1.35/B 1.36/B 1.37/B 1.38/B 1.39/B 1.40/B 1.41/B 1.42/B 1.43/B 1.44/B 1.45/B 1.46/B 1.47/B 1.48/B 1.49/B 1.50/B 1.51/B 1.52/B 1.53/B 1.54/B 1.55/B 1.56/B 1.57/B 1.58/B 1.59/B 1.60/B 1.1/C 1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.12/C 1.13/C 1.14/C 1.15/C 1.16/C 1.17/C 1.18/C 1.19/C 1.20/C 1.21/C 1.22/C 1.23/C 1.24/C 1.25/C 1.26/C 1.27/C 1.28/C 1.29/C 1.30/C 1.31/C 1.32/C 1.33/C 1.34/C 1.35/C 1.36/C 1.37/C 1.38/C 1.39/C 1.40/C 1.41/C 1.42/C 1.43/C 1.44/C 1.45/C 1.46/C 1.47/C 1.48/C 1.49/C 1.50/C 1.51/C 1.52/C 1.53/C 1.54/C 1.55/C 1.56/C 1.57/C 1.58/C 1.59/C 1.60/C 1.1/D 1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.12/D 1.13/D 1.14/D 1.15/D 1.16/D 1.17/D 1.18/D 1.19/D 1.20/D 1.21/D 1.22/D 1.23/D 1.24/D 1.25/D 1.26/D 1.27/D 1.28/D 1.29/D 1.30/D 1.31/D 1.32/D 1.33/D 1.34/D 1.35/D 1.36/D 1.37/D 1.38/D 1.39/D 1.40/D 1.41/D 1.42/D 1.43/D 1.44/D 1.45/D 1.46/D 1.47/D 1.48/D 1.49/D 1.50/D 1.51/D 1.52/D 1.53/D 1.54/D 1.55/D 1.56/D 1.57/D 1.58/D 1.59/D 1.60/D | No description available
1.1/E 1.2/E 1.3/E 1.4/E 1.5/E 1.6/E 1.7/E 1.8/E 1.9/E 1.10/E 1.11/E 1.12/E 1.13/E 1.14/E 1.15/E 1.16/E 1.17/E 1.18/E 1.19/E 1.20/E 1.21/E 1.22/E 1.23/E 1.24/E 1.25/E 1.26/E 1.27/E 1.28/E 1.29/E 1.30/E 1.31/E 1.32/E 1.33/E 1.34/E 1.35/E 1.36/E 1.37/E 1.38/E 1.39/E 1.40/E 1.41/E 1.42/E 1.43/E 1.44/E 1.45/E 1.46/E 1.47/E 1.48/E 1.49/E 1.50/E 1.51/E 1.52/E 1.53/E 1.54/E 1.55/E 1.56/E 1.57/E 1.58/E 1.59/E 1.60/E 1.1/F 1.2/F 1.3/F 1.4/F 1.5/F 1.6/F 1.7/F 1.8/F 1.9/F 1.10/F 1.11/F 1.12/F 1.13/F 1.14/F 1.15/F 1.16/F 1.17/F 1.18/F 1.19/F 1.20/F 1.21/F 1.22/F 1.23/F 1.24/F 1.25/F 1.26/F 1.27/F 1.28/F 1.29/F 1.30/F 1.31/F 1.32/F 1.33/F 1.34/F 1.35/F 1.36/F 1.37/F 1.38/F 1.39/F 1.40/F 1.41/F 1.42/F 1.43/F 1.44/F 1.45/F 1.46/F 1.47/F 1.48/F 1.49/F 1.50/F 1.51/F 1.52/F 1.53/F 1.54/F 1.55/F 1.56/F 1.57/F 1.58/F 1.59/F 1.60/F 1.1/G 1.2/G 1.3/G 1.4/G 1.5/G 1.6/G 1.7/G 1.8/G 1.9/G 1.10/G 1.11/G 1.12/G 1.13/G 1.14/G 1.15/G 1.16/G 1.17/G 1.18/G 1.19/G 1.20/G 1.21/G 1.22/G 1.23/G 1.24/G 1.25/G 1.26/G 1.27/G 1.28/G 1.29/G 1.30/G 1.31/G 1.32/G 1.33/G 1.34/G 1.35/G 1.36/G 1.37/G 1.38/G 1.39/G 1.40/G 1.41/G 1.42/G 1.43/G 1.44/G 1.45/G 1.46/G 1.47/G 1.48/G 1.49/G 1.50/G 1.51/G 1.52/G 1.53/G 1.54/G 1.55/G 1.56/G 1.57/G 1.58/G 1.59/G 1.60/G 1.1/H 1.2/H 1.3/H 1.4/H 1.5/H 1.6/H 1.7/H 1.8/H 1.9/H 1.10/H 1.11/H 1.12/H 1.13/H 1.14/H 1.15/H 1.16/H 1.17/H 1.18/H 1.19/H 1.20/H 1.21/H 1.22/H 1.23/H 1.24/H 1.25/H 1.26/H 1.27/H 1.28/H 1.29/H 1.30/H 1.31/H 1.32/H 1.33/H 1.34/H 1.35/H 1.36/H 1.37/H 1.38/H 1.39/H 1.40/H 1.41/H 1.42/H 1.43/H 1.44/H 1.45/H 1.46/H 1.47/H 1.48/H 1.49/H 1.50/H 1.51/H 1.52/H 1.53/H 1.54/H 1.55/H 1.56/H 1.57/H 1.58/H 1.59/H 1.60/H | No description available
1.1/I 1.2/I 1.3/I 1.4/I 1.5/I 1.6/I 1.7/I 1.8/I 1.9/I 1.10/I 1.11/I 1.12/I 1.13/I 1.14/I 1.15/I 1.16/I 1.17/I 1.18/I 1.19/I 1.20/I 1.21/I 1.22/I 1.23/I 1.24/I 1.25/I 1.26/I 1.27/I 1.28/I 1.29/I 1.30/I 1.31/I 1.32/I 1.33/I 1.34/I 1.35/I 1.36/I 1.37/I 1.38/I 1.39/I 1.40/I 1.41/I 1.42/I 1.43/I 1.44/I 1.45/I 1.46/I 1.47/I 1.48/I 1.49/I 1.50/I 1.51/I 1.52/I 1.53/I 1.54/I 1.55/I 1.56/I 1.57/I 1.58/I 1.59/I 1.60/I 1.1/J 1.2/J 1.3/J 1.4/J 1.5/J 1.6/J 1.7/J 1.8/J 1.9/J 1.10/J 1.11/J 1.12/J 1.13/J 1.14/J 1.15/J 1.16/J 1.17/J 1.18/J 1.19/J 1.20/J 1.21/J 1.22/J 1.23/J 1.24/J 1.25/J 1.26/J 1.27/J 1.28/J 1.29/J 1.30/J 1.31/J 1.32/J 1.33/J 1.34/J 1.35/J 1.36/J 1.37/J 1.38/J 1.39/J 1.40/J 1.41/J 1.42/J 1.43/J 1.44/J 1.45/J 1.46/J 1.47/J 1.48/J 1.49/J 1.50/J 1.51/J 1.52/J 1.53/J 1.54/J 1.55/J 1.56/J 1.57/J 1.58/J 1.59/J 1.60/J 1.1/K 1.2/K 1.3/K 1.4/K 1.5/K 1.6/K 1.7/K 1.8/K 1.9/K 1.10/K 1.11/K 1.12/K 1.13/K 1.14/K 1.15/K 1.16/K 1.17/K 1.18/K 1.19/K 1.20/K 1.21/K 1.22/K 1.23/K 1.24/K 1.25/K 1.26/K 1.27/K 1.28/K 1.29/K 1.30/K 1.31/K 1.32/K 1.33/K 1.34/K 1.35/K 1.36/K 1.37/K 1.38/K 1.39/K 1.40/K 1.41/K 1.42/K 1.43/K 1.44/K 1.45/K 1.46/K 1.47/K 1.48/K 1.49/K 1.50/K 1.51/K 1.52/K 1.53/K 1.54/K 1.55/K 1.56/K 1.57/K 1.58/K 1.59/K 1.60/K 1.1/L 1.2/L 1.3/L 1.4/L 1.5/L 1.6/L 1.7/L 1.8/L 1.9/L 1.10/L 1.11/L 1.12/L 1.13/L 1.14/L 1.15/L 1.16/L 1.17/L 1.18/L 1.19/L 1.20/L 1.21/L 1.22/L 1.23/L 1.24/L 1.25/L 1.26/L 1.27/L 1.28/L 1.29/L 1.30/L 1.31/L 1.32/L 1.33/L 1.34/L 1.35/L 1.36/L 1.37/L 1.38/L 1.39/L 1.40/L 1.41/L 1.42/L 1.43/L 1.44/L 1.45/L 1.46/L 1.47/L 1.48/L 1.49/L 1.50/L 1.51/L 1.52/L 1.53/L 1.54/L 1.55/L 1.56/L 1.57/L 1.58/L 1.59/L 1.60/L | No description available
> select
> #1.1/A#1.2/A#1.3/A#1.4/A#1.5/A#1.6/A#1.7/A#1.8/A#1.9/A#1.10/A#1.11/A#1.12/A#1.13/A#1.14/A#1.15/A#1.16/A#1.17/A#1.18/A#1.19/A#1.20/A#1.21/A#1.22/A#1.23/A#1.24/A#1.25/A#1.26/A#1.27/A#1.28/A#1.29/A#1.30/A#1.31/A#1.32/A#1.33/A#1.34/A#1.35/A#1.36/A#1.37/A#1.38/A#1.39/A#1.40/A#1.41/A#1.42/A#1.43/A#1.44/A#1.45/A#1.46/A#1.47/A#1.48/A#1.49/A#1.50/A#1.51/A#1.52/A#1.53/A#1.54/A#1.55/A#1.56/A#1.57/A#1.58/A#1.59/A#1.60/A
199920 atoms, 204848 bonds, 26400 residues, 60 models selected
> hide sel atoms
> select
> #1.1/B#1.2/B#1.3/B#1.4/B#1.5/B#1.6/B#1.7/B#1.8/B#1.9/B#1.10/B#1.11/B#1.12/B#1.13/B#1.14/B#1.15/B#1.16/B#1.17/B#1.18/B#1.19/B#1.20/B#1.21/B#1.22/B#1.23/B#1.24/B#1.25/B#1.26/B#1.27/B#1.28/B#1.29/B#1.30/B#1.31/B#1.32/B#1.33/B#1.34/B#1.35/B#1.36/B#1.37/B#1.38/B#1.39/B#1.40/B#1.41/B#1.42/B#1.43/B#1.44/B#1.45/B#1.46/B#1.47/B#1.48/B#1.49/B#1.50/B#1.51/B#1.52/B#1.53/B#1.54/B#1.55/B#1.56/B#1.57/B#1.58/B#1.59/B#1.60/B
199920 atoms, 204848 bonds, 26400 residues, 60 models selected
> hide sel atoms
> select
> #1.1/C#1.2/C#1.3/C#1.4/C#1.5/C#1.6/C#1.7/C#1.8/C#1.9/C#1.10/C#1.11/C#1.12/C#1.13/C#1.14/C#1.15/C#1.16/C#1.17/C#1.18/C#1.19/C#1.20/C#1.21/C#1.22/C#1.23/C#1.24/C#1.25/C#1.26/C#1.27/C#1.28/C#1.29/C#1.30/C#1.31/C#1.32/C#1.33/C#1.34/C#1.35/C#1.36/C#1.37/C#1.38/C#1.39/C#1.40/C#1.41/C#1.42/C#1.43/C#1.44/C#1.45/C#1.46/C#1.47/C#1.48/C#1.49/C#1.50/C#1.51/C#1.52/C#1.53/C#1.54/C#1.55/C#1.56/C#1.57/C#1.58/C#1.59/C#1.60/C
199920 atoms, 204847 bonds, 26400 residues, 60 models selected
> hide sel atoms
> select
> #1.1/D#1.2/D#1.3/D#1.4/D#1.5/D#1.6/D#1.7/D#1.8/D#1.9/D#1.10/D#1.11/D#1.12/D#1.13/D#1.14/D#1.15/D#1.16/D#1.17/D#1.18/D#1.19/D#1.20/D#1.21/D#1.22/D#1.23/D#1.24/D#1.25/D#1.26/D#1.27/D#1.28/D#1.29/D#1.30/D#1.31/D#1.32/D#1.33/D#1.34/D#1.35/D#1.36/D#1.37/D#1.38/D#1.39/D#1.40/D#1.41/D#1.42/D#1.43/D#1.44/D#1.45/D#1.46/D#1.47/D#1.48/D#1.49/D#1.50/D#1.51/D#1.52/D#1.53/D#1.54/D#1.55/D#1.56/D#1.57/D#1.58/D#1.59/D#1.60/D
199920 atoms, 204848 bonds, 26400 residues, 60 models selected
> hide sel atoms
> select
> #1.1/E#1.2/E#1.3/E#1.4/E#1.5/E#1.6/E#1.7/E#1.8/E#1.9/E#1.10/E#1.11/E#1.12/E#1.13/E#1.14/E#1.15/E#1.16/E#1.17/E#1.18/E#1.19/E#1.20/E#1.21/E#1.22/E#1.23/E#1.24/E#1.25/E#1.26/E#1.27/E#1.28/E#1.29/E#1.30/E#1.31/E#1.32/E#1.33/E#1.34/E#1.35/E#1.36/E#1.37/E#1.38/E#1.39/E#1.40/E#1.41/E#1.42/E#1.43/E#1.44/E#1.45/E#1.46/E#1.47/E#1.48/E#1.49/E#1.50/E#1.51/E#1.52/E#1.53/E#1.54/E#1.55/E#1.56/E#1.57/E#1.58/E#1.59/E#1.60/E
197640 atoms, 202867 bonds, 25200 residues, 60 models selected
> hide sel atoms
> select
> #1.1/F#1.2/F#1.3/F#1.4/F#1.5/F#1.6/F#1.7/F#1.8/F#1.9/F#1.10/F#1.11/F#1.12/F#1.13/F#1.14/F#1.15/F#1.16/F#1.17/F#1.18/F#1.19/F#1.20/F#1.21/F#1.22/F#1.23/F#1.24/F#1.25/F#1.26/F#1.27/F#1.28/F#1.29/F#1.30/F#1.31/F#1.32/F#1.33/F#1.34/F#1.35/F#1.36/F#1.37/F#1.38/F#1.39/F#1.40/F#1.41/F#1.42/F#1.43/F#1.44/F#1.45/F#1.46/F#1.47/F#1.48/F#1.49/F#1.50/F#1.51/F#1.52/F#1.53/F#1.54/F#1.55/F#1.56/F#1.57/F#1.58/F#1.59/F#1.60/F
197640 atoms, 202866 bonds, 25200 residues, 60 models selected
> hide sel atoms
> select
> #1.1/G#1.2/G#1.3/G#1.4/G#1.5/G#1.6/G#1.7/G#1.8/G#1.9/G#1.10/G#1.11/G#1.12/G#1.13/G#1.14/G#1.15/G#1.16/G#1.17/G#1.18/G#1.19/G#1.20/G#1.21/G#1.22/G#1.23/G#1.24/G#1.25/G#1.26/G#1.27/G#1.28/G#1.29/G#1.30/G#1.31/G#1.32/G#1.33/G#1.34/G#1.35/G#1.36/G#1.37/G#1.38/G#1.39/G#1.40/G#1.41/G#1.42/G#1.43/G#1.44/G#1.45/G#1.46/G#1.47/G#1.48/G#1.49/G#1.50/G#1.51/G#1.52/G#1.53/G#1.54/G#1.55/G#1.56/G#1.57/G#1.58/G#1.59/G#1.60/G
197640 atoms, 202865 bonds, 25200 residues, 60 models selected
> hide sel atoms
> select
> #1.1/H#1.2/H#1.3/H#1.4/H#1.5/H#1.6/H#1.7/H#1.8/H#1.9/H#1.10/H#1.11/H#1.12/H#1.13/H#1.14/H#1.15/H#1.16/H#1.17/H#1.18/H#1.19/H#1.20/H#1.21/H#1.22/H#1.23/H#1.24/H#1.25/H#1.26/H#1.27/H#1.28/H#1.29/H#1.30/H#1.31/H#1.32/H#1.33/H#1.34/H#1.35/H#1.36/H#1.37/H#1.38/H#1.39/H#1.40/H#1.41/H#1.42/H#1.43/H#1.44/H#1.45/H#1.46/H#1.47/H#1.48/H#1.49/H#1.50/H#1.51/H#1.52/H#1.53/H#1.54/H#1.55/H#1.56/H#1.57/H#1.58/H#1.59/H#1.60/H
197640 atoms, 202867 bonds, 25200 residues, 60 models selected
> hide sel atoms
> save "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIV
> structure.cxs"
> select
> #1.1/I#1.2/I#1.3/I#1.4/I#1.5/I#1.6/I#1.7/I#1.8/I#1.9/I#1.10/I#1.11/I#1.12/I#1.13/I#1.14/I#1.15/I#1.16/I#1.17/I#1.18/I#1.19/I#1.20/I#1.21/I#1.22/I#1.23/I#1.24/I#1.25/I#1.26/I#1.27/I#1.28/I#1.29/I#1.30/I#1.31/I#1.32/I#1.33/I#1.34/I#1.35/I#1.36/I#1.37/I#1.38/I#1.39/I#1.40/I#1.41/I#1.42/I#1.43/I#1.44/I#1.45/I#1.46/I#1.47/I#1.48/I#1.49/I#1.50/I#1.51/I#1.52/I#1.53/I#1.54/I#1.55/I#1.56/I#1.57/I#1.58/I#1.59/I#1.60/I
69300 atoms, 70860 bonds, 9060 residues, 60 models selected
> show sel cartoons
> hide sel atoms
> select
> #1.1/J#1.2/J#1.3/J#1.4/J#1.5/J#1.6/J#1.7/J#1.8/J#1.9/J#1.10/J#1.11/J#1.12/J#1.13/J#1.14/J#1.15/J#1.16/J#1.17/J#1.18/J#1.19/J#1.20/J#1.21/J#1.22/J#1.23/J#1.24/J#1.25/J#1.26/J#1.27/J#1.28/J#1.29/J#1.30/J#1.31/J#1.32/J#1.33/J#1.34/J#1.35/J#1.36/J#1.37/J#1.38/J#1.39/J#1.40/J#1.41/J#1.42/J#1.43/J#1.44/J#1.45/J#1.46/J#1.47/J#1.48/J#1.49/J#1.50/J#1.51/J#1.52/J#1.53/J#1.54/J#1.55/J#1.56/J#1.57/J#1.58/J#1.59/J#1.60/J
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> show sel cartoons
> hide sel atoms
> select
> #1.1/K#1.2/K#1.3/K#1.4/K#1.5/K#1.6/K#1.7/K#1.8/K#1.9/K#1.10/K#1.11/K#1.12/K#1.13/K#1.14/K#1.15/K#1.16/K#1.17/K#1.18/K#1.19/K#1.20/K#1.21/K#1.22/K#1.23/K#1.24/K#1.25/K#1.26/K#1.27/K#1.28/K#1.29/K#1.30/K#1.31/K#1.32/K#1.33/K#1.34/K#1.35/K#1.36/K#1.37/K#1.38/K#1.39/K#1.40/K#1.41/K#1.42/K#1.43/K#1.44/K#1.45/K#1.46/K#1.47/K#1.48/K#1.49/K#1.50/K#1.51/K#1.52/K#1.53/K#1.54/K#1.55/K#1.56/K#1.57/K#1.58/K#1.59/K#1.60/K
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> show sel cartoons
> show sel atoms
> hide sel atoms
> select
> #1.1/K#1.2/K#1.3/K#1.4/K#1.5/K#1.6/K#1.7/K#1.8/K#1.9/K#1.10/K#1.11/K#1.12/K#1.13/K#1.14/K#1.15/K#1.16/K#1.17/K#1.18/K#1.19/K#1.20/K#1.21/K#1.22/K#1.23/K#1.24/K#1.25/K#1.26/K#1.27/K#1.28/K#1.29/K#1.30/K#1.31/K#1.32/K#1.33/K#1.34/K#1.35/K#1.36/K#1.37/K#1.38/K#1.39/K#1.40/K#1.41/K#1.42/K#1.43/K#1.44/K#1.45/K#1.46/K#1.47/K#1.48/K#1.49/K#1.50/K#1.51/K#1.52/K#1.53/K#1.54/K#1.55/K#1.56/K#1.57/K#1.58/K#1.59/K#1.60/K
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> show sel cartoons
> hide sel atoms
> select
> #1.1/L#1.2/L#1.3/L#1.4/L#1.5/L#1.6/L#1.7/L#1.8/L#1.9/L#1.10/L#1.11/L#1.12/L#1.13/L#1.14/L#1.15/L#1.16/L#1.17/L#1.18/L#1.19/L#1.20/L#1.21/L#1.22/L#1.23/L#1.24/L#1.25/L#1.26/L#1.27/L#1.28/L#1.29/L#1.30/L#1.31/L#1.32/L#1.33/L#1.34/L#1.35/L#1.36/L#1.37/L#1.38/L#1.39/L#1.40/L#1.41/L#1.42/L#1.43/L#1.44/L#1.45/L#1.46/L#1.47/L#1.48/L#1.49/L#1.50/L#1.51/L#1.52/L#1.53/L#1.54/L#1.55/L#1.56/L#1.57/L#1.58/L#1.59/L#1.60/L
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> show sel cartoons
> hide sel atoms
> select clear
> save "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIV
> structure.cxs"
——— End of log from Wed Feb 22 17:41:22 2023 ———
opened ChimeraX session
> set bgColor white
> select
> #1.1/I#1.2/I#1.3/I#1.4/I#1.5/I#1.6/I#1.7/I#1.8/I#1.9/I#1.10/I#1.11/I#1.12/I#1.13/I#1.14/I#1.15/I#1.16/I#1.17/I#1.18/I#1.19/I#1.20/I#1.21/I#1.22/I#1.23/I#1.24/I#1.25/I#1.26/I#1.27/I#1.28/I#1.29/I#1.30/I#1.31/I#1.32/I#1.33/I#1.34/I#1.35/I#1.36/I#1.37/I#1.38/I#1.39/I#1.40/I#1.41/I#1.42/I#1.43/I#1.44/I#1.45/I#1.46/I#1.47/I#1.48/I#1.49/I#1.50/I#1.51/I#1.52/I#1.53/I#1.54/I#1.55/I#1.56/I#1.57/I#1.58/I#1.59/I#1.60/I
69300 atoms, 70860 bonds, 9060 residues, 60 models selected
> hide sel cartoons
> select
> #1.1/J#1.2/J#1.3/J#1.4/J#1.5/J#1.6/J#1.7/J#1.8/J#1.9/J#1.10/J#1.11/J#1.12/J#1.13/J#1.14/J#1.15/J#1.16/J#1.17/J#1.18/J#1.19/J#1.20/J#1.21/J#1.22/J#1.23/J#1.24/J#1.25/J#1.26/J#1.27/J#1.28/J#1.29/J#1.30/J#1.31/J#1.32/J#1.33/J#1.34/J#1.35/J#1.36/J#1.37/J#1.38/J#1.39/J#1.40/J#1.41/J#1.42/J#1.43/J#1.44/J#1.45/J#1.46/J#1.47/J#1.48/J#1.49/J#1.50/J#1.51/J#1.52/J#1.53/J#1.54/J#1.55/J#1.56/J#1.57/J#1.58/J#1.59/J#1.60/J
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> hide sel cartoons
> select
> #1.1/K#1.2/K#1.3/K#1.4/K#1.5/K#1.6/K#1.7/K#1.8/K#1.9/K#1.10/K#1.11/K#1.12/K#1.13/K#1.14/K#1.15/K#1.16/K#1.17/K#1.18/K#1.19/K#1.20/K#1.21/K#1.22/K#1.23/K#1.24/K#1.25/K#1.26/K#1.27/K#1.28/K#1.29/K#1.30/K#1.31/K#1.32/K#1.33/K#1.34/K#1.35/K#1.36/K#1.37/K#1.38/K#1.39/K#1.40/K#1.41/K#1.42/K#1.43/K#1.44/K#1.45/K#1.46/K#1.47/K#1.48/K#1.49/K#1.50/K#1.51/K#1.52/K#1.53/K#1.54/K#1.55/K#1.56/K#1.57/K#1.58/K#1.59/K#1.60/K
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> hide sel cartoons
> select
> #1.1/L#1.2/L#1.3/L#1.4/L#1.5/L#1.6/L#1.7/L#1.8/L#1.9/L#1.10/L#1.11/L#1.12/L#1.13/L#1.14/L#1.15/L#1.16/L#1.17/L#1.18/L#1.19/L#1.20/L#1.21/L#1.22/L#1.23/L#1.24/L#1.25/L#1.26/L#1.27/L#1.28/L#1.29/L#1.30/L#1.31/L#1.32/L#1.33/L#1.34/L#1.35/L#1.36/L#1.37/L#1.38/L#1.39/L#1.40/L#1.41/L#1.42/L#1.43/L#1.44/L#1.45/L#1.46/L#1.47/L#1.48/L#1.49/L#1.50/L#1.51/L#1.52/L#1.53/L#1.54/L#1.55/L#1.56/L#1.57/L#1.58/L#1.59/L#1.60/L
69420 atoms, 71100 bonds, 9060 residues, 60 models selected
> hide sel cartoons
> select #1.47/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.36/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.40/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.35/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.34/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.48/J
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.47/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.36/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.35/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.40/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.34/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.48/L
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.37/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.48/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.36/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.31/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.35/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> select #1.49/K
1157 atoms, 1185 bonds, 151 residues, 1 model selected
> show sel cartoons
> save "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIKV 3
> fold axis between hexamers.cxs"
> ui mousemode right translate
> ui tool show "Show Sequence Viewer"
> sequence chain #1.36/L
Alignment identifier is 1.36/L
> select #1.36/L:155
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:155-157
26 atoms, 25 bonds, 3 residues, 1 model selected
> select #1.36/L:118-119
19 atoms, 19 bonds, 2 residues, 1 model selected
> select #1.36/L:118-124
56 atoms, 56 bonds, 7 residues, 1 model selected
> style sel stick
Changed 56 atom styles
> show sel atoms
> hide sel atoms
> select #1.36/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> select #1.36/L:136-137
16 atoms, 16 bonds, 2 residues, 1 model selected
> select #1.36/L:136-140
38 atoms, 39 bonds, 5 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #1.35/L
Alignment identifier is 1.35/L
> select #1.35/L:137
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.35/L:137-142
42 atoms, 43 bonds, 6 residues, 1 model selected
> select #1.35/L:147
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1.35/L:147-151
35 atoms, 34 bonds, 5 residues, 1 model selected
> select #1.35/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.35/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> style sel stick
Changed 8 atom styles
> show sel atoms
> select #1.35/L:150
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1.35/L:150-151
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #1.35/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.35/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1.35/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.35/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel blue
> select #1.36/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:120-121
13 atoms, 12 bonds, 2 residues, 1 model selected
> color sel red
> color sel orange red
> select clear
> ui mousemode right "tape measure"
> ui mousemode right "tape measure"
> marker segment #2 position -184.2,56.06,-7.722 toPosition
> -180.9,64.06,-11.94 color yellow radius 0.1 label 9.599 labelHeight 0.9599
> labelColor yellow
> ui mousemode right translate
> ui mousemode right label
> label #1.36/L:120
> label #1.35/L:151
> label delete residues
> ui mousemode right translate
> ui mousemode right label
> label #1.35/L:151
> label #1.36/L:120
> ui mousemode right "tape measure"
> marker delete #2
> ui mousemode right distance
> ui mousemode right distance
> distance #1.36/L:120@OE1 #1.36/L:120@CD
Distance between 6nk5.pdb1 #1.36/L GLU 120 OE1 and CD: 1.246Å
> hide #2.1 models
> ui mousemode right "tape measure"
> ui mousemode right translate
> ui mousemode right "tape measure"
> marker segment #3 position -183.5,55.54,-8.97 toPosition -180.4,63.78,-12.66
> color yellow radius 0.1 label 9.54 labelHeight 0.954 labelColor yellow
> ui mousemode right translate
> save /Users/mauriciocomas/Desktop/image15.png supersample 3
> ui mousemode right translate
> save /Users/mauriciocomas/Desktop/image16.png supersample 3
> ui tool show "Show Sequence Viewer"
> sequence chain #1.48/L
Alignment identifier is 1.48/L
> select #1.48/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel orange red
> ui mousemode right label
> label #1.48/L:120
> ui tool show "Show Sequence Viewer"
> sequence chain #1.36/L
Alignment identifier is 1.36/L
> select #1.36/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel medium blue
> ui mousemode right label
> label #1.36/L:151
> ui mousemode right "tape measure"
> marker delete #3
> select #1.48/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel blue
> style sel stick
Changed 9 atom styles
> show sel atoms
> ui mousemode right label
> label delete residues
> label #1.48/L:151
> label #1.48/L:120
> label #1.36/L:151
> label #1.36/L:120
> label #1.35/L:151
> ui tool show "Show Sequence Viewer"
> sequence chain #1.35/L
Alignment identifier is 1.35/L
> select #1.35/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.35/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel orange red
> label #1.35/L:120
> ui mousemode right translate
> ui mousemode right "tape measure"
> ui mousemode right "tape measure"
> ui mousemode right translate
> select clear
> save /Users/mauriciocomas/Desktop/image17.png supersample 3
> save "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIKV 3
> fold axis between hexamers.cxs"
——— End of log from Tue Feb 28 17:25:17 2023 ———
opened ChimeraX session
> ui mousemode right select
> select #1.36/L:120
9 atoms, 8 bonds, 1 pseudobond, 1 residue, 2 models selected
> color (#!1.36 & sel) red
> select #1.48/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel red
> select #1.35/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel red
> select clear
> ui mousemode right distance
> ui mousemode right translate
> ui mousemode right distance
> distance #1.36/L:120@CB #1.36/L:120@CG
Distance between 6nk5.pdb1 #1.36/L GLU 120 CB and CG: 1.538Å
> distance #1.36/L:120@CD #1.36/L:120@CB
Distance between 6nk5.pdb1 #1.36/L GLU 120 CD and CB: 2.528Å
> ~distance #1.36/L:120@CD #1.36/L:120@CB
> distance #1.36/L:120@CB #1.35/L:151@CA
Distance between 6nk5.pdb1 #1.36/L GLU 120 CB and 6nk5.pdb1 #1.35/L LYS 151
CA: 13.558Å
> distance #1.36/L:120@CD #1.35/L:151@CE
Distance between 6nk5.pdb1 #1.36/L GLU 120 CD and 6nk5.pdb1 #1.35/L LYS 151
CE: 9.509Å
> ~distance #1.36/L:120@CB #1.35/L:151@CA
> ui mousemode right translate
> ui mousemode right distance
> distance #1.36/L:151@CE #1.48/L:120@CD
Distance between 6nk5.pdb1 #1.36/L LYS 151 CE and 6nk5.pdb1 #1.48/L GLU 120
CD: 9.510Å
> ui mousemode right translate
> ui mousemode right distance
> distance #1.35/L:120@CD #1.48/L:151@CE
Distance between 6nk5.pdb1 #1.35/L GLU 120 CD and 6nk5.pdb1 #1.48/L LYS 151
CE: 9.510Å
> ui mousemode right translate
> save /Users/mauriciocomas/Desktop/image5.png supersample 3
> ui mousemode right "move label"
> save /Users/mauriciocomas/Desktop/image6.png supersample 3
> ui mousemode right translate
> ui tool show "Show Sequence Viewer"
> sequence chain #1.48/J
Alignment identifier is 1.48/J
> select #1.48/J:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/J:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel blue
> ui tool show "Show Sequence Viewer"
> sequence chain #1.48/K
Alignment identifier is 1.48/K
> select #1.48/K:131
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:131
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:132
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/K:132
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/K:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel red
> ui mousemode right label
> label #1.48/J:151
> ui mousemode right "move label"
> ui mousemode right label
> label #1.48/K:120
> ui mousemode right "move label"
> ui mousemode right distance
> ui mousemode right translate
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right distance
> distance #1.48/K:120@OE1 #1.48/J:151@CD
Distance between 6nk5.pdb1 #1.48/K GLU 120 OE1 and /J LYS 151 CD: 10.822Å
> ui mousemode right rotate
> ui mousemode right distance
> distance #1.48/J:151@CE #1.48/K:120@OE1
Distance between 6nk5.pdb1 #1.48/J LYS 151 CE and /K GLU 120 OE1: 9.490Å
> ~distance #1.48/K:120@OE1 #1.48/J:151@CD
> select clear
> ui mousemode right translate
> ui mousemode right rotate
> ui mousemode right translate
> save /Users/mauriciocomas/Desktop/image7.png supersample 3
> save "/Users/mauriciocomas/Documents/UASLP/Chikungunya/Structures/CHIKV 3
> fold axis between hexamers.cxs"
——— End of log from Thu Mar 9 17:10:26 2023 ———
opened ChimeraX session
> ui mousemode right select
Drag select of 14 residues
> ui tool show "Show Sequence Viewer"
> sequence chain #1.48/L
Alignment identifier is 1.48/L
> ui tool show "Show Sequence Viewer"
> sequence chain #1.48/K
Alignment identifier is 1.48/K
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel blue
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:212-213
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:208-209
13 atoms, 12 bonds, 2 residues, 1 model selected
> select #1.48/L:200
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.48/L:200
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/L:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> style sel stick
Changed 7 atom styles
> show sel atoms
> color sel orange
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:229-230
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #1.48/L:229-232
21 atoms, 20 bonds, 4 residues, 1 model selected
> select #1.48/L:238
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/L:238-241
26 atoms, 25 bonds, 4 residues, 1 model selected
> select #1.48/L:226
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1.48/L:226-230
32 atoms, 31 bonds, 5 residues, 1 model selected
> select #1.48/L:261
15 atoms, 16 bonds, 1 residue, 1 model selected
> select #1.48/L:261
15 atoms, 16 bonds, 1 residue, 1 model selected
> select #1.48/L:163-164
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #1.48/L:163-165
20 atoms, 19 bonds, 3 residues, 1 model selected
> select
> #1.48/L:118-119,122-123,129-130,133-134,155-157,162-166,185-189,192-197,200-204,216-218,224-233,237-245,250-253,259-260
476 atoms, 474 bonds, 60 residues, 1 model selected
> select clear
Drag select of 33 residues
> select #1.48/K:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/K:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/K:211
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:211
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:213
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1.48/K:213-214
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #1.48/K:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel blue
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> style sel stick
Changed 7 atom styles
> show sel atoms
> color sel orange
> select #1.48/L:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right translate
> select #1.48/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:120
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:118
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:118
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:122
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:122-123
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1.48/L:122
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:122
9 atoms, 8 bonds, 1 residue, 1 model selected
> style sel stick
Changed 9 atom styles
> show sel atoms
> color sel blue
> ui tool show "Show Sequence Viewer"
> sequence chain #1.36/A
Alignment identifier is 1.36/A
> ui tool show "Show Sequence Viewer"
> sequence chain #1.36/L
Alignment identifier is 1.36/L
> select #1.36/L:155
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:155
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:151
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.36/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.36/L:148
8 atoms, 7 bonds, 1 residue, 1 model selected
> style sel stick
Changed 8 atom styles
> show sel atoms
> color sel red
> select #1.48/K:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:149-202
439 atoms, 453 bonds, 54 residues, 1 model selected
> select #1.48/K:149-204
454 atoms, 469 bonds, 56 residues, 1 model selected
> select #1.48/K:158
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1.48/K:158
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1.48/K:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:159-160
21 atoms, 21 bonds, 2 residues, 1 model selected
> select #1.48/K:168-169
14 atoms, 14 bonds, 2 residues, 1 model selected
> select #1.48/K:168-169
14 atoms, 14 bonds, 2 residues, 1 model selected
> ui mousemode right select
> select clear
> select clear
> select #1.48/K:206
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:206
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:206-208
13 atoms, 12 bonds, 3 residues, 1 model selected
> select #1.48/K:231
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:260
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:259
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:259-260
18 atoms, 17 bonds, 2 residues, 1 model selected
> style sel stick
Changed 18 atom styles
> show sel atoms
> color sel red
> select #1.48/L:247
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:247-248
17 atoms, 16 bonds, 2 residues, 1 model selected
> select #1.48/L:172-231
455 atoms, 469 bonds, 60 residues, 1 model selected
> select #1.48/L:172-231
455 atoms, 469 bonds, 60 residues, 1 model selected
> select #1.48/L:237
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.48/L:237
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.48/L:256
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:256
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:259
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:259-260
18 atoms, 17 bonds, 2 residues, 1 model selected
> style sel stick
Changed 18 atom styles
> show sel atoms
> color sel red
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right select
> select #1.48/L:233
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:234
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:234
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui mousemode right label
> label #1.48/L:209
> label #1.48/K:205
> label #1.48/L:205
> label #1.48/K:209
> ui mousemode right "move label"
> ui mousemode right select
> select #1.48/L:210
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right zoom
> ui mousemode right select
Drag select of 130 residues, 38 atoms, 31 bonds
> surface sel
Drag select of 6nk5.pdb1_L SES surface, 7658 of 147968 triangles, 6nk5.pdb1_J
SES surface, 2806 of 150990 triangles, 6nk5.pdb1_K SES surface, 11541 of
156762 triangles, 6nk5.pdb1_L SES surface, 17080 of 149788 triangles, 45
atoms, 143 residues, 37 bonds, 1 pseudobonds
> surface (#!1.36,48 & sel)
> ui mousemode right zoom
> ui mousemode right select
Drag select of 6nk5.pdb1_L SES surface, 13802 of 147968 triangles, 6nk5.pdb1_J
SES surface, 4114 of 150990 triangles, 6nk5.pdb1_K SES surface, 103269 of
156762 triangles, 6nk5.pdb1_L SES surface, 21603 of 149788 triangles, 79
atoms, 324 residues, 65 bonds, 2 pseudobonds
> surface (#!1.36,47-48 & sel)
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right select
> select #1.48/L:210@CB
1 atom, 1 residue, 1 model selected
> select #1.48/L:210@CB
1 atom, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/L:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!1.48 & sel) blue
> select #1.48/L:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/L:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> color (#!1.48 & sel) orange
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:205
7 atoms, 6 bonds, 1 residue, 1 model selected
> color (#!1.48 & sel) orange
> select #1.48/K:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.48/K:209
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!1.48 & sel) blue
> ui mousemode right select
> select #1.48/L:210@CG
1 atom, 1 residue, 1 model selected
> select #1.48/L:210@CB
1 atom, 1 residue, 1 model selected
> select #1.48/L:212
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/L:212-213
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #1.48/L:209-210
16 atoms, 16 bonds, 2 residues, 1 model selected
> select #1.48/L:210-211
11 atoms, 11 bonds, 2 residues, 1 model selected
> color (#!1.48 & sel) dim gray
> select #1.48/L:206@CA
1 atom, 1 residue, 1 model selected
> select #1.48/L:206
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/L:206-208
13 atoms, 12 bonds, 3 residues, 1 model selected
> color (#!1.48 & sel) dark gray
> color (#!1.48 & sel) gray
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> select #1.48/K:206
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.48/K:206-208
13 atoms, 12 bonds, 3 residues, 1 model selected
> color (#!1.48 & sel) gray
> select #1.48/K:210
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.48/K:210-211
11 atoms, 11 bonds, 2 residues, 1 model selected
> color (#!1.48 & sel) gray
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right select
> select #1.48/K:259@CD
1 atom, 1 residue, 1 model selected
> select #1.48/K:232@CA
1 atom, 1 residue, 1 model selected
> select #1.48/K:228
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:228-230
19 atoms, 18 bonds, 3 residues, 1 model selected
> select #1.48/K:224
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.48/K:224-231
50 atoms, 49 bonds, 8 residues, 1 model selected
> save "/Users/mauriciocomas/OneDrive - Universidad Autonoma de San Luis
> Potosi - UASLP/Lab Comas Garcia/Lab Virologia/CHIKV Assembly/Chimera X
> sessions/CHIKV 3 fold hexamers surface.cxs"
——— End of log from Fri Nov 3 13:20:21 2023 ———
opened ChimeraX session
> ui mousemode right label
> label delete residues
[Repeated 1 time(s)]
> ui mousemode right select
> select clear
> hide #!2 models
Drag select of 6nk5.pdb1_L SES surface, 58115 of 147968 triangles, 6nk5.pdb1_J
SES surface, 2769 of 152270 triangles, 6nk5.pdb1_J SES surface, 30501 of
150990 triangles, 6nk5.pdb1_K SES surface, 6nk5.pdb1_L SES surface, 83347 of
149788 triangles, 2718 residues, 103 atoms, 85 bonds
> surface (#!1.31,34-37,40,47-49 & sel)
> ui tool show "Color Actions"
> color sel bychain
> save "/Users/mauriciocomas/Desktop/chik 3 hexamers.pdb" displayedOnly true
> selectedOnly true
> save "/Users/mauriciocomas/Desktop/chik 3 hexamers.cxs"
——— End of log from Tue May 21 15:43:36 2024 ———
opened ChimeraX session
No model chosen to save relative to
> save "/Users/mauriciocomas/Desktop/CHIKV 3 hexamers.cif" displayedOnly true
> selectedOnly true relModel #1.35.2
Not saving entity_poly_seq for non-authoritative sequences
Fetching CCD NAG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/NAG/NAG.cif
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 127, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 138, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 62, in display
run(session, cmd)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2904, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2904, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/mmcif/__init__.py", line 128, in save
mmcif_write.write_mmcif(session, path, **kw)
File "src/mmcif_write.pyx", line 168, in
chimerax.mmcif.mmcif_write.write_mmcif
File "src/mmcif_write.pyx", line 172, in
chimerax.mmcif.mmcif_write.write_mmcif
File "src/mmcif_write.pyx", line 907, in
chimerax.mmcif.mmcif_write.save_structure
File "src/mmcif_write.pyx", line 99, in chimerax.mmcif.mmcif_write._rdisplayed
AttributeError: 'Residue' object has no attribute 'ribbon_displayed'
AttributeError: 'Residue' object has no attribute 'ribbon_displayed'
File "src/mmcif_write.pyx", line 99, in chimerax.mmcif.mmcif_write._rdisplayed
See log for complete Python traceback.
OpenGL version: 4.1 INTEL-20.7.2
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 529.120.1.0.0
OS Loader Version: 577.140.2~22
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 13.6.7 (22G720)
Kernel Version: Darwin 22.6.0
Time since boot: 1 day, 4 hours, 47 minutes
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
HP 22y:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 1CR8320DS2
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: Apple USB-C VGA Adapter
Adapter Firmware Version: 1.91
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.14.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.1.1
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.16
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.5
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.56
ChimeraX-AtomicLibrary: 14.0.2
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8.dev202403210048
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.3
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.37.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.9
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.1
fonttools: 4.50.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.10.0
html2text: 2024.2.26
idna: 3.6
ihm: 0.43
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.1.0
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.3
matplotlib-inline: 0.1.6
msgpack: 1.0.8
ndindex: 1.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.2.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.9.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.3
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.2.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.0
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.3.0
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3302
pyparsing: 3.1.2
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.2
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.2
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 25.1.2
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.12.0
setuptools: 69.2.0
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.0
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.1
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
traitlets: 5.14.1
typing-extensions: 4.10.0
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
Change History (2)
comment:1 by , 18 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Write mmCIF: 'Residue' object has no attribute 'ribbon_displayed' |
comment:2 by , 18 months ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
It was reproducible with: