Opened 17 months ago
Closed 17 months ago
#15256 closed defect (fixed)
MD/DCD: "USER" environment variable not available on Windows
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | MD/Ensemble Analysis | Version: | |
Keywords: | Cc: | Greg Couch | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.22631 ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Users/Shubham/Documents/traj/B1G1.pdb Chain information for B1G1.pdb --- Chain | Description 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B 1.21/B 1.22/B 1.23/B 1.24/B 1.25/B 1.26/B 1.27/B 1.28/B 1.29/B 1.30/B 1.31/B 1.32/B 1.33/B 1.34/B 1.35/B 1.36/B 1.37/B 1.38/B 1.39/B 1.40/B 1.41/B 1.42/B 1.43/B 1.44/B 1.45/B 1.46/B 1.47/B 1.48/B 1.49/B 1.50/B 1.51/B 1.52/B 1.53/B 1.54/B 1.55/B 1.56/B 1.57/B 1.58/B 1.59/B 1.60/B 1.61/B 1.62/B 1.63/B 1.64/B 1.65/B 1.66/B 1.67/B 1.68/B 1.69/B 1.70/B 1.71/B 1.72/B 1.73/B 1.74/B 1.75/B 1.76/B 1.77/B 1.78/B 1.79/B 1.80/B 1.81/B 1.82/B 1.83/B 1.84/B 1.85/B 1.86/B 1.87/B 1.88/B 1.89/B 1.90/B 1.91/B 1.92/B 1.93/B 1.94/B 1.95/B 1.96/B 1.97/B 1.98/B 1.99/B 1.100/B 1.101/B 1.102/B 1.103/B 1.104/B 1.105/B 1.106/B 1.107/B 1.108/B 1.109/B 1.110/B 1.111/B 1.112/B 1.113/B 1.114/B 1.115/B 1.116/B 1.117/B 1.118/B 1.119/B 1.120/B 1.121/B 1.122/B 1.123/B 1.124/B 1.125/B 1.126/B 1.127/B 1.128/B 1.129/B 1.130/B 1.131/B 1.132/B 1.133/B 1.134/B 1.135/B 1.136/B 1.137/B 1.138/B 1.139/B 1.140/B 1.141/B 1.142/B 1.143/B 1.144/B 1.145/B 1.146/B 1.147/B 1.148/B 1.149/B 1.150/B 1.151/B 1.152/B 1.153/B 1.154/B 1.155/B 1.156/B 1.157/B 1.158/B 1.159/B 1.160/B 1.161/B 1.162/B 1.163/B 1.164/B 1.165/B 1.166/B 1.167/B 1.168/B 1.169/B 1.170/B 1.171/B 1.172/B 1.173/B 1.174/B 1.175/B 1.176/B 1.177/B 1.178/B 1.179/B 1.180/B 1.181/B 1.182/B 1.183/B 1.184/B 1.185/B 1.186/B 1.187/B 1.188/B 1.189/B 1.190/B 1.191/B 1.192/B 1.193/B 1.194/B 1.195/B 1.196/B 1.197/B 1.198/B 1.199/B 1.200/B 1.201/B 1.202/B 1.203/B 1.204/B 1.205/B 1.206/B 1.207/B 1.208/B 1.209/B 1.210/B 1.211/B 1.212/B 1.213/B 1.214/B 1.215/B 1.216/B 1.217/B 1.218/B 1.219/B 1.220/B 1.221/B 1.222/B 1.223/B 1.224/B 1.225/B 1.226/B 1.227/B 1.228/B 1.229/B 1.230/B 1.231/B 1.232/B 1.233/B 1.234/B 1.235/B 1.236/B 1.237/B 1.238/B 1.239/B 1.240/B 1.241/B 1.242/B 1.243/B 1.244/B 1.245/B 1.246/B 1.247/B 1.248/B 1.249/B 1.250/B 1.251/B 1.252/B 1.253/B 1.254/B 1.255/B 1.256/B 1.257/B 1.258/B 1.259/B 1.260/B 1.261/B 1.262/B 1.263/B 1.264/B 1.265/B 1.266/B 1.267/B 1.268/B 1.269/B 1.270/B 1.271/B 1.272/B 1.273/B 1.274/B 1.275/B 1.276/B 1.277/B 1.278/B 1.279/B 1.280/B 1.281/B 1.282/B 1.283/B 1.284/B 1.285/B 1.286/B 1.287/B 1.288/B 1.289/B 1.290/B 1.291/B 1.292/B 1.293/B 1.294/B 1.295/B 1.296/B 1.297/B 1.298/B 1.299/B 1.300/B 1.301/B 1.302/B 1.303/B 1.304/B 1.305/B 1.306/B 1.307/B 1.308/B 1.309/B 1.310/B 1.311/B 1.312/B 1.313/B 1.314/B 1.315/B 1.316/B 1.317/B 1.318/B 1.319/B 1.320/B 1.321/B 1.322/B 1.323/B 1.324/B 1.325/B 1.326/B 1.327/B 1.328/B 1.329/B 1.330/B 1.331/B 1.332/B 1.333/B 1.334/B 1.335/B 1.336/B 1.337/B 1.338/B 1.339/B 1.340/B 1.341/B 1.342/B 1.343/B 1.344/B 1.345/B 1.346/B 1.347/B 1.348/B 1.349/B 1.350/B 1.351/B 1.352/B 1.353/B 1.354/B 1.355/B 1.356/B 1.357/B 1.358/B 1.359/B 1.360/B 1.361/B 1.362/B 1.363/B 1.364/B 1.365/B 1.366/B 1.367/B 1.368/B 1.369/B 1.370/B 1.371/B 1.372/B 1.373/B 1.374/B 1.375/B 1.376/B 1.377/B 1.378/B 1.379/B 1.380/B 1.381/B 1.382/B 1.383/B 1.384/B 1.385/B 1.386/B 1.387/B 1.388/B 1.389/B 1.390/B 1.391/B 1.392/B 1.393/B 1.394/B 1.395/B 1.396/B 1.397/B 1.398/B 1.399/B 1.400/B 1.401/B 1.402/B 1.403/B 1.404/B 1.405/B 1.406/B 1.407/B 1.408/B 1.409/B 1.410/B 1.411/B 1.412/B 1.413/B 1.414/B 1.415/B 1.416/B 1.417/B 1.418/B 1.419/B 1.420/B 1.421/B 1.422/B 1.423/B 1.424/B 1.425/B 1.426/B 1.427/B 1.428/B 1.429/B 1.430/B 1.431/B 1.432/B 1.433/B 1.434/B 1.435/B 1.436/B 1.437/B 1.438/B 1.439/B 1.440/B 1.441/B 1.442/B 1.443/B 1.444/B 1.445/B 1.446/B 1.447/B 1.448/B 1.449/B 1.450/B 1.451/B 1.452/B 1.453/B 1.454/B 1.455/B 1.456/B 1.457/B 1.458/B 1.459/B 1.460/B 1.461/B 1.462/B 1.463/B 1.464/B 1.465/B 1.466/B 1.467/B 1.468/B 1.469/B 1.470/B 1.471/B 1.472/B 1.473/B 1.474/B 1.475/B 1.476/B 1.477/B 1.478/B 1.479/B 1.480/B 1.481/B 1.482/B 1.483/B 1.484/B 1.485/B 1.486/B 1.487/B 1.488/B 1.489/B 1.490/B 1.491/B 1.492/B 1.493/B 1.494/B 1.495/B 1.496/B 1.497/B 1.498/B 1.499/B 1.500/B | No description available 1.1/G 1.2/G 1.3/G 1.4/G 1.5/G 1.6/G 1.7/G 1.8/G 1.9/G 1.10/G 1.11/G 1.12/G 1.13/G 1.14/G 1.15/G 1.16/G 1.17/G 1.18/G 1.19/G 1.20/G 1.21/G 1.22/G 1.23/G 1.24/G 1.25/G 1.26/G 1.27/G 1.28/G 1.29/G 1.30/G 1.31/G 1.32/G 1.33/G 1.34/G 1.35/G 1.36/G 1.37/G 1.38/G 1.39/G 1.40/G 1.41/G 1.42/G 1.43/G 1.44/G 1.45/G 1.46/G 1.47/G 1.48/G 1.49/G 1.50/G 1.51/G 1.52/G 1.53/G 1.54/G 1.55/G 1.56/G 1.57/G 1.58/G 1.59/G 1.60/G 1.61/G 1.62/G 1.63/G 1.64/G 1.65/G 1.66/G 1.67/G 1.68/G 1.69/G 1.70/G 1.71/G 1.72/G 1.73/G 1.74/G 1.75/G 1.76/G 1.77/G 1.78/G 1.79/G 1.80/G 1.81/G 1.82/G 1.83/G 1.84/G 1.85/G 1.86/G 1.87/G 1.88/G 1.89/G 1.90/G 1.91/G 1.92/G 1.93/G 1.94/G 1.95/G 1.96/G 1.97/G 1.98/G 1.99/G 1.100/G 1.101/G 1.102/G 1.103/G 1.104/G 1.105/G 1.106/G 1.107/G 1.108/G 1.109/G 1.110/G 1.111/G 1.112/G 1.113/G 1.114/G 1.115/G 1.116/G 1.117/G 1.118/G 1.119/G 1.120/G 1.121/G 1.122/G 1.123/G 1.124/G 1.125/G 1.126/G 1.127/G 1.128/G 1.129/G 1.130/G 1.131/G 1.132/G 1.133/G 1.134/G 1.135/G 1.136/G 1.137/G 1.138/G 1.139/G 1.140/G 1.141/G 1.142/G 1.143/G 1.144/G 1.145/G 1.146/G 1.147/G 1.148/G 1.149/G 1.150/G 1.151/G 1.152/G 1.153/G 1.154/G 1.155/G 1.156/G 1.157/G 1.158/G 1.159/G 1.160/G 1.161/G 1.162/G 1.163/G 1.164/G 1.165/G 1.166/G 1.167/G 1.168/G 1.169/G 1.170/G 1.171/G 1.172/G 1.173/G 1.174/G 1.175/G 1.176/G 1.177/G 1.178/G 1.179/G 1.180/G 1.181/G 1.182/G 1.183/G 1.184/G 1.185/G 1.186/G 1.187/G 1.188/G 1.189/G 1.190/G 1.191/G 1.192/G 1.193/G 1.194/G 1.195/G 1.196/G 1.197/G 1.198/G 1.199/G 1.200/G 1.201/G 1.202/G 1.203/G 1.204/G 1.205/G 1.206/G 1.207/G 1.208/G 1.209/G 1.210/G 1.211/G 1.212/G 1.213/G 1.214/G 1.215/G 1.216/G 1.217/G 1.218/G 1.219/G 1.220/G 1.221/G 1.222/G 1.223/G 1.224/G 1.225/G 1.226/G 1.227/G 1.228/G 1.229/G 1.230/G 1.231/G 1.232/G 1.233/G 1.234/G 1.235/G 1.236/G 1.237/G 1.238/G 1.239/G 1.240/G 1.241/G 1.242/G 1.243/G 1.244/G 1.245/G 1.246/G 1.247/G 1.248/G 1.249/G 1.250/G 1.251/G 1.252/G 1.253/G 1.254/G 1.255/G 1.256/G 1.257/G 1.258/G 1.259/G 1.260/G 1.261/G 1.262/G 1.263/G 1.264/G 1.265/G 1.266/G 1.267/G 1.268/G 1.269/G 1.270/G 1.271/G 1.272/G 1.273/G 1.274/G 1.275/G 1.276/G 1.277/G 1.278/G 1.279/G 1.280/G 1.281/G 1.282/G 1.283/G 1.284/G 1.285/G 1.286/G 1.287/G 1.288/G 1.289/G 1.290/G 1.291/G 1.292/G 1.293/G 1.294/G 1.295/G 1.296/G 1.297/G 1.298/G 1.299/G 1.300/G 1.301/G 1.302/G 1.303/G 1.304/G 1.305/G 1.306/G 1.307/G 1.308/G 1.309/G 1.310/G 1.311/G 1.312/G 1.313/G 1.314/G 1.315/G 1.316/G 1.317/G 1.318/G 1.319/G 1.320/G 1.321/G 1.322/G 1.323/G 1.324/G 1.325/G 1.326/G 1.327/G 1.328/G 1.329/G 1.330/G 1.331/G 1.332/G 1.333/G 1.334/G 1.335/G 1.336/G 1.337/G 1.338/G 1.339/G 1.340/G 1.341/G 1.342/G 1.343/G 1.344/G 1.345/G 1.346/G 1.347/G 1.348/G 1.349/G 1.350/G 1.351/G 1.352/G 1.353/G 1.354/G 1.355/G 1.356/G 1.357/G 1.358/G 1.359/G 1.360/G 1.361/G 1.362/G 1.363/G 1.364/G 1.365/G 1.366/G 1.367/G 1.368/G 1.369/G 1.370/G 1.371/G 1.372/G 1.373/G 1.374/G 1.375/G 1.376/G 1.377/G 1.378/G 1.379/G 1.380/G 1.381/G 1.382/G 1.383/G 1.384/G 1.385/G 1.386/G 1.387/G 1.388/G 1.389/G 1.390/G 1.391/G 1.392/G 1.393/G 1.394/G 1.395/G 1.396/G 1.397/G 1.398/G 1.399/G 1.400/G 1.401/G 1.402/G 1.403/G 1.404/G 1.405/G 1.406/G 1.407/G 1.408/G 1.409/G 1.410/G 1.411/G 1.412/G 1.413/G 1.414/G 1.415/G 1.416/G 1.417/G 1.418/G 1.419/G 1.420/G 1.421/G 1.422/G 1.423/G 1.424/G 1.425/G 1.426/G 1.427/G 1.428/G 1.429/G 1.430/G 1.431/G 1.432/G 1.433/G 1.434/G 1.435/G 1.436/G 1.437/G 1.438/G 1.439/G 1.440/G 1.441/G 1.442/G 1.443/G 1.444/G 1.445/G 1.446/G 1.447/G 1.448/G 1.449/G 1.450/G 1.451/G 1.452/G 1.453/G 1.454/G 1.455/G 1.456/G 1.457/G 1.458/G 1.459/G 1.460/G 1.461/G 1.462/G 1.463/G 1.464/G 1.465/G 1.466/G 1.467/G 1.468/G 1.469/G 1.470/G 1.471/G 1.472/G 1.473/G 1.474/G 1.475/G 1.476/G 1.477/G 1.478/G 1.479/G 1.480/G 1.481/G 1.482/G 1.483/G 1.484/G 1.485/G 1.486/G 1.487/G 1.488/G 1.489/G 1.490/G 1.491/G 1.492/G 1.493/G 1.494/G 1.495/G 1.496/G 1.497/G 1.498/G 1.499/G 1.500/G | No description available > save C:/Users/Shubham/Desktop/abc.dcd Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 127, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 2908, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 2908, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\md_crds\\__init__.py", line 155, in save write_coords(session, path, "dcd", models) File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\md_crds\write_coords.py", line 26, in write_coords dcd = DCDWrite(file_name, DCDAtoms(models[0].atoms)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\md_crds\dcd\MDToolsMarch97\md_DCD.py", line 420, in __init__ 'REMARKS DATE: '+time.ctime(time.time())+' CREATED BY USER: '+os.environ['USER']] ~~~~~~~~~~^^^^^^^^ File "<frozen os>", line 679, in __getitem__ KeyError: 'USER' KeyError: 'USER' File "", line 679, in __getitem__ See log for complete Python traceback. OpenGL version: 3.3.14830 Core Profile Forward-Compatible Context 21.10.20.04 27.20.21020.4003 OpenGL renderer: AMD Radeon(TM) Graphics OpenGL vendor: ATI Technologies Inc. Python: 3.11.2 Locale: en_IN.cp1252 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: HP Model: HP ENVY x360 Convertible 13-ay0xxx OS: Microsoft Windows 11 Home Single Language (Build 22631) Memory: 7,932,272,640 MaxProcessMemory: 137,438,953,344 CPU: 6 AMD Ryzen 5 4500U with Radeon Graphics OSLanguage: en-US Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 comtypes: 1.1.14 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 23.2 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pywin32: 305 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 WMI: 1.5.1
Change History (3)
comment:1 by , 17 months ago
Cc: | added |
---|---|
Component: | Unassigned → MD/Ensemble Analysis |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → MD/DCD: "USER" environment variable not available on Windows |
comment:2 by , 17 months ago
comment:3 by , 17 months ago
Resolution: | → fixed |
---|---|
Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
You could use USERNAME on Windows.