![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 years ago
Closed 7 years ago
#1517 closed defect (can't reproduce)
Crash while reading in a volume
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Volume Data | Version: | |
| Keywords: | Cc: | pett | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-11-21)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
slabbing a volume and then reading in a new one
Process: ChimeraX [63459]
Path: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.8.0 (0.8.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [63459]
User ID: 11188
Date/Time: 2018-12-09 09:47:27.984 +1300
OS Version: Mac OS X 10.13.6 (17G2307)
Report Version: 12
Bridge OS Version: 2.4.1 (15P6805)
Anonymous UUID: A34C0E7B-6367-81E6-1142-79AD777B5C28
Sleep/Wake UUID: C18AA174-6906-4AC4-B935-4CD8A738319A
Time Awake Since Boot: 280000 seconds
Time Since Wake: 5600 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000001
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x1:
-->
__TEXT 000000010405d000-000000010405e000 [ 4K] r-x/rwx SM=COW Ì [/Applications/ChimeraX.app/Contents/MacOS/ChimeraX]
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff75bffb66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff75dca080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff75b0d6fe raise + 26
3 libsystem_platform.dylib 0x00007fff75dbdf5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 cymol.so 0x00000001225626ed __pyx_getprop_8chimerax_6atomic_5cymol_9CyResidue_structure(_object*, void*) + 29
6 org.python.python 0x00000001040c01db _PyObject_GenericGetAttrWithDict + 171
7 org.python.python 0x00000001040d44ce slot_tp_getattr_hook + 302
8 org.python.python 0x000000010414348b _PyEval_EvalFrameDefault + 21931
9 org.python.python 0x000000010414752f fast_function + 511
10 org.python.python 0x0000000104146312 call_function + 434
11 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
12 org.python.python 0x000000010414752f fast_function + 511
13 org.python.python 0x0000000104146312 call_function + 434
14 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
15 org.python.python 0x000000010414752f fast_function + 511
16 org.python.python 0x0000000104146312 call_function + 434
17 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
18 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
19 org.python.python 0x00000001041474b2 fast_function + 386
20 org.python.python 0x0000000104146312 call_function + 434
21 org.python.python 0x000000010413f2ee _PyEval_EvalFrameDefault + 5134
22 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
23 org.python.python 0x000000010413de97 PyEval_EvalCodeEx + 55
24 org.python.python 0x000000010409c27e function_call + 350
25 org.python.python 0x0000000104074035 PyObject_Call + 101
26 org.python.python 0x000000010413f4e3 _PyEval_EvalFrameDefault + 5635
27 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
28 org.python.python 0x0000000104147835 _PyFunction_FastCallDict + 581
29 org.python.python 0x00000001040742da _PyObject_FastCallDict + 346
30 org.python.python 0x000000010407440c _PyObject_Call_Prepend + 156
31 org.python.python 0x0000000104074035 PyObject_Call + 101
32 org.python.python 0x000000010413f4e3 _PyEval_EvalFrameDefault + 5635
33 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
34 org.python.python 0x000000010413de97 PyEval_EvalCodeEx + 55
35 org.python.python 0x000000010409c27e function_call + 350
36 org.python.python 0x0000000104074035 PyObject_Call + 101
37 org.python.python 0x000000010413f4e3 _PyEval_EvalFrameDefault + 5635
38 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
39 org.python.python 0x000000010413de97 PyEval_EvalCodeEx + 55
40 org.python.python 0x000000010409c27e function_call + 350
41 org.python.python 0x0000000104074035 PyObject_Call + 101
42 org.python.python 0x000000010413f4e3 _PyEval_EvalFrameDefault + 5635
43 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
44 org.python.python 0x00000001041474b2 fast_function + 386
45 org.python.python 0x0000000104146312 call_function + 434
46 org.python.python 0x000000010413f2ee _PyEval_EvalFrameDefault + 5134
47 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
48 org.python.python 0x00000001041474b2 fast_function + 386
49 org.python.python 0x0000000104146312 call_function + 434
50 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
51 org.python.python 0x000000010414752f fast_function + 511
52 org.python.python 0x0000000104146312 call_function + 434
53 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
54 org.python.python 0x000000010414752f fast_function + 511
55 org.python.python 0x0000000104146312 call_function + 434
56 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
57 org.python.python 0x000000010414752f fast_function + 511
58 org.python.python 0x0000000104146312 call_function + 434
59 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
60 org.python.python 0x000000010414752f fast_function + 511
61 org.python.python 0x0000000104146312 call_function + 434
62 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
63 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
64 org.python.python 0x000000010413de97 PyEval_EvalCodeEx + 55
65 org.python.python 0x000000010409c27e function_call + 350
66 org.python.python 0x0000000104074035 PyObject_Call + 101
67 QtCore.so 0x000000011658b828 PyQtSlot::call(_object*, _object*) const + 40
68 QtCore.so 0x000000011658b727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
69 QtCore.so 0x000000011658c268 PyQtSlotProxy::unislot(void**) + 88
70 QtCore.so 0x000000011658c1da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
71 QtCore 0x00000001160f33d6 QMetaObject::activate(QObject*, int, int, void**) + 2230
72 QtWidgets 0x0000000115436345 QAction::activate(QAction::ActionEvent) + 309
73 QtCore 0x00000001160f36aa QMetaObject::activate(QObject*, int, int, void**) + 2954
74 QtCore 0x00000001160eb944 QObject::event(QEvent*) + 788
75 QtWidgets 0x000000011543fb82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
76 QtWidgets 0x0000000115440e9f QApplication::notify(QObject*, QEvent*) + 383
77 QtWidgets.so 0x0000000115011f8a sipQApplication::notify(QObject*, QEvent*) + 234
78 QtCore 0x00000001160c2a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
79 QtCore 0x00000001160c3c32 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 850
80 libqcocoa.dylib 0x000000011e8a8e8e 0x11e881000 + 163470
81 libqcocoa.dylib 0x000000011e8a9741 0x11e881000 + 165697
82 com.apple.CoreFoundation 0x00007fff4dba5a11 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
83 com.apple.CoreFoundation 0x00007fff4dc5f42c __CFRunLoopDoSource0 + 108
84 com.apple.CoreFoundation 0x00007fff4db88470 __CFRunLoopDoSources0 + 208
85 com.apple.CoreFoundation 0x00007fff4db878ed __CFRunLoopRun + 1293
86 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
87 com.apple.HIToolbox 0x00007fff4ce71d96 RunCurrentEventLoopInMode + 286
88 com.apple.HIToolbox 0x00007fff4ce71a0f ReceiveNextEventCommon + 366
89 com.apple.HIToolbox 0x00007fff4ce71884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
90 com.apple.AppKit 0x00007fff4b122a73 _DPSNextEvent + 2085
91 com.apple.AppKit 0x00007fff4b8b8e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
92 com.apple.AppKit 0x00007fff4b117885 -[NSApplication run] + 764
93 libqcocoa.dylib 0x000000011e8a853d 0x11e881000 + 161085
94 QtCore 0x00000001160be742 QEventLoop::exec(QFlags) + 418
95 QtCore 0x00000001160c3172 QCoreApplication::exec() + 402
96 QtWidgets.so 0x00000001150ffdc2 meth_QApplication_exec_(_object*, _object*) + 82
97 org.python.python 0x00000001040bcb06 _PyCFunction_FastCallDict + 166
98 org.python.python 0x0000000104146337 call_function + 471
99 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
100 org.python.python 0x000000010414752f fast_function + 511
101 org.python.python 0x0000000104146312 call_function + 434
102 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
103 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
104 org.python.python 0x00000001041474b2 fast_function + 386
105 org.python.python 0x0000000104146312 call_function + 434
106 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
107 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
108 org.python.python 0x000000010413de50 PyEval_EvalCode + 48
109 org.python.python 0x000000010413b63b builtin_exec + 555
110 org.python.python 0x00000001040bcb06 _PyCFunction_FastCallDict + 166
111 org.python.python 0x0000000104146337 call_function + 471
112 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
113 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
114 org.python.python 0x00000001041474b2 fast_function + 386
115 org.python.python 0x0000000104146312 call_function + 434
116 org.python.python 0x000000010413f25c _PyEval_EvalFrameDefault + 4988
117 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
118 org.python.python 0x000000010413de97 PyEval_EvalCodeEx + 55
119 org.python.python 0x000000010409c27e function_call + 350
120 org.python.python 0x0000000104074035 PyObject_Call + 101
121 org.python.python 0x000000010418cb53 RunModule + 147
122 org.python.python 0x000000010418c3ec Py_Main + 2588
123 edu.ucsf.cgl.ChimeraX 0x000000010405de16 main + 278
124 libdyld.dylib 0x00007fff75aaf015 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff4b25ffc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff75c0109a poll + 10
1 QtCore 0x0000000116115b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001161171b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x00000001160be742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000116c58c4a 0x116c37000 + 138314
5 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
6 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
7 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
8 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
9 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff75c00bea kevent + 10
1 QtWebEngineCore 0x0000000117d65469 0x116c37000 + 18015337
2 QtWebEngineCore 0x0000000117d6275d 0x116c37000 + 18003805
3 QtWebEngineCore 0x000000011785699f 0x116c37000 + 12712351
4 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
5 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
6 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
7 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
8 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 4:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x0000000116f24958 0x116c37000 + 3070296
10 QtWebEngineCore 0x0000000116f24d1f 0x116c37000 + 3071263
11 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
12 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
13 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 5:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff75c00bea kevent + 10
1 QtWebEngineCore 0x0000000117d65469 0x116c37000 + 18015337
2 QtWebEngineCore 0x0000000117d6275d 0x116c37000 + 18003805
3 QtWebEngineCore 0x000000011785699f 0x116c37000 + 12712351
4 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
5 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
6 QtWebEngineCore 0x0000000116f249d8 0x116c37000 + 3070424
7 QtWebEngineCore 0x0000000116f24d2f 0x116c37000 + 3071279
8 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
9 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
10 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 6:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x0000000116f24a58 0x116c37000 + 3070552
10 QtWebEngineCore 0x0000000116f24d3f 0x116c37000 + 3071295
11 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
12 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
13 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 7:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x0000000116f24ad8 0x116c37000 + 3070680
10 QtWebEngineCore 0x0000000116f24d4c 0x116c37000 + 3071308
11 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
12 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
13 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 8:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x0000000116f24b58 0x116c37000 + 3070808
10 QtWebEngineCore 0x0000000116f24d59 0x116c37000 + 3071321
11 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
12 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
13 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff75c00bea kevent + 10
1 QtWebEngineCore 0x0000000117d65469 0x116c37000 + 18015337
2 QtWebEngineCore 0x0000000117d6275d 0x116c37000 + 18003805
3 QtWebEngineCore 0x0000000117856986 0x116c37000 + 12712326
4 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
5 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
6 QtWebEngineCore 0x0000000116f24bd8 0x116c37000 + 3070936
7 QtWebEngineCore 0x0000000116f24d66 0x116c37000 + 3071334
8 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
9 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
10 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 10:: BrowserBlockingWorker1/61699
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x00000001178a6c1f 0x116c37000 + 13040671
3 QtWebEngineCore 0x00000001178a62e6 0x116c37000 + 13038310
4 QtWebEngineCore 0x00000001178aa18d 0x116c37000 + 13054349
5 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
6 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 11:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
10 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
11 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 12:: CompositorTileWorker1/69635
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x0000000118445cf8 0x116c37000 + 25226488
3 QtWebEngineCore 0x00000001178aa18d 0x116c37000 + 13054349
4 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
5 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
10 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
11 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff75bf620a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff75bf5724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4db88785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4db87ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4db87153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011785790f 0x116c37000 + 12716303
6 QtWebEngineCore 0x00000001178572a4 0x116c37000 + 12714660
7 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
8 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
9 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
10 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
11 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff75c00bea kevent + 10
1 QtWebEngineCore 0x0000000117d65469 0x116c37000 + 18015337
2 QtWebEngineCore 0x0000000117d6275d 0x116c37000 + 18003805
3 QtWebEngineCore 0x000000011785699f 0x116c37000 + 12712351
4 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
5 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
6 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
7 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
8 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff75c0109a poll + 10
1 QtCore 0x0000000116115b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001161171b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x00000001160be742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000116c58c4a 0x116c37000 + 138314
5 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
6 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
7 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
8 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
9 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff75c0109a poll + 10
1 QtCore 0x0000000116115b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001161171b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x00000001160be742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000116c58c4a 0x116c37000 + 138314
5 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
6 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
7 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
8 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
9 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff75c0109a poll + 10
1 QtCore 0x0000000116115b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001161171b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x00000001160be742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000116c58c4a 0x116c37000 + 138314
5 QtWebEngineCore 0x000000011785410e 0x116c37000 + 12701966
6 QtWebEngineCore 0x0000000117878531 0x116c37000 + 12850481
7 QtWebEngineCore 0x00000001178ac36b 0x116c37000 + 13063019
8 QtWebEngineCore 0x00000001178a5667 0x116c37000 + 13035111
9 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.0.dev.dylib 0x00000001052fb72b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.0.dev.dylib 0x00000001052fb72b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.0.dev.dylib 0x00000001052fb72b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 22:
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.0.dev.dylib 0x00000001052fb72b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.0.dev.dylib 0x00000001052fb72b blas_thread_server + 187
3 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 24:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff75bffa16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff75dc8589 _pthread_cond_wait + 732
2 QtCore 0x0000000115f0458b 0x115ed7000 + 185739
3 QtCore 0x0000000115f04522 QWaitCondition::wait(QMutex*, unsigned long) + 162
4 QtWidgets 0x0000000115665862 0x11542e000 + 2324578
5 QtCore 0x0000000115f02fbf 0x115ed7000 + 180159
6 libsystem_pthread.dylib 0x00007fff75dc7661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff75dc750d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff75dc6bf9 thread_start + 13
Thread 25:
0 libsystem_pthread.dylib 0x00007fff75dc6bdc start_wqthread + 0
1 ??? 0x2000000000000000 0 + 2305843009213693952
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffae151380 rcx: 0x000000010448ea48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010448ea80 rsp: 0x000000010448ea48
r8: 0x000000010448ef48 r9: 0x0000000000000000 r10: 0x00007fffae1513c8 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000000000000001 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff75bffb66 rfl: 0x0000000000000286 cr2: 0x00000001042ad060
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x1046ba000 - 0x1046f5ff7 +libqjpeg.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/plugins/imageformats/libqjpeg.dylib
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0x10470b000 - 0x10473fffb +QtSvg (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtSvg.framework/Versions/5/QtSvg
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0x1047cc000 - 0x1047d0ff3 +libqwbmp.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/plugins/imageformats/libqwbmp.dylib
0x1047d4000 - 0x10485fffb +libqwebp.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/plugins/imageformats/libqwebp.dylib
0x1049e9000 - 0x1049e9ffb +_mac_util.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/_mac_util.so
0x104a62000 - 0x104a63ff7 +nones_formathandler.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/nones_formathandler.cpython-36m-darwin.so
0x104ca3000 - 0x104ca3fff +_bisect.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bisect.cpython-36m-darwin.so
0x104ca6000 - 0x104caafff +math.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/math.cpython-36m-darwin.so
0x104d5b000 - 0x104ef6ff7 +multiarray.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/multiarray.cpython-36m-darwin.so
0x104fce000 - 0x1091515a7 +libopenblasp-r0.3.0.dev.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/numpy/.dylibs/libopenblasp-r0.3.0.dev.dylib
0x1094c4000 - 0x1095dbff7 +libgfortran.3.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10963f000 - 0x109675fff +libquadmath.0.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x109684000 - 0x109699ff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x1116e5000 - 0x1116f1fff +_datetime.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_datetime.cpython-36m-darwin.so
0x1116fc000 - 0x1117e9fff +umath.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/umath.cpython-36m-darwin.so
0x1118a9000 - 0x1118baff7 +_ctypes.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_ctypes.cpython-36m-darwin.so
0x1118cb000 - 0x1118cfff7 +_struct.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_struct.cpython-36m-darwin.so
0x111919000 - 0x11192bff7 +_pickle.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_pickle.cpython-36m-darwin.so
0x111b88000 - 0x111b89ffb +_bz2.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bz2.cpython-36m-darwin.so
0x111b8e000 - 0x111bd8acf dyld (551.4) /usr/lib/dyld
0x113c2c000 - 0x113c2fff7 +zlib.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/zlib.cpython-36m-darwin.so
0x113c35000 - 0x113c49ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX.app/Contents/lib/libz.1.2.11.dylib
0x113c4d000 - 0x113c4dff7 +grp.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/grp.cpython-36m-darwin.so
0x113c50000 - 0x113c52fff +_hashlib.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_hashlib.cpython-36m-darwin.so
0x113c57000 - 0x113c9bfff +libssl.1.0.0.dylib (0) /Applications/ChimeraX.app/Contents/lib/libssl.1.0.0.dylib
0x113cb6000 - 0x113dd8fd7 +libcrypto.1.0.0.dylib (0) /Applications/ChimeraX.app/Contents/lib/libcrypto.1.0.0.dylib
0x113e4b000 - 0x113e51ffb +_blake2.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_blake2.cpython-36m-darwin.so
0x113e56000 - 0x113e66ff3 +_sha3.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_sha3.cpython-36m-darwin.so
0x113e6c000 - 0x113e6dffb +_random.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_random.cpython-36m-darwin.so
0x113ef1000 - 0x113ef2ff7 +lapack_lite.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/linalg/lapack_lite.cpython-36m-darwin.so
0x113ef6000 - 0x113f11ff7 +_umath_linalg.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/linalg/_umath_linalg.cpython-36m-darwin.so
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0x113ff2000 - 0x114002ff7 +_multiarray_tests.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/_multiarray_tests.cpython-36m-darwin.so
0x114051000 - 0x11405afff +fftpack_lite.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/fft/fftpack_lite.cpython-36m-darwin.so
0x11409e000 - 0x11415cfff +mtrand.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/random/mtrand.cpython-36m-darwin.so
0x114221000 - 0x114227fff +_json.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_json.cpython-36m-darwin.so
0x1142ec000 - 0x1142f8fff +_ssl.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_ssl.cpython-36m-darwin.so
0x114308000 - 0x114311ffb +_socket.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_socket.cpython-36m-darwin.so
0x11431d000 - 0x11431fffb +select.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/select.cpython-36m-darwin.so
0x114365000 - 0x114368ff3 +binascii.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/binascii.cpython-36m-darwin.so
0x11446c000 - 0x11446cffb +_scproxy.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_scproxy.cpython-36m-darwin.so
0x114487000 - 0x1144b3fff +pyexpat.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/pyexpat.cpython-36m-darwin.so
0x114546000 - 0x114547ffb +_posixsubprocess.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_posixsubprocess.cpython-36m-darwin.so
0x11458b000 - 0x11458efff +_csv.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_csv.cpython-36m-darwin.so
0x1145d4000 - 0x1145d5ffb +_appdirs.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/_appdirs.so
0x1145d8000 - 0x1145d9fff +libappdirs.dylib (0) /Applications/ChimeraX.app/Contents/lib/libappdirs.dylib
0x11469c000 - 0x11469fff7 +errorchecker.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/errorchecker.cpython-36m-darwin.so
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0x7fff75db2000 - 0x7fff75dbbff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff75dbc000 - 0x7fff75dc3ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff75dc4000 - 0x7fff75dcffff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff75dd0000 - 0x7fff75dd3fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff75dd4000 - 0x7fff75dd5ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff75dd6000 - 0x7fff75dddff7 libsystem_symptoms.dylib (820.60.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff75dde000 - 0x7fff75df1fff libsystem_trace.dylib (829.70.1) /usr/lib/system/libsystem_trace.dylib
0x7fff75df3000 - 0x7fff75df8ff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff75df9000 - 0x7fff75e26ff7 libxpc.dylib (1205.70.9) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 6
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 250335
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=677.4M resident=0K(0%) swapped_out_or_unallocated=677.4M(100%)
Writable regions: Total=1.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 44.8M 17
CG image 516K 44
CG raster data 216K 27
CoreAnimation 6268K 137
CoreGraphics 8K 2
CoreImage 344K 48
CoreUI image data 5988K 46
CoreUI image file 232K 7
Foundation 55.8M 7
Image IO 64K 2
Kernel Alloc Once 1036K 3
MALLOC 1.2G 237
MALLOC guard page 48K 12
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 48K 4
OpenGL GLSL 512K 7
STACK GUARD 100K 26
Stack 148.2M 27
Stack Guard 56.0M 2
VM_ALLOCATE 291.2M 351
VM_ALLOCATE (reserved) 96.0M 4 reserved VM address space (unallocated)
__DATA 49.1M 477
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 215.3M 126
__TEXT 462.1M 457
__UNICODE 560K 2
mapped file 79.9M 87
shared memory 3220K 15
=========== ======= =======
TOTAL 2.7G 2155
TOTAL, minus reserved VM space 2.6G 2155
Log:
UCSF ChimeraX version: 0.8 (2018-11-21)
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-1.68.20
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 7 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Volume Data |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash while reading in a volume |
comment:2 by , 7 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
Although the user says they were opening a volume the crash happened in
pyx_getprop_8chimerax_6atomic_5cymol_9CyResidue_structure(_object*, void*)
so I think they probably don't remember exactly what they were doing. Or perhaps they just closed a structure. This seg fault looks like trying to get the structure pointer from a deallocated Residue to me.
I'm wondering of the previous dozen levels of the stack trace that are all repetitions of
44 org.python.python 0x00000001041474b2 fast_function + 386
45 org.python.python 0x0000000104146312 call_function + 434
46 org.python.python 0x000000010413f2ee _PyEval_EvalFrameDefault + 5134
47 org.python.python 0x0000000104146e20 _PyEval_EvalCodeWithName + 2592
are from Cython. We've been getting quite a few of these almost useless stack traces and it would be helpful to know what causes them. Given that the crash happened in pyx_getprop_8chimerax_6atomic_5cymol_9CyResidue_structure it seems plausible that previous stack function were in atomic code.
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...which somehow causes a Residue will a null Structure pointer to be accessed?