Opened 7 years ago
Closed 7 years ago
#1430 closed defect (duplicate)
Atom specifiers not selecting upper case chain IDs
Reported by: | Scooter Morris | Owned by: | Conrad Huang |
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Priority: | critical | Milestone: | |
Component: | Command Line | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-11-06) Description Opened 5MRC, and attempted to select /A (or /W or many others) and get "Nothing selected". Log: UCSF ChimeraX version: 0.8 (2018-11-06) How to cite UCSF ChimeraX > open 5mrc Summary of feedback from opening 5mrc fetched from pdb --- notes | Fetching compressed mmCIF 5mrc from http://files.rcsb.org/download/5mrc.cif Fetching CCD UNK from http://ligand-expo.rcsb.org/reports/U/UNK/UNK.cif Fetching CCD NA from http://ligand-expo.rcsb.org/reports/N/NA/NA.cif Fetching CCD GDP from http://ligand-expo.rcsb.org/reports/G/GDP/GDP.cif 5mrc title: Structure of the yeast mitochondrial ribosome - Class A [more info...] Chain information for 5mrc #1 --- Chain | Description 0 | bL36m 1 | mL38 11 | mS38 2 | mL40 22 | mS41 3 | mL41 33 | mS42 4 | mL43 44 | mS43 5 | mL44 55 | mS44 6 | mL46 66 | mS45 7 | mL49 77 | mS46 8 | mL50 88 | mS47 9 | mL57 A | 21S ribosomal RNA AA | bS1m B | uL2m BB | uS2m C | uL3m CC | uS3m D | uL4m DD | uS4m E | uL5m EE | uS5m F | uL6m FF | bS6m G | bL9m GG | uS7m H | uL13m HH | uS8m I | uL14m II | uS9m J | uL15m JJ | uS10m K | uL16m KK | uS11m L | bL17m LL | uS12m M | bL19m MM | uS13m N | bL21m NN | uS14m O | uL22m OO | uS15m P | uL23m PP | bS16m Q | uL24m QQ | uS17m R | bL27m RR | bS18m S | bL28m SS | uS19m T | uL29m TT | bS21m U | uL30m UU | mS23 V | bL31m VV | mS26 W | bL32m WW | mS29 X | bL33m XX | mS33 Y | bL34m YY | mS35 Z | bL35m ZZ | mS37 a | mL58 aa | 15S ribosomal RNA b | mL59 bb | tRNA c | mL60 cc | unknown protein sequence 1 d | mL67 dd | unknown protein sequence 2 > select /A Nothing selected QLineEdit::setSelection: Invalid start position (-1) > select /a 59219 atoms, 65988 bonds, 2574 pseudobonds, 3 models selected > select /W Nothing selected > select /"W" Nothing selected > select #1/W Nothing selected > sequence chain #1/W Chains must have same sequence Chains must have same sequence > select up 20 atoms, 21 bonds selected > select up 57598 atoms, 64517 bonds selected Missing or invalid "representation" argument: Expected one of 'atoms', 'ladder', 'slab', 'stubs', or 'tube/slab' > help nucleotide > ribbon sel > hide selAtoms > select protein 110036 atoms, 112213 bonds, 41 pseudobonds, 1 model selected > hide selAtoms surfaces > show selAtoms surfaces > hide selAtoms > select up 22 atoms, 24 bonds selected > select up 31883 atoms, 35699 bonds selected > show selAtoms ribbons > hide selAtoms > color grey surfaces OpenGL version: 4.1 ATI-1.68.20 OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 7 years ago
Component: | Unassigned → Command Line |
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Owner: | set to |
Platform: | → all |
Priority: | normal → critical |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Atom specifiers not selecting upper case chain IDs |
comment:2 by , 7 years ago
Resolution: | → duplicate |
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Status: | assigned → closed |
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Duplicate of #1429