![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 years ago
Closed 7 years ago
#1428 closed defect (fixed)
ISOLDE: crash in Distance_Restraint_Mgr destructor
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.0.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-11-07)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [25503]
Path: /Applications/ChimeraX06.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 0.6.0 (0.6.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [25503]
User ID: 502
Date/Time: 2018-11-08 08:42:37.293 +0000
OS Version: Mac OS X 10.14 (18A391)
Report Version: 12
Anonymous UUID: 93DF4E87-45ED-D785-6E93-DB772A884336
Sleep/Wake UUID: 3FEECE74-C75A-4D92-80A1-D6E4B48B042A
Time Awake Since Boot: 140000 seconds
Time Since Wake: 12000 seconds
System Integrity Protection: disabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5a4a2b86 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5a558c50 pthread_kill + 285
2 libsystem_c.dylib 0x00007fff5a3bf096 raise + 26
3 libsystem_platform.dylib 0x00007fff5a54db3d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 molc.cpython-36m-darwin.so 0x00000001212aa73f isolde::Distance_Restraint_Mgr::~Distance_Restraint_Mgr() + 303
6 molc.cpython-36m-darwin.so 0x00000001212aa9ce isolde::Distance_Restraint_Mgr::~Distance_Restraint_Mgr() + 14
7 _ctypes.cpython-36m-darwin.so 0x000000010fcb6f5f ffi_call_unix64 + 79
8 _ctypes.cpython-36m-darwin.so 0x000000010fcb77ba ffi_call + 858
9 _ctypes.cpython-36m-darwin.so 0x000000010fcb2943 _ctypes_callproc + 787
10 _ctypes.cpython-36m-darwin.so 0x000000010fcac739 PyCFuncPtr_call + 1049
11 org.python.python 0x000000010e9ac2a4 _PyObject_FastCallDict + 292
12 org.python.python 0x000000010ea7e30b call_function + 427
13 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
14 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
15 org.python.python 0x000000010ea7f4b2 fast_function + 386
16 org.python.python 0x000000010ea7e312 call_function + 434
17 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
18 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
19 org.python.python 0x000000010ea7f4b2 fast_function + 386
20 org.python.python 0x000000010ea7e312 call_function + 434
21 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
22 org.python.python 0x000000010ea7f52f fast_function + 511
23 org.python.python 0x000000010ea7e312 call_function + 434
24 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
25 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
26 org.python.python 0x000000010ea75e97 PyEval_EvalCodeEx + 55
27 org.python.python 0x000000010e9d427e function_call + 350
28 org.python.python 0x000000010e9ac035 PyObject_Call + 101
29 org.python.python 0x000000010ea774e3 _PyEval_EvalFrameDefault + 5635
30 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
31 org.python.python 0x000000010ea7f4b2 fast_function + 386
32 org.python.python 0x000000010ea7e312 call_function + 434
33 org.python.python 0x000000010ea772ee _PyEval_EvalFrameDefault + 5134
34 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
35 org.python.python 0x000000010ea7f4b2 fast_function + 386
36 org.python.python 0x000000010ea7e312 call_function + 434
37 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
38 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
39 org.python.python 0x000000010ea7f4b2 fast_function + 386
40 org.python.python 0x000000010ea7e312 call_function + 434
41 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
42 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
43 org.python.python 0x000000010ea75e97 PyEval_EvalCodeEx + 55
44 org.python.python 0x000000010e9d427e function_call + 350
45 org.python.python 0x000000010e9ac035 PyObject_Call + 101
46 QtCore.so 0x0000000112a45828 PyQtSlot::call(_object*, _object*) const + 40
47 QtCore.so 0x0000000112a45727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
48 QtCore.so 0x0000000112a46268 PyQtSlotProxy::unislot(void**) + 88
49 QtCore.so 0x0000000112a461da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
50 QtCore 0x00000001125ccc66 QMetaObject::activate(QObject*, int, int, void**) + 2230
51 QtWidgets 0x000000011175f89f 0x111654000 + 1095839
52 QtWidgets 0x000000011175f732 0x111654000 + 1095474
53 QtWidgets 0x00000001117609a0 QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 272
54 QtWidgets.so 0x000000011121af58 sipQPushButton::mouseReleaseEvent(QMouseEvent*) + 120
55 QtWidgets 0x000000011169f8fd QWidget::event(QEvent*) + 509
56 QtWidgets 0x0000000111760501 QAbstractButton::event(QEvent*) + 145
57 QtWidgets.so 0x000000011121b870 sipQPushButton::event(QEvent*) + 192
58 QtWidgets 0x0000000111666792 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
59 QtWidgets 0x000000011166952d QApplication::notify(QObject*, QEvent*) + 7165
60 QtWidgets.so 0x0000000111237f8a sipQApplication::notify(QObject*, QEvent*) + 234
61 QtCore 0x000000011259c32f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
62 QtWidgets 0x00000001116670c0 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool) + 896
63 QtWidgets 0x00000001116c087c 0x111654000 + 444540
64 QtWidgets 0x00000001116bf4d9 0x111654000 + 439513
65 QtWidgets 0x0000000111666792 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
66 QtWidgets 0x0000000111667aaf QApplication::notify(QObject*, QEvent*) + 383
67 QtWidgets.so 0x0000000111237f8a sipQApplication::notify(QObject*, QEvent*) + 234
68 QtCore 0x000000011259c32f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
69 QtGui 0x0000000111c2f4b2 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 2962
70 QtGui 0x0000000111c166fb QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155
71 libqcocoa.dylib 0x000000011abb7d91 0x11ab90000 + 163217
72 com.apple.CoreFoundation 0x00007fff2d2ec405 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
73 com.apple.CoreFoundation 0x00007fff2d2ec3ab __CFRunLoopDoSource0 + 108
74 com.apple.CoreFoundation 0x00007fff2d2cfe51 __CFRunLoopDoSources0 + 195
75 com.apple.CoreFoundation 0x00007fff2d2cf3fa __CFRunLoopRun + 1219
76 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
77 com.apple.HIToolbox 0x00007fff2c568895 RunCurrentEventLoopInMode + 293
78 com.apple.HIToolbox 0x00007fff2c5684d4 ReceiveNextEventCommon + 371
79 com.apple.HIToolbox 0x00007fff2c568348 _BlockUntilNextEventMatchingListInModeWithFilter + 64
80 com.apple.AppKit 0x00007fff2a82595b _DPSNextEvent + 997
81 com.apple.AppKit 0x00007fff2a8246fa -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
82 com.apple.AppKit 0x00007fff2a81e75d -[NSApplication run] + 699
83 libqcocoa.dylib 0x000000011abb6b8d 0x11ab90000 + 158605
84 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
85 QtCore 0x000000011259ca22 QCoreApplication::exec() + 402
86 QtWidgets.so 0x0000000111325dc2 meth_QApplication_exec_(_object*, _object*) + 82
87 org.python.python 0x000000010e9f4b06 _PyCFunction_FastCallDict + 166
88 org.python.python 0x000000010ea7e337 call_function + 471
89 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
90 org.python.python 0x000000010ea7f52f fast_function + 511
91 org.python.python 0x000000010ea7e312 call_function + 434
92 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
93 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
94 org.python.python 0x000000010ea7f4b2 fast_function + 386
95 org.python.python 0x000000010ea7e312 call_function + 434
96 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
97 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
98 org.python.python 0x000000010ea75e50 PyEval_EvalCode + 48
99 org.python.python 0x000000010ea7363b builtin_exec + 555
100 org.python.python 0x000000010e9f4b06 _PyCFunction_FastCallDict + 166
101 org.python.python 0x000000010ea7e337 call_function + 471
102 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
103 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
104 org.python.python 0x000000010ea7f4b2 fast_function + 386
105 org.python.python 0x000000010ea7e312 call_function + 434
106 org.python.python 0x000000010ea7725c _PyEval_EvalFrameDefault + 4988
107 org.python.python 0x000000010ea7ee20 _PyEval_EvalCodeWithName + 2592
108 org.python.python 0x000000010ea75e97 PyEval_EvalCodeEx + 55
109 org.python.python 0x000000010e9d427e function_call + 350
110 org.python.python 0x000000010e9ac035 PyObject_Call + 101
111 org.python.python 0x000000010eac4b53 RunModule + 147
112 org.python.python 0x000000010eac43ec Py_Main + 2588
113 edu.ucsf.cgl.ChimeraX 0x000000010e997e16 main + 278
114 libdyld.dylib 0x00007fff5a364085 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff2a82e581 _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a4a4b8e poll + 10
1 QtCore 0x00000001125ef3e0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001125f0a59 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000112f92a0a 0x112f71000 + 137738
5 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
6 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
7 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
8 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
9 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5a4a3052 kevent + 10
1 QtWebEngineCore 0x000000011409e3b9 0x112f71000 + 18011065
2 QtWebEngineCore 0x000000011409b6ad 0x112f71000 + 17999533
3 QtWebEngineCore 0x0000000113b8f97f 0x112f71000 + 12708223
4 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
5 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
6 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
7 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
8 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 4:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x000000011325e1c8 0x112f71000 + 3068360
10 QtWebEngineCore 0x000000011325e58f 0x112f71000 + 3069327
11 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
12 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
13 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
14 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
15 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 5:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff5a4a3052 kevent + 10
1 QtWebEngineCore 0x000000011409e3b9 0x112f71000 + 18011065
2 QtWebEngineCore 0x000000011409b6ad 0x112f71000 + 17999533
3 QtWebEngineCore 0x0000000113b8f97f 0x112f71000 + 12708223
4 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
5 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
6 QtWebEngineCore 0x000000011325e248 0x112f71000 + 3068488
7 QtWebEngineCore 0x000000011325e59f 0x112f71000 + 3069343
8 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
9 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
10 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
12 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 6:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x000000011325e2c8 0x112f71000 + 3068616
10 QtWebEngineCore 0x000000011325e5af 0x112f71000 + 3069359
11 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
12 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
13 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
14 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
15 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 7:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x000000011325e348 0x112f71000 + 3068744
10 QtWebEngineCore 0x000000011325e5bc 0x112f71000 + 3069372
11 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
12 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
13 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
14 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
15 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 8:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x000000011325e3c8 0x112f71000 + 3068872
10 QtWebEngineCore 0x000000011325e5c9 0x112f71000 + 3069385
11 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
12 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
13 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
14 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
15 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5a4a3052 kevent + 10
1 QtWebEngineCore 0x000000011409e3b9 0x112f71000 + 18011065
2 QtWebEngineCore 0x000000011409b6ad 0x112f71000 + 17999533
3 QtWebEngineCore 0x0000000113b8f97f 0x112f71000 + 12708223
4 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
5 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
6 QtWebEngineCore 0x000000011325e448 0x112f71000 + 3069000
7 QtWebEngineCore 0x000000011325e5d6 0x112f71000 + 3069398
8 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
9 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
10 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
12 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 10:: BrowserBlockingWorker1/57091
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x0000000113bdfbff 0x112f71000 + 13036543
3 QtWebEngineCore 0x0000000113bdf2c6 0x112f71000 + 13034182
4 QtWebEngineCore 0x0000000113be316d 0x112f71000 + 13050221
5 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
6 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 11:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
10 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
11 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
12 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
13 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 12:: CompositorTileWorker1/69635
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x000000011477ec68 0x112f71000 + 25222248
3 QtWebEngineCore 0x0000000113be316d 0x112f71000 + 13050221
4 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
5 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
6 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
7 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
10 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
11 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
12 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
13 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
10 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
11 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
12 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
13 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5a4a3052 kevent + 10
1 QtWebEngineCore 0x000000011409e3b9 0x112f71000 + 18011065
2 QtWebEngineCore 0x000000011409b6ad 0x112f71000 + 17999533
3 QtWebEngineCore 0x0000000113b8f97f 0x112f71000 + 12708223
4 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
5 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
6 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
7 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
8 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a4a4b8e poll + 10
1 QtCore 0x00000001125ef3e0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001125f0a59 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000112f92a0a 0x112f71000 + 137738
5 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
6 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
7 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
8 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
9 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a4a4b8e poll + 10
1 QtCore 0x00000001125ef3e0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001125f0a59 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000112f92a0a 0x112f71000 + 137738
5 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
6 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
7 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
8 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
9 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a4a4b8e poll + 10
1 QtCore 0x00000001125ef3e0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001125f0a59 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000112f92a0a 0x112f71000 + 137738
5 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
6 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
7 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
8 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
9 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 19:: PowerSaveBlocker
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d2d005e __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff2d2cf5ad __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff2d2cece4 CFRunLoopRunSpecific + 463
5 QtWebEngineCore 0x0000000113b908ef 0x112f71000 + 12712175
6 QtWebEngineCore 0x0000000113b90284 0x112f71000 + 12710532
7 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
8 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
9 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
10 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
11 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
12 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
13 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a4a4b8e poll + 10
1 QtCore 0x00000001125ef3e0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x00000001125f0a59 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000112598082 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000112f92a0a 0x112f71000 + 137738
5 QtWebEngineCore 0x0000000113b8d0ee 0x112f71000 + 12697838
6 QtWebEngineCore 0x0000000113bb1511 0x112f71000 + 12846353
7 QtWebEngineCore 0x0000000113be534b 0x112f71000 + 13058891
8 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
9 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 21:: BrowserBlockingWorker2/288531
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x0000000113bdfbff 0x112f71000 + 13036543
3 QtWebEngineCore 0x0000000113bdf2c6 0x112f71000 + 13034182
4 QtWebEngineCore 0x0000000113be316d 0x112f71000 + 13050221
5 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
6 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 22:: BrowserBlockingWorker3/267415
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x0000000113bdfbff 0x112f71000 + 13036543
3 QtWebEngineCore 0x0000000113bdf2c6 0x112f71000 + 13034182
4 QtWebEngineCore 0x0000000113be316d 0x112f71000 + 13050221
5 QtWebEngineCore 0x0000000113bde647 0x112f71000 + 13030983
6 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 24:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 25:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 26:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 27:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 28:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 29:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 30:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMM.dylib 0x0000000129e46f91 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 31:
0 libsystem_kernel.dylib 0x00007fff5a4a01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a5595cb _pthread_cond_wait + 724
2 libOpenMMOpenCL.dylib 0x000000012a0b2ccd threadBody(void*) + 109
3 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 32:
0 libsystem_pthread.dylib 0x00007fff5a555408 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 33:: Dispatch queue: opencl_runtime
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.framework.IOKit 0x00007fff2fd0dedb io_connect_method + 374
3 com.apple.framework.IOKit 0x00007fff2fd0dd3d IOConnectCallMethod + 244
4 com.apple.framework.IOKit 0x00007fff2fd0e54a IOConnectCallStructMethod + 38
5 com.apple.IOAccelerator 0x00007fff4b0f5c4c IOAccelContextSubmitDataBuffersExt2 + 248
6 com.apple.IOAccelerator 0x00007fff4b0f5b4e IOAccelContextSubmitDataBuffers + 29
7 libGPUSupportMercury.dylib 0x00007fff48d3fb24 gpusQueueSubmitDataBuffers + 117
8 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff2454e68b IntelCLCommandBuffer::getNew(GLDQueueRec*) + 31
9 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff2454e581 intelSubmitCLCommands(GLDQueueRec*, unsigned int) + 69
10 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff2454e4cc CHAL_INTEL::ChalContext::ChalFlush() + 82
11 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff24551311 CHAL_INTEL::ChalContext::ChalExecuteKernel(GLDKernelRec*, unsigned int, unsigned long*, unsigned long*, unsigned long*, unsigned long, void**, unsigned long*, unsigned int*, GLDFenceRec*) + 1257
12 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff24550def gldExecuteKernel + 493
13 com.apple.opencl 0x00007fff35e52d14 0x7fff35e3f000 + 81172
14 com.apple.opencl 0x00007fff35e6ade5 0x7fff35e3f000 + 179685
15 com.apple.opencl 0x00007fff35e6cd66 0x7fff35e3f000 + 187750
16 libdispatch.dylib 0x00007fff5a315dcb _dispatch_client_callout + 8
17 libdispatch.dylib 0x00007fff5a31c120 _dispatch_lane_serial_drain + 618
18 libdispatch.dylib 0x00007fff5a31cbd8 _dispatch_lane_invoke + 388
19 libdispatch.dylib 0x00007fff5a325084 _dispatch_workloop_worker_thread + 603
20 libsystem_pthread.dylib 0x00007fff5a55561c _pthread_wqthread + 409
21 libsystem_pthread.dylib 0x00007fff5a555415 start_wqthread + 13
Thread 34:
0 libsystem_pthread.dylib 0x00007fff5a555408 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 35:
0 libsystem_pthread.dylib 0x00007fff5a555408 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 36:
0 libsystem_pthread.dylib 0x00007fff5a555408 start_wqthread + 0
Thread 37:
0 libsystem_pthread.dylib 0x00007fff5a555408 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 38:
0 libsystem_kernel.dylib 0x00007fff5a49cc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a49d174 mach_msg + 60
2 com.apple.framework.IOKit 0x00007fff2fd0dedb io_connect_method + 374
3 com.apple.framework.IOKit 0x00007fff2fd0e83b IOConnectCallScalarMethod + 76
4 com.apple.IOAccelerator 0x00007fff4b0f62fa IOAccelContextFinishFenceEvent + 41
5 libGPUSupportMercury.dylib 0x00007fff48d4107a gldFinishFenceOnQueue + 127
6 com.apple.opencl 0x00007fff35e52ec4 0x7fff35e3f000 + 81604
7 com.apple.opencl 0x00007fff35e69244 0x7fff35e3f000 + 172612
8 com.apple.opencl 0x00007fff35e690e8 clWaitForEvents + 185
9 libOpenMMOpenCL.dylib 0x000000012a195ee8 OpenMM::OpenCLNonbondedUtilities::computeInteractions(int, bool, bool) + 568
10 libOpenMMOpenCL.dylib 0x000000012a0ea0e8 OpenMM::OpenCLCalcForcesAndEnergyKernel::finishComputation(OpenMM::ContextImpl&, bool, bool, int, bool&) + 88
11 libOpenMM.dylib 0x0000000129de62bb OpenMM::ContextImpl::calcForcesAndEnergy(bool, bool, int) + 267
12 libOpenMM.dylib 0x0000000129e47bee OpenMM::VariableLangevinIntegrator::step(int) + 94
13 openmm.cpython-36m-darwin.so 0x000000012063e2f7 isolde::OpenMM_Thread_Handler::_step_threaded(unsigned long) + 375
14 openmm.cpython-36m-darwin.so 0x00000001206416f2 void* std::__1::__thread_proxy >, void (isolde::OpenMM_Thread_Handler::*)(unsigned long), isolde::OpenMM_Thread_Handler*, unsigned long> >(void*) + 66
15 libsystem_pthread.dylib 0x00007fff5a55633d _pthread_body + 126
16 libsystem_pthread.dylib 0x00007fff5a5592a7 _pthread_start + 70
17 libsystem_pthread.dylib 0x00007fff5a555425 thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001123865c0 rcx: 0x000000010eda2a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010eda2a80 rsp: 0x000000010eda2a48
r8: 0x000000010eda2f48 r9: 0x179159fc26372bb3 r10: 0x000000011238666c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000600006f88060 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5a4a2b86 rfl: 0x0000000000000286 cr2: 0x000000010ebe5060
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x10e997000 - 0x10e997ff3 +edu.ucsf.cgl.ChimeraX (0.6.0 - 0.6.0.0) /Applications/ChimeraX06.app/Contents/MacOS/ChimeraX
0x10e99d000 - 0x10eb61ff7 +org.python.python (3.6.4, [c] 2001-2017 Python Software Foundation. - 3.6.4) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/Python
0x10ef69000 - 0x10ef6aff7 +_heapq.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_heapq.cpython-36m-darwin.so
0x10f0b7000 - 0x10f0bbff7 +_struct.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_struct.cpython-36m-darwin.so
0x10f185000 - 0x10f191fff +_ssl.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_ssl.cpython-36m-darwin.so
0x10f1a1000 - 0x10f1aaffb +_socket.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_socket.cpython-36m-darwin.so
0x10f1f6000 - 0x10f1fafff +math.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/math.cpython-36m-darwin.so
0x10f201000 - 0x10f203ffb +select.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/select.cpython-36m-darwin.so
0x10f249000 - 0x10f24cff3 +binascii.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/binascii.cpython-36m-darwin.so
0x10f250000 - 0x10f264ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX06.app/Contents/lib/libz.1.2.11.dylib
0x10f268000 - 0x10f26bff7 +zlib.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/zlib.cpython-36m-darwin.so
0x10f2b1000 - 0x10f2b2ffb +_bz2.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bz2.cpython-36m-darwin.so
0x10f2b6000 - 0x10f2b6ff7 +grp.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/grp.cpython-36m-darwin.so
0x10f2f9000 - 0x10f2f9fff +_bisect.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bisect.cpython-36m-darwin.so
0x10f2fc000 - 0x10f2fefff +_hashlib.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_hashlib.cpython-36m-darwin.so
0x10f302000 - 0x10f308ffb +_blake2.cpython-36m-darwin.so (0) /Applications/ChimeraX06.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_blake2.cpython-36m-darwin.so
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0x7fff4ba65000 - 0x7fff4ba6affb com.apple.LoginUICore (4.0 - 4.0) /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore
0x7fff4c1c9000 - 0x7fff4c1ccfff com.apple.Mangrove (1.0 - 25) /System/Library/PrivateFrameworks/Mangrove.framework/Versions/A/Mangrove
0x7fff4c25a000 - 0x7fff4c281ffb com.apple.MarkupUI (1.0 - 232.3.27) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff4c2ea000 - 0x7fff4c31dff3 com.apple.MediaKit (16 - 906) /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff4c6c6000 - 0x7fff4c6eeffb com.apple.spotlight.metadata.utilities (1.0 - 1191.51) /System/Library/PrivateFrameworks/MetadataUtilities.framework/Versions/A/MetadataUtilities
0x7fff4c6ef000 - 0x7fff4c781fff com.apple.gpusw.MetalTools (1.0 - 1) /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools
0x7fff4c796000 - 0x7fff4c7affff com.apple.MobileAssets (1.0 - 437.200.49) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset
0x7fff4c92b000 - 0x7fff4c946fff com.apple.MobileKeyBag (2.0 - 1.0) /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag
0x7fff4c957000 - 0x7fff4c9d3ff7 com.apple.Montreal (1.0 - 42.15.8) /System/Library/PrivateFrameworks/Montreal.framework/Versions/A/Montreal
0x7fff4c9d4000 - 0x7fff4c9feff7 com.apple.MultitouchSupport.framework (2400.15 - 2400.15) /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff4cc70000 - 0x7fff4cc7afff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
0x7fff4d545000 - 0x7fff4d59bfff com.apple.OTSVG (1.0 - ???) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG
0x7fff4e5f7000 - 0x7fff4e6fdfff com.apple.PencilKit (1.0 - 1) /System/Library/PrivateFrameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff4e6fe000 - 0x7fff4e70dff3 com.apple.PerformanceAnalysis (1.217 - 217) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
0x7fff4e968000 - 0x7fff4e968fff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff50225000 - 0x7fff5024aff7 com.apple.pluginkit.framework (1.0 - 1) /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit
0x7fff50275000 - 0x7fff50287ff3 com.apple.PowerLog (1.0 - 1) /System/Library/PrivateFrameworks/PowerLog.framework/Versions/A/PowerLog
0x7fff5066e000 - 0x7fff506c5fff com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
0x7fff506c6000 - 0x7fff506e4ff7 com.apple.ProtocolBuffer (1 - 263) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff50878000 - 0x7fff5087bff3 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff5087c000 - 0x7fff50892ff3 com.apple.QuickLookThumbnailing (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff50893000 - 0x7fff508ebf0f com.apple.ROCKit (24 - 24) /System/Library/PrivateFrameworks/ROCKit.framework/Versions/A/ROCKit
0x7fff509ac000 - 0x7fff509b8ff3 com.apple.xpc.RemoteServiceDiscovery (1.0 - 1336.201.2) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff509cb000 - 0x7fff509eeffb com.apple.RemoteViewServices (2.0 - 128) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff509ef000 - 0x7fff50a03fff com.apple.xpc.RemoteXPC (1.0 - 1336.201.2) /System/Library/PrivateFrameworks/RemoteXPC.framework/Versions/A/RemoteXPC
0x7fff5234f000 - 0x7fff52357ffb com.apple.coreservices.SharePointManager (1.0 - 57.1) /System/Library/PrivateFrameworks/SharePointManagement.framework/Versions/A/SharePointManagement
0x7fff5235c000 - 0x7fff5247bfff com.apple.Sharing (1176.11 - 1176.11) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff5247c000 - 0x7fff5249bff3 com.apple.shortcut (2.16 - 101) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff5249c000 - 0x7fff524aeff7 com.apple.sidecar-core (1.0 - 38) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff524af000 - 0x7fff524bfffb com.apple.sidecar-ui (1.0 - 38) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff5322d000 - 0x7fff534ddff7 com.apple.SkyLight (1.600.0 - 336.80.6) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff53cac000 - 0x7fff53cb9fff com.apple.SpeechRecognitionCore (5.0.21 - 5.0.21) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff53d76000 - 0x7fff53fdeffb com.apple.spotlight.index (10.7.0 - 1191.51) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff5439e000 - 0x7fff543ddff3 com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff543de000 - 0x7fff5444fffb com.apple.Suggestions (6.0 - 226) /System/Library/PrivateFrameworks/Suggestions.framework/Versions/A/Suggestions
0x7fff54b1a000 - 0x7fff54ba7ff7 com.apple.Symbolication (10.0 - 64254.5) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff54ba8000 - 0x7fff54bb1ffb com.apple.SymptomDiagnosticReporter (1.0 - 820.207.88) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter
0x7fff54e03000 - 0x7fff54e2ffff com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration
0x7fff550b0000 - 0x7fff550bdff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff5532c000 - 0x7fff553f3ff7 com.apple.TextureIO (3.8.4 - 3.8.1) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff55451000 - 0x7fff5546cfff com.apple.ToneKit (1.0 - 1) /System/Library/PrivateFrameworks/ToneKit.framework/Versions/A/ToneKit
0x7fff5546d000 - 0x7fff55495ffb com.apple.ToneLibrary (1.0 - 1) /System/Library/PrivateFrameworks/ToneLibrary.framework/Versions/A/ToneLibrary
0x7fff554ad000 - 0x7fff554aefff com.apple.TrustEvaluationAgent (2.0 - 31.200.1) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff554b4000 - 0x7fff5566efff com.apple.UIFoundation (1.0 - 550.35) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff5635c000 - 0x7fff56445fff com.apple.ViewBridge (400.1 - 400.1) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff56c60000 - 0x7fff56c63fff com.apple.dt.XCTTargetBootstrap (1.0 - 1) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff57094000 - 0x7fff57096ff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff57097000 - 0x7fff570acfff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff570e3000 - 0x7fff57115ffb com.apple.contacts.vCard (1.0 - ???) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
0x7fff57350000 - 0x7fff57388fff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib
0x7fff5738b000 - 0x7fff57396ff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib
0x7fff57397000 - 0x7fff57423ff7 libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib
0x7fff57427000 - 0x7fff57428ff7 libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff5745f000 - 0x7fff57622ff7 libFosl_dynamic.dylib (18.3.2) /usr/lib/libFosl_dynamic.dylib
0x7fff57643000 - 0x7fff5764afff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib
0x7fff57678000 - 0x7fff57697ffb libMobileGestalt.dylib (645.200.76) /usr/lib/libMobileGestalt.dylib
0x7fff57698000 - 0x7fff57698fff libOpenScriptingUtil.dylib (178) /usr/lib/libOpenScriptingUtil.dylib
0x7fff577d9000 - 0x7fff577daffb libSystem.B.dylib (1252.200.5) /usr/lib/libSystem.B.dylib
0x7fff57864000 - 0x7fff57865fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib
0x7fff57878000 - 0x7fff5788effb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib
0x7fff5788f000 - 0x7fff578b8ffb libarchive.2.dylib (54.200.3) /usr/lib/libarchive.2.dylib
0x7fff578b9000 - 0x7fff57938fef libate.dylib (1.13.8) /usr/lib/libate.dylib
0x7fff5793c000 - 0x7fff5793cff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff57a14000 - 0x7fff57a24ff3 libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib
0x7fff57a25000 - 0x7fff57a33fff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib
0x7fff57a34000 - 0x7fff57a8bff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib
0x7fff57a8c000 - 0x7fff57aa1fff libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib
0x7fff57aa2000 - 0x7fff57aa2ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib
0x7fff57aa3000 - 0x7fff57ab3ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib
0x7fff57ab4000 - 0x7fff57accffb libcompression.dylib (52.200.13) /usr/lib/libcompression.dylib
0x7fff57d77000 - 0x7fff57d8dfff libcoretls.dylib (155.200.6) /usr/lib/libcoretls.dylib
0x7fff57d8e000 - 0x7fff57d8fff3 libcoretls_cfhelpers.dylib (155.200.6) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff57e45000 - 0x7fff57f2dff7 libcrypto.0.9.8.dylib (76.200.2) /usr/lib/libcrypto.0.9.8.dylib
0x7fff57f2e000 - 0x7fff580beff3 libcrypto.35.dylib (22.200.4) /usr/lib/libcrypto.35.dylib
0x7fff58259000 - 0x7fff583f1ff7 libcrypto.42.dylib (22.200.4) /usr/lib/libcrypto.42.dylib
0x7fff583f2000 - 0x7fff583fdff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib
0x7fff58406000 - 0x7fff5845cffb libcups.2.dylib (462.9) /usr/lib/libcups.2.dylib
0x7fff58486000 - 0x7fff584daff3 libcurl.4.dylib (105.200.2) /usr/lib/libcurl.4.dylib
0x7fff58594000 - 0x7fff58594fff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib
0x7fff58595000 - 0x7fff585aeffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib
0x7fff585c6000 - 0x7fff585cbff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff585cc000 - 0x7fff585d1ff7 libheimdal-asn1.dylib (520.200.17) /usr/lib/libheimdal-asn1.dylib
0x7fff585fd000 - 0x7fff586eeff7 libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff586ef000 - 0x7fff58952ffb libicucore.A.dylib (62107.0.1) /usr/lib/libicucore.A.dylib
0x7fff5899f000 - 0x7fff589a0fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff589a1000 - 0x7fff589b9fff liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff589d1000 - 0x7fff58a81fff libmecab.1.0.0.dylib (779.15.23) /usr/lib/libmecab.1.0.0.dylib
0x7fff58a82000 - 0x7fff58cbffff libmecabra.dylib (779.15.23) /usr/lib/libmecabra.dylib
0x7fff58e97000 - 0x7fff591effff libnetwork.dylib (1229.200.109) /usr/lib/libnetwork.dylib
0x7fff59280000 - 0x7fff59a06fe7 libobjc.A.dylib (750) /usr/lib/libobjc.A.dylib
0x7fff59a07000 - 0x7fff59a08fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff59a19000 - 0x7fff59a1dffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff59a20000 - 0x7fff59a56ff7 libpcap.A.dylib (79.200.4) /usr/lib/libpcap.A.dylib
0x7fff59b70000 - 0x7fff59b88ffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib
0x7fff59b8a000 - 0x7fff59bc6ff7 libsandbox.1.dylib (851.201.1) /usr/lib/libsandbox.1.dylib
0x7fff59bc7000 - 0x7fff59bd9ff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff59bda000 - 0x7fff59bdbffb libspindump.dylib (266) /usr/lib/libspindump.dylib
0x7fff59bdc000 - 0x7fff59db3fe7 libsqlite3.dylib (274.20) /usr/lib/libsqlite3.dylib
0x7fff59dd6000 - 0x7fff59e0fff7 libssl.0.9.8.dylib (76.200.2) /usr/lib/libssl.0.9.8.dylib
0x7fff59eb6000 - 0x7fff59f03fff libssl.44.dylib (22.200.4) /usr/lib/libssl.44.dylib
0x7fff59f04000 - 0x7fff59f55ff7 libstdc++.6.dylib (104.1) /usr/lib/libstdc++.6.dylib
0x7fff5a040000 - 0x7fff5a043ffb libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff5a044000 - 0x7fff5a051fff libxar.1.dylib (404) /usr/lib/libxar.1.dylib
0x7fff5a056000 - 0x7fff5a139fff libxml2.2.dylib (32.6) /usr/lib/libxml2.2.dylib
0x7fff5a13a000 - 0x7fff5a162ff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib
0x7fff5a163000 - 0x7fff5a175ffb libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff5a1e6000 - 0x7fff5a1eaff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff5a1eb000 - 0x7fff5a1f5ff3 libcommonCrypto.dylib (60118.200.6) /usr/lib/system/libcommonCrypto.dylib
0x7fff5a1f6000 - 0x7fff5a1fdfff libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff5a1fe000 - 0x7fff5a207ff3 libcopyfile.dylib (146.200.3) /usr/lib/system/libcopyfile.dylib
0x7fff5a208000 - 0x7fff5a28cfff libcorecrypto.dylib (602.200.50) /usr/lib/system/libcorecrypto.dylib
0x7fff5a312000 - 0x7fff5a34cff7 libdispatch.dylib (1008.200.78) /usr/lib/system/libdispatch.dylib
0x7fff5a34d000 - 0x7fff5a37cfff libdyld.dylib (625.13) /usr/lib/system/libdyld.dylib
0x7fff5a37d000 - 0x7fff5a37dffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff5a37e000 - 0x7fff5a38aff7 libkxld.dylib (4903.201.2) /usr/lib/system/libkxld.dylib
0x7fff5a38b000 - 0x7fff5a38bff7 liblaunch.dylib (1336.201.2) /usr/lib/system/liblaunch.dylib
0x7fff5a38c000 - 0x7fff5a391fff libmacho.dylib (917) /usr/lib/system/libmacho.dylib
0x7fff5a392000 - 0x7fff5a394ff3 libquarantine.dylib (86.200.11) /usr/lib/system/libquarantine.dylib
0x7fff5a395000 - 0x7fff5a396ff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5a397000 - 0x7fff5a3aeff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5a3af000 - 0x7fff5a3affff libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5a3b0000 - 0x7fff5a438fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff5a439000 - 0x7fff5a43cff7 libsystem_configuration.dylib (963.200.27) /usr/lib/system/libsystem_configuration.dylib
0x7fff5a43d000 - 0x7fff5a440ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5a441000 - 0x7fff5a447ffb libsystem_darwin.dylib (1272.200.26) /usr/lib/system/libsystem_darwin.dylib
0x7fff5a448000 - 0x7fff5a44eff7 libsystem_dnssd.dylib (878.200.35) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5a44f000 - 0x7fff5a49bff3 libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5a49c000 - 0x7fff5a4c3ff7 libsystem_kernel.dylib (4903.201.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff5a4c4000 - 0x7fff5a50fff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5a510000 - 0x7fff5a534ff7 libsystem_malloc.dylib (166.200.60) /usr/lib/system/libsystem_malloc.dylib
0x7fff5a535000 - 0x7fff5a540ffb libsystem_networkextension.dylib (767.200.40) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5a541000 - 0x7fff5a548fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5a549000 - 0x7fff5a552fef libsystem_platform.dylib (177.200.16) /usr/lib/system/libsystem_platform.dylib
0x7fff5a553000 - 0x7fff5a55dfff libsystem_pthread.dylib (330.201.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff5a55e000 - 0x7fff5a561ff7 libsystem_sandbox.dylib (851.201.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5a562000 - 0x7fff5a564ff7 libsystem_secinit.dylib (30.200.13) /usr/lib/system/libsystem_secinit.dylib
0x7fff5a565000 - 0x7fff5a56cff7 libsystem_symptoms.dylib (820.207.88) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5a56d000 - 0x7fff5a582ff7 libsystem_trace.dylib (906.200.86) /usr/lib/system/libsystem_trace.dylib
0x7fff5a584000 - 0x7fff5a589ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5a58a000 - 0x7fff5a5bafff libxpc.dylib (1336.201.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 444
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 13901623
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=738.4M resident=0K(0%) swapped_out_or_unallocated=738.4M(100%)
Writable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 4
Activity Tracing 256K 2
CG backing stores 51.5M 20
CG image 272K 35
CoreAnimation 484K 72
CoreGraphics 8K 2
CoreImage 208K 25
CoreUI image data 4552K 52
CoreUI image file 360K 7
Foundation 28K 4
Kernel Alloc Once 8K 2
MALLOC 763.5M 536
MALLOC guard page 32K 9
MALLOC_LARGE (reserved) 1024K 6 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 32K 2
OpenCL 10.7M 28
OpenCL (reserved) 32K 2 reserved VM address space (unallocated)
OpenGL GLSL 512K 7
STACK GUARD 152K 39
Stack 184.8M 40
Stack Guard 56.0M 2
VM_ALLOCATE 111.4M 391
__DATA 63.3M 650
__FONT_DATA 4K 2
__GLSLBUILTINS 5176K 2
__LINKEDIT 248.7M 252
__TEXT 489.6M 607
__UNICODE 560K 2
mapped file 82.4M 97
shared memory 10.5M 23
=========== ======= =======
TOTAL 2.4G 2894
TOTAL, minus reserved VM space 2.0G 2894
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 0.8 (2018-11-07)
How to cite UCSF ChimeraX
> open /Users/jozef/Downloads/hPCP17_xC15-cluster1_1.pdb
Summary of feedback from opening
/Users/jozef/Downloads/hPCP17_xC15-cluster1_1.pdb
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warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_26w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_26.pdb
Ignored bad PDB record found on line 5
REMARK final NOE weights: unambig 50 amb: 50
30 messages similar to the above omitted
Chain information for hPCP17_xC15-cluster1_1.pdb #1
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Chain | Description
A | No description available
B | No description available
> set bgColor white
OpenGL version: 4.1 NVIDIA-12.0.19 355.11.10.50.10.103
OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ISOLDE: crash in Distance_Restraint_Mgr destructor |
comment:2 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Oops. A silly oversight on my part: destructor was calling the class's generic delete_restraints() function, which takes a "to_delete" set and both frees the memory for each restraint and removes it from the internal master set. Problem is that it was calling delete_restraints() with the master set as the argument, so elements were being deleted from the same set that was being iterated over - which leads to Very Bad Things happening.
I've fixed this, and the next release with the fix applied should be out fairly soon after the ChimeraX 0.8 stable release. You can avoid the issue for now by making sure the destructor is never called while any distance restraints remain. The easiest way to accomplish this (after saving your coordinates, of course), is to do something like:
select #1
delete selAtoms
... prior to actually closing the model proper, since deleting any atom involved in a distance restraint will automatically delete the restraint.