![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
#1419 closed defect (fixed)
Crash in chem_group::find_5ring_OR2
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Analysis | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.7 (2018-08-01)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [19649]
Path: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.7.0 (0.7.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [19649]
User ID: 501
Date/Time: 2018-11-04 18:33:02.801 -0700
OS Version: Mac OS X 10.13.6 (17G65)
Report Version: 12
Bridge OS Version: 2.3.2 (15P6059)
Anonymous UUID: FCA8BD39-49C8-6EA8-721A-E6CCB3A7B37D
Sleep/Wake UUID: AF565A3C-4613-4EB6-9FE2-134BFE003599
Time Awake Since Boot: 850000 seconds
Time Since Wake: 380000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
*** error for object 0x610002c1d560: pointer being freed was not allocated
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff744e4b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff746af080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff743f26fe raise + 26
3 libsystem_platform.dylib 0x00007fff746a2f5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff744401ae abort + 127
6 libsystem_malloc.dylib 0x00007fff7453e822 free + 521
7 _chem_group.cpython-36m-darwin.so 0x00000001115a27c2 find_5ring_OR2(_object*, _object*) + 1218
8 org.python.python 0x00000001032c39cd PyCFunction_Call + 205
9 org.python.python 0x00000001033465d0 _PyEval_EvalFrameDefault + 5872
10 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
11 org.python.python 0x000000010334e4b2 fast_function + 386
12 org.python.python 0x000000010334d312 call_function + 434
13 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
14 org.python.python 0x000000010334e52f fast_function + 511
15 org.python.python 0x000000010334d312 call_function + 434
16 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
17 org.python.python 0x000000010334e52f fast_function + 511
18 org.python.python 0x000000010334d312 call_function + 434
19 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
20 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
21 org.python.python 0x000000010334e4b2 fast_function + 386
22 org.python.python 0x000000010334d312 call_function + 434
23 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
24 org.python.python 0x000000010334e52f fast_function + 511
25 org.python.python 0x000000010334d312 call_function + 434
26 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
27 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
28 org.python.python 0x0000000103344e97 PyEval_EvalCodeEx + 55
29 org.python.python 0x00000001032a327e function_call + 350
30 org.python.python 0x000000010327b035 PyObject_Call + 101
31 org.python.python 0x00000001033464e3 _PyEval_EvalFrameDefault + 5635
32 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
33 org.python.python 0x0000000103344e97 PyEval_EvalCodeEx + 55
34 org.python.python 0x00000001032a327e function_call + 350
35 org.python.python 0x000000010327b035 PyObject_Call + 101
36 org.python.python 0x00000001033464e3 _PyEval_EvalFrameDefault + 5635
37 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
38 org.python.python 0x000000010334e4b2 fast_function + 386
39 org.python.python 0x000000010334d312 call_function + 434
40 org.python.python 0x00000001033462ee _PyEval_EvalFrameDefault + 5134
41 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
42 org.python.python 0x000000010334e4b2 fast_function + 386
43 org.python.python 0x000000010334d312 call_function + 434
44 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
45 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
46 org.python.python 0x000000010334e4b2 fast_function + 386
47 org.python.python 0x000000010334d312 call_function + 434
48 org.python.python 0x00000001033462ee _PyEval_EvalFrameDefault + 5134
49 org.python.python 0x000000010334e52f fast_function + 511
50 org.python.python 0x000000010334d312 call_function + 434
51 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
52 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
53 org.python.python 0x0000000103344e97 PyEval_EvalCodeEx + 55
54 org.python.python 0x00000001032a327e function_call + 350
55 org.python.python 0x000000010327b035 PyObject_Call + 101
56 QtCore.so 0x0000000106ff5828 PyQtSlot::call(_object*, _object*) const + 40
57 QtCore.so 0x0000000106ff5727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
58 QtCore.so 0x0000000106ff6268 PyQtSlotProxy::unislot(void**) + 88
59 QtCore.so 0x0000000106ff61da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
60 QtCore 0x0000000106b5d316 QMetaObject::activate(QObject*, int, int, void**) + 2230
61 QtWidgets 0x0000000105ea0605 QAction::activate(QAction::ActionEvent) + 309
62 QtWidgets 0x0000000105fa3759 0x105e98000 + 1095513
63 QtWidgets 0x0000000105fa4a1f QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
64 QtWidgets 0x0000000106086b8f QToolButton::mouseReleaseEvent(QMouseEvent*) + 15
65 QtWidgets 0x0000000105ee3f60 QWidget::event(QEvent*) + 496
66 QtWidgets 0x0000000105fa4581 QAbstractButton::event(QEvent*) + 145
67 QtWidgets 0x0000000106087141 QToolButton::event(QEvent*) + 321
68 QtWidgets 0x0000000105ea9e42 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
69 QtWidgets 0x0000000105eacbdd QApplication::notify(QObject*, QEvent*) + 7165
70 QtWidgets.so 0x0000000105a7bf8a sipQApplication::notify(QObject*, QEvent*) + 234
71 QtCore 0x0000000106b2c9bf QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
72 QtWidgets 0x0000000105eaa770 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool) + 896
73 QtWidgets 0x0000000105f042ac 0x105e98000 + 443052
74 QtWidgets 0x0000000105f02f09 0x105e98000 + 438025
75 QtWidgets 0x0000000105ea9e42 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
76 QtWidgets 0x0000000105eab15f QApplication::notify(QObject*, QEvent*) + 383
77 QtWidgets.so 0x0000000105a7bf8a sipQApplication::notify(QObject*, QEvent*) + 234
78 QtCore 0x0000000106b2c9bf QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
79 QtGui 0x00000001064754e2 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 2962
80 QtGui 0x000000010645b61b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155
81 libqcocoa.dylib 0x00000001088c4741 0x10889c000 + 165697
82 com.apple.CoreFoundation 0x00007fff4c56fa11 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
83 com.apple.CoreFoundation 0x00007fff4c62942c __CFRunLoopDoSource0 + 108
84 com.apple.CoreFoundation 0x00007fff4c552470 __CFRunLoopDoSources0 + 208
85 com.apple.CoreFoundation 0x00007fff4c5518ed __CFRunLoopRun + 1293
86 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
87 com.apple.HIToolbox 0x00007fff4b83bd96 RunCurrentEventLoopInMode + 286
88 com.apple.HIToolbox 0x00007fff4b83ba0f ReceiveNextEventCommon + 366
89 com.apple.HIToolbox 0x00007fff4b83b884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
90 com.apple.AppKit 0x00007fff49aeca73 _DPSNextEvent + 2085
91 com.apple.AppKit 0x00007fff4a282e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
92 com.apple.AppKit 0x00007fff49ae1885 -[NSApplication run] + 764
93 libqcocoa.dylib 0x00000001088c353d 0x10889c000 + 161085
94 QtCore 0x0000000106b28682 QEventLoop::exec(QFlags) + 418
95 QtCore 0x0000000106b2d0b2 QCoreApplication::exec() + 402
96 QtWidgets.so 0x0000000105b69dc2 meth_QApplication_exec_(_object*, _object*) + 82
97 org.python.python 0x00000001032c3b06 _PyCFunction_FastCallDict + 166
98 org.python.python 0x000000010334d337 call_function + 471
99 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
100 org.python.python 0x000000010334e52f fast_function + 511
101 org.python.python 0x000000010334d312 call_function + 434
102 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
103 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
104 org.python.python 0x000000010334e4b2 fast_function + 386
105 org.python.python 0x000000010334d312 call_function + 434
106 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
107 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
108 org.python.python 0x0000000103344e50 PyEval_EvalCode + 48
109 org.python.python 0x000000010334263b builtin_exec + 555
110 org.python.python 0x00000001032c3b06 _PyCFunction_FastCallDict + 166
111 org.python.python 0x000000010334d337 call_function + 471
112 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
113 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
114 org.python.python 0x000000010334e4b2 fast_function + 386
115 org.python.python 0x000000010334d312 call_function + 434
116 org.python.python 0x000000010334625c _PyEval_EvalFrameDefault + 4988
117 org.python.python 0x000000010334de20 _PyEval_EvalCodeWithName + 2592
118 org.python.python 0x0000000103344e97 PyEval_EvalCodeEx + 55
119 org.python.python 0x00000001032a327e function_call + 350
120 org.python.python 0x000000010327b035 PyObject_Call + 101
121 org.python.python 0x0000000103393b53 RunModule + 147
122 org.python.python 0x00000001033933ec Py_Main + 2588
123 edu.ucsf.cgl.ChimeraX 0x0000000103264e16 main + 278
124 libdyld.dylib 0x00007fff74394015 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff744e528a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff746ac009 _pthread_wqthread + 1035
2 libsystem_pthread.dylib 0x00007fff746abbe9 start_wqthread + 13
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff49c29fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff744e609a poll + 10
1 QtCore 0x0000000106b7fa80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x0000000106b810f9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000106b28682 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000108bb971a 0x108b98000 + 136986
5 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
6 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
7 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
8 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
9 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff744e5bea kevent + 10
1 QtWebEngineCore 0x0000000109cc56d9 0x108b98000 + 18011865
2 QtWebEngineCore 0x0000000109cc29cd 0x108b98000 + 18000333
3 QtWebEngineCore 0x00000001097b6c4f 0x108b98000 + 12708943
4 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
5 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
6 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
7 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
8 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 5:: WorkerPool/81155
0 libsystem_kernel.dylib 0x00007fff744e4a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff746ad5c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x00000001097f056b 0x108b98000 + 12944747
3 QtWebEngineCore 0x000000010980e999 0x108b98000 + 13068697
4 QtWebEngineCore 0x000000010980ef07 0x108b98000 + 13070087
5 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
6 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 6:: WorkerPool/80899
0 libsystem_kernel.dylib 0x00007fff744e4a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff746ad5c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x00000001097f056b 0x108b98000 + 12944747
3 QtWebEngineCore 0x000000010980e999 0x108b98000 + 13068697
4 QtWebEngineCore 0x000000010980ef07 0x108b98000 + 13070087
5 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
6 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 7:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x0000000108e85418 0x108b98000 + 3068952
10 QtWebEngineCore 0x0000000108e857df 0x108b98000 + 3069919
11 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
12 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
13 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 8:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff744e5bea kevent + 10
1 QtWebEngineCore 0x0000000109cc56d9 0x108b98000 + 18011865
2 QtWebEngineCore 0x0000000109cc29cd 0x108b98000 + 18000333
3 QtWebEngineCore 0x00000001097b6c4f 0x108b98000 + 12708943
4 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
5 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
6 QtWebEngineCore 0x0000000108e85498 0x108b98000 + 3069080
7 QtWebEngineCore 0x0000000108e857ef 0x108b98000 + 3069935
8 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
9 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
10 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 9:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x0000000108e85518 0x108b98000 + 3069208
10 QtWebEngineCore 0x0000000108e857ff 0x108b98000 + 3069951
11 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
12 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
13 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 10:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x0000000108e85598 0x108b98000 + 3069336
10 QtWebEngineCore 0x0000000108e8580c 0x108b98000 + 3069964
11 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
12 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
13 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 11:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x0000000108e85618 0x108b98000 + 3069464
10 QtWebEngineCore 0x0000000108e85819 0x108b98000 + 3069977
11 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
12 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
13 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff744e5bea kevent + 10
1 QtWebEngineCore 0x0000000109cc56d9 0x108b98000 + 18011865
2 QtWebEngineCore 0x0000000109cc29cd 0x108b98000 + 18000333
3 QtWebEngineCore 0x00000001097b6c36 0x108b98000 + 12708918
4 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
5 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
6 QtWebEngineCore 0x0000000108e85698 0x108b98000 + 3069592
7 QtWebEngineCore 0x0000000108e85826 0x108b98000 + 3069990
8 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
9 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
10 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 13:: BrowserBlockingWorker1/57859
0 libsystem_kernel.dylib 0x00007fff744e4a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff746ad589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x0000000109806ecf 0x108b98000 + 13037263
3 QtWebEngineCore 0x0000000109806596 0x108b98000 + 13034902
4 QtWebEngineCore 0x000000010980a43d 0x108b98000 + 13050941
5 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
6 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 14:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
10 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
11 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 15:: CompositorTileWorker1/74243
0 libsystem_kernel.dylib 0x00007fff744e4a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff746ad589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010a3a5f78 0x108b98000 + 25223032
3 QtWebEngineCore 0x000000010980a43d 0x108b98000 + 13050941
4 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
5 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 16:: AudioThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
10 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
11 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 17:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff744db20a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff744da724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4c552785 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff4c551ad7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff4c551153 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x00000001097b7bbf 0x108b98000 + 12712895
6 QtWebEngineCore 0x00000001097b7554 0x108b98000 + 12711252
7 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
8 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
9 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
10 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
11 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff744e5bea kevent + 10
1 QtWebEngineCore 0x0000000109cc56d9 0x108b98000 + 18011865
2 QtWebEngineCore 0x0000000109cc29cd 0x108b98000 + 18000333
3 QtWebEngineCore 0x00000001097b6c4f 0x108b98000 + 12708943
4 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
5 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
6 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
7 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
8 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff744e609a poll + 10
1 QtCore 0x0000000106b7fa80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x0000000106b810f9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000106b28682 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000108bb971a 0x108b98000 + 136986
5 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
6 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
7 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
8 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
9 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff744e609a poll + 10
1 QtCore 0x0000000106b7fa80 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x0000000106b810f9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x0000000106b28682 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x0000000108bb971a 0x108b98000 + 136986
5 QtWebEngineCore 0x00000001097b43be 0x108b98000 + 12698558
6 QtWebEngineCore 0x00000001097d87e1 0x108b98000 + 12847073
7 QtWebEngineCore 0x000000010980c61b 0x108b98000 + 13059611
8 QtWebEngineCore 0x0000000109805917 0x108b98000 + 13031703
9 libsystem_pthread.dylib 0x00007fff746ac661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff746ac50d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff746abbf9 thread_start + 13
Thread 21:
0 libsystem_pthread.dylib 0x00007fff746abbdc start_wqthread + 0
1 ??? 0x0000000100000038 0 + 4294967352
Thread 22:
0 libsystem_pthread.dylib 0x00007fff746abbdc start_wqthread + 0
1 ??? 0x00007ffface81060 _Block_destructInstance + 8
Thread 23:
0 libsystem_pthread.dylib 0x00007fff746abbdc start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffacea7380 rcx: 0x000000010369fa48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x000000010369fa80 rsp: 0x000000010369fa48
r8: 0x000000010369ff48 r9: 0x0000000000000000 r10: 0x00007fffacea73c8 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000000000000006 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff744e4b66 rfl: 0x0000000000000206 cr2: 0x000000010369ef00
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x1041a2000 - 0x1041a3ffb +_bz2.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bz2.cpython-36m-darwin.so
0x1041a7000 - 0x1041a7ff7 +grp.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/grp.cpython-36m-darwin.so
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0x104295000 - 0x104296ffb +_random.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_random.cpython-36m-darwin.so
0x10429a000 - 0x1042a6fff +_datetime.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_datetime.cpython-36m-darwin.so
0x104331000 - 0x104331ffb +_scproxy.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_scproxy.cpython-36m-darwin.so
0x104356000 - 0x10438aff7 +_decimal.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_decimal.cpython-36m-darwin.so
0x1043e9000 - 0x104415fff +pyexpat.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/pyexpat.cpython-36m-darwin.so
0x104539000 - 0x10453affb +_posixsubprocess.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_posixsubprocess.cpython-36m-darwin.so
0x1045be000 - 0x1045d0ff7 +_pickle.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_pickle.cpython-36m-darwin.so
0x1045dc000 - 0x1045dffff +_csv.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_csv.cpython-36m-darwin.so
0x1045e5000 - 0x1045ebfff +_json.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_json.cpython-36m-darwin.so
0x104630000 - 0x104631ffb +_appdirs.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/_appdirs.so
0x104634000 - 0x104635fff +libappdirs.dylib (0) /Applications/ChimeraX.app/Contents/lib/libappdirs.dylib
0x10476b000 - 0x104905ff7 +multiarray.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/multiarray.cpython-36m-darwin.so
0x104a16000 - 0x104afefff +umath.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/umath.cpython-36m-darwin.so
0x104b7c000 - 0x104b8dff7 +_ctypes.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_ctypes.cpython-36m-darwin.so
0x104d5f000 - 0x104d60ff7 +lapack_lite.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/linalg/lapack_lite.cpython-36m-darwin.so
0x104d64000 - 0x104d7cfff +_umath_linalg.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/linalg/_umath_linalg.cpython-36m-darwin.so
0x104e0a000 - 0x104e13ff7 +fftpack_lite.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/fft/fftpack_lite.cpython-36m-darwin.so
0x104e57000 - 0x104f11ff7 +mtrand.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/random/mtrand.cpython-36m-darwin.so
0x10510a000 - 0x10510dff7 +errorchecker.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/errorchecker.cpython-36m-darwin.so
0x105113000 - 0x105124ff3 +arraydatatype.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/arraydatatype.cpython-36m-darwin.so
0x105138000 - 0x105147ffb +wrapper.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/wrapper.cpython-36m-darwin.so
0x10519b000 - 0x10519fff3 +formathandler.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/formathandler.cpython-36m-darwin.so
0x1051a8000 - 0x1051aaffb +latebind.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/latebind.cpython-36m-darwin.so
0x1056b0000 - 0x1056bdff7 +vbo.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/vbo.cpython-36m-darwin.so
0x10570e000 - 0x105723fff +_geometry.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/geometry/_geometry.so
0x10572b000 - 0x1057eaff3 +libarrays.dylib (0) /Applications/ChimeraX.app/Contents/lib/libarrays.dylib
0x1058b7000 - 0x1058b7ffb +_opcode.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_opcode.cpython-36m-darwin.so
0x10593a000 - 0x105bbcffb +QtWidgets.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyQt5/QtWidgets.so
0x105e98000 - 0x1062e8ff7 +QtWidgets (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtWidgets.framework/Versions/5/QtWidgets
0x106445000 - 0x10684cfe7 +QtGui (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtGui.framework/Versions/5/QtGui
0x106941000 - 0x106e0cfff +QtCore (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtCore.framework/Versions/5/QtCore
0x106ebc000 - 0x106ecfff3 +sip.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/sip.so
0x106eda000 - 0x10701bfff +QtCore.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyQt5/QtCore.so
0x1071fc000 - 0x107352fff +QtGui.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyQt5/QtGui.so
0x10765f000 - 0x107693ff7 +libmolc.dylib (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/libmolc.dylib
0x1076b2000 - 0x1077afffb +libatomstruct.dylib (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/lib/libatomstruct.dylib
0x1077ef000 - 0x1077f5ff7 +libelement.dylib (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/lib/libelement.dylib
0x1077fd000 - 0x1077feffb +libpyinstance.dylib (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/lib/libpyinstance.dylib
0x107801000 - 0x107805ffb +liblogger.dylib (0) /Applications/ChimeraX.app/Contents/lib/liblogger.dylib
0x10780b000 - 0x10783ffff +cymol.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/cymol.so
0x107867000 - 0x10787afff +tinyarray.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/tinyarray.cpython-36m-darwin.so
0x1079d3000 - 0x107a47ff7 +_map.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/map/_map.cpython-36m-darwin.so
0x107aad000 - 0x107ac9ff7 +QtWebEngineWidgets.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyQt5/QtWebEngineWidgets.so
0x107aee000 - 0x107b0dfff +QtWebEngineWidgets (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtWebEngineWidgets.framework/Versions/5/QtWebEngineWidgets
0x107b2f000 - 0x107dd3ffb +QtQuick (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtQuick.framework/Versions/5/QtQuick
0x107eca000 - 0x108197ff3 +QtQml (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtQml.framework/Versions/5/QtQml
0x108240000 - 0x108342fff +QtNetwork (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtNetwork.framework/Versions/5/QtNetwork
0x108387000 - 0x10839bffb +QtWebChannel (0) /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/lib/QtWebChannel.framework/Versions/5/QtWebChannel
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0x7fff6b7f8000 - 0x7fff6b816fff com.apple.ProtocolBuffer (1 - 260) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff6b983000 - 0x7fff6b999ff7 com.apple.QuickLookThumbnailing (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff6b9e0000 - 0x7fff6b9ecfff com.apple.xpc.RemoteServiceDiscovery (1.0 - 1205.70.9) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff6b9ed000 - 0x7fff6ba10ffb com.apple.RemoteViewServices (2.0 - 125) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff6ba11000 - 0x7fff6ba26ff3 com.apple.xpc.RemoteXPC (1.0 - 1205.70.9) /System/Library/PrivateFrameworks/RemoteXPC.framework/Versions/A/RemoteXPC
0x7fff6d327000 - 0x7fff6d32fff7 com.apple.coreservices.SharePointManager (1.0 - 57.1) /System/Library/PrivateFrameworks/SharePointManagement.framework/Versions/A/SharePointManagement
0x7fff6d334000 - 0x7fff6d449ff7 com.apple.Sharing (1050.22.2 - 1050.22.2) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff6d44a000 - 0x7fff6d469ff7 com.apple.shortcut (2.16 - 99) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff6d474000 - 0x7fff6d475ff7 com.apple.performance.SignpostNotification (1.2.6 - 2.6) /System/Library/PrivateFrameworks/SignpostNotification.framework/Versions/A/SignpostNotification
0x7fff6e1bd000 - 0x7fff6e459ff7 com.apple.SkyLight (1.600.0 - 312.103) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff6ec22000 - 0x7fff6ec2ffff com.apple.SpeechRecognitionCore (4.6.1 - 4.6.1) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff6ece1000 - 0x7fff6ef1fff3 com.apple.spotlight.index (10.7.0 - 1191.4.13) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff6f0dc000 - 0x7fff6f103fff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff6f104000 - 0x7fff6f175ffb com.apple.Suggestions (6.0 - 213) /System/Library/PrivateFrameworks/Suggestions.framework/Versions/A/Suggestions
0x7fff6f7d5000 - 0x7fff6f85efc7 com.apple.Symbolication (9.3 - 64033) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff6f86f000 - 0x7fff6f877ffb com.apple.SymptomDiagnosticReporter (1.0 - 820.60.2) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter
0x7fff6fb24000 - 0x7fff6fb50fff com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration
0x7fff6fdcf000 - 0x7fff6fdd7ff7 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff6ffe4000 - 0x7fff700a1ff7 com.apple.TextureIO (3.7 - 3.7) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff700f8000 - 0x7fff70113ffb com.apple.ToneKit (1.0 - 1) /System/Library/PrivateFrameworks/ToneKit.framework/Versions/A/ToneKit
0x7fff70114000 - 0x7fff7013bfff com.apple.ToneLibrary (1.0 - 1) /System/Library/PrivateFrameworks/ToneLibrary.framework/Versions/A/ToneLibrary
0x7fff7014b000 - 0x7fff7014cfff com.apple.TrustEvaluationAgent (2.0 - 31) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff70152000 - 0x7fff70301fff com.apple.UIFoundation (1.0 - 547.5) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff70fd6000 - 0x7fff710a5ff7 com.apple.ViewBridge (343.2 - 343.2) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff71a0a000 - 0x7fff71a0cffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff71a0d000 - 0x7fff71a22fff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff71a4d000 - 0x7fff71a7afff com.apple.contacts.vCard (1.0 - 2330.3) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
0x7fff71b73000 - 0x7fff71ba6ff7 libclosured.dylib (551.4) /usr/lib/closure/libclosured.dylib
0x7fff71c60000 - 0x7fff71c99ff7 libCRFSuite.dylib (41) /usr/lib/libCRFSuite.dylib
0x7fff71c9a000 - 0x7fff71ca5fff libChineseTokenizer.dylib (28) /usr/lib/libChineseTokenizer.dylib
0x7fff71ca6000 - 0x7fff71d33ff7 libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib
0x7fff71d37000 - 0x7fff71d38ff3 libDiagnosticMessagesClient.dylib (104) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff71d6f000 - 0x7fff71f39ff3 libFosl_dynamic.dylib (17.8) /usr/lib/libFosl_dynamic.dylib
0x7fff71f59000 - 0x7fff71f60fff libMatch.1.dylib (31) /usr/lib/libMatch.1.dylib
0x7fff71f71000 - 0x7fff71f71fff libOpenScriptingUtil.dylib (174) /usr/lib/libOpenScriptingUtil.dylib
0x7fff720a8000 - 0x7fff720acffb libScreenReader.dylib (562.18.4) /usr/lib/libScreenReader.dylib
0x7fff720ad000 - 0x7fff720aeffb libSystem.B.dylib (1252.50.4) /usr/lib/libSystem.B.dylib
0x7fff7212d000 - 0x7fff7212efff libThaiTokenizer.dylib (2.2) /usr/lib/libThaiTokenizer.dylib
0x7fff72141000 - 0x7fff72141fff libapple_crypto.dylib (109.50.14) /usr/lib/libapple_crypto.dylib
0x7fff72142000 - 0x7fff72158ff7 libapple_nghttp2.dylib (1.24) /usr/lib/libapple_nghttp2.dylib
0x7fff72159000 - 0x7fff72183ff3 libarchive.2.dylib (54) /usr/lib/libarchive.2.dylib
0x7fff72184000 - 0x7fff72205fdf libate.dylib (1.13.1) /usr/lib/libate.dylib
0x7fff72209000 - 0x7fff72209ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff7220a000 - 0x7fff722c2ff3 libboringssl.dylib (109.50.14) /usr/lib/libboringssl.dylib
0x7fff722c3000 - 0x7fff722d3ff3 libbsm.0.dylib (39) /usr/lib/libbsm.0.dylib
0x7fff722d4000 - 0x7fff722e1ffb libbz2.1.0.dylib (38) /usr/lib/libbz2.1.0.dylib
0x7fff722e2000 - 0x7fff72338fff libc++.1.dylib (400.9) /usr/lib/libc++.1.dylib
0x7fff72339000 - 0x7fff7235dff7 libc++abi.dylib (400.8.2) /usr/lib/libc++abi.dylib
0x7fff7235f000 - 0x7fff7236ffff libcmph.dylib (6) /usr/lib/libcmph.dylib
0x7fff72370000 - 0x7fff72387fcf libcompression.dylib (47.60.2) /usr/lib/libcompression.dylib
0x7fff72632000 - 0x7fff7264aff7 libcoretls.dylib (155.50.1) /usr/lib/libcoretls.dylib
0x7fff7264b000 - 0x7fff7264cff3 libcoretls_cfhelpers.dylib (155.50.1) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff727e5000 - 0x7fff72976fff libcrypto.35.dylib (22.50.2) /usr/lib/libcrypto.35.dylib
0x7fff72b11000 - 0x7fff72b1cff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib
0x7fff72b1d000 - 0x7fff72b73ff3 libcups.2.dylib (462.2.4) /usr/lib/libcups.2.dylib
0x7fff72b9e000 - 0x7fff72bf2ffb libcurl.4.dylib (105.40.1) /usr/lib/libcurl.4.dylib
0x7fff72cb3000 - 0x7fff72cb3fff libenergytrace.dylib (16) /usr/lib/libenergytrace.dylib
0x7fff72cb4000 - 0x7fff72ccdffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib
0x7fff72ce5000 - 0x7fff72ce9ff7 libgermantok.dylib (17) /usr/lib/libgermantok.dylib
0x7fff72cea000 - 0x7fff72cefff3 libheimdal-asn1.dylib (520.50.6) /usr/lib/libheimdal-asn1.dylib
0x7fff72d1b000 - 0x7fff72e0cff7 libiconv.2.dylib (51.50.1) /usr/lib/libiconv.2.dylib
0x7fff72e0d000 - 0x7fff73034ffb libicucore.A.dylib (59180.0.1) /usr/lib/libicucore.A.dylib
0x7fff73081000 - 0x7fff73082fff liblangid.dylib (128) /usr/lib/liblangid.dylib
0x7fff73083000 - 0x7fff7309cffb liblzma.5.dylib (10) /usr/lib/liblzma.5.dylib
0x7fff7309d000 - 0x7fff730b3ff7 libmarisa.dylib (9) /usr/lib/libmarisa.dylib
0x7fff730b4000 - 0x7fff73163fff libmecab.1.0.0.dylib (779.7.6) /usr/lib/libmecab.1.0.0.dylib
0x7fff73164000 - 0x7fff7338cff7 libmecabra.dylib (779.7.6) /usr/lib/libmecabra.dylib
0x7fff73564000 - 0x7fff736dffff libnetwork.dylib (1229.70.2) /usr/lib/libnetwork.dylib
0x7fff73766000 - 0x7fff73b547e7 libobjc.A.dylib (723) /usr/lib/libobjc.A.dylib
0x7fff73b55000 - 0x7fff73b56fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff73b67000 - 0x7fff73b6bfff libpam.2.dylib (22) /usr/lib/libpam.2.dylib
0x7fff73b6e000 - 0x7fff73ba2fff libpcap.A.dylib (79.20.1) /usr/lib/libpcap.A.dylib
0x7fff73c21000 - 0x7fff73c3dffb libresolv.9.dylib (65) /usr/lib/libresolv.9.dylib
0x7fff73c3f000 - 0x7fff73c78ff3 libsandbox.1.dylib (765.70.1) /usr/lib/libsandbox.1.dylib
0x7fff73c79000 - 0x7fff73c8bfff libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff73c8c000 - 0x7fff73c8dff3 libspindump.dylib (252) /usr/lib/libspindump.dylib
0x7fff73c8e000 - 0x7fff73e21ff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib
0x7fff73e7d000 - 0x7fff73ed0ffb libssl.35.dylib (22.50.2) /usr/lib/libssl.35.dylib
0x7fff73ff5000 - 0x7fff74055ff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib
0x7fff74056000 - 0x7fff74059ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib
0x7fff7405a000 - 0x7fff74067fff libxar.1.dylib (400) /usr/lib/libxar.1.dylib
0x7fff7406b000 - 0x7fff74152fff libxml2.2.dylib (31.11) /usr/lib/libxml2.2.dylib
0x7fff74153000 - 0x7fff7417bfff libxslt.1.dylib (15.12) /usr/lib/libxslt.1.dylib
0x7fff7417c000 - 0x7fff7418effb libz.1.dylib (70) /usr/lib/libz.1.dylib
0x7fff7422a000 - 0x7fff7422eff7 libcache.dylib (80) /usr/lib/system/libcache.dylib
0x7fff7422f000 - 0x7fff74239ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff7423a000 - 0x7fff74241fff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib
0x7fff74242000 - 0x7fff7424bffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib
0x7fff7424c000 - 0x7fff742d1fff libcorecrypto.dylib (562.70.1) /usr/lib/system/libcorecrypto.dylib
0x7fff74359000 - 0x7fff74392ff7 libdispatch.dylib (913.60.2) /usr/lib/system/libdispatch.dylib
0x7fff74393000 - 0x7fff743b0ff7 libdyld.dylib (551.4) /usr/lib/system/libdyld.dylib
0x7fff743b1000 - 0x7fff743b1ffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib
0x7fff743b2000 - 0x7fff743beff3 libkxld.dylib (4570.71.2) /usr/lib/system/libkxld.dylib
0x7fff743bf000 - 0x7fff743bfff7 liblaunch.dylib (1205.70.9) /usr/lib/system/liblaunch.dylib
0x7fff743c0000 - 0x7fff743c4ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib
0x7fff743c5000 - 0x7fff743c7ff3 libquarantine.dylib (86) /usr/lib/system/libquarantine.dylib
0x7fff743c8000 - 0x7fff743c9ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib
0x7fff743ca000 - 0x7fff743e1fff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff743e2000 - 0x7fff743e2fff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff743e3000 - 0x7fff7446cff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff7446d000 - 0x7fff74470ffb libsystem_configuration.dylib (963.50.8) /usr/lib/system/libsystem_configuration.dylib
0x7fff74471000 - 0x7fff74474ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff74475000 - 0x7fff74476fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff74477000 - 0x7fff7447dff7 libsystem_dnssd.dylib (878.70.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff7447e000 - 0x7fff744c7ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff744c8000 - 0x7fff744eeff7 libsystem_kernel.dylib (4570.71.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff744ef000 - 0x7fff7453afcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff7453b000 - 0x7fff7455afff libsystem_malloc.dylib (140.50.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff7455b000 - 0x7fff7468bff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff7468c000 - 0x7fff74696ffb libsystem_networkextension.dylib (767.70.1) /usr/lib/system/libsystem_networkextension.dylib
0x7fff74697000 - 0x7fff746a0ff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff746a1000 - 0x7fff746a8ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff746a9000 - 0x7fff746b4fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff746b5000 - 0x7fff746b8fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff746b9000 - 0x7fff746baff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff746bb000 - 0x7fff746c2ff7 libsystem_symptoms.dylib (820.60.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff746c3000 - 0x7fff746d6fff libsystem_trace.dylib (829.70.1) /usr/lib/system/libsystem_trace.dylib
0x7fff746d8000 - 0x7fff746ddff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff746de000 - 0x7fff7470bff7 libxpc.dylib (1205.70.9) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 484335
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=561.9M resident=0K(0%) swapped_out_or_unallocated=561.9M(100%)
Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 4
Activity Tracing 256K 2
CG backing stores 29.0M 8
CG image 244K 19
CoreAnimation 204K 24
CoreGraphics 8K 2
CoreImage 244K 32
CoreUI image data 5388K 37
CoreUI image file 216K 5
Foundation 4K 2
Image IO 64K 2
Kernel Alloc Once 8K 2
MALLOC 2.1G 114
MALLOC guard page 48K 12
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 36K 3
OpenGL GLSL 512K 7
STACK GUARD 92K 24
Stack 154.7M 27
Stack Guard 56.0M 2
VM_ALLOCATE 78.6M 161
__DATA 46.0M 455
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 208.1M 108
__TEXT 353.8M 438
__UNICODE 560K 2
mapped file 80.2M 70
shared memory 3692K 14
=========== ======= =======
TOTAL 3.1G 1554
TOTAL, minus reserved VM space 3.1G 1554
Log:
UCSF ChimeraX version: 0.7 (2018-08-01)
OpenGL version: 4.1 ATI-1.68.20
OpenGL renderer: AMD Radeon Pro Vega 64 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-1.68.20
OpenGL renderer: AMD Radeon Pro Vega 64 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Attachments (1)
Change History (7)
comment:1 by , 7 years ago
| Component: | Unassigned → Structure Analysis |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in chem_group::find_5ring_OR2 |
comment:2 by , 7 years ago
| Status: | accepted → feedback |
|---|
follow-up: 3 comment:3 by , 7 years ago
Hi Eric, I believe it crashed when I clicked the ‘find hydrogen bonds’ icon, though I’m not sure. It was one of the display icons in the upper left for sure. Here’s the file. I originally exported this pdb out of Chimera after deleting the #2 and small z chains. Then opened it in ChimeraX. It doesn’t seem to reproduce regular crashes. Thanks for making this software! Arik
comment:4 by , 7 years ago
Hi Arik,
Thank you very much for providing the info and the structure. I can intermittently reproduce it, which isn't the greatest thing for debugging purposes but it does also happen in "nogui" mode so I can easily just repeatedly try it using a script until the crash occurs, so I should be able to make progress. It's a significant step forward from the total inability to reproduce it that I had before!
--Eric
comment:5 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | feedback → closed |
Your feedback was very helpful in allowing me to track down this problem. It's fixed now (next daily build). Thanks!
--Eric
Note:
See TracTickets
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Hi Arik,
--Eric