ChimeraX bug report submission

[goddard@…]

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-11-02)
Description
Testing bug reporter when it is no longer a registered tool.

Log:
UCSF ChimeraX version: 0.8 (2018-11-02)  
How to cite UCSF ChimeraX  

size

size

usage size

usage size

size [objects] [atomRadius atomRadius] [stickRadius a number]
[pseudobondRadius a number] [ballScale a number]  
    — change atom and bond sizes  
  objects: an objects specifier or nothing  
  atomRadius: default or a number  

open 1a0m format mmCIF fromDatabase pdb

open 1a0m format mmCIF fromDatabase pdb

1a0m title:  
1.1 angstrom crystal structure of A-conotoxin [TYR15]-epi [more info...]  
  
Chain information for 1a0m #1  
---  
Chain | Description  
A B | α-conotoxin [TYR15]-epi  
  
  

size #1 atomRadius -5

size #1 atomRadius -5

Traceback (most recent call last):  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 219, in execute  
    cmd.run(cmd_text)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2581, in run  
    result = ci.function(session, **kw_args)  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/std_commands/size.py", line 47, in size  
    atoms.radii = atom_radius  
  File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/atomic/molc.py", line 220, in set_prop  
    cset(self._c_pointers, n, v)  
ValueError: radius must be positive  
  
ValueError: radius must be positive  
  
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/atomic/molc.py", line 220, in set_prop  
cset(self._c_pointers, n, v)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation

[Tom Goddard]

Test worked.