Opened 7 years ago

Closed 7 years ago

Last modified 7 years ago

#1384 closed defect (not a bug)

'hide sidechain' should not hide CA atoms

Reported by: Tristan Croll Owned by: Eric Pettersen
Priority: minor Milestone:
Component: Command Line Version:
Keywords: Cc: Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Not much more to say, really - at the moment this command leaves the backbone trace broken up into fragments. To get the expected result one needs to type hide sidechain&~@CA.

Change History (4)

comment:1 by Tom Goddard, 7 years ago

Component: GraphicsCommand Line
Owner: changed from Tom Goddard to Eric Pettersen

I believe Eric added the "sidechain" selector.

comment:2 by Eric Pettersen, 7 years ago

Cc: Elaine Meng added
Status: assignedaccepted

comment:3 by Eric Pettersen, 7 years ago

Resolution: not a bug
Status: acceptedclosed

After much discussion it was decided to keep CA in the sidechain selector so that "show sidechain" would include the CA-CB bond to the ribbon backbone. The selector "sideonly" does what you want: hide sideonly

--Eric

in reply to:  4 ; comment:4 by Elaine Meng, 7 years ago

Technically this isn’t a bug, although I can see why it’s confusing.  There is “sidechain” including CA and “sideonly” without it.  The problem is that we felt we needed to add CA to “sidechain” because otherwise “show sidechain” shows CB onward floating in space.  Reciprocally, one way or the other is going to be problematic if “sidechain” always means the same thing, and since the ribbon display is often the default, we thought showing sidechain would be more often used.

Short answer is that we’re hoping “hide sideonly” will suffice for this purpose.
Elaine

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