Opened 7 years ago

Closed 7 years ago

#1382 closed defect (duplicate)

CageBuilder session restore failure

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Higher-Order Structure Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.14393
ChimeraX Version: 0.8 (2018-08-30)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.8 (2018-08-30)  
How to cite UCSF ChimeraX  

toolshed show "Density Map Toolbar"

open C:/Users/tdiasda/Desktop/emd_0089.map

Opened emd_0089.map, grid size 350,350,350, pixel 1.06, shown at level 0.0253,
step 2, values float32  

surface dust true

Missing or invalid "surfaces" argument: invalid surfaces specifier  

surface dust true size1

Missing or invalid "surfaces" argument: invalid surfaces specifier  

surface dust

Missing or invalid "surfaces" argument: empty atom specifier  

surface dust #true size1 atom1

Missing or invalid "surfaces" argument: invalid surfaces specifier  

surface dust #true

Missing or invalid "surfaces" argument: invalid surfaces specifier  

surface dust

Missing or invalid "surfaces" argument: empty atom specifier  

vop gaussian #1 sdev 3.18

Unknown command: vop gaussian #1 sdev 3.18  

Unknown command: vop gaussian #1 sdev 3.18  

vop gaussian #1 sdev 3.18

Unknown command: vop gaussian #1 sdev 3.18  

Unknown command: vop gaussian #1 sdev 3.18  

vop gaussian #1 sdev 3.18

Unknown command: vop gaussian #1 sdev 3.18  

Unknown command: vop gaussian #1 sdev 3.18  

volume selMaps hide

volume selMaps hide

volume selMaps show

volume selMaps style surface

volume selMaps style surface

lighting flat

lighting flat

set silhouettes false

lighting flat

set silhouettes false

lighting flat

lighting full

lighting soft

lighting soft

lighting shadows true intensity 0.5

lighting soft

lighting simple

lighting simple

lighting simple

set bgColor white

set bgColor gray

set bgColor black

view clip false

view clip false

view clip false

volume selMaps show

volume selMaps show

volume selMaps hide

show #!1 models

volume selMaps hide

volume selMaps hide

volume selMaps show

volume selMaps style surface

volume selMaps style mesh

volume selMaps style mesh

volume selMaps style surface

volume selMaps show

lighting soft

color selAtoms bychain

color selAtoms bychain

hide #!1.1 models

show #!1.1 models

select #1.1

1 model selected  

~select #1.1

select subtract #1.1

Nothing selected  

select #1.1

1 model selected  

toolshed show "Command Line Interface"

toolshed show "Volume Viewer"

toolshed show "Cage Builder"

surface dust #1 size 5

volume #1 level 0.1 step 1

close session

Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 753, in <lambda>  
    save_action.triggered.connect(lambda arg, s=self, sess=session:
s.file_close_cb(sess))  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 536, in file_close_cb  
    run(session, 'close session')  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
    results = command.run(text, log=log)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\std_commands\close.py", line 60, in close_session  
    session.reset()  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 408, in reset  
    container.clear()  
AttributeError: 'CageBuilder' object has no attribute 'clear'  
  

AttributeError: 'CageBuilder' object has no attribute 'clear'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 408, in reset  
container.clear()  
  
See log for complete Python traceback.  
  

open C:\Users\tdiasda\Desktop\emd_0089.map

Opened emd_0089.map, grid size 350,350,350, pixel 1.06, shown at level 0.0253,
step 2, values float32  

surface dust #1 size 5

surface dust #1 size 6

surface dust #1 size 7

surface dust #1 size 8

surface dust #1 size 10

lighting simple

lighting shadows true

lighting soft

lighting full

lighting flat

lighting full

lighting soft

open C:/Users/tdiasda/Desktop/6gyb.pdb

6gyb.pdb title:  
Cryo-em structure of the bacteria-killing type IV secretion system core
complex from xanthomonas citri [more&nbspinfo...;]  
  
Chain information for 6gyb.pdb #2  
---  
Chain | Description  
A D G J M P S a d g j m p s | VIRB7  
B E H K N Q T b e h k n q t | VIRB9 protein  
C F I L O R U c f i l o r u | VIRB10 protein  
  

Could not parse stylesheet of object 0x195be678950  

Could not parse stylesheet of object 0x195be678950  

Could not parse stylesheet of object 0x195be678950  

Could not parse stylesheet of object 0x195be678950  

hide #!2 models

Could not parse stylesheet of object 0x195be678950  

show #!2 models

Could not parse stylesheet of object 0x195be678950  

hide #!1 models

Could not parse stylesheet of object 0x195be678950  

color selAtoms bychain

style selAtoms ball

Changed 59318 atom styles  

show selAtoms ribbons

show selAtoms ribbons

style selAtoms stick

Changed 59318 atom styles  

style selAtoms ball

Changed 59318 atom styles  

style selAtoms stick

Changed 59318 atom styles  

hide selAtoms ribbons

show selAtoms ribbons

show #!1 models

Could not parse stylesheet of object 0x195be678950  

hide #!1 models

Could not parse stylesheet of object 0x195be678950  

show #!1 models

Could not parse stylesheet of object 0x195be678950  

hide #!1 models

Could not parse stylesheet of object 0x195be678950  

hide selAtoms ribbons

hide selAtoms ribbons

show selAtoms ribbons

hide selAtoms surfaces

hide selAtoms surfaces

hide selAtoms surfaces

show #!1 models

Could not parse stylesheet of object 0x195be678950  

hide selAtoms

Could not parse stylesheet of object 0x195be678950  

hide #!2 models

Could not parse stylesheet of object 0x195be678950  

show #!2 models

Could not parse stylesheet of object 0x195be678950  

save C:\Users\tdiasda/Desktop\image1.png supersample 3

set bgColor white

set bgColor black

set bgColor gray

set bgColor white

set bgColor black

split #2

Chain information for 6gyb.pdb A #2.1  
---  
Chain | Description  
A | No description available  
  
Chain information for 6gyb.pdb B #2.2  
---  
Chain | Description  
B | No description available  
  
Chain information for 6gyb.pdb C #2.3  
---  
Chain | Description  
C | No description available  
  
Chain information for 6gyb.pdb D #2.4  
---  
Chain | Description  
D | No description available  
  
Chain information for 6gyb.pdb E #2.5  
---  
Chain | Description  
E | No description available  
  
Chain information for 6gyb.pdb F #2.6  
---  
Chain | Description  
F | No description available  
  
Chain information for 6gyb.pdb G #2.7  
---  
Chain | Description  
G | No description available  
  
Chain information for 6gyb.pdb H #2.8  
---  
Chain | Description  
H | No description available  
  
Chain information for 6gyb.pdb I #2.9  
---  
Chain | Description  
I | No description available  
  
Chain information for 6gyb.pdb J #2.10  
---  
Chain | Description  
J | No description available  
  
Chain information for 6gyb.pdb K #2.11  
---  
Chain | Description  
K | No description available  
  
Chain information for 6gyb.pdb L #2.12  
---  
Chain | Description  
L | No description available  
  
Chain information for 6gyb.pdb M #2.13  
---  
Chain | Description  
M | No description available  
  
Chain information for 6gyb.pdb N #2.14  
---  
Chain | Description  
N | No description available  
  
Chain information for 6gyb.pdb O #2.15  
---  
Chain | Description  
O | No description available  
  
Chain information for 6gyb.pdb P #2.16  
---  
Chain | Description  
P | No description available  
  
Chain information for 6gyb.pdb Q #2.17  
---  
Chain | Description  
Q | No description available  
  
Chain information for 6gyb.pdb R #2.18  
---  
Chain | Description  
R | No description available  
  
Chain information for 6gyb.pdb S #2.19  
---  
Chain | Description  
S | No description available  
  
Chain information for 6gyb.pdb T #2.20  
---  
Chain | Description  
T | No description available  
  
Chain information for 6gyb.pdb U #2.21  
---  
Chain | Description  
U | No description available  
  
Chain information for 6gyb.pdb a #2.22  
---  
Chain | Description  
a | No description available  
  
Chain information for 6gyb.pdb b #2.23  
---  
Chain | Description  
b | No description available  
  
Chain information for 6gyb.pdb c #2.24  
---  
Chain | Description  
c | No description available  
  
Chain information for 6gyb.pdb d #2.25  
---  
Chain | Description  
d | No description available  
  
Chain information for 6gyb.pdb e #2.26  
---  
Chain | Description  
e | No description available  
  
Chain information for 6gyb.pdb f #2.27  
---  
Chain | Description  
f | No description available  
  
Chain information for 6gyb.pdb g #2.28  
---  
Chain | Description  
g | No description available  
  
Chain information for 6gyb.pdb h #2.29  
---  
Chain | Description  
h | No description available  
  
Chain information for 6gyb.pdb i #2.30  
---  
Chain | Description  
i | No description available  
  
Chain information for 6gyb.pdb j #2.31  
---  
Chain | Description  
j | No description available  
  
Chain information for 6gyb.pdb k #2.32  
---  
Chain | Description  
k | No description available  
  
Chain information for 6gyb.pdb l #2.33  
---  
Chain | Description  
l | No description available  
  
Chain information for 6gyb.pdb m #2.34  
---  
Chain | Description  
m | No description available  
  
Chain information for 6gyb.pdb n #2.35  
---  
Chain | Description  
n | No description available  
  
Chain information for 6gyb.pdb o #2.36  
---  
Chain | Description  
o | No description available  
  
Chain information for 6gyb.pdb p #2.37  
---  
Chain | Description  
p | No description available  
  
Chain information for 6gyb.pdb q #2.38  
---  
Chain | Description  
q | No description available  
  
Chain information for 6gyb.pdb r #2.39  
---  
Chain | Description  
r | No description available  
  
Chain information for 6gyb.pdb s #2.40  
---  
Chain | Description  
s | No description available  
  
Chain information for 6gyb.pdb t #2.41  
---  
Chain | Description  
t | No description available  
  
Chain information for 6gyb.pdb u #2.42  
---  
Chain | Description  
u | No description available  
  
Split 6gyb.pdb (#2) into 42 models  

hide #!1 models

hide #!2 models

show #!2 models

hide #!2.1 models

show #!2.1 models

hide #!2.2 models

show #!2.2 models

hide #!2.3 models

show #!2.3 models

hide #!2.2 models

show #!2.2 models

select #2.1

842 atoms, 864 bonds selected  

~select #2.1

select subtract #2.1

Nothing selected  

select #2.1

842 atoms, 864 bonds selected  

select #2.4

842 atoms, 864 bonds selected  

select #2.1

842 atoms, 864 bonds selected  

select #2.4

842 atoms, 864 bonds selected  

select #2.1

842 atoms, 864 bonds selected  

select #2.4

842 atoms, 864 bonds selected  

select #2.7

842 atoms, 864 bonds selected  

save session "C:/Users/tdiasda/Desktop/Xcitri core-complex.cxs"

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 749, in <lambda>  
    save_action.triggered.connect(lambda arg, s=self, sess=session:
s.file_save_cb(sess))  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 532, in file_save_cb  
    self.save_dialog.display(self, session)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 141, in display  
    fmt.save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 40, in save  
    return self._save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 93, in _session_save  
    run(session, "save session %s" % quote_if_necessary(filename))  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
    results = command.run(text, log=log)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 905, in save_session  
    save(session, filename, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
    fmt.export(session, filename, fmt.nicknames[0], **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 198, in export  
    result = self.export_func(session, path, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 717, in save  
    session.save(output, version=version)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 490, in save  
    mgr.discovery(self._state_containers)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 224, in discovery  
    uid = _UniqueName.from_obj(self.session, value)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
    (obj_cls.__name__, bundle_info.name))  
RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  

RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
(obj_cls.__name__, bundle_info.name))  
  
See log for complete Python traceback.  
  

select #2.2

1840 atoms, 1883 bonds, 1 pseudobond, 1 model selected  

save session "C:/Users/tdiasda/Desktop/Xcitri core-complex.cxs"

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 749, in <lambda>  
    save_action.triggered.connect(lambda arg, s=self, sess=session:
s.file_save_cb(sess))  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 532, in file_save_cb  
    self.save_dialog.display(self, session)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 141, in display  
    fmt.save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 40, in save  
    return self._save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 93, in _session_save  
    run(session, "save session %s" % quote_if_necessary(filename))  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
    results = command.run(text, log=log)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 905, in save_session  
    save(session, filename, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
    fmt.export(session, filename, fmt.nicknames[0], **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 198, in export  
    result = self.export_func(session, path, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 717, in save  
    session.save(output, version=version)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 490, in save  
    mgr.discovery(self._state_containers)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 224, in discovery  
    uid = _UniqueName.from_obj(self.session, value)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
    (obj_cls.__name__, bundle_info.name))  
RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  

RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
(obj_cls.__name__, bundle_info.name))  
  
See log for complete Python traceback.  
  

show #!1 models

hide #!2 models

lighting shadows true intensity 0.5

lighting simple

lighting shadows true

lighting soft

lighting full

lighting flat

lighting flat

lighting full

lighting soft

save session "C:/Users/tdiasda/Desktop/Xcitri core-complex.cxs"

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 749, in <lambda>  
    save_action.triggered.connect(lambda arg, s=self, sess=session:
s.file_save_cb(sess))  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 532, in file_save_cb  
    self.save_dialog.display(self, session)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 141, in display  
    fmt.save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 40, in save  
    return self._save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 93, in _session_save  
    run(session, "save session %s" % quote_if_necessary(filename))  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
    results = command.run(text, log=log)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 905, in save_session  
    save(session, filename, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
    fmt.export(session, filename, fmt.nicknames[0], **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 198, in export  
    result = self.export_func(session, path, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 717, in save  
    session.save(output, version=version)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 490, in save  
    mgr.discovery(self._state_containers)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 224, in discovery  
    uid = _UniqueName.from_obj(self.session, value)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
    (obj_cls.__name__, bundle_info.name))  
RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  

RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
(obj_cls.__name__, bundle_info.name))  
  
See log for complete Python traceback.  
  

color #1 zone #2 distance 5

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

color #1 zone #2 distance 5 by chain

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

color #1 zone #2 distance 5 bychain

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

color #1 zone #2 distance 5 'bychain'

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

show #!2 models

resfit #2/A map #1

Atoms must belong to one chain, got 2 chains A, a  

resfit #2.1/A map #1

hide #!2.2 models

hide #2.2,3,4,7,10,5,6,8,9 target m

hide
#2.2,3,4,7,10,13,16,19,22,25,28,31,34,37,40,5,6,8,9,11,12,14,15,17,18,20,21,23,24,26,27,29,30,32,33,35,36,38,39,41,42
target m

style selAtoms ball

Changed 59318 atom styles  

style selAtoms ball

Changed 59318 atom styles  

style selAtoms sphere

Changed 59318 atom styles  

style selAtoms stick

Changed 59318 atom styles  

style selAtoms ball

Changed 59318 atom styles  

style selAtoms ball

Changed 59318 atom styles  

style selAtoms stick

Changed 59318 atom styles  

color selAtoms bychain

color selAtoms bychain

show selAtoms surfaces

show #!2.2 models

show #!2.3 models

hide #!1 models

show #!1 models

hide #!1.1 models

show #!1.1 models

hide #!1.1 models

show #!1.1 models

hide #!2 models

volume selMaps style surface

show #!2 models

hide #!2 models

show #!2 models

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save session "C:/Users/tdiasda/Desktop/Xcitri core-complex_1.cxs"

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 749, in <lambda>  
    save_action.triggered.connect(lambda arg, s=self, sess=session:
s.file_save_cb(sess))  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 532, in file_save_cb  
    self.save_dialog.display(self, session)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 141, in display  
    fmt.save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 40, in save  
    return self._save(session, filename)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 93, in _session_save  
    run(session, "save session %s" % quote_if_necessary(filename))  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
    results = command.run(text, log=log)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 905, in save_session  
    save(session, filename, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
    fmt.export(session, filename, fmt.nicknames[0], **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 198, in export  
    result = self.export_func(session, path, **kw)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 717, in save  
    session.save(output, version=version)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 490, in save  
    mgr.discovery(self._state_containers)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 224, in discovery  
    uid = _UniqueName.from_obj(self.session, value)  
  File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
    (obj_cls.__name__, bundle_info.name))  
RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  

RuntimeError: Unable to restore objects of CageBuilder class in ChimeraX-Cage-
Builder bundle because the class name is not listed in the name to class table
for session restore  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 142, in from_obj  
(obj_cls.__name__, bundle_info.name))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 369.68
OpenGL renderer: GeForce GT 730/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 7 years ago

Component: UnassignedHigher-Order Structure
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionCageBuilder session restore failure

comment:2 by Tom Goddard, 7 years ago

Resolution: duplicate
Status: assignedclosed

Fixed a month or two ago.

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