Opened 7 years ago
Closed 7 years ago
#1239 closed defect (fixed)
"command line" string not suitable for command line
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.17134 ChimeraX Version: 0.7 (2018-08-01) Description Distance mouse mode gives an errror when two models open because the distance command that is generated does not produce proper atom specifiers -- the structure names is given. This is a bug in the Atom.string(style = "command line") method. Log: UCSF ChimeraX version: 0.7 (2018-08-01) OpenGL version: 3.3.0 NVIDIA 391.58 OpenGL renderer: Quadro P6000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation How to cite UCSF ChimeraX open 1a0m format mmCIF fromDatabase pdb Summary of feedback from opening 1a0m fetched from pdb --- notes | Used PDBx fixed column width tables to speed up reading mmCIF file Used PDBx keywords to speed up reading mmCIF file Chain information for 1a0m #1 --- Chain | Description A B | α-conotoxin [TYR15]-epi 1a0m citation: Hu, S.H., Loughnan, M., Miller, R., Weeks, C.M., Blessing, R.H., Alewood, P.F., Lewis, R.J., Martin, J.L. (1998). The 1.1 A resolution crystal structure of [Tyr15]EpI, a novel alpha-conotoxin from Conus episcopatus, solved by direct methods. Biochemistry, 37, 11425-11433. PMID: 9708977. DOI: 10.1021/bi9806549 Opened mmCIF data containing 276 atoms and 242 bonds open 1a0m format mmCIF fromDatabase pdb Summary of feedback from opening 1a0m fetched from pdb --- notes | Used PDBx fixed column width tables to speed up reading mmCIF file Used PDBx keywords to speed up reading mmCIF file Chain information for 1a0m #2 --- Chain | Description A B | α-conotoxin [TYR15]-epi 1a0m citation: Hu, S.H., Loughnan, M., Miller, R., Weeks, C.M., Blessing, R.H., Alewood, P.F., Lewis, R.J., Martin, J.L. (1998). The 1.1 A resolution crystal structure of [Tyr15]EpI, a novel alpha-conotoxin from Conus episcopatus, solved by direct methods. Biochemistry, 37, 11425-11433. PMID: 9708977. DOI: 10.1021/bi9806549 Opened mmCIF data containing 276 atoms and 242 bonds show #1 ui mousemode rightMode distance distance 1a0m #1/A:59@O 1a0m #1/A:26@O Missing or invalid "atoms" argument: invalid atom-pair specifier Missing or invalid "atoms" argument: invalid atom-pair specifier OpenGL version: 3.3.0 NVIDIA 391.58 OpenGL renderer: Quadro P6000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → "command line" string not suitable for command line |
comment:2 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
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