Opened 7 years ago

Closed 7 years ago

#1239 closed defect (fixed)

"command line" string not suitable for command line

Reported by: goddard@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.7 (2018-08-01)
Description
Distance mouse mode gives an errror when two models open because the distance command that is generated does not produce proper atom specifiers -- the structure names is given.

This is a bug in the Atom.string(style = "command line") method.



Log:
UCSF ChimeraX version: 0.7 (2018-08-01)  
OpenGL version: 3.3.0 NVIDIA 391.58  
OpenGL renderer: Quadro P6000/PCIe/SSE2  
OpenGL vendor: NVIDIA Corporation  
How to cite UCSF ChimeraX  

open 1a0m format mmCIF fromDatabase pdb

Summary of feedback from opening 1a0m fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 1a0m #1  
---  
Chain | Description  
A B | α-conotoxin [TYR15]-epi  
  

1a0m citation:    Hu, S.H., Loughnan, M., Miller, R., Weeks, C.M., Blessing,
R.H., Alewood, P.F., Lewis, R.J., Martin, J.L. (1998). The 1.1 A resolution
crystal structure of [Tyr15]EpI, a novel alpha-conotoxin from Conus
episcopatus, solved by direct methods. Biochemistry, 37, 11425-11433. PMID:
9708977. DOI: 10.1021/bi9806549  
Opened mmCIF data containing 276 atoms and 242 bonds  

open 1a0m format mmCIF fromDatabase pdb

Summary of feedback from opening 1a0m fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 1a0m #2  
---  
Chain | Description  
A B | α-conotoxin [TYR15]-epi  
  

1a0m citation:    Hu, S.H., Loughnan, M., Miller, R., Weeks, C.M., Blessing,
R.H., Alewood, P.F., Lewis, R.J., Martin, J.L. (1998). The 1.1 A resolution
crystal structure of [Tyr15]EpI, a novel alpha-conotoxin from Conus
episcopatus, solved by direct methods. Biochemistry, 37, 11425-11433. PMID:
9708977. DOI: 10.1021/bi9806549  
Opened mmCIF data containing 276 atoms and 242 bonds  

show #1

ui mousemode rightMode distance

distance 1a0m #1/A:59@O 1a0m #1/A:26@O

Missing or invalid "atoms" argument: invalid atom-pair specifier  

Missing or invalid "atoms" argument: invalid atom-pair specifier  




OpenGL version: 3.3.0 NVIDIA 391.58
OpenGL renderer: Quadro P6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by Eric Pettersen, 7 years ago

Component: UnassignedCore
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submission"command line" string not suitable for command line

comment:2 by Eric Pettersen, 7 years ago

Resolution: fixed
Status: acceptedclosed
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