Opened 7 years ago

Closed 7 years ago

#1231 closed defect (fixed)

Slow rotation after presets used

Reported by: goddard@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.7 (2018-08-02)
Description
Rotating 5cd4 is very slow (a few frames per second) after using Preset / Cartoon followed by Preset / Original Look.  The number of triangles per sphere ends up at 2000 but should be much smaller.  This did not happen with 6caj which does not have nucleotides.  Greg says nucleotides does some explicit level of detail call that is perhaps related to the failure of level of detail to adjust properly.

Log:
UCSF ChimeraX version: 0.7 (2018-08-02)  
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102  
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine  
OpenGL vendor: NVIDIA Corporation  
How to cite UCSF ChimeraX  

open 5cd4

Summary of feedback from opening 5cd4 fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 5cd4 #1  
---  
Chain | Description  
A M | CRISPR system Cascade subunit CasE  
B C D E F G N O P Q R S | CRISPR system Cascade subunit CasC  
H T | CRISPR system Cascade subunit CasD  
I U | CRISPR system Cascade subunit CasA  
J K V W | CRISPR system Cascade subunit CasB  
L X | crRNA  
  
5cd4 mmCIF Assemblies | 1| author_and_software_defined_assembly | 2|
author_and_software_defined_assembly  

5cd4 citation:    van Erp, P.B., Jackson, R.N., Carter, J., Golden, S.M.,
Bailey, S., Wiedenheft, B. (2015). Mechanism of CRISPR-RNA guided recognition
of DNA targets in Escherichia coli. Nucleic Acids Res., 43, 8381-8391. PMID:
26243775. DOI: 10.1093/nar/gkv793  
Opened mmCIF data containing 53308 atoms and 54550 bonds  

graphics

Atom triangles 2000, bond triangles 160, ribbon divisions 20, max framerate 60  

toolshed show "Bug Reporter"




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation

Change History (3)

comment:1 by Tom Goddard, 7 years ago

Component: UnassignedGraphics
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionSlow rotation after presets used

Duplicate of #1179.

comment:2 by Tom Goddard, 7 years ago

Fixed.

Level of detail updating sometimes did not happen depending on order that "graphics update" triggers fired in.

comment:3 by Tom Goddard, 7 years ago

Resolution: fixed
Status: assignedclosed
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