Opened 7 years ago

Closed 6 years ago

#1141 closed defect (can't reproduce)

Unable to install clipper

Reported by: kenneth.satyshur@… Owned by: Conrad Huang
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc: Tristan Croll
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

I tried to install Clipper on RHEL7.4 after install of ChimeraX. Got this error/
Linux paprika 3.10.0-693.21.1.el7.x86_64 #1 SMP Fri Feb 23 18:54:16 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux





RuntimeError: Processing ./Downloads/ChimeraX_Clipper-0.2.1-cp36-cp36m-linux_x86_64.whl

Collecting Clipper-Python>=0.1.1 (from ChimeraX-Clipper==0.2.1)

Downloading https://files.pythonhosted.org/packages/43/84/e180c8bba9eb779cd46c809c66f5cd625d19d5bd3533160d19c7924af10a/Clipper_Python-0.1.1-cp36-cp36m-manylinux1_x86_64.whl <https://files.pythonhosted.org/packages/43/84/e180c8bba9eb779cd46c809c66f5cd625d19d5bd3533160d19c7924af10a/Clipper_Python-0.1.1-cp36-cp36m-manylinux1_x86_64.whl> (31.1MB)

Collecting ChimeraX-Core==0.6 (from ChimeraX-Clipper==0.2.1)

Could not find a version that satisfies the requirement ChimeraX-Core==0.6 (from ChimeraX-Clipper==0.2.1) (from versions: )

No matching distribution found for ChimeraX-Core==0.6 (from ChimeraX-Clipper==0.2.1)

You are using pip version 9.0.3, however version 10.0.1 is available.

You should consider upgrading via the 'pip install --upgrade pip' command.





File "/home/xray/chimerax/lib/python3.6/site-packages/chimerax/core/toolshed/__init__.py", line 757, in _run_pip

raise RuntimeError(s)



See log for complete Python traceback.



Kenneth A. Satyshur, M.S., Ph.D.
Senior Scientist,
Depts. Bacteriology, Bio Molecular Chemistry,
Neuroscience, Oncology, Carbone Cancer Center,
and the School of Pharmacy
University of Wisconsin-Madison
Madison, Wisconsin, 53706
608-215-5207

Change History (2)

comment:1 by pett, 7 years ago

Cc: Tristan Croll added
Component: UnassignedTool Shed
Owner: set to Conrad Huang
Platform: all
Project: ChimeraX
Status: newassigned

comment:2 by Conrad Huang, 6 years ago

Resolution: can't reproduce
Status: assignedclosed

ISOLDE/Clipper installation has evolved quite a bit since this ticket and should be working with ChimeraX 0.8 and 0.9.

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