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Opened 22 months ago
Closed 22 months ago
#10453 closed defect (can't reproduce)
Crash removing dock widget
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000108418dc0 (most recent call first):
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2301 in destroy
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2165 in _destroy
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 772 in remove_tool
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 335 in remove_tool
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 154 in delete
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 639 in close_request
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2267 in
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/yl/wxj2zb9n1p7fl6smq7wkwh7w0000gn/T/AppTranslocation/6648FAEB-CADC-4872-B479-C038142764BE/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [55301]
Path: /Volumes/VOLUME/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.5.0 (1.5.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [55301]
User ID: 501
Date/Time: 2024-01-10 12:18:54.665 +0100
OS Version: Mac OS X 10.15.7 (19H15)
Report Version: 12
Bridge OS Version: 4.6 (17P6610)
Anonymous UUID: D3F18BB2-AD25-B6D6-768B-0CF8673819DC
Sleep/Wake UUID: DE1DF07B-EA8F-4CC7-AC29-444A2474FEA8
Time Awake Since Boot: 850000 seconds
Time Since Wake: 61000 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
Calling windowShouldClose: on the delegate for the QNSWindow 0x7f998ae0b2d0
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff672c433a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff67380e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff671db93e raise + 26
3 libsystem_platform.dylib 0x00007fff673755fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWidgets 0x000000011567f00e QMainWindow::removeDockWidget(QDockWidget*) + 30
6 QtWidgets.abi3.so 0x000000011508378f meth_QMainWindow_removeDockWidget(_object*, _object*) + 95
7 org.python.python 0x000000010543971d cfunction_call + 125
8 org.python.python 0x00000001053fa5b7 _PyObject_MakeTpCall + 359
9 org.python.python 0x00000001054d2e9c call_function + 876
10 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
11 org.python.python 0x00000001053fad28 function_code_fastcall + 104
12 org.python.python 0x00000001054d2e0c call_function + 732
13 org.python.python 0x00000001054d027e _PyEval_EvalFrameDefault + 25518
14 org.python.python 0x00000001053fad28 function_code_fastcall + 104
15 org.python.python 0x00000001054d2e0c call_function + 732
16 org.python.python 0x00000001054d027e _PyEval_EvalFrameDefault + 25518
17 org.python.python 0x00000001053fad28 function_code_fastcall + 104
18 org.python.python 0x00000001053fcd6a method_vectorcall + 202
19 org.python.python 0x00000001054d2e0c call_function + 732
20 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
21 org.python.python 0x00000001053fad28 function_code_fastcall + 104
22 org.python.python 0x00000001053fcd6a method_vectorcall + 202
23 org.python.python 0x00000001054d2e0c call_function + 732
24 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
25 org.python.python 0x00000001053fad28 function_code_fastcall + 104
26 org.python.python 0x00000001054d2e0c call_function + 732
27 org.python.python 0x00000001054d027e _PyEval_EvalFrameDefault + 25518
28 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
29 org.python.python 0x00000001053facb1 _PyFunction_Vectorcall + 289
30 org.python.python 0x00000001053fcd6a method_vectorcall + 202
31 org.python.python 0x00000001054d2e0c call_function + 732
32 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
33 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
34 org.python.python 0x00000001053facb1 _PyFunction_Vectorcall + 289
35 sip.cpython-39-darwin.so 0x0000000114eaa397 sip_api_call_procedure_method + 199
36 QtWidgets.abi3.so 0x0000000114fd30e8 sipQDockWidget::closeEvent(QCloseEvent*) + 104
37 QtWidgets 0x000000011553d31a QWidget::event(QEvent*) + 1226
38 QtWidgets 0x0000000115656df7 QDockWidget::event(QEvent*) + 775
39 QtWidgets.abi3.so 0x0000000114fd20df sipQDockWidget::event(QEvent*) + 191
40 QtWidgets 0x00000001154eaa87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
41 QtWidgets 0x00000001154eba43 QApplication::notify(QObject*, QEvent*) + 499
42 QtWidgets.abi3.so 0x000000011500a1e6 sipQApplication::notify(QObject*, QEvent*) + 230
43 QtCore 0x0000000112db6c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
44 QtWidgets 0x000000011553cc7e QWidgetPrivate::handleClose(QWidgetPrivate::CloseMode) + 126
45 QtWidgets 0x0000000115556420 0x1154de000 + 492576
46 QtGui 0x0000000115bca2c6 QWindow::event(QEvent*) + 534
47 QtWidgets 0x00000001154eaa87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
48 QtWidgets 0x00000001154eba43 QApplication::notify(QObject*, QEvent*) + 499
49 QtWidgets.abi3.so 0x000000011500a1e6 sipQApplication::notify(QObject*, QEvent*) + 230
50 QtCore 0x0000000112db6c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
51 QtGui 0x0000000115b7891b QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 2123
52 QtGui 0x0000000115bd625e 0x115af5000 + 922206
53 libqcocoa.dylib 0x000000012222665a 0x1221da000 + 312922
54 libqcocoa.dylib 0x0000000122252b75 0x1221da000 + 494453
55 com.apple.AppKit 0x00007fff2b39bd51 __19-[NSWindow __close]_block_invoke + 181
56 com.apple.AppKit 0x00007fff2b39bc8f -[NSWindow __close] + 292
57 com.apple.AppKit 0x00007fff2b2177a7 -[NSApplication(NSResponder) sendAction:to:from:] + 299
58 com.apple.AppKit 0x00007fff2b217642 -[NSControl sendAction:to:] + 86
59 com.apple.AppKit 0x00007fff2b217574 __26-[NSCell _sendActionFrom:]_block_invoke + 136
60 com.apple.AppKit 0x00007fff2b217476 -[NSCell _sendActionFrom:] + 171
61 com.apple.AppKit 0x00007fff2b2173bd -[NSButtonCell _sendActionFrom:] + 96
62 com.apple.AppKit 0x00007fff2b21369b NSControlTrackMouse + 1745
63 com.apple.AppKit 0x00007fff2b212fa2 -[NSCell trackMouse:inRect:ofView:untilMouseUp:] + 130
64 com.apple.AppKit 0x00007fff2b212e61 -[NSButtonCell trackMouse:inRect:ofView:untilMouseUp:] + 691
65 com.apple.AppKit 0x00007fff2b2121dd -[NSControl mouseDown:] + 748
66 com.apple.AppKit 0x00007fff2b38584f -[_NSThemeWidget mouseDown:] + 86
67 com.apple.AppKit 0x00007fff2b2105f0 -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 4914
68 com.apple.AppKit 0x00007fff2b17ae21 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2612
69 com.apple.AppKit 0x00007fff2b17a1c9 -[NSWindow(NSEventRouting) sendEvent:] + 349
70 libqcocoa.dylib 0x0000000122250b4f 0x1221da000 + 486223
71 com.apple.AppKit 0x00007fff2b178554 -[NSApplication(NSEvent) sendEvent:] + 352
72 libqcocoa.dylib 0x00000001221e540a 0x1221da000 + 46090
73 com.apple.AppKit 0x00007fff2afc55bf -[NSApplication run] + 707
74 libqcocoa.dylib 0x00000001221f30ac 0x1221da000 + 102572
75 QtCore 0x0000000112dc0326 QEventLoop::exec(QFlags) + 486
76 QtCore 0x0000000112db7235 QCoreApplication::exec() + 133
77 QtWidgets.abi3.so 0x00000001150f6d9a meth_QApplication_exec(_object*, _object*) + 90
78 org.python.python 0x000000010543971d cfunction_call + 125
79 org.python.python 0x00000001053fa5b7 _PyObject_MakeTpCall + 359
80 org.python.python 0x00000001054d2e9c call_function + 876
81 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
82 org.python.python 0x00000001053fad28 function_code_fastcall + 104
83 org.python.python 0x00000001053fcd6a method_vectorcall + 202
84 org.python.python 0x00000001054d2e0c call_function + 732
85 org.python.python 0x00000001054d02a2 _PyEval_EvalFrameDefault + 25554
86 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
87 org.python.python 0x00000001053facb1 _PyFunction_Vectorcall + 289
88 org.python.python 0x00000001054d2e0c call_function + 732
89 org.python.python 0x00000001054d034b _PyEval_EvalFrameDefault + 25723
90 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
91 org.python.python 0x00000001054c9dab PyEval_EvalCode + 139
92 org.python.python 0x00000001054c6c12 builtin_exec + 626
93 org.python.python 0x0000000105439023 cfunction_vectorcall_FASTCALL + 195
94 org.python.python 0x00000001054d2e0c call_function + 732
95 org.python.python 0x00000001054d034b _PyEval_EvalFrameDefault + 25723
96 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
97 org.python.python 0x00000001053facb1 _PyFunction_Vectorcall + 289
98 org.python.python 0x00000001054d2e0c call_function + 732
99 org.python.python 0x00000001054d034b _PyEval_EvalFrameDefault + 25723
100 org.python.python 0x00000001054d3b03 _PyEval_EvalCode + 2611
101 org.python.python 0x00000001053facb1 _PyFunction_Vectorcall + 289
102 org.python.python 0x0000000105539870 pymain_run_module + 208
103 org.python.python 0x0000000105538f87 Py_RunMain + 1431
104 org.python.python 0x000000010553958f pymain_main + 223
105 org.python.python 0x000000010553949b Py_Main + 43
106 edu.ucsf.cgl.ChimeraX 0x00000001053aedc8 main + 120
107 libdyld.dylib 0x00007fff6717ccc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff672c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67381425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010879c23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff672c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67381425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010879c23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff672c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67381425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010879c23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff672c6b96 kevent64 + 10
1 QtWebEngineCore 0x000000011a6e0a2a 0x116780000 + 66456106
2 QtWebEngineCore 0x000000011a6e0927 0x116780000 + 66455847
3 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
4 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
5 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
6 QtWebEngineCore 0x000000011a6672ad 0x116780000 + 65958573
7 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
8 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
9 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 5:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff672c6b96 kevent64 + 10
1 QtWebEngineCore 0x000000011a6e0a2a 0x116780000 + 66456106
2 QtWebEngineCore 0x000000011a6e0927 0x116780000 + 66455847
3 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
4 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
5 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
6 QtWebEngineCore 0x00000001195a53a2 0x116780000 + 48386978
7 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
8 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
9 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff672c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67381425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011a6a6d1b 0x116780000 + 66219291
3 QtWebEngineCore 0x000000011c77492d 0x116780000 + 100616493
4 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
5 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a5e4168 0x116780000 + 65421672
4 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
5 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
6 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
7 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
8 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
9 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff672c6b96 kevent64 + 10
1 QtWebEngineCore 0x000000011a6e0a2a 0x116780000 + 66456106
2 QtWebEngineCore 0x000000011a6e0927 0x116780000 + 66455847
3 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
4 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
5 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
6 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
7 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
8 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a5e4168 0x116780000 + 65421672
4 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
5 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
6 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
7 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
8 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
9 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff672c6b96 kevent64 + 10
1 QtWebEngineCore 0x000000011a6e0a2a 0x116780000 + 66456106
2 QtWebEngineCore 0x000000011a6e0927 0x116780000 + 66455847
3 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
4 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
5 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
6 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
7 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
8 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a67426c 0x116780000 + 66011756
5 QtWebEngineCore 0x000000011a673ecd 0x116780000 + 66010829
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2dd12ef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2dd119c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2dd10e3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2b176954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 17:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a673f9a 0x116780000 + 66011034
5 QtWebEngineCore 0x000000011a673e0d 0x116780000 + 66010637
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6aebef 0x116780000 + 66251759
4 QtWebEngineCore 0x000000011a5e41c9 0x116780000 + 65421769
5 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
6 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
7 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
8 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
9 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
10 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 20:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x00007fff672c6b96 kevent64 + 10
1 QtWebEngineCore 0x000000011a6e0a2a 0x116780000 + 66456106
2 QtWebEngineCore 0x000000011a6e0927 0x116780000 + 66455847
3 QtWebEngineCore 0x000000011a65da5c 0x116780000 + 65919580
4 QtWebEngineCore 0x000000011a615998 0x116780000 + 65624472
5 QtWebEngineCore 0x000000011a67feb8 0x116780000 + 66059960
6 QtWebEngineCore 0x000000011a68004a 0x116780000 + 66060362
7 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
8 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 21:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a67426c 0x116780000 + 66011756
5 QtWebEngineCore 0x000000011a673ddd 0x116780000 + 66010589
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a67426c 0x116780000 + 66011756
5 QtWebEngineCore 0x000000011a673e6d 0x116780000 + 66010733
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a67426c 0x116780000 + 66011756
5 QtWebEngineCore 0x000000011a673e6d 0x116780000 + 66010733
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 25:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a673f9a 0x116780000 + 66011034
5 QtWebEngineCore 0x000000011a673e6d 0x116780000 + 66010733
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 26:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff672bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff672be170 mach_msg + 60
2 QtWebEngineCore 0x000000011a6aee26 0x116780000 + 66252326
3 QtWebEngineCore 0x000000011a6737bf 0x116780000 + 66009023
4 QtWebEngineCore 0x000000011a673f9a 0x116780000 + 66011034
5 QtWebEngineCore 0x000000011a673ddd 0x116780000 + 66010589
6 QtWebEngineCore 0x000000011a6a7908 0x116780000 + 66222344
7 libsystem_pthread.dylib 0x00007fff67381109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6737cb8b thread_start + 15
Thread 27:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 29:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00007fff6737cb68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000108418dc0 rcx: 0x00007f997d64da58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f997d64da80 rsp: 0x00007f997d64da58
r8: 0x00007f997d64df48 r9: 0x98883fb17afc594c r10: 0x0000000108418dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007f997d404490 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff672c433a rfl: 0x0000000000000246 cr2: 0x00000001056247b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6725c000 - 0x7fff67264fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff67265000 - 0x7fff6726cfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6726d000 - 0x7fff6726effb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6726f000 - 0x7fff672bcff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff672bd000 - 0x7fff672e9ff7 libsystem_kernel.dylib (6153.141.2.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff672ea000 - 0x7fff67331fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff67332000 - 0x7fff67359fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6735a000 - 0x7fff67367ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff67368000 - 0x7fff67371ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff67372000 - 0x7fff6737afef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6737b000 - 0x7fff67385fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff67386000 - 0x7fff6738aff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6738b000 - 0x7fff6738dfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6738e000 - 0x7fff67395ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff67396000 - 0x7fff673acff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff673ae000 - 0x7fff673b3ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff673b4000 - 0x7fff673e9ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 109
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 510846
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 1540K 5
CG image 288K 21
CoreAnimation 5832K 62
CoreGraphics 8K 1
CoreImage 40K 6
CoreUI image data 536K 7
Foundation 44K 2
Kernel Alloc Once 8K 1
MALLOC 664.9M 711
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 24K 4
OpenGL GLSL 384K 4
STACK GUARD 128K 32
Stack 181.8M 33
Stack Guard 56.0M 1
VM_ALLOCATE 130.1M 119
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 63.7M 597
__DATA_CONST 60K 5
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 414.0M 172
__OBJC_RO 32.3M 1
__OBJC_RW 1860K 2
__TEXT 632.6M 565
__UNICODE 564K 1
mapped file 110.7M 75
shared memory 2856K 26
=========== ======= =======
TOTAL 2.4G 2467
TOTAL, minus reserved VM space 2.3G 2467
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
> alphafold predict Q9SKN2,A1ZAW0
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
AlphaFold prediction finished
Results in /Users/evantard/Downloads/ChimeraX/AlphaFold/prediction_10
> open
> /Users/evantard/Downloads/ChimeraX/AlphaFold/prediction_10/best_model.pdb
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bychain
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/evantard/Downloads/ChimeraX/AlphaFold/prediction_8/best_model.pdb
Chain information for best_model.pdb #1
---
Chain | Description
A B | No description available
C D | No description available
> open
> /Users/evantard/Downloads/ChimeraX/AlphaFold/prediction_8/best_model_pae.json
Failed opening file
/Users/evantard/Downloads/ChimeraX/AlphaFold/prediction_8/best_model_pae.json:
'Channels'
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,3
Processor Name: Quad-Core Intel Core i5
Processor Speed: 1,4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 1037.147.4.0.0 (iBridge: 17.16.16610.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H15)
Kernel Version: Darwin 19.6.0
Time since boot: 30 days 2:46
Graphics/Displays:
Intel Iris Plus Graphics 645:
Chipset Model: Intel Iris Plus Graphics 645
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea6
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
X2485:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 1120050200083
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Automatically Adjust Brightness: No
Adapter Firmware Version: ff.c1
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 22 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash removing dock widget |
comment:2 by , 22 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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