Opened 22 months ago
Closed 22 months ago
#10445 closed defect (duplicate)
segger savePath arg allows folder
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Volume Data | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-5.4.115-1.el8.elrepo.x86_64-x86_64-with-glibc2.28 ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /archive/processing/andre/dba_ips_ctrl/maps/unsharp_post_corrected.mrc Opened unsharp_post_corrected.mrc as #1, grid size 480,480,480, pixel 0.85, shown at level 0.0182, step 2, values float32 > volume #1 step 1 > open > /archive/processing/disha/hES_wildtype/relion/Refine3D/3d_ref_shiny/run_class001.mrc Opened run_class001.mrc as #2, grid size 480,480,480, pixel 0.85, shown at level 0.0137, step 2, values float32 > ui tool show "Fit in Map" > fitmap #1 inMap #2 Fit map unsharp_post_corrected.mrc in map run_class001.mrc using 1107194 points correlation = 0.3467, correlation about mean = 0.03433, overlap = 114.4 steps = 172, shift = 8.79, angle = 3.05 degrees Position of unsharp_post_corrected.mrc (#1) relative to run_class001.mrc (#2) coordinates: Matrix rotation and translation 0.99858253 0.04957284 0.01937709 -11.15880780 -0.04952448 0.99876850 -0.00296779 3.68200937 -0.01950035 0.00200395 0.99980784 8.26055496 Axis 0.04665381 0.36481801 -0.92990927 Axis point 119.35103556 222.05689934 0.00000000 Rotation angle (degrees) 3.05435623 Shift along axis -6.85890411 > select add #2 2 models selected > ui mousemode right "rotate selected models" > view matrix models > #2,-0.24128,0.85009,0.46812,-19.135,-0.42548,0.34088,-0.83832,386.49,-0.87221,-0.40144,0.27944,399.56 > view matrix models > #2,0.22049,0.8816,0.41734,-109.14,-0.74785,0.42748,-0.50791,369.55,-0.62618,-0.20012,0.75356,216.05 > view matrix models > #2,0.34952,0.85737,0.37782,-122.44,-0.61965,0.514,-0.59316,341.88,-0.70276,-0.026796,0.71092,203.17 > ui mousemode right "rotate selected models" > ui mousemode right "translate selected models" > view matrix models > #2,0.34952,0.85737,0.37782,-159.95,-0.61965,0.514,-0.59316,261.43,-0.70276,-0.026796,0.71092,1.9852 > view matrix models > #2,0.34952,0.85737,0.37782,-161.15,-0.61965,0.514,-0.59316,262.53,-0.70276,-0.026796,0.71092,1.7991 > ui mousemode right "rotate selected models" > view matrix models > #2,-0.26338,0.85607,0.44471,-50.132,-0.96465,-0.23805,-0.11308,398.13,0.0090582,-0.45878,0.88851,-84.948 > view matrix models > #2,-0.030411,0.99841,0.047413,-50.528,-0.81942,0.0022605,-0.57318,406.89,-0.57238,-0.056282,0.81805,-38.944 > view matrix models > #2,-0.22522,0.96753,0.11468,-17.69,-0.69019,-0.075356,-0.7197,425.44,-0.68769,-0.24125,0.68475,49.028 > view matrix models > #2,-0.26813,0.95538,0.12394,-8.2557,-0.65683,-0.087177,-0.74898,426.85,-0.70476,-0.28223,0.65089,67.644 > ui mousemode right "translate selected models" > view matrix models > #2,-0.26813,0.95538,0.12394,45.212,-0.65683,-0.087177,-0.74898,494.9,-0.70476,-0.28223,0.65089,275.18 > view matrix models > #2,-0.26813,0.95538,0.12394,43.817,-0.65683,-0.087177,-0.74898,496.76,-0.70476,-0.28223,0.65089,275.94 > volume #1 level 0.005 > volume #1 level 0.009 > volume #2 level 0.007 > view matrix models > #2,-0.26813,0.95538,0.12394,2.3121,-0.65683,-0.087177,-0.74898,415.42,-0.70476,-0.28223,0.65089,66.379 > view matrix models > #2,-0.26813,0.95538,0.12394,-10.554,-0.65683,-0.087177,-0.74898,424.69,-0.70476,-0.28223,0.65089,60.015 > view matrix models > #2,-0.26813,0.95538,0.12394,46.813,-0.65683,-0.087177,-0.74898,507.42,-0.70476,-0.28223,0.65089,261.97 > fitmap #1 inMap #2 Fit map unsharp_post_corrected.mrc in map run_class001.mrc using 3266529 points correlation = 0.9142, correlation about mean = 0.8267, overlap = 967.6 steps = 292, shift = 20.6, angle = 11.3 degrees Position of unsharp_post_corrected.mrc (#1) relative to run_class001.mrc (#2) coordinates: Matrix rotation and translation -0.34760533 -0.70403515 -0.61927784 541.12450731 0.93601792 -0.22170677 -0.27334331 117.48745463 0.05514521 -0.67467074 0.73605597 178.15899180 Axis -0.22073346 -0.37093834 0.90204295 Axis point 250.87552903 287.67269248 0.00000000 Rotation angle (degrees) 114.62188537 Shift along axis -2.31782192 > view matrix models > #2,-0.26813,0.95538,0.12394,53.133,-0.65683,-0.087177,-0.74898,495.25,-0.70476,-0.28223,0.65089,246.09 > view matrix models > #2,-0.26813,0.95538,0.12394,48.677,-0.65683,-0.087177,-0.74898,505.21,-0.70476,-0.28223,0.65089,260.6 > view matrix models > #2,-0.26813,0.95538,0.12394,49.587,-0.65683,-0.087177,-0.74898,508.37,-0.70476,-0.28223,0.65089,260.54 > select add #1 4 models selected > select subtract #2 2 models selected > transparency sel 50 > view matrix models > #1,0.99429,-0.10666,-0.0038755,35.072,0.10542,0.98708,-0.12071,9.1679,0.0167,0.11961,0.99268,-35.094 > fitmap #1 inMap #2 Fit map unsharp_post_corrected.mrc in map run_class001.mrc using 3266529 points correlation = 0.9142, correlation about mean = 0.8267, overlap = 967.6 steps = 120, shift = 4.76, angle = 0.00711 degrees Position of unsharp_post_corrected.mrc (#1) relative to run_class001.mrc (#2) coordinates: Matrix rotation and translation -0.34756804 -0.70404900 -0.61928302 541.12604054 0.93603808 -0.22175830 -0.27323243 117.47308917 0.05503787 -0.67463936 0.73609277 178.15343366 Axis -0.22077592 -0.37088004 0.90205653 Axis point 250.88641272 287.65722047 0.00000000 Rotation angle (degrees) 114.62117454 Shift along axis -2.33155649 > select clear [Repeated 1 time(s)] > volume #1 level 0.01 > volume #1 level 0.02 > open > /archive/processing/andre/dba_ips_ctrl/relion/Refine3D/unsharp/run_ct24_class001.mrc Opened run_ct24_class001.mrc as #3, grid size 480,480,480, pixel 0.85, shown at level 0.0109, step 2, values float32 > select add #3 2 models selected > view matrix models #3,1,0,0,-26.63,0,1,0,-10.64,0,0,1,-229.85 > view matrix models #3,1,0,0,-28.317,0,1,0,-8.0523,0,0,1,-225.86 > ui mousemode right "rotate selected models" > view matrix models > #3,0.69958,-0.58756,-0.40665,239.54,0.63989,0.7684,-0.0094101,-87.007,0.318,-0.25363,0.91353,-219.18 > view matrix models > #3,-0.030985,-0.99833,0.048704,370.69,0.85211,-0.00091382,0.52337,-88.443,-0.52245,0.057717,0.85072,-100.64 > view matrix models > #3,0.043376,-0.99421,-0.098333,386.84,0.74351,-0.033618,0.66787,-91.371,-0.66731,-0.10208,0.73775,-14.628 > view matrix models > #3,-0.090829,-0.93781,0.33505,308.29,0.97646,-0.017766,0.21498,-43.061,-0.19566,0.34669,0.91735,-239.31 > view matrix models > #3,-0.51627,-0.11174,0.84911,113.95,-0.0076601,0.99201,0.12589,-32.183,-0.85639,0.05849,-0.513,261.68 > view matrix models > #3,-0.98261,-0.099497,-0.15679,422.88,0.063323,0.61419,-0.78661,228.29,0.17456,-0.78286,-0.59721,244.72 > open /archive/processing/andre/dba_ips_ctrl/maps/unsharp_correct_hand.mrc Opened unsharp_correct_hand.mrc as #4, grid size 480,480,480, pixel 0.85, shown at level 0.0109, step 2, values float32 > close #3 > fitmap #1 inMap #2 Fit map unsharp_post_corrected.mrc in map run_class001.mrc using 935572 points correlation = 0.9607, correlation about mean = 0.7826, overlap = 760.3 steps = 40, shift = 0.00995, angle = 0.00806 degrees Position of unsharp_post_corrected.mrc (#1) relative to run_class001.mrc (#2) coordinates: Matrix rotation and translation -0.34758240 -0.70403173 -0.61929459 541.12376265 0.93602555 -0.22167488 -0.27334304 117.47251812 0.05516012 -0.67468479 0.73604198 178.15540511 Axis -0.22073906 -0.37095193 0.90203599 Axis point 250.87986778 287.67180925 0.00000000 Rotation angle (degrees) 114.62059896 Shift along axis -2.32122241 > fitmap #2 inMap #4 Fit map run_class001.mrc in map unsharp_correct_hand.mrc using 325028 points correlation = 0.9425, correlation about mean = 0.7862, overlap = 63.9 steps = 204, shift = 19.3, angle = 9.25 degrees Position of run_class001.mrc (#2) relative to unsharp_correct_hand.mrc (#4) coordinates: Matrix rotation and translation -0.34762001 0.93602535 0.05492605 68.34016988 -0.70399817 -0.22186100 -0.67465864 527.23124705 -0.61931165 -0.27319268 0.73608345 236.07286046 Axis 0.22081752 0.37084961 -0.90205886 Axis point 250.89128204 287.65225473 0.00000000 Rotation angle (degrees) 114.62634237 Shift along axis -2.33740575 > hide #!1 models > transparency #2.1#4.1 50 > select add #4 2 models selected > transparency sel 0 > select clear > open /yonath_group/disha/Downloads/ComplexModeler(2).cif Summary of feedback from opening /yonath_group/disha/Downloads/ComplexModeler(2).cif --- warnings | Missing entity information. Treating each chain as a separate entity. Atom H is not in the residue template for MET /O:1 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. Chain information for ComplexModeler(2).cif #3 --- Chain | Description 0 1 H L e f k l p | No description available 2 | No description available 4 | No description available 5 | No description available 6 | No description available 7 K V W | No description available A | No description available A | No description available B | No description available C | No description available C | No description available D | No description available D | No description available E | No description available F | No description available F N P | No description available G | No description available G | No description available H | No description available I | No description available I | No description available J | No description available K | No description available L | No description available M | No description available M Y | No description available N | No description available O | No description available O T | No description available P | No description available Q | No description available Q | No description available R | No description available R | No description available S | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available Z | No description available a | No description available a | No description available b | No description available b | No description available c | No description available c | No description available d | No description available e | No description available f | No description available g | No description available g r t z | No description available h | No description available h | No description available j | No description available > hide #!2 models > hide #!4 models > close #1 > close #2 > close #4 > open > /yonath_group/disha/Downloads/cryosparc_P10_J38_005_volume_map_sharp(3).mrc Opened cryosparc_P10_J38_005_volume_map_sharp(3).mrc as #1, grid size 560,560,560, pixel 0.85, shown at level 0.171, step 4, values float32 > volume #1 step 1 > select /T/T 2156 atoms, 2177 bonds, 1 pseudobond, 131 residues, 2 models selected > color (#!3 & sel) red > ui tool show "Surface Zone" > surface zone #1 nearAtoms sel distance 5.1 > select ~sel 92490 atoms, 98870 bonds, 27 pseudobonds, 7464 residues, 4 models selected > hide sel atoms > volume sel style mesh > surface zone #1 nearAtoms sel distance 3.53 > surface zone #1 nearAtoms sel distance 3.55 > surface zone #1 nearAtoms sel distance 2.89 > select ~sel 2156 atoms, 2177 bonds, 1 pseudobond, 131 residues, 2 models selected > surface zone #1 nearAtoms sel distance 2.89 > show sel cartoons > hide sel cartoons > show sel cartoons > hide sel atoms > set bgColor white > surface zone #1 nearAtoms sel distance 1 > surface zone #1 nearAtoms sel distance 1.5 No model chosen to save relative to > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/complexmodeler.pdb relModel > #1 > select add #1 2156 atoms, 2177 bonds, 1 pseudobond, 131 residues, 4 models selected > show sel atoms > select add #3 94646 atoms, 101047 bonds, 28 pseudobonds, 7595 residues, 4 models selected > show sel atoms > show sel cartoons > hide sel atoms > select clear > open > /yonath_group/disha/DBA/hES_D12/RPS19_4ug0_hek_real_space_refined_027-coot-8.cif Summary of feedback from opening /yonath_group/disha/DBA/hES_D12/RPS19_4ug0_hek_real_space_refined_027-coot-8.cif --- warnings | Unknown polymer entity '1' near line 52 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. Chain information for RPS19_4ug0_hek_real_space_refined_027-coot-8.cif #2 --- Chain | Description ST | No description available > ui tool show Matchmaker > matchmaker #2 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ComplexModeler(2).cif, chain G (#3) with RPS19_4ug0_hek_real_space_refined_027-coot-8.cif, chain ST (#2), sequence alignment score = 701.9 RMSD between 133 pruned atom pairs is 1.014 angstroms; (across all 141 pairs: 1.135) > hide #!3 models > select add #2 1094 atoms, 1113 bonds, 141 residues, 1 model selected > surface zone #1 nearAtoms sel distance 1.5 > surface zone #1 nearAtoms sel distance 1.82 > show #!3 models > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/RPS19.pdb models #2 relModel > #3 > open 7R4X 7r4x title: Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map [more info...] Chain information for 7r4x #4 --- Chain | Description | UniProt 2 | 18S ribosomal RNA | A | 40S ribosomal protein SA | RSSA_HUMAN 1-295 B | 40S ribosomal protein S3a | RS3A_HUMAN 1-264 C | 40S ribosomal protein S2 | RS2_HUMAN 1-293 D | 40S ribosomal protein S3 | RS3_HUMAN 1-243 E | 40S ribosomal protein S4, X isoform | RS4X_HUMAN 1-263 F | 40S ribosomal protein S5 | RS5_HUMAN 1-204 G | 40S ribosomal protein S6 | RS6_HUMAN 1-249 H | 40S ribosomal protein S7 | RS7_HUMAN 1-194 I | 40S ribosomal protein S8 | RS8_HUMAN 1-208 J | 40S ribosomal protein S9 | RS9_HUMAN 1-194 K | 40S ribosomal protein S10 | RS10_HUMAN 1-165 L | 40S ribosomal protein S11 | RS11_HUMAN 1-158 M | 40S ribosomal protein S12 | RS12_HUMAN 1-132 N | 40S ribosomal protein S13 | RS13_HUMAN 1-151 O | 40S ribosomal protein S14 | RS14_HUMAN 1-151 P | 40S ribosomal protein S15 | RS15_HUMAN 1-145 Q | 40S ribosomal protein S16 | RS16_HUMAN 1-146 R | 40S ribosomal protein S17 | RS17_HUMAN 1-135 S | 40S ribosomal protein S18 | RS18_HUMAN 1-152 T | 40S ribosomal protein S19 | RS19_HUMAN 1-145 U | 40S ribosomal protein S20 | RS20_HUMAN 1-119 V | 40S ribosomal protein S21 | RS21_HUMAN 1-83 W | 40S ribosomal protein S15a | RS15A_HUMAN 1-130 X | 40S ribosomal protein S23 | A0A4W2DI10_BOBOX 1-143 Y | 40S ribosomal protein S24 | RS24_HUMAN 1-133 Z | 40S ribosomal protein S25 | RS25_HUMAN 1-125 a | 40S ribosomal protein S26 | RS26_HUMAN 1-115 b | 40S ribosomal protein S27 | RS27_HUMAN 1-84 c | 40S ribosomal protein S28 | RS28_HUMAN 1-69 d | 40S ribosomal protein S29 | RS29_HUMAN 1-56 e | 40S ribosomal protein S30 | RS30_HUMAN 1-59 f | Ubiquitin-40S ribosomal protein S27a | RS27A_HUMAN 1-156 g | Receptor of activated protein C kinase 1 | RACK1_HUMAN 1-317 n | 60S ribosomal protein L41 | RL41_HUMAN 1-25 Non-standard residues in 7r4x #4 --- B8N — (2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic acid K — potassium ion MG — magnesium ion ZN — zinc ion > ui tool show Matchmaker > matchmaker #!4 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ComplexModeler(2).cif, chain b (#3) with 7r4x, chain 2 (#4), sequence alignment score = 5633.1 RMSD between 3 pruned atom pairs is 1.321 angstroms; (across all 1572 pairs: 81.916) > select add #4 78858 atoms, 79390 bonds, 2388 pseudobonds, 10870 residues, 5 models selected > show sel cartoons > hide sel atoms > color #4 #aa00ffff > color #4 #00aaffff > color #3 #ff5500ff > ui tool show Matchmaker > matchmaker #!4 to #3/G pairing bs Specify a single 'to' chain only > matchmaker #!4 to #3/G pairing bs Specify a single 'to' chain only > matchmaker #2/ST to #3/G pairing ss Different number of reference/match chains (2 ref, 1 match) > matchmaker #2/ST to #3/G pairing ss Different number of reference/match chains (2 ref, 1 match) > matchmaker #4/T to #2/ST pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker RPS19_4ug0_hek_real_space_refined_027-coot-8.cif, chain ST (#2) with 7r4x, chain T (#4), sequence alignment score = 707.9 RMSD between 141 pruned atom pairs is 0.558 angstroms; (across all 141 pairs: 0.558) > select subtract #2 77764 atoms, 78277 bonds, 2388 pseudobonds, 10729 residues, 4 models selected > ui mousemode right "rotate selected models" > view matrix models > #4,0.4057,0.00049036,0.91401,-62.482,0.90301,0.15441,-0.4009,187.19,-0.14133,0.98801,0.062202,85.475 > view matrix models > #4,0.42601,0.028151,0.90428,-70.427,0.73333,0.57463,-0.36337,124.96,-0.52985,0.81793,0.22415,166.54 > view matrix models > #4,0.42095,0.10302,0.90121,-84.591,-0.078397,0.99394,-0.077007,141.37,-0.90369,-0.038237,0.42648,381.28 > view matrix models > #4,0.83122,-0.23978,0.50158,-9.2103,0.098223,0.95135,0.29202,32.872,-0.5472,-0.19347,0.81434,255.28 > ui mousemode right "translate selected models" > view matrix models > #4,0.83122,-0.23978,0.50158,-9.2646,0.098223,0.95135,0.29202,-21.252,-0.5472,-0.19347,0.81434,226.24 > surface zone #1 nearAtoms sel distance 1.82 [Repeated 1 time(s)] > fitmap #4 inMap #1 Fit molecule 7r4x (#4) to map cryosparc_P10_J38_005_volume_map_sharp(3).mrc (#1) using 77764 atoms average map value = 0.1165, steps = 216 shifted from previous position = 21.7 rotated from previous position = 6.99 degrees atoms outside contour = 57062, contour level = 0.17114 Position of 7r4x (#4) relative to cryosparc_P10_J38_005_volume_map_sharp(3).mrc (#1) coordinates: Matrix rotation and translation 0.81759725 -0.25174495 0.51784091 7.59082772 0.17152607 0.96501212 0.19831898 -33.31715110 -0.54964856 -0.07332183 0.83217208 194.36166118 Axis -0.23019739 0.90462583 0.35869384 Axis point 305.66024170 0.00000000 76.18983547 Rotation angle (degrees) 36.15822395 Shift along axis 37.82938701 > open > /yonath_group/disha/Downloads/cryosparc_P9_J58_class_00_00300_volume.mrc Opened cryosparc_P9_J58_class_00_00300_volume.mrc as #5, grid size 128,128,128, pixel 3.72, shown at level 0.939, step 1, values float32 > hide #2 models > hide #!3 models > hide #!4 models > hide #!5 models > show #!5 models > hide #!1 models > close session > open > /yonath_group/disha/Downloads/cryosparc_P10_J34_class_00_final_volume.mrc Opened cryosparc_P10_J34_class_00_final_volume.mrc as #1, grid size 70,70,70, pixel 6.8, shown at level 3.26, step 1, values float32 > volume #1 level 1.717 > ui tool show "Segment Map" Segmenting cryosparc_P10_J34_class_00_final_volume.mrc, density threshold 1.717037 Showing 1 region surfaces 201 watershed regions, grouped to 1 regions Showing cryosparc_P10_J34_class_00_final_volume.seg - 1 regions, 1 surfaces > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #!2 models > show #!2 models > hide #!2 models > hide #!1 models > show #!1 models > show #!2 models > hide #2.1 models > show #2.1 models > close #2 Segmenting cryosparc_P10_J34_class_00_final_volume.mrc, density threshold 1.717037 Showing 1 region surfaces 201 watershed regions, grouped to 1 regions Showing cryosparc_P10_J34_class_00_final_volume.seg - 1 regions, 1 surfaces > close #2 > open /yonath_group/disha/Downloads/ComplexModeler(2).cif Summary of feedback from opening /yonath_group/disha/Downloads/ComplexModeler(2).cif --- warnings | Missing entity information. Treating each chain as a separate entity. Atom H is not in the residue template for MET /O:1 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. Chain information for ComplexModeler(2).cif #2 --- Chain | Description 0 1 H L e f k l p | No description available 2 | No description available 4 | No description available 5 | No description available 6 | No description available 7 K V W | No description available A | No description available A | No description available B | No description available C | No description available C | No description available D | No description available D | No description available E | No description available F | No description available F N P | No description available G | No description available G | No description available H | No description available I | No description available I | No description available J | No description available K | No description available L | No description available M | No description available M Y | No description available N | No description available O | No description available O T | No description available P | No description available Q | No description available Q | No description available R | No description available R | No description available S | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available Z | No description available a | No description available a | No description available b | No description available b | No description available c | No description available c | No description available d | No description available e | No description available f | No description available g | No description available g r t z | No description available h | No description available h | No description available j | No description available > ui tool show "Fit in Map" > fitmap #2 inMap #1 Fit molecule ComplexModeler(2).cif (#2) to map cryosparc_P10_J34_class_00_final_volume.mrc (#1) using 94646 atoms average map value = 2.217, steps = 100 shifted from previous position = 7.56 rotated from previous position = 30.3 degrees atoms outside contour = 39266, contour level = 1.717 Position of ComplexModeler(2).cif (#2) relative to cryosparc_P10_J34_class_00_final_volume.mrc (#1) coordinates: Matrix rotation and translation 0.99688774 -0.07513782 0.02385686 15.12072683 0.07701868 0.86368981 -0.49810445 127.48162334 0.01682155 0.49839164 0.86678879 -93.80447331 Axis 0.98851854 0.00697899 0.15093839 Axis point 0.00000000 239.59768359 190.34221796 Rotation angle (degrees) 30.26732135 Shift along axis 1.67811593 > transparency 50 > select add #2 94646 atoms, 101047 bonds, 28 pseudobonds, 7595 residues, 2 models selected > view matrix models > #2,0.99689,-0.075138,0.023857,-61.221,0.077019,0.86369,-0.4981,-35.136,0.016822,0.49839,0.86679,-71.556 > ui mousemode right "rotate selected models" > view matrix models > #2,0.98923,-0.12615,-0.074299,-23.945,0.08507,0.90832,-0.40953,-68.69,0.11915,0.3988,0.90927,-80.434 > view matrix models > #2,-0.11804,-0.99299,0.0054464,433.84,0.88884,-0.1081,-0.44528,5.6593,0.44275,-0.04772,0.89537,-41.282 > view matrix models > #2,-0.12221,-0.99081,-0.057916,448.94,0.86227,-0.077096,-0.50054,16.914,0.49148,-0.11111,0.86377,-29.52 > view matrix models > #2,-0.12143,-0.99138,-0.049243,446.89,0.8661,-0.081587,-0.49317,15.437,0.4849,-0.10253,0.86854,-31.228 > view matrix models > #2,0.95694,-0.070738,-0.28152,17.714,-0.0026655,-0.97195,0.23516,273.13,-0.29026,-0.22428,-0.93029,597.14 > view matrix models > #2,0.90624,-0.027946,-0.42185,51.362,0.0015069,-0.99759,0.069323,316.95,-0.42277,-0.063459,-0.90401,581.85 > view matrix models > #2,0.84659,-0.039131,0.5308,-152.36,-0.3199,-0.83446,0.44871,263.6,0.42537,-0.54968,-0.71897,462.03 > view matrix models > #2,0.9777,-0.030048,0.20782,-110.59,-0.072916,-0.97671,0.20181,298.49,0.19692,-0.21247,-0.95712,486.28 > view matrix models > #2,0.78805,0.44284,-0.42763,-37.42,0.083198,-0.76489,-0.63877,403.48,-0.60996,0.46781,-0.63961,431.56 > view matrix models > #2,0.97443,-0.033077,0.22225,-112.4,-0.082046,-0.97319,0.21489,296.72,0.20918,-0.22763,-0.95101,485.79 > view matrix models > #2,0.95592,0.18442,-0.22849,-58.166,0.11418,-0.95038,-0.28939,361.77,-0.27052,0.25055,-0.92954,473.52 > view matrix models > #2,0.83792,0.53141,-0.12442,-141.44,0.54239,-0.83617,0.081439,147.07,-0.060761,-0.13573,-0.98888,534.78 > view matrix models > #2,0.77373,0.5897,-0.23149,-116.21,0.63084,-0.75071,0.19614,78.424,-0.05812,-0.2978,-0.95286,566.38 > view matrix models > #2,0.76428,0.33055,0.55374,-230.89,-0.27422,-0.61058,0.74296,128.78,0.58368,-0.71968,-0.37601,388.11 > view matrix models > #2,0.9126,0.25658,-0.31833,-45.282,0.28453,-0.95767,0.043794,246.58,-0.29362,-0.13054,-0.94697,578.32 > ui mousemode right "translate selected models" > view matrix models > #2,0.9126,0.25658,-0.31833,63.149,0.28453,-0.95767,0.043794,376.41,-0.29362,-0.13054,-0.94697,554.28 > fitmap #2 inMap #1 Fit molecule ComplexModeler(2).cif (#2) to map cryosparc_P10_J34_class_00_final_volume.mrc (#1) using 94646 atoms average map value = 2.113, steps = 92 shifted from previous position = 14.6 rotated from previous position = 19.8 degrees atoms outside contour = 41258, contour level = 1.717 Position of ComplexModeler(2).cif (#2) relative to cryosparc_P10_J34_class_00_final_volume.mrc (#1) coordinates: Matrix rotation and translation 0.81765880 0.53891198 -0.20250424 -20.88565964 0.56384483 -0.82066489 0.09267234 277.32885084 -0.11624588 -0.18995533 -0.97488660 531.50009056 Axis -0.95305966 -0.29087514 0.08407701 Axis point 0.00000000 162.69159555 254.16526044 Rotation angle (degrees) 171.47309266 Shift along axis -16.07585225 Segmenting cryosparc_P10_J34_class_00_final_volume.mrc, density threshold 1.717037 Showing 1 region surfaces 201 watershed regions, grouped to 1 regions Showing cryosparc_P10_J34_class_00_final_volume.seg - 1 regions, 1 surfaces > hide #!2 models Ungrouped to 4 regions > close #3 Segmenting cryosparc_P10_J34_class_00_final_volume.mrc, density threshold 1.717037 Showing 1 region surfaces 201 watershed regions, grouped to 1 regions Showing cryosparc_P10_J34_class_00_final_volume.seg - 1 regions, 1 surfaces cryosparc_P10_J34_class_00_final_volume.seg has 1 regions Ungrouped to 4 regions > hide #3.3 models > show #3.3 models > hide #3.5 models > show #3.5 models Segmenting cryosparc_P10_J34_class_00_final_volume.mrc, density threshold 1.717037 Showing 1 region surfaces 201 watershed regions, grouped to 1 regions Showing cryosparc_P10_J34_class_00_final_volume.seg - 1 regions, 1 surfaces Ungrouped to 4 regions > hide #3.5 models > show #3.5 models > hide #3.4 models > show #3.4 models > hide #3.3 models > show #3.3 models > hide #3.2 models > show #3.2 models > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment1.mrc > models #1 > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment2.mrc > models #1 > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment3.mrc > models #1 > save /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment4.mrc > models #1 > open /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment4.mrc > /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment3.mrc > /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment2.mrc > /yonath_group/disha/DBA/Leu2pro/40s_mutant/segment_map/Segment1.mrc Opened Segment4.mrc as #4.1, grid size 70,70,70, pixel 6.8, shown at level 3.26, step 1, values float32 Opened Segment3.mrc as #4.2, grid size 70,70,70, pixel 6.8, shown at level 3.26, step 1, values float32 Opened Segment2.mrc as #4.3, grid size 70,70,70, pixel 6.8, shown at level 3.26, step 1, values float32 Opened Segment1.mrc as #4.4, grid size 70,70,70, pixel 6.8, shown at level 3.26, step 1, values float32 > hide #!3 models > hide #!4.1 models > show #!4.1 models > hide #!4.1 models > show #!4.1 models > hide #!4.1 models > show #!4.1 models > hide #!4.2 models > show #!4.2 models > hide #!4.4 models > show #!4.4 models > hide #!4.4 models > show #!4.4 models > hide #!4.4 models > hide #!4.3 models > hide #!4.2 models > hide #!1 models > volume #4.1 level 1.965 > close #4 > view matrix models > #2,0.81766,0.53891,-0.2025,-21.11,0.56384,-0.82066,0.092672,274.85,-0.11625,-0.18996,-0.97489,529.25 > view > hide #2.1 models > show #!3 models > hide #!3 models > show #!3 models > help help:user > volume subtract #0 #3.2 volume subtract operation requires exactly two volumes > volume subtract #0 #3.2 volume subtract operation requires exactly two volumes > volume subtract #0 3.2 Expected a keyword > segger exportmask Missing or invalid "segmentation" argument: empty atom specifier Must specify one segmentation, got 0 > segger exportmask #3 savePath /yonath_group/disha/DBA/Leu2pro/40s_mutant/ > format mrc Traceback (most recent call last): File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/cmd_line/tool.py", line 319, in execute cmd.run(cmd_text) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/core/commands/cli.py", line 2897, in run result = ci.function(session, **kw_args) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/segger/segcmd.py", line 358, in export_mask save_grid_data(g, save_path, session, format=format) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/fileformats.py", line 314, in save_grid_data ff.save_func(garg, tpath, options = options, progress = p) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/mrc/writemrc.py", line 61, in write_mrc2000_grid_data f = open(path, 'wb') IsADirectoryError: [Errno 21] Is a directory: '/yonath_group/disha/DBA/Leu2pro/40s_mutant/' IsADirectoryError: [Errno 21] Is a directory: '/yonath_group/disha/DBA/Leu2pro/40s_mutant/' File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/mrc/writemrc.py", line 61, in write_mrc2000_grid_data f = open(path, 'wb') See log for complete Python traceback. > segger exportmask #3 savePath /yonath_group/disha/DBA/Leu2pro/40s_mutant > format mrc Traceback (most recent call last): File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/cmd_line/tool.py", line 319, in execute cmd.run(cmd_text) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/core/commands/cli.py", line 2897, in run result = ci.function(session, **kw_args) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/segger/segcmd.py", line 358, in export_mask save_grid_data(g, save_path, session, format=format) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/fileformats.py", line 314, in save_grid_data ff.save_func(garg, tpath, options = options, progress = p) File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/mrc/writemrc.py", line 61, in write_mrc2000_grid_data f = open(path, 'wb') IsADirectoryError: [Errno 21] Is a directory: '/yonath_group/disha/DBA/Leu2pro/40s_mutant' IsADirectoryError: [Errno 21] Is a directory: '/yonath_group/disha/DBA/Leu2pro/40s_mutant' File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site- packages/chimerax/map_data/mrc/writemrc.py", line 61, in write_mrc2000_grid_data f = open(path, 'wb') See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 418.113 OpenGL renderer: Quadro RTX 4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: en_US.UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION=plasma XDG_SESSION_DESKTOP=plasma XDG_CURRENT_DESKTOP=KDE DISPLAY=:1 Manufacturer: ASUS Model: System Product Name OS: CentOS Stream 8 Architecture: 64bit ELF Virtual Machine: none CPU: 24 AMD Ryzen 9 5900X 12-Core Processor Cache Size: 512 KB Memory: total used free shared buff/cache available Mem: 62Gi 15Gi 43Gi 235Mi 2.8Gi 45Gi Swap: 31Gi 4.8Gi 26Gi Graphics: 05:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU104GL [Quadro RTX 4000] [10de:1eb1] (rev a1) Subsystem: NVIDIA Corporation Device [10de:12a0] Kernel driver in use: nvidia Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2023.5.7 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-LinuxSupport: 1.0.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 distro: 1.7.0 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 23.1 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0
Change History (2)
comment:1 by , 22 months ago
Component: | Unassigned → Volume Data |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → segger savePath arg allows folder |
comment:2 by , 22 months ago
Resolution: | → duplicate |
---|---|
Status: | assigned → closed |
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