Qt fatal error: Failed to initialize graphics backend for OpenGL

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-6.2.0-39-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.7rc202311302110 (2023-11-30 21:10:26 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Qt fatal error: Failed to initialize graphics backend for OpenGL.
Fatal Python error: Aborted

Current thread 0x00007fc3b1669b80 (most recent call first):
  File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py", line 859 in rapid_access_shown
  File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py", line 198 in build
  File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/core/__main__.py", line 722 in init
  File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, lxml._elementpath, lxml.etree, chimerax.pdb_lib._load_libs (total: 46)
===== Log before crash start =====
UCSF ChimeraX version: 1.7rc202311302110 (2023-11-30)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/milad/Documents/HIV/For_model_angelo/Job335_map-sharp-
> Zflipped.mrc

Opened Job335_map-sharp-Zflipped.mrc as #1, grid size 480,480,480, pixel
0.833, shown at level 0.0661, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.1076

> volume #1 level 0.1318

> open 6VPX fromDatabase pdb format mmcif

Summary of feedback from opening 6VPX fetched from pdb  
---  
notes | Fetching compressed mmCIF 6vpx from
http://files.rcsb.org/download/6vpx.cif  
Fetching CCD FUC from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/FUC/FUC.cif  
Fetching CCD GAL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/GAL/GAL.cif  
Fetching CCD 44E from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/44E/44E.cif  
  
6vpx title:  
Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex
with one PGT151 Fab and three 10E8 Fabs [more info...]  
  
Chain information for 6vpx #2  
---  
Chain | Description  
A C E | Envelope glycoprotein gp120  
B D F | Envelope glycoprotein gp41  
G I J | MPER peptide  
H K M | Antibody 10E8 Fab heavy chain  
L N O | Antibody 10E8 Fab light chain  
P | Antibody PGT151 Fab heavy chain  
Q | Antibody PGT151 Fab light chain  
  
Non-standard residues in 6vpx #2  
---  
44E — (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate  
BMA — beta-D-mannopyranose  
FUC — alpha-L-fucopyranose  
GAL — beta-D-galactopyranose  
MAN — alpha-D-mannopyranose  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose  
  

> hide cartoons

> hide atoms

> show cartoons

> select /I:127

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

136 atoms, 142 bonds, 15 residues, 1 model selected  

> select up

153 atoms, 159 bonds, 17 residues, 1 model selected  

> select up

22592 atoms, 23203 bonds, 2798 residues, 1 model selected  

> select up

22592 atoms, 23203 bonds, 2798 residues, 3 models selected  

> select down

22592 atoms, 23203 bonds, 2798 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,98.491,0,1,0,41.431,0,0,1,46.587

> view matrix models #2,1,0,0,131.43,0,1,0,58.376,0,0,1,68.873

> view matrix models #2,1,0,0,130.1,0,1,0,56.828,0,0,1,63.094

> view matrix models #2,1,0,0,157.31,0,1,0,60.974,0,0,1,25.695

> view matrix models #2,1,0,0,162.64,0,1,0,59.5,0,0,1,5.4244

> view matrix models
> #2,0.99544,-0.01833,-0.09363,183.02,0.014835,0.99917,-0.037883,63.383,0.094247,0.036321,0.99489,-18.172

> view matrix models
> #2,0.93091,-0.22483,-0.28785,267.03,0.20469,-0.33159,0.92095,110.72,-0.3025,-0.91624,-0.26266,450.19

> view matrix models
> #2,0.91652,0.31304,-0.24898,162.83,0.29926,-0.12364,0.94613,49.873,0.2654,-0.94166,-0.207,338.65

> view matrix models
> #2,0.28015,0.74881,-0.60067,261.7,0.94948,-0.12395,0.28831,40.92,0.14143,-0.6511,-0.7457,400.47

> view matrix models
> #2,0.26769,-0.062484,-0.96148,477.27,0.83461,-0.48356,0.2638,133.72,-0.48141,-0.87308,-0.077294,443.88

> view matrix models
> #2,0.71112,0.13699,-0.6896,310.02,-0.54649,0.72478,-0.41957,285.64,0.44233,0.67522,0.59027,-133.01

> view matrix models
> #2,0.90178,0.12762,-0.41293,228.35,-0.4275,0.40386,-0.80879,390.03,0.063554,0.90587,0.41875,-75.313

> view matrix models
> #2,0.78165,0.020407,0.62339,92.623,0.59932,0.25223,-0.75973,216.91,-0.17274,0.96745,0.18493,-2.1639

> view matrix models
> #2,0.78165,0.020407,0.62339,-74.94,0.59932,0.25223,-0.75973,155.73,-0.17274,0.96745,0.18493,26.145

> view matrix models
> #2,0.78165,0.020407,0.62339,-62.67,0.59932,0.25223,-0.75973,161.55,-0.17274,0.96745,0.18493,31.688

> view matrix models
> #2,0.78511,-0.10226,0.61086,-38.069,0.56581,0.51957,-0.64024,97.189,-0.25191,0.84829,0.46578,18.254

> view matrix models
> #2,0.74284,0.068126,0.66599,-71.359,0.40255,0.74942,-0.52567,65.328,-0.53492,0.65859,0.52927,95.853

> view matrix models
> #2,0.44838,0.14323,0.88229,-67.235,0.88048,0.099273,-0.46358,85.986,-0.15399,0.9847,-0.0816,68.602

> view matrix models
> #2,0.53663,-0.54669,0.64278,85.936,0.79833,0.082186,-0.59659,127.49,0.27332,0.83329,0.48054,-80.179

> view matrix models
> #2,0.57558,-0.095114,0.81219,-34.667,0.61177,0.70915,-0.3505,3.3881,-0.54263,0.69862,0.46636,100.67

> view matrix models
> #2,0.078176,0.28854,0.95427,-37.132,0.98989,0.091177,-0.10866,5.8818,-0.11836,0.95312,-0.27849,101.66

> view matrix models
> #2,0.20979,-0.63729,0.74152,147.24,0.93575,-0.08901,-0.34124,89.637,0.28347,0.76546,0.57767,-86.158

> view matrix models
> #2,0.23571,-0.53751,0.80964,112.06,0.9559,-0.021986,-0.29288,65.044,0.17523,0.84297,0.50862,-68.382

> view matrix models
> #2,0.27968,-0.38518,0.87944,63.41,0.9549,0.2067,-0.21315,8.9041,-0.099681,0.89939,0.42562,-12.963

> view matrix models
> #2,0.27968,-0.38518,0.87944,178.77,0.9549,0.2067,-0.21315,-34.826,-0.099681,0.89939,0.42562,11.315

> view matrix models
> #2,0.27968,-0.38518,0.87944,183.6,0.9549,0.2067,-0.21315,-59.049,-0.099681,0.89939,0.42562,13.631

> close #2

> open 6VO3 fromDatabase pdb format mmcif

Summary of feedback from opening 6VO3 fetched from pdb  
---  
note | Fetching compressed mmCIF 6vo3 from
http://files.rcsb.org/download/6vo3.cif  
  
6vo3 title:  
AMC009 SOSIP.v4.2 in complex with PGV04 Fab [more info...]  
  
Chain information for 6vo3 #2  
---  
Chain | Description  
A C D | AMC009 SOSIP.v4.2 envelope glycoprotein gp120  
B E F | AMC009 SOSIP.v4.2 envelope glycoprotein gp41  
G H I | PGV04 heavy chain  
J K L | PGV04 light chain  
  
Non-standard residues in 6vo3 #2  
---  
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)  
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> select /I:108@CD2

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

37 atoms, 36 bonds, 5 residues, 1 model selected  

> select up

994 atoms, 1021 bonds, 125 residues, 1 model selected  

> select up

19554 atoms, 20073 bonds, 2412 residues, 1 model selected  

> select up

19554 atoms, 20073 bonds, 2412 residues, 3 models selected  

> select down

19554 atoms, 20073 bonds, 2412 residues, 1 model selected  

> view matrix models #2,1,0,0,248.01,0,1,0,53.144,0,0,1,22.778

> view matrix models #2,1,0,0,228.56,0,1,0,58.71,0,0,1,33.482

> view matrix models #2,1,0,0,228.14,0,1,0,61.239,0,0,1,37.274

> view matrix models
> #2,0.9199,0.21503,0.32795,154.35,-0.22452,0.97443,-0.0091503,103.16,-0.32153,-0.065213,0.94465,108.63

> view matrix models
> #2,-0.083987,0.49264,0.86617,186.62,-0.62099,0.65394,-0.43214,286.2,-0.77931,-0.57418,0.251,374.97

> view matrix models
> #2,-0.25426,0.46547,0.84775,221.49,-0.61398,0.59958,-0.51335,306.73,-0.74725,-0.65103,0.13335,400.86

> view matrix models
> #2,0.14548,0.06044,0.98751,204.26,-0.24825,0.96843,-0.022699,110.08,-0.95771,-0.24185,0.15589,362

> view matrix models
> #2,-0.1714,0.16625,0.97107,239.93,-0.2689,0.94034,-0.20845,146.64,-0.94779,-0.29685,-0.11647,411.47

> hide sel cartoons

> show sel cartoons

> hide sel atoms

> view matrix models
> #2,0.3322,-0.012146,0.94313,193.34,-0.20679,0.97465,0.085391,85.396,-0.92026,-0.2234,0.32127,326.92

> view matrix models
> #2,0.29784,0.0018383,0.95461,194.73,-0.21622,0.97414,0.065585,90.063,-0.92981,-0.22594,0.29054,333.64

> view matrix models
> #2,-0.15219,0.16043,0.97524,237.17,-0.26937,0.94265,-0.19711,144.57,-0.95094,-0.29269,-0.10024,408.76

> view matrix models
> #2,-0.10565,0.14602,0.98362,230.82,-0.26957,0.94792,-0.16968,139.47,-0.95717,-0.28308,-0.060785,402.04

> view matrix models
> #2,-0.10565,0.14602,0.98362,186.72,-0.26957,0.94792,-0.16968,120.65,-0.95717,-0.28308,-0.060785,379.85

> view matrix models
> #2,-0.2053,0.51366,0.83307,163.45,-0.24564,0.79691,-0.5519,201.52,-0.94737,-0.31794,-0.037434,380.6

> view matrix models
> #2,0.10289,0.67077,0.73449,102.18,-0.18951,0.7381,-0.64753,217.24,-0.97647,-0.072571,0.20306,306.37

> view matrix models
> #2,0.10289,0.67077,0.73449,-39.479,-0.18951,0.7381,-0.64753,214.78,-0.97647,-0.072571,0.20306,321.04

> view matrix models
> #2,0.041303,0.63265,0.77334,-29.046,0.070528,0.77022,-0.63386,165.23,-0.99665,0.080723,-0.012807,331.53

> view matrix models
> #2,0.041303,0.63265,0.77334,-42.983,0.070528,0.77022,-0.63386,161.36,-0.99665,0.080723,-0.012807,362.94

> view matrix models
> #2,0.23785,0.62432,0.74408,-68.771,-0.094185,0.77728,-0.62207,184.92,-0.96672,0.077881,0.24368,318.98

> view matrix models
> #2,0.15412,-0.37085,0.91582,87.687,-0.078715,0.91933,0.38552,2.6397,-0.98491,-0.1315,0.1125,377.83

> view matrix models
> #2,0.1297,-0.65224,0.74683,165.64,-0.092799,0.7419,0.66405,-7.8853,-0.9872,-0.15543,0.035698,394.14

> view matrix models
> #2,0.046596,-0.66165,0.74837,180.42,-0.039324,0.74738,0.66323,-17.322,-0.99814,-0.060332,0.0088065,383.86

> view matrix models
> #2,0.046596,-0.66165,0.74837,316.15,-0.039324,0.74738,0.66323,-15.756,-0.99814,-0.060332,0.0088065,450.26

> close #2

> open 7LXM fromDatabase pdb format mmcif

Summary of feedback from opening 7LXM fetched from pdb  
---  
note | Fetching compressed mmCIF 7lxm from
http://files.rcsb.org/download/7lxm.cif  
  
7lxm title:  
Cryo-EM structure of ConM SOSIP.v7 (ConM) in complex with bNAb PGT122 [more
info...]  
  
Chain information for 7lxm #2  
---  
Chain | Description  
A C E | HIV-1 Env glycoprotein gp120  
B D F | HIV-1 Env glycoprotein gp41  
H N P | PGT122 Fab heavy chain  
L M O | PGT122 Fab light chain  
  
Non-standard residues in 7lxm #2  
---  
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)  
MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> hide atoms

> show atoms

> hide cartoons

> show cartoons

> hide atoms

> select clear

> select /E:260

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

24 atoms, 23 bonds, 3 residues, 1 model selected  

> select up

3132 atoms, 3206 bonds, 394 residues, 1 model selected  

> select up

3148 atoms, 3221 bonds, 396 residues, 1 model selected  

> select up

3478 atoms, 3559 bonds, 436 residues, 1 model selected  

> select up

20820 atoms, 21432 bonds, 2532 residues, 1 model selected  

> select up

20820 atoms, 21432 bonds, 2532 residues, 3 models selected  

> select down

20820 atoms, 21432 bonds, 2532 residues, 1 model selected  

> view matrix models #2,1,0,0,193.1,0,1,0,110.65,0,0,1,161.39

> view matrix models
> #2,-0.057883,0.99802,-0.02453,212.88,0.88158,0.039568,-0.47037,158.85,-0.46847,-0.048852,-0.88213,416.77

> view matrix models
> #2,-0.057883,0.99802,-0.02453,90.675,0.88158,0.039568,-0.47037,155.8,-0.46847,-0.048852,-0.88213,370.62

> view matrix models
> #2,-0.23904,0.96756,0.081806,105.26,0.96101,0.24779,-0.12269,87.202,-0.13898,0.049288,-0.98907,330.44

> view matrix models
> #2,-0.84121,0.41295,-0.34906,284.84,0.5243,0.78077,-0.33985,103.04,0.1322,-0.4689,-0.8733,343.51

> view matrix models
> #2,-0.88485,-0.37447,-0.27716,370.67,-0.27357,0.89919,-0.34149,188.05,0.3771,-0.22634,-0.89809,290.27

> view matrix models
> #2,-0.88485,-0.37447,-0.27716,376,-0.27357,0.89919,-0.34149,176.03,0.3771,-0.22634,-0.89809,275.77

> view matrix models
> #2,-0.63747,0.74784,-0.18537,210.9,0.75378,0.55553,-0.35101,90.255,-0.15952,-0.36349,-0.91784,358.53

> view matrix models
> #2,-0.63747,0.74784,-0.18537,201.84,0.75378,0.55553,-0.35101,94.197,-0.15952,-0.36349,-0.91784,359.1

> view matrix models
> #2,-0.84418,-0.33323,-0.41989,372,-0.21912,0.92939,-0.29703,165.4,0.48922,-0.15874,-0.85759,250.96

> view matrix models
> #2,-0.84418,-0.33323,-0.41989,387.03,-0.21912,0.92939,-0.29703,157.62,0.48922,-0.15874,-0.85759,249.75

> view matrix models
> #2,-0.76255,-0.4614,-0.45347,394.86,-0.33661,0.88157,-0.33096,180.76,0.55247,-0.099732,-0.82755,232.36

> view matrix models
> #2,-0.76255,-0.4614,-0.45347,360.77,-0.33661,0.88157,-0.33096,190.59,0.55247,-0.099732,-0.82755,221.62

> view matrix models
> #2,-0.74215,-0.52968,-0.41067,361.53,-0.48068,0.84764,-0.22461,201.04,0.46707,0.030706,-0.88369,223.18

> view matrix models
> #2,-0.77091,-0.50649,-0.38622,359.94,-0.46899,0.86166,-0.19386,194.9,0.43098,0.031687,-0.90181,229.33

> view matrix models
> #2,-0.89245,-0.12413,-0.43374,336.84,0.086237,0.89674,-0.43407,147.93,0.44283,-0.42479,-0.78959,267.45

> view matrix models
> #2,-0.89245,-0.12413,-0.43374,240.92,0.086237,0.89674,-0.43407,229,0.44283,-0.42479,-0.78959,305.04

> view matrix models
> #2,-0.89245,-0.12413,-0.43374,262.35,0.086237,0.89674,-0.43407,172.72,0.44283,-0.42479,-0.78959,292.58

> view matrix models
> #2,-0.89245,-0.12413,-0.43374,243.36,0.086237,0.89674,-0.43407,162.08,0.44283,-0.42479,-0.78959,281.32

> view matrix models
> #2,-0.66136,0.53789,-0.52276,150.26,0.71368,0.66572,-0.21791,89.321,0.2308,-0.5172,-0.82416,321.04

> view matrix models
> #2,0.016919,0.99873,-0.047514,-32.643,0.97645,-0.026727,-0.21408,134.37,-0.21508,-0.042773,-0.97566,337.82

> view matrix models
> #2,0.68364,0.55001,-0.4797,-19.416,0.72072,-0.61225,0.32514,175.79,-0.11487,-0.56801,-0.81497,367.91

> view matrix models
> #2,-0.39094,-0.68115,-0.61903,263.31,0.91514,-0.21577,-0.34053,176.04,0.098382,-0.69963,0.7077,200.61

> close #2

> open 6UDJ fromDatabase pdb format mmcif

Summary of feedback from opening 6UDJ fetched from pdb  
---  
note | Fetching compressed mmCIF 6udj from
http://files.rcsb.org/download/6udj.cif  
  
6udj title:  
HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074 [more info...]  
  
Chain information for 6udj #2  
---  
Chain | Description | UniProt  
A K Q | 10-1074 Fab Heavy Chain | S6B2B6_HUMAN 109-219  
B L R | 10-1074 Fab Light Chain | Q8N355_HUMAN 104-213  
C F M | Envelope glycoprotein gp41 | Q2N0S6_9HIV1 512-664  
D H N | 1-18 Fab Heavy Chain |  
E I O | 1-18 Fab Light Chain | Q6PIL8_HUMAN 107-214  
G J P | Envelope glycoprotein gp120 | Q2N0S6_9HIV1 33-508  
  
Non-standard residues in 6udj #2  
---  
BMA — beta-D-mannopyranose  
MAN — alpha-D-mannopyranose  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose  
  

> hide atoms

> show cartoons

> select /L:83

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

51 atoms, 50 bonds, 8 residues, 1 model selected  

> select up

824 atoms, 846 bonds, 107 residues, 1 model selected  

> select up

26592 atoms, 27321 bonds, 3312 residues, 1 model selected  

> select up

26592 atoms, 27321 bonds, 3312 residues, 3 models selected  

> select down

26592 atoms, 27321 bonds, 3312 residues, 1 model selected  

> view matrix models #2,1,0,0,-63.01,0,1,0,-11.199,0,0,1,-9.4002

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.56689,-0.81937,0.085213,108.88,-0.64305,-0.37549,0.66746,184.3,-0.5149,-0.43317,-0.73976,398.16

> view matrix models
> #2,0.53674,-0.63122,-0.55989,184.77,-0.82328,-0.24655,-0.51129,373.19,0.1847,0.73538,-0.652,108.7

> view matrix models
> #2,0.53674,-0.63122,-0.55989,310.79,-0.82328,-0.24655,-0.51129,451.33,0.1847,0.73538,-0.652,154.66

> view matrix models
> #2,0.57506,-0.60119,-0.55486,299.91,-0.7861,-0.21817,-0.57832,451.93,0.22662,0.76874,-0.59806,135.24

> view matrix models
> #2,0.57506,-0.60119,-0.55486,165.99,-0.7861,-0.21817,-0.57832,397.86,0.22662,0.76874,-0.59806,191.59

> view matrix models
> #2,0.63935,-0.69333,-0.33246,135.83,-0.76853,-0.5624,-0.30508,403.95,0.024545,0.45055,-0.89241,313.68

> view matrix models
> #2,0.80671,-0.56624,-0.16913,67.163,-0.58999,-0.78802,-0.17589,390.8,-0.033678,0.24168,-0.96977,364.97

> view matrix models
> #2,0.82004,-0.54151,-0.1852,64.012,-0.56437,-0.71144,-0.41874,413.03,0.094991,0.44791,-0.88902,303.08

> view matrix models
> #2,0.70234,-0.57227,-0.42336,248.93,-0.66917,-0.7336,-0.1185,436.53,-0.24276,0.36653,-0.89818,313.61

> view matrix models
> #2,0.79125,-0.35656,-0.49678,215.24,-0.49627,-0.84909,-0.18101,437.45,-0.35727,0.38976,-0.84879,319.61

> view matrix models
> #2,0.73592,-0.50708,-0.44865,238.23,-0.61711,-0.77498,-0.13633,437.63,-0.27856,0.37719,-0.88325,315.06

> view matrix models
> #2,0.73592,-0.50708,-0.44865,239.44,-0.61711,-0.77498,-0.13633,428.63,-0.27856,0.37719,-0.88325,322.46

> view matrix models
> #2,0.94454,0.29882,-0.13618,41.791,0.32837,-0.86422,0.38118,221.8,-0.0037849,-0.40475,-0.91442,401.55

> view matrix models
> #2,0.97548,0.2194,0.017453,25.285,0.16943,-0.7992,0.57669,205.8,0.14047,-0.55959,-0.81678,387.92

> view matrix models
> #2,0.97548,0.2194,0.017453,28.369,0.16943,-0.7992,0.57669,216.29,0.14047,-0.55959,-0.81678,385.75

> view matrix models
> #2,0.97548,0.2194,0.017453,65.014,0.16943,-0.7992,0.57669,275.71,0.14047,-0.55959,-0.81678,346.74

> view matrix models
> #2,0.98918,-0.046529,0.13911,83.439,-0.068335,-0.98533,0.15635,403.02,0.12979,-0.16417,-0.97786,314.86

> view matrix models
> #2,0.98918,-0.046529,0.13911,60.177,-0.068335,-0.98533,0.15635,361.49,0.12979,-0.16417,-0.97786,366.11

> view matrix models
> #2,0.99835,-0.056127,-0.012366,83.501,-0.042493,-0.86571,0.49874,287.44,-0.038698,-0.49739,-0.86666,423.12

> view matrix models
> #2,0.55265,-0.82405,-0.12461,280.02,-0.26804,-0.31732,0.90965,177.07,-0.78914,-0.46931,-0.39624,458.2

> view matrix models
> #2,0.55265,-0.82405,-0.12461,286.08,-0.26804,-0.31732,0.90965,156.91,-0.78914,-0.46931,-0.39624,438.44

> view matrix models
> #2,0.69264,-0.66725,-0.27389,266.81,-0.22395,-0.55991,0.79771,199.36,-0.68563,-0.49119,-0.53725,447.99

> view matrix models
> #2,0.69264,-0.66725,-0.27389,264.27,-0.22395,-0.55991,0.79771,206.34,-0.68563,-0.49119,-0.53725,447.34

> view matrix models
> #2,0.69264,-0.66725,-0.27389,253.88,-0.22395,-0.55991,0.79771,206.64,-0.68563,-0.49119,-0.53725,439.83

> volume #1 level 0.1318

> volume #1 level 0.1422

> view matrix models
> #2,0.69264,-0.66725,-0.27389,254.86,-0.22395,-0.55991,0.79771,203.34,-0.68563,-0.49119,-0.53725,432.25

> view matrix models
> #2,0.69264,-0.66725,-0.27389,255.42,-0.22395,-0.55991,0.79771,207.57,-0.68563,-0.49119,-0.53725,444.31

> view matrix models
> #2,0.69264,-0.66725,-0.27389,256.2,-0.22395,-0.55991,0.79771,209.02,-0.68563,-0.49119,-0.53725,446.33

> view matrix models
> #2,0.54652,-0.76589,-0.33871,302.39,-0.39681,-0.593,0.70064,254.49,-0.73747,-0.24851,-0.628,432.25

> view matrix models
> #2,0.54652,-0.76589,-0.33871,297.84,-0.39681,-0.593,0.70064,253.09,-0.73747,-0.24851,-0.628,443.87

> view matrix models
> #2,0.54652,-0.76589,-0.33871,332.95,-0.39681,-0.593,0.70064,296.25,-0.73747,-0.24851,-0.628,461.76

> close #2

> open
> /home/milad/Documents/HIV/Fab_cow_bd148_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb

Chain information for
Fab_cow_bd148_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb
#2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> select /B:139

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

74 atoms, 74 bonds, 10 residues, 1 model selected  

> select up

1577 atoms, 1610 bonds, 215 residues, 1 model selected  

> select up

3258 atoms, 3338 bonds, 425 residues, 1 model selected  

> view matrix models #2,1,0,0,-25.38,0,1,0,0.98534,0,0,1,21.599

> view matrix models #2,1,0,0,-13.248,0,1,0,12.91,0,0,1,35.311

> view matrix models #2,1,0,0,105.56,0,1,0,166.17,0,0,1,167.92

> view matrix models #2,1,0,0,106.27,0,1,0,206.05,0,0,1,187.47

> view matrix models #2,1,0,0,167.49,0,1,0,178.58,0,0,1,182.31

> view matrix models #2,1,0,0,96.424,0,1,0,258.83,0,0,1,183.91

> view matrix models
> #2,0.69221,0.56575,0.44807,93.086,-0.012756,0.63036,-0.7762,262.48,-0.72158,0.53158,0.44355,183.75

> view matrix models
> #2,0.69622,0.56109,0.44772,102.94,-0.015305,0.63518,-0.77222,248.62,-0.71766,0.53078,0.45081,178

> view matrix models
> #2,0.96572,-0.18931,0.17763,106.48,0.20477,0.13493,-0.96947,251.02,0.15956,0.9726,0.16907,176.79

> view matrix models
> #2,0.090296,-0.63852,-0.76429,111.25,0.93494,-0.21005,0.28595,248.45,-0.34312,-0.74038,0.57801,182.36

> view matrix models
> #2,0.15124,-0.81029,-0.56617,111.31,0.98243,0.059864,0.17676,247.71,-0.10933,-0.58296,0.80511,181.01

> view matrix models
> #2,0.089839,-0.63522,-0.76709,111.24,0.93361,-0.21452,0.28698,248.46,-0.34685,-0.74194,0.57377,182.38

> view matrix models
> #2,0.099954,-0.6894,-0.71745,111.3,0.95392,-0.13862,0.2661,248.23,-0.28291,-0.71099,0.64378,182.03

> view matrix models
> #2,0.099954,-0.6894,-0.71745,109.82,0.95392,-0.13862,0.2661,243.14,-0.28291,-0.71099,0.64378,168.4

> view matrix models
> #2,0.50479,-0.8626,-0.033189,108.36,0.80073,0.48225,-0.35534,242.61,0.32253,0.1528,0.93415,164.03

> view matrix models
> #2,0.084315,-0.52258,-0.84841,109.54,0.8823,-0.35654,0.30729,242.75,-0.46308,-0.77446,0.43101,166.96

> view matrix models
> #2,0.084315,-0.52258,-0.84841,101.8,0.8823,-0.35654,0.30729,263.7,-0.46308,-0.77446,0.43101,191.84

> view matrix models
> #2,0.68179,0.4037,-0.61007,97.34,0.083872,-0.87158,-0.48302,268.25,-0.72672,0.27815,-0.6281,190.96

> view matrix models
> #2,0.82608,0.3957,-0.40127,96.714,0.0032511,-0.71536,-0.69874,268.31,-0.56354,0.57591,-0.59223,189.65

> view matrix models
> #2,0.82608,0.3957,-0.40127,96.429,0.0032511,-0.71536,-0.69874,263.57,-0.56354,0.57591,-0.59223,179.43

> view matrix models
> #2,0.9805,0.19024,-0.049266,96.143,0.012319,-0.30971,-0.95075,262.74,-0.19612,0.9316,-0.30602,177.1

> view matrix models
> #2,0.9805,0.19024,-0.049266,125.8,0.012319,-0.30971,-0.95075,225.87,-0.19612,0.9316,-0.30602,169.6

> volume #1 level 0.1353

> view matrix models
> #2,0.90357,0.28888,-0.31641,126.22,-0.24589,-0.25511,-0.93512,225.71,-0.35085,0.92275,-0.15948,169.27

> view matrix models
> #2,0.92721,0.33653,-0.16441,125.59,-0.17748,0.0082221,-0.98409,224.82,-0.32982,0.94164,0.06735,168.54

> view matrix models
> #2,0.92897,0.33896,-0.14871,125.54,-0.1703,0.034696,-0.98478,224.72,-0.32864,0.94016,0.089958,168.48

> view matrix models
> #2,0.92897,0.33896,-0.14871,118.56,-0.1703,0.034696,-0.98478,216.86,-0.32864,0.94016,0.089958,159.96

> view matrix models
> #2,0.92897,0.33896,-0.14871,120.41,-0.1703,0.034696,-0.98478,218.74,-0.32864,0.94016,0.089958,162.46

> view matrix models
> #2,0.92897,0.33896,-0.14871,119.86,-0.1703,0.034696,-0.98478,269.77,-0.32864,0.94016,0.089958,155.44

> view matrix models
> #2,0.92897,0.33896,-0.14871,115.44,-0.1703,0.034696,-0.98478,260.13,-0.32864,0.94016,0.089958,151.78

> ui tool show "Color Actions"

> color sel bychain

> view matrix models
> #2,0.92897,0.33896,-0.14871,114.48,-0.1703,0.034696,-0.98478,243.94,-0.32864,0.94016,0.089958,152.76

> view matrix models
> #2,0.92897,0.33896,-0.14871,114.08,-0.1703,0.034696,-0.98478,250.86,-0.32864,0.94016,0.089958,154.56

> view matrix models
> #2,0.19573,0.11885,0.97343,111.97,0.60523,-0.79567,-0.024552,250.98,0.77161,0.59396,-0.22767,156.38

> view matrix models
> #2,-0.731,0.60192,0.32145,112.35,-0.66571,-0.73255,-0.14214,251.56,0.14992,-0.31789,0.9362,156.76

> view matrix models
> #2,-0.68489,0.71201,-0.15479,113.28,-0.72228,-0.63539,0.27311,250.01,0.096106,0.29886,0.94945,154.38

> view matrix models
> #2,-0.67984,0.70707,-0.19457,113.41,-0.72732,-0.6161,0.30237,249.86,0.09392,0.34708,0.93312,154.24

> view matrix models
> #2,-0.67984,0.70707,-0.19457,127.02,-0.72732,-0.6161,0.30237,236.7,0.09392,0.34708,0.93312,149.7

> view matrix models
> #2,-0.67984,0.70707,-0.19457,111.34,-0.72732,-0.6161,0.30237,211.97,0.09392,0.34708,0.93312,143.3

> view matrix models
> #2,-0.67984,0.70707,-0.19457,108.35,-0.72732,-0.6161,0.30237,215.89,0.09392,0.34708,0.93312,144.39

> view matrix models
> #2,-0.67984,0.70707,-0.19457,99.158,-0.72732,-0.6161,0.30237,216.72,0.09392,0.34708,0.93312,159.47

> view matrix models
> #2,-0.22549,0.9066,-0.35671,98.687,-0.9405,-0.2981,-0.16311,216.93,-0.25421,0.2987,0.91987,159.82

> view matrix models
> #2,0.46141,0.84134,0.28151,96.839,0.83989,-0.31202,-0.4441,217.11,-0.28581,0.44135,-0.8506,164.38

> view matrix models
> #2,0.13847,0.71804,0.68209,96.281,-0.68426,0.56726,-0.45825,214.37,-0.71597,-0.40328,0.56988,163.69

> view matrix models
> #2,0.32306,-0.23933,0.91561,99.204,0.92648,0.27731,-0.25441,214.28,-0.19302,0.9305,0.31132,159.13

> view matrix models
> #2,0.16692,-0.35943,0.91812,99.716,0.97449,-0.081518,-0.20908,215.5,0.15,0.9296,0.33666,158.93

> view matrix models
> #2,-0.21471,-0.35986,0.90797,99.892,0.91717,-0.39384,0.060798,215.94,0.33571,0.84581,0.41461,158.96

> view matrix models
> #2,-0.20533,-0.32784,0.92215,99.725,0.91348,-0.40237,0.060349,215.98,0.35126,0.85476,0.3821,159.01

> view matrix models
> #2,-0.20533,-0.32784,0.92215,110.31,0.91348,-0.40237,0.060349,212.57,0.35126,0.85476,0.3821,168.39

> view matrix models
> #2,-0.20533,-0.32784,0.92215,120.15,0.91348,-0.40237,0.060349,207.95,0.35126,0.85476,0.3821,178.16

> view matrix models
> #2,-0.20533,-0.32784,0.92215,120.09,0.91348,-0.40237,0.060349,202.41,0.35126,0.85476,0.3821,173.67

> open /home/milad/Documents/HIV/For_model_angelo/HIV-coot-
> gp120andgp41full_final.pdb

Chain information for HIV-coot-gp120andgp41full_final.pdb #3  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> transparency 50

> view matrix models
> #2,-0.20533,-0.32784,0.92215,118.07,0.91348,-0.40237,0.060349,195.71,0.35126,0.85476,0.3821,182.34

> view matrix models
> #2,0.6718,0.66153,0.33327,115.64,-0.24921,0.62554,-0.73932,194.52,-0.69756,0.41362,0.58509,183.84

> view matrix models
> #2,0.18534,0.97218,0.1432,115.18,-0.69431,0.23268,-0.68103,196.03,-0.6954,0.026796,0.71812,184.94

> view matrix models
> #2,0.38793,0.8716,0.29971,115.04,-0.45509,0.46391,-0.76005,195.28,-0.8015,0.15845,0.57662,184.88

> view matrix models
> #2,0.19278,0.70064,0.68698,114.65,-0.52718,0.66444,-0.52972,193.87,-0.8276,-0.26004,0.49746,186.72

> view matrix models
> #2,-0.10831,0.67501,0.72981,114.74,0.90437,-0.23792,0.35427,194.24,0.41277,0.69839,-0.58469,185.69

> view matrix models
> #2,-0.41612,0.50374,0.75703,115.44,0.79861,-0.19565,0.56916,193.5,0.43482,0.84141,-0.32088,184.38

> view matrix models
> #2,-0.12964,0.61317,0.77924,114.85,0.4794,-0.64915,0.59057,195.29,0.86797,0.45013,-0.2098,185.39

> view matrix models
> #2,-0.12121,0.7673,0.62973,114.68,0.53416,-0.4843,0.69291,194.35,0.83665,0.42036,-0.35116,185.92

> view matrix models
> #2,-0.12121,0.7673,0.62973,119.21,0.53416,-0.4843,0.69291,193.35,0.83665,0.42036,-0.35116,188.85

> view matrix models
> #2,0.26738,0.79596,0.54309,119.21,0.15472,-0.59176,0.79113,193.62,0.95109,-0.1275,-0.28137,190.7

> view matrix models
> #2,0.27047,0.79355,0.54509,119.01,0.16094,-0.59549,0.78708,188.14,0.94918,-0.12516,-0.28877,193.79

> view matrix models
> #2,0.6006,0.51111,0.61486,119.77,0.0023549,-0.77013,0.63788,189.3,0.79955,-0.38166,-0.46374,195.33

> view matrix models
> #2,0.4678,0.62488,0.62505,119.36,0.048421,-0.72426,0.68782,188.96,0.88251,-0.2915,-0.36907,194.68

> view matrix models
> #2,0.37722,0.69935,0.60714,119.16,0.027325,-0.66369,0.74751,188.56,0.92572,-0.26539,-0.26946,194.28

> view matrix models
> #2,0.32255,0.72212,0.61197,119.08,0.08631,-0.66627,0.7407,188.57,0.94261,-0.18609,-0.27723,193.99

> view matrix models
> #2,0.39547,0.81399,0.42546,119.23,0.20199,-0.52896,0.82426,187.76,0.89599,-0.24003,-0.37361,194.49

> view matrix models
> #2,0.34099,0.15118,-0.92783,125.69,0.37949,-0.92513,-0.011265,191.61,-0.86006,-0.34827,-0.37283,195.57

> view matrix models
> #2,0.20835,-0.14373,-0.96744,126.98,0.051967,-0.98612,0.1577,191.49,-0.97667,-0.083131,-0.19798,194.1

> view matrix models
> #2,0.31607,0.087082,-0.94473,125.99,0.58046,-0.80541,0.11996,190.7,-0.75045,-0.58629,-0.30511,196.25

> view matrix models
> #2,0.31607,0.087082,-0.94473,121.56,0.58046,-0.80541,0.11996,185.57,-0.75045,-0.58629,-0.30511,193.21

> view matrix models
> #2,0.31607,0.087082,-0.94473,115.81,0.58046,-0.80541,0.11996,138.07,-0.75045,-0.58629,-0.30511,198.37

> view matrix models
> #2,0.31607,0.087082,-0.94473,113.77,0.58046,-0.80541,0.11996,151.57,-0.75045,-0.58629,-0.30511,201.21

> view matrix models
> #2,0.31607,0.087082,-0.94473,106.88,0.58046,-0.80541,0.11996,158.09,-0.75045,-0.58629,-0.30511,195.54

> view matrix models
> #2,0.79007,-0.47426,-0.38841,107.25,0.58492,0.3936,0.70919,151.8,-0.18346,-0.7875,0.58837,193.52

> view matrix models
> #2,0.79007,-0.47426,-0.38841,111.82,0.58492,0.3936,0.70919,131.3,-0.18346,-0.7875,0.58837,190.97

> close #2

> open
> /home/milad/Documents/HIV/Fab_cow_bd148/Fab_cow_bd148_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
> /home/milad/Documents/HIV/Fab_cow_bd148/Fab_cow_bd148_unrelaxed_rank_004_alphafold2_multimer_v3_model_2_seed_000.pdb

Chain information for
Fab_cow_bd148_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#2  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Chain information for
Fab_cow_bd148_unrelaxed_rank_004_alphafold2_multimer_v3_model_2_seed_000.pdb
#4  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #!3 target m

> show #!3 target m

> show #2 target m

> hide #2 target m

> select #4/B:90

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #4/B:106

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select clear


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.7rc202311302110 (2023-11-30)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 535.129.03
OpenGL renderer: NVIDIA GeForce RTX 2060 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_AU.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Micro-Star International Co., Ltd.
Model: Stealth 15M A11SEK
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 8 11th Gen Intel(R) Core(TM) i7-1185G7 @ 3.00GHz
Cache Size: 12288 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            15Gi       1.3Gi        11Gi       315Mi       2.2Gi        13Gi
	Swap:          2.0Gi          0B       2.0Gi

Graphics:
	00:02.0 VGA compatible controller [0300]: Intel Corporation TigerLake-LP GT2 [Iris Xe Graphics] [8086:9a49] (rev 01)	
	DeviceName: Onboard - Video	
	Subsystem: Micro-Star International Co., Ltd. [MSI] TigerLake-LP GT2 [Iris Xe Graphics] [1462:12d9]

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7rc202311302110
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.45.1
    funcparserlib: 2.0.0a0
    glfw: 2.6.3
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.0
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.0.0
    prompt-toolkit: 3.0.41
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.1
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.12
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

[Eric Pettersen]

Looks like remote display