![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 23 months ago
Closed 23 months ago
#10407 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.0-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001e1fb1300 (most recent call first):
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 200000,
"procRole" : "Background",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 2372,
"osVersion" : {
"train" : "macOS 14.0",
"build" : "23A344",
"releaseType" : "User"
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"captureTime" : "2023-12-27 12:22:19.0005 -0800",
"codeSigningMonitor" : 1,
"incident" : "9363C7CA-24C3-4491-B70F-339D8CAC9885",
"pid" : 99611,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-12-17 19:45:29.5595 -0800",
"procStartAbsTime" : 2471134630422,
"procExitAbsTime" : 4815534707005,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1A9CDC3E-D796-52D2-98E3-F9D64BDFB74D","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "DE354844-D00B-8B4C-25E5-C0D511800C1A",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRXOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVHg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 5,
"sleepWakeUUID" : "4E2F22B0-0608-490D-A28B-F6B783300538",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105553653137384\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO 600020000000-600040000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":99611},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105553653137384\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO 600020000000-600040000000 [512.0M] rw-\/rwx SM=PRV ",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jacobposner/Downloads/AF-A0A3Q2D0W7-F1-model_v4.pdb format pdb
Summary of feedback from opening
/Users/jacobposner/Downloads/AF-A0A3Q2D0W7-F1-model_v4.pdb
---
warning | Ignored bad PDB record found on line 38
DBREF XXXX A 1 284 UNP A0A3Q2D0W7 A0A3Q2D0W7_CYPVA 1 284
AF-A0A3Q2D0W7-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for methionine adenosyltransferase 2 subunit
β (A0A3Q2D0W7) [more info...]
Chain information for AF-A0A3Q2D0W7-F1-model_v4.pdb #1
---
Chain | Description
A | methionine adenosyltransferase 2 subunit β
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> open 4NDN
4ndn title:
Structural insights of MAT enzymes: MATa2b complexed with SAM and PPNP [more
info...]
Chain information for 4ndn #2
---
Chain | Description | UniProt
A B C D | S-adenosylmethionine synthase isoform type-2 | METK2_HUMAN 1-395
E F | Methionine adenosyltransferase 2 subunit beta | MAT2B_HUMAN 1-323
Non-standard residues in 4ndn #2
---
EDO — 1,2-ethanediol (ethylene glycol)
MG — magnesium ion
PPK — (diphosphono)aminophosphonic acid
SAM — S-adenosylmethionine
> hide surfaces
> hide cartoons
> show cartoons
> hide atoms
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker AF-A0A3Q2D0W7-F1-model_v4.pdb, chain A (#1) with 4ndn, chain F
(#2), sequence alignment score = 697.8
RMSD between 188 pruned atom pairs is 0.792 angstroms; (across all 252 pairs:
6.055)
> select #1/A
2277 atoms, 2329 bonds, 284 residues, 1 model selected
> color sel blue
> select #2/E#2/F
4945 atoms, 4975 bonds, 1 pseudobond, 699 residues, 2 models selected
> color (#!2 & sel) red
> color (#!2 & sel) magenta
> select clear
> select #1/A
2277 atoms, 2329 bonds, 284 residues, 1 model selected
> color sel purple
> color sel #1cee30ff
> color sel #1af020ff
> color sel #1af215ff
> color sel #1df214ff
> color sel #1ff313ff
> color sel #20f312ff
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> color sel #20f510ff
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> color sel #00ff6fff
> color sel #00ff86ff
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> color sel #01e0fdff
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> color sel #02a0fcff
> color sel #0492fdff
> color sel #0486fdff
> color sel #0484fdff
> color sel #0482fdff
> color sel #0482fcff
> color sel #0483fcff
> color sel #0484fcff
> color sel #0485fcff
> color sel #0487fcff
> color sel #0491fcff
> color sel #049dfcff
> color sel #04abfdff
> color sel #02cafcff
> color sel #02d5fcff
> color sel #02e1feff
> color sel #02e7feff
> color sel #02e9feff
> color sel #02eafeff
> color sel #01ecfdff
> color sel #01f1fdff
> color sel #01f2feff
> color sel #01f4ffff
> color sel #01f5ffff
> color sel #00f3feff
> color sel #00f2feff
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #2/E #2/F
Alignment identifier is 1
> open /Users/jacobposner/Downloads/AF-G7HV35-F1-model_v4.cif
Chain information for AF-G7HV35-F1-model_v4.cif #3
---
Chain | Description | UniProt
A | S-adenosylmethionine synthase | G7HV35_9CORY 1-407
> ui mousemode right zoom
> close session
> open /Users/jacobposner/Downloads/AF-G7HV35-F1-model_v4.cif format mmcif
Chain information for AF-G7HV35-F1-model_v4.cif #1
---
Chain | Description | UniProt
A | S-adenosylmethionine synthase | G7HV35_9CORY 1-407
> open 4NDN
4ndn title:
Structural insights of MAT enzymes: MATa2b complexed with SAM and PPNP [more
info...]
Chain information for 4ndn #2
---
Chain | Description | UniProt
A B C D | S-adenosylmethionine synthase isoform type-2 | METK2_HUMAN 1-395
E F | Methionine adenosyltransferase 2 subunit beta | MAT2B_HUMAN 1-323
Non-standard residues in 4ndn #2
---
EDO — 1,2-ethanediol (ethylene glycol)
MG — magnesium ion
PPK — (diphosphono)aminophosphonic acid
SAM — S-adenosylmethionine
> select add #2
17089 atoms, 16919 bonds, 20 pseudobonds, 2623 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/A #2/B #2/C #2/D
Alignment identifier is 1
> sequence chain #2/E #2/F
Alignment identifier is 2
> undo
> redo
> select #1/A:364-407
357 atoms, 364 bonds, 44 residues, 1 model selected
> select #1/A
3074 atoms, 3130 bonds, 407 residues, 1 model selected
> select #2/A-D:395
52 atoms, 52 bonds, 4 residues, 1 model selected
> select #2/A,C:15-395/B:13-395/D:14-395
11583 atoms, 11814 bonds, 2 pseudobonds, 1487 residues, 2 models selected
> select #2/E-F:281-323
722 atoms, 740 bonds, 86 residues, 1 model selected
> select #2/E-F:15-323
4856 atoms, 4972 bonds, 1 pseudobond, 613 residues, 2 models selected
> select #1/A:363-407
365 atoms, 372 bonds, 45 residues, 1 model selected
> select #1/A
3074 atoms, 3130 bonds, 407 residues, 1 model selected
> ui tool show Matchmaker
> matchmaker #1 to #2/D pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 4ndn, chain D (#2) with AF-G7HV35-F1-model_v4.cif, chain A (#1),
sequence alignment score = 1176.7
RMSD between 348 pruned atom pairs is 0.652 angstroms; (across all 375 pairs:
2.261)
> color sel cornflower blue
> color sel #97e67aff
> color sel #abe57aff
> color sel #d2e67aff
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> set bgColor white
> set bgColor #ffffff00
> select #2/A#2/B#2/C#2/D
12144 atoms, 11944 bonds, 19 pseudobonds, 1924 residues, 3 models selected
> hide sel cartoons
> select #2/D
3113 atoms, 3049 bonds, 505 residues, 1 model selected
> show sel cartoons
> open "/Users/jacobposner/Downloads/AF-G7HV35-F1-model_v4 copy.cif"
Chain information for AF-G7HV35-F1-model_v4 copy.cif #3
---
Chain | Description | UniProt
A | S-adenosylmethionine synthase | G7HV35_9CORY 1-407
> ui tool show Matchmaker
> select #2/C
2949 atoms, 2912 bonds, 7 pseudobonds, 456 residues, 3 models selected
> show sel cartoons
> hide sel cartoons
> matchmaker #3/A to #2/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 4ndn, chain C (#2) with AF-G7HV35-F1-model_v4 copy.cif, chain A
(#3), sequence alignment score = 1145.2
RMSD between 324 pruned atom pairs is 0.793 angstroms; (across all 353 pairs:
1.714)
> select ::name="SAM"
54 atoms, 58 bonds, 2 residues, 1 model selected
> show sel atoms
> select ::name="EDO"::name="HOH"::name="MG"::name="PPK"::name="SAM"
650 atoms, 133 bonds, 15 pseudobonds, 523 residues, 2 models selected
> show sel atoms
> ui mousemode right select
> select clear
Drag select of 1 atoms, 2 residues, 1 pseudobonds
Drag select of 1 atoms, 5 residues
> select clear
Drag select of 3 atoms, 7 residues, 1 pseudobonds
> select clear
> select ::name="MG"
4 atoms, 4 residues, 1 model selected
> color sel magenta
> select clear
Drag select of 9 residues, 3 atoms
> select clear
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
2023-12-27 12:24:45,531 WARNING Retrying (Retry(total=2, connect=None,
read=None, redirect=None, status=None)) after connection broken by
'NewConnectionError('<urllib3.connection.HTTPConnection object at
0x14dee0f10>: Failed to establish a new connection: [Errno 60] Operation timed
out')':
/cxservices/api/v1/chimerax/updates?uuid=26b2c1b5-d13b-5c92-862d-f16b76534655&OS=macosx&OSVersion=14.0&ChimeraXVersion=1.6.1
2023-12-27 12:26:00,537 WARNING Retrying (Retry(total=1, connect=None,
read=None, redirect=None, status=None)) after connection broken by
'NewConnectionError('<urllib3.connection.HTTPConnection object at
0x14dc31ca0>: Failed to establish a new connection: [Errno 60] Operation timed
out')':
/cxservices/api/v1/chimerax/updates?uuid=26b2c1b5-d13b-5c92-862d-f16b76534655&OS=macosx&OSVersion=14.0&ChimeraXVersion=1.6.1
2023-12-27 12:27:15,541 WARNING Retrying (Retry(total=0, connect=None,
read=None, redirect=None, status=None)) after connection broken by
'NewConnectionError('<urllib3.connection.HTTPConnection object at
0x14dc31e20>: Failed to establish a new connection: [Errno 60] Operation timed
out')':
/cxservices/api/v1/chimerax/updates?uuid=26b2c1b5-d13b-5c92-862d-f16b76534655&OS=macosx&OSVersion=14.0&ChimeraXVersion=1.6.1
OpenGL version: 4.1 Metal - 86
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11B000EMLL/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.1.1
OS Loader Version: 10151.1.1
Software:
System Software Overview:
System Version: macOS 14.0 (23A344)
Kernel Version: Darwin 23.0.0
Time since boot: 16 days, 42 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
XG2700 SERIES:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
MolecularDynamicsViewer: 1.4
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 23 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 23 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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