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#10355 closed defect (duplicate)

ArtiaX:boolean index did not match indexed array along dimension 0

Reported by:	chimerax-bug-report@…	Owned by:	Utz Ermel
Priority:	normal	Milestone:
Component:	Third Party	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description (last modified by Eric Pettersen)

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\lenovo\Desktop\Mito_seg\PDCcore_4.3A.mrc format mrc

Opened PDCcore_4.3A.mrc as #1, grid size 240,240,240, pixel 1.5, shown at
level 0.152, step 1, values float32  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  

> open C:/Users/lenovo/Desktop/new/mitoE1left_01.star
> C:/Users/lenovo/Desktop/new/mitoE1middle_01.star
> C:/Users/lenovo/Desktop/new/mitoE1right_01.star
> C:/Users/lenovo/Desktop/new/mitoE3_01.star format star

Summary of feedback from opening
C:/Users/lenovo/Desktop/new/mitoE1left_01.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
C:/Users/lenovo/Desktop/new/mitoE1middle_01.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
C:/Users/lenovo/Desktop/new/mitoE1right_01.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening C:/Users/lenovo/Desktop/new/mitoE3_01.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list mitoE1left_01.star with 4220 particles.  
Opened Particle list mitoE1middle_01.star with 6499 particles.  
Opened Particle list mitoE1right_01.star with 6319 particles.  
Opened Particle list mitoE3_01.star with 2977 particles.  

> open C:/Users/lenovo/Desktop/new/local-1_new1.mrc

Opened local-1_new1.mrc as #3, grid size 152,146,150, pixel 3, shown at level
0.206, step 1, values float32  

> select add #3

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #3,1,0,0,-43.689,0,1,0,20.425,0,0,1,-31.727

> view matrix models #3,1,0,0,-23.522,0,1,0,75.343,0,0,1,-110

> view matrix models #3,1,0,0,-31.106,0,1,0,61.773,0,0,1,-107.79

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.28889,-0.80346,0.52057,129.94,0.90015,-0.042807,0.43347,-25.829,-0.32599,0.59382,0.7356,-79.421

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.28889,-0.80346,0.52057,96.224,0.90015,-0.042807,0.43347,-74.409,-0.32599,0.59382,0.7356,-84.535

> view matrix models
> #3,-0.28889,-0.80346,0.52057,127.86,0.90015,-0.042807,0.43347,-70.298,-0.32599,0.59382,0.7356,-102.28

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.66796,-0.52259,0.52984,-38.553,0.25338,0.82912,0.49836,-103.98,-0.69974,-0.19863,0.68623,56.705

> view matrix models
> #3,0.87703,-0.18323,0.44412,-90.141,0.0071173,0.92927,0.36933,-54.953,-0.48038,-0.32076,0.8163,13.808

> ui mousemode right "translate selected models"

> view matrix models
> #3,0.87703,-0.18323,0.44412,-86.603,0.0071173,0.92927,0.36933,-84.563,-0.48038,-0.32076,0.8163,20.354

> view matrix models
> #3,0.87703,-0.18323,0.44412,-73.159,0.0071173,0.92927,0.36933,-64.09,-0.48038,-0.32076,0.8163,35.194

> view matrix models
> #3,0.87703,-0.18323,0.44412,-81.072,0.0071173,0.92927,0.36933,-43.6,-0.48038,-0.32076,0.8163,25.014

> ui tool show "Fit in Map"

> fitmap #3 inMap #1

Fit map local-1_new1.mrc in map PDCcore_4.3A.mrc using 33267 points  
correlation = 0.7724, correlation about mean = 0.1002, overlap = 932.9  
steps = 404, shift = 31.6, angle = 38 degrees  
  
Position of local-1_new1.mrc (#3) relative to PDCcore_4.3A.mrc (#1)
coordinates:  
Matrix rotation and translation  
0.79205691 0.26398192 0.55041746 -136.47208594  
-0.14004631 0.95619281 -0.25706483 166.80409397  
-0.59416569 0.12652604 0.79432883 -13.17881991  
Axis 0.30133547 0.89914420 -0.31739035  
Axis point -61.05950898 0.00000000 286.76072520  
Rotation angle (degrees) 39.53019304  
Shift along axis 113.03988374  
  

> fitmap #2.2.1.3 inMap #1

Fit molecule Markers (#2.2.1.3) to map PDCcore_4.3A.mrc (#1) using 4220 atoms  
average map value = 1.561e-05, steps = 52  
shifted from previous position = 2.7  
rotated from previous position = 2.87 degrees  
atoms outside contour = 4220, contour level = 0.15203  
  
Position of Markers (#2.2.1.3) relative to PDCcore_4.3A.mrc (#1) coordinates:  
Matrix rotation and translation  
1.00000000 0.00000000 0.00000000 0.00000000  
0.00000000 1.00000000 0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.00000000 0.00000000 1.00000000  
Axis point 0.00000000 0.00000000 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis 0.00000000  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.56942,-0.64418,0.51067,14.178,0.50707,0.7642,0.39859,-39.371,-0.64702,0.03198,0.7618,12.682

> ui mousemode right "translate selected models"

> view matrix models
> #3,0.56942,-0.64418,0.51067,59.183,0.50707,0.7642,0.39859,-79.178,-0.64702,0.03198,0.7618,1.6437

> view matrix models
> #3,0.56942,-0.64418,0.51067,34.026,0.50707,0.7642,0.39859,-112.51,-0.64702,0.03198,0.7618,14.92

> view matrix models
> #3,0.56942,-0.64418,0.51067,34.69,0.50707,0.7642,0.39859,-117.09,-0.64702,0.03198,0.7618,13.108

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.12446,-0.81127,0.57126,102.51,0.80467,0.41938,0.42027,-119.69,-0.58053,0.40737,0.705,-29.839

> ui mousemode right "translate selected models"

> view matrix models
> #3,0.12446,-0.81127,0.57126,92.145,0.80467,0.41938,0.42027,-108.57,-0.58053,0.40737,0.705,-33.278

> fitmap #3 inMap #1

Fit map local-1_new1.mrc in map PDCcore_4.3A.mrc using 33267 points  
correlation = 0.7727, correlation about mean = 0.1011, overlap = 933.3  
steps = 200, shift = 13.4, angle = 18.3 degrees  
  
Position of local-1_new1.mrc (#3) relative to PDCcore_4.3A.mrc (#1)
coordinates:  
Matrix rotation and translation  
0.37746167 -0.82802304 0.41460889 94.83950183  
0.71002630 0.54620816 0.44443143 -125.16727421  
-0.59446222 0.12662738 0.79409078 -13.06285602  
Axis -0.17024300 0.54054471 0.82391064  
Axis point 111.49369212 11.26907439 0.00000000  
Rotation angle (degrees) 68.96855222  
Shift along axis -94.56689504  
  

> hide #!2.2.3 models

> hide #!2.2.4 models

> hide #!2.2.1 models

set axis size 0.1  
0.1  
['.arrow', '0', '0', '0', '0.1', '0', '0', '0.006666666666666667',
'0.02666666666666667']  
set axis size 0.1  
0.1  
['.arrow', '0', '0', '0', '0.1', '0', '0', '0.006666666666666667',
'0.02666666666666667']  

> artiax particles #2.2.2 axesSize 0.1

> artiax particles #2.2.2 radius 1.0

> volume #3 level 0.06692

> select subtract #3

Nothing selected  

> hide #!2.2.2 models

> show #!2.2.2 models

> hide #!2.2.2 models

> show #!2.2.2 models

> ui mousemode right "translate selected particles"

> show #!2.2.3 models

> hide #!2.2.3 models

> show #!2.2.3 models

> hide #!2.2.3 models

> select add #2.2

20015 atoms, 20015 residues, 17 models selected  

> ui mousemode right "translate selected particles"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  

[deleted to fit within ticket limits]

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 639, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 538, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 39, in mouse_drag  
self._translate(shift)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\mouse.py", line 80, in _translate  
translate_instances(step, self._collections, self._masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 637, in
translate_instances  
move_instances(t, drawings, masks)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 642, in
move_instances  
d.move_children(tf, m)  
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\particle\SurfaceCollectionModel.py", line 350, in
move_children  
spi[:, :3, :] = scene_pos.masked(pm).array()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
IndexError: boolean index did not match indexed array along dimension 0;
dimension is 0 but corresponding boolean dimension is 4220  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\geometry\place.py", line 728, in masked  
p = Places(place_array=self.array()[mask])  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 27.20.100.8729
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: LENOVO
Model: 81TC
OS: Microsoft Windows 10 教育版 (Build 19045)
Memory: 16,966,471,680
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-10710U CPU @ 1.10GHz
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    pandas: 2.1.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.5.1
    superqt: 0.6.1
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Cc:	Tom Goddard added
Component:	Unassigned → Third Party
Description:	modified (diff)
Owner:	set to Utz Ermel
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → ArtiaX:boolean index did not match indexed array along dimension 0

comment:2 by Eric Pettersen, 2 years ago

Resolution:	→ duplicate
Status:	assigned → closed

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