Opened 8 years ago

Closed 8 years ago

#1025 closed defect (fixed)

opening non-mmCIF tries to find mmCIF metadata

Reported by: Elaine Meng Owned by: Greg Couch
Priority: major Milestone:
Component: Input/Output Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

For example,

open emdb:1024

Traceback (most recent call last):

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py", line 205, in execute

cmd.run(cmd_text)

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py", line 2569, in run

result = ci.function(session, kw_args)

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/open.py", line 42, in open

from_database=from_database, ignore_cache=ignore_cache, kw))

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/open.py", line 87, in open

show_citations(session, models)

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/open.py", line 138, in show_citations

c = citations(m, only='primary')

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/mmcif.py", line 200, in citations

"citation", "citation_author"])

File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/mmcif.py", line 348, in get_mmcif_tables_from_metadata

raw_tables = model.metadata

AttributeError: 'Volume' object has no attribute 'metadata'

Change History (1)

comment:1 by Greg Couch, 8 years ago

Resolution: → fixed
Status: assigned → closed

Limit trying to show citation to structures. Only knows about mmCIF metadata for now.

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