![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#10049 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000202aa1240 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 570000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,4",
"coalitionID" : 22040,
"osVersion" : {
"train" : "macOS 14.0",
"build" : "23A344",
"releaseType" : "User"
},
"captureTime" : "2023-10-23 08:01:07.1686 -0700",
"codeSigningMonitor" : 1,
"incident" : "56F833E3-F053-42B4-B6AB-DF62C32E41F6",
"pid" : 96049,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-10-14 21:02:32.9564 -0700",
"procStartAbsTime" : 5742481902877,
"procExitAbsTime" : 13756434107072,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"C9D66928-EC95-5942-8327-F61B31661DD4","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "FFCD4D93-CD88-117A-6D8F-3C17C4437043",
"lowPowerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"sleepWakeUUID" : "EFE6966E-4C4E-430A-8FFB-7BF36FC0445C",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140723058360296\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca3e7c000-7ffcc959c000 [599.1M] r-x\/r-x SM=COW ...t_id=9bd6c11d",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":96049},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140723058360296\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca3e7c000-7ffcc959c000 [599.1M] r-x\/r-x SM=COW ...t_id=9bd6c11d",
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"faultingThread" : 0,
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},
"reportNotes" : [
"PC register does not match crashing frame (0x0 vs 0x7FF89F81EA78)"
]
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> fetch 1RZ8
Unknown command: fetch 1RZ8
> open 1RZ8
1rz8 title:
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]
Chain information for 1rz8 #1
---
Chain | Description
A C | Fab 17b light chain
B D | Fab 17b heavy chain
1rz8 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /B:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> delete sel
> select /D:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /B:1-213
Nothing selected
> select /D:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> select /D:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /B:1-213
Nothing selected
> select /D:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> select /B:1-213
Nothing selected
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> undo
> select up
1828 atoms, 1754 bonds, 344 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> select up
5478 atoms, 5124 bonds, 1130 residues, 1 model selected
> open 1RZ8
1rz8 title:
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]
Chain information for 1rz8 #2
---
Chain | Description
A C | Fab 17b light chain
B D | Fab 17b heavy chain
1rz8 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> close #1
> close
> open 1RZ8
1rz8 title:
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]
Chain information for 1rz8 #1
---
Chain | Description
A C | Fab 17b light chain
B D | Fab 17b heavy chain
1rz8 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> select /C:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> delete sel
> select /D:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> delete sel
> select /A:1-212
1646 atoms, 1685 bonds, 214 residues, 1 model selected
> color sel orange red
> select /C:1-212
Nothing selected
> select /B:1-213
1712 atoms, 1754 bonds, 228 residues, 1 model selected
> color sel cornflower blue
> lighting soft
> select add #1
3832 atoms, 3439 bonds, 916 residues, 1 model selected
> select subtract #1
Nothing selected
> set bgColor black
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting soft
> lighting simple
> lighting full
> lighting soft
> lighting full
> lighting simple
> lighting full
> sequence chain #1/A#1/C
Alignment identifier is 1/A
> sequence chain #1/B#1/D
Alignment identifier is 1/B
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-9
65 atoms, 65 bonds, 9 residues, 1 model selected
> select /A:9
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:9-78
506 atoms, 515 bonds, 70 residues, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1-3
23 atoms, 22 bonds, 3 residues, 1 model selected
> select /A:1-3
23 atoms, 22 bonds, 3 residues, 1 model selected
> select /A:1-3,5-70
497 atoms, 505 bonds, 69 residues, 1 model selected
> select /A:1-3,5-70
497 atoms, 505 bonds, 69 residues, 1 model selected
> select /A:109
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:107-109
27 atoms, 26 bonds, 3 residues, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1-118
920 atoms, 944 bonds, 120 residues, 1 model selected
> select /A:1-118
920 atoms, 944 bonds, 120 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:60-61
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:60-66
47 atoms, 47 bonds, 7 residues, 1 model selected
> select /A:60-66
47 atoms, 47 bonds, 7 residues, 1 model selected
> select /A:60-66
47 atoms, 47 bonds, 7 residues, 1 model selected
> select /A:55-111
461 atoms, 473 bonds, 59 residues, 1 model selected
> select /A:193
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:193-212
147 atoms, 149 bonds, 20 residues, 1 model selected
> select /A:183
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:183-192
90 atoms, 92 bonds, 10 residues, 1 model selected
> select /A:79-80
15 atoms, 14 bonds, 2 residues, 1 model selected
> select /A:79-83
43 atoms, 43 bonds, 5 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-83
609 atoms, 620 bonds, 83 residues, 1 model selected
> select /A:1-83
609 atoms, 620 bonds, 83 residues, 1 model selected
> select /A:1-92
689 atoms, 704 bonds, 92 residues, 1 model selected
> select /A:1-98
766 atoms, 787 bonds, 100 residues, 1 model selected
> select /A:1-102
790 atoms, 811 bonds, 104 residues, 1 model selected
> select /A:1-108
846 atoms, 867 bonds, 110 residues, 1 model selected
> select /A:1-108
846 atoms, 867 bonds, 110 residues, 1 model selected
> select /A:1-112
870 atoms, 891 bonds, 114 residues, 1 model selected
> select /B:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /B:1-9
64 atoms, 63 bonds, 9 residues, 1 model selected
> select /B:1-100J
885 atoms, 904 bonds, 114 residues, 1 model selected
> select /B:1-103
926 atoms, 948 bonds, 118 residues, 1 model selected
> select /B:1-111
979 atoms, 1001 bonds, 126 residues, 1 model selected
> select /B:1-111,113
985 atoms, 1006 bonds, 127 residues, 1 model selected
> select /B:1-111,113
985 atoms, 1006 bonds, 127 residues, 1 model selected
> select /B:1-115
1002 atoms, 1024 bonds, 130 residues, 1 model selected
> select /B:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /B:1-113
991 atoms, 1013 bonds, 128 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-110
860 atoms, 881 bonds, 112 residues, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1-82
598 atoms, 608 bonds, 82 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-58
427 atoms, 434 bonds, 58 residues, 1 model selected
> select /A:59-60
12 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:59-62
34 atoms, 35 bonds, 4 residues, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1-111
865 atoms, 886 bonds, 113 residues, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1-110
860 atoms, 881 bonds, 112 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> show sel cartoons
> hide #!1 models
> select add #1
3832 atoms, 3439 bonds, 916 residues, 2 models selected
> show #!1 models
> show sel cartoons
> show sel atoms
> hide sel atoms
> select /A:106
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:106-115
72 atoms, 72 bonds, 10 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select /A:2
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:2-52
378 atoms, 385 bonds, 51 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-192
1499 atoms, 1534 bonds, 194 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-110
860 atoms, 881 bonds, 112 residues, 1 model selected
> select /B:1-113
991 atoms, 1013 bonds, 128 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-110
860 atoms, 881 bonds, 112 residues, 1 model selected
> select /A:1-110
860 atoms, 881 bonds, 112 residues, 1 model selected
> select /A:111
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:111-114
23 atoms, 23 bonds, 4 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-111
865 atoms, 886 bonds, 113 residues, 1 model selected
> select
> /A:4-5,10-13,19-25,33-38,45-49,53-54,62-67,70-75,84-90,97-98,102-106,114-118,129-139,145-150,153-154,159-163,173-182,191-197,205-210
825 atoms, 825 bonds, 104 residues, 1 model selected
> select /B:5
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:5-100G
829 atoms, 847 bonds, 107 residues, 1 model selected
> open 4JPV
Summary of feedback from opening 4JPV fetched from pdb
---
note | Fetching compressed mmCIF 4jpv from
http://files.rcsb.org/download/4jpv.cif
4jpv title:
Crystal structure of broadly and potently neutralizing antibody 3bnc117 in
complex with hiv-1 gp120 [more info...]
Chain information for 4jpv #2
---
Chain | Description
G | HIV-1 CLADE A STRAIN 93TH057 GP120 WITH LOOP d AND LOOPD V5 REPLACED FROM
HIV STRAIN 3415V1
H | HEAVY CHAIN OF ANTIBODY 3BNC117
L | LIGHT CHAIN OF ANTIBODY 3BNC117
Non-standard residues in 4jpv #2
---
EDO — 1,2-ethanediol (ethylene glycol)
EPE — 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid (HEPES)
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)
> select #2/G:44-492
2679 atoms, 2743 bonds, 2 pseudobonds, 342 residues, 2 models selected
> delete sel
> select ::name="EDO"::name="EPE"::name="HOH"::name="NAG"
740 atoms, 181 bonds, 571 residues, 2 models selected
> delete sel
> select #2/H:1-213
1676 atoms, 1728 bonds, 1 pseudobond, 216 residues, 2 models selected
> color (#!2 & sel) cornflower blue
> select #2/L:1-212
1603 atoms, 1639 bonds, 204 residues, 1 model selected
> color sel orange red
> color sel red
> select add #2
3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected
> lighting full
> lighting simple
> lighting full
> lighting soft
> lighting full
> select subtract #2
Nothing selected
> select add #2
3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-18.329,0,1,0,7.4624,0,0,1,97.08
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.7368,-0.57017,0.36337,12.837,0.66142,0.71927,-0.21253,-9.0505,-0.14018,0.39693,0.90708,88.408
> view matrix models
> #2,0.72954,-0.67035,0.13568,4.1626,0.68393,0.71374,-0.15107,-6.507,0.0044285,0.20301,0.97917,92.553
> hide sel cartoons
> hide sel surfaces
> hide sel atoms
> show sel atoms
> hide sel atoms
> show sel surfaces
> hide sel surfaces
> show sel cartoons
> sequence chain #2/H
Alignment identifier is 2/H
> sequence chain #2/L
Alignment identifier is 2/L
> select #2/H:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/L:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/L:1-110
817 atoms, 835 bonds, 102 residues, 1 model selected
> select #2/L:1-112
827 atoms, 845 bonds, 104 residues, 1 model selected
> view matrix models
> #2,0.78526,-0.61243,0.091109,0.13813,0.61624,0.78733,-0.018893,-0.48478,-0.060162,0.070981,0.99566,96.707
> view matrix models
> #2,0.2182,0.96776,0.12579,-15.529,-0.57288,0.022668,0.81933,72.082,0.79006,-0.25084,0.55936,67.273
> view matrix models
> #2,-0.38919,0.82081,0.4181,11.075,-0.28355,-0.53859,0.79342,75.489,0.87643,0.19024,0.44235,52.787
> view matrix models
> #2,-0.48342,0.80493,0.34408,9.5677,-0.23742,-0.49889,0.83351,75.857,0.84258,0.32124,0.43227,50.66
> ui mousemode right translate
> select #2/L:1-212
1603 atoms, 1639 bonds, 204 residues, 1 model selected
> color (#!2 & sel) orange red
> select #2/L:7-8
13 atoms, 13 bonds, 2 residues, 1 model selected
> select #2/L:7-8
13 atoms, 13 bonds, 2 residues, 1 model selected
> select add #1
3371 atoms, 3452 bonds, 444 residues, 3 models selected
> select add #2
6637 atoms, 6806 bonds, 1 pseudobond, 862 residues, 5 models selected
> select subtract #2
3358 atoms, 3439 bonds, 442 residues, 4 models selected
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,-7.7551,0,1,0,-12.319,0,0,1,-0.29929
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.96911,-0.19985,-0.1445,19.759,0.20367,0.97897,0.011995,-15.337,0.13906,-0.041055,0.98943,1.1969
> view matrix models
> #1,0.98863,0.044699,-0.14355,5.2685,-0.029028,0.99357,0.10946,-23.301,0.14751,-0.10405,0.98357,5.3388
> view matrix models
> #1,0.98656,0.050663,-0.15537,6.2266,-0.036863,0.99522,0.090447,-21.238,0.15921,-0.083503,0.98371,3.97
> select subtract #1
1 model selected
> select add #2
3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected
> view matrix models
> #2,-0.42543,0.83576,0.34715,8.1705,-0.1628,-0.44801,0.87908,75.789,0.89023,0.31748,0.32666,45.015
> view matrix models
> #2,-0.4509,0.82247,0.34674,8.8231,-0.19613,-0.47027,0.86045,75.891,0.87076,0.31997,0.37336,47.469
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.44105,0.82766,0.34707,8.5778,-0.18334,-0.46165,0.86791,75.865,0.87856,0.31916,0.35535,46.515
> view matrix models
> #2,-0.46978,0.81237,0.34549,9.2677,-0.22028,-0.48686,0.84525,75.894,0.85486,0.32098,0.40766,49.314
> view matrix models
> #2,-0.44781,0.82411,0.34687,8.7472,-0.19213,-0.46757,0.86283,75.885,0.87324,0.31974,0.36772,47.169
> view matrix models
> #2,-0.31454,-0.94723,-0.061857,17.964,-0.85422,0.25403,0.45362,56.106,-0.41397,0.19552,-0.88905,13.633
> view matrix models
> #2,-0.21523,-0.97413,-0.068842,16.374,-0.87732,0.16192,0.45177,58.005,-0.42893,0.15763,-0.88948,14.525
> view matrix models
> #2,-0.21725,-0.97031,-0.1063,14.613,-0.90283,0.15835,0.39977,56.108,-0.37107,0.18282,-0.91043,12.116
> ui mousemode right "move picked models"
> view matrix models
> #2,-0.21725,-0.97031,-0.1063,13.176,-0.90283,0.15835,0.39977,53.241,-0.37107,0.18282,-0.91043,13.578
> sequence chain #1/A#1/C
Alignment identifier is 1/A
> sequence chain #1/B#1/D
Alignment identifier is 1/B
> select subtract #2
2 models selected
> select #2/H:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/L:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/L:1-112
827 atoms, 845 bonds, 104 residues, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/L:1-112
827 atoms, 845 bonds, 104 residues, 1 model selected
> select #1/B:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:1-113
991 atoms, 1013 bonds, 128 residues, 1 model selected
> select #1/A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:1-112
870 atoms, 891 bonds, 114 residues, 1 model selected
> select add #1
3358 atoms, 3439 bonds, 442 residues, 2 models selected
> select subtract #1
1 model selected
> ui mousemode right translate
> select #2/H:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/L:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/L:1-112
827 atoms, 845 bonds, 104 residues, 1 model selected
> select #1/B:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/B:1-113
991 atoms, 1013 bonds, 128 residues, 1 model selected
> select #1/A:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:1-112
870 atoms, 891 bonds, 114 residues, 1 model selected
> select #2/H:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/H:1-113
997 atoms, 1030 bonds, 123 residues, 1 model selected
> select #2/H:1-116
1015 atoms, 1048 bonds, 126 residues, 1 model selected
> select #2/L:1-2
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/L:1-112
827 atoms, 845 bonds, 104 residues, 1 model selected
> select add #2
3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 3 models selected
> select subtract #2
2 models selected
Unsupported scale factor (0.000000) detected on Display1
> lighting simple
> lighting full
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting simple
Unsupported scale factor (0.000000) detected on Display1
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 86
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,4
Model Number: Z15H00106LL/A
Chip: Unknown
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 10151.1.1
OS Loader Version: 10151.1.1
Software:
System Software Overview:
System Version: macOS 14.0 (23A344)
Kernel Version: Darwin 23.0.0
Time since boot: 17 days, 18 hours, 30 minutes
Graphics/Displays:
Apple M1 Max:
Chipset Model: Apple M1 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 24
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL P2719H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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