'PickedPseudobond' object has no attribute 'group'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/kmckenney/Desktop/CP020 Paper/CP020 Paper EM/Katie Files/Figure
> Files/Ab regions_GDIR_Glycans selected.cxs"

Log from Fri Aug 11 13:14:59 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/kmckenney/Desktop/Infant bNAbs/EM/Original EM Files/High res
> CP20.2_J198_C3_5_real_space_refined_012.pdb"

Chain information for High res CP20.2_J198_C3_5_real_space_refined_012.pdb #1  
---  
Chain | Description  
A E F | No description available  
B G I | No description available  
C J K | No description available  
D M N | No description available  
H O P | No description available  
L Q R | No description available  
  

> set bgColor white

> select /E/F/B/G/I/C/J/K/D/M/N/O/P/Q/R

19512 atoms, 20022 bonds, 13 pseudobonds, 2475 residues, 2 models selected  

> hide sel atoms

> select /A

3776 atoms, 3886 bonds, 5 pseudobonds, 459 residues, 2 models selected  

> select /H/L

1819 atoms, 1870 bonds, 240 residues, 1 model selected  

> style sel stick

Changed 1819 atom styles  

> hide sel atoms

> select /A

3776 atoms, 3886 bonds, 5 pseudobonds, 459 residues, 2 models selected  

> select /A

3776 atoms, 3886 bonds, 5 pseudobonds, 459 residues, 2 models selected  

> style sel stick

Changed 3776 atom styles  

> ui mousemode right select

Drag select of 584 atoms, 2 pseudobonds, 601 bonds  

> hide sel atoms

Drag select of 7 atoms, 5 bonds  

> hide sel atoms

Drag select of 384 atoms, 381 bonds  

> hide sel atoms

Drag select of 136 atoms, 130 bonds  

> hide sel atoms

Drag select of 416 atoms, 434 bonds  

> hide sel atoms

Drag select of 2 atoms, 1 bonds  

> hide sel atoms

Drag select of 1 atoms, 1 bonds  

> hide sel atoms

Drag select of 11 atoms, 10 bonds  

> hide sel atoms

Drag select of 11 atoms, 8 bonds  

> hide sel atoms

Drag select of 5 atoms, 3 bonds  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

> select clear

Drag select of 125 atoms, 134 bonds  

> name frozen N332 sel

Drag select of 469 atoms, 1 pseudobonds, 474 bonds  

> hide sel atoms

Drag select of 207 atoms, 209 bonds  

> hide sel atoms

Drag select of 4 atoms, 3 bonds  

> hide sel atoms

Drag select of 119 atoms, 109 bonds  

> hide sel atoms

Drag select of 3 atoms, 3 bonds  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

Drag select of 11 atoms, 8 bonds  

> hide sel atoms

Drag select of 33 atoms, 34 bonds  

> name frozen N156 sel

> select /A

3776 atoms, 3886 bonds, 6 pseudobonds, 459 residues, 3 models selected  

> show sel atoms

> show sel surfaces

> color (#!1 & sel) light gray

> select clear

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) blue

> select N156

33 atoms, 34 bonds, 3 residues, 1 model selected  

> color (#!1 & sel) blue

> style sel stick

Changed 33 atom styles  

> hide sel surfaces

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> hide sel surfaces

> select /A:448@OD1

1 atom, 1 residue, 1 model selected  

> undo

[Repeated 4 time(s)]

> select /A

3776 atoms, 3886 bonds, 5 pseudobonds, 459 residues, 2 models selected  

> show sel surfaces

> select /H/L

1819 atoms, 1870 bonds, 240 residues, 1 model selected  

> show sel atoms

> ui tool show "Show Sequence Viewer"

> sequence chain /A /E /F

Alignment identifier is 1  

> sequence chain /H /O /P

Alignment identifier is 2  

> sequence chain /L /Q /R

Alignment identifier is 3  

> select /H,O-P:1

27 atoms, 24 bonds, 3 residues, 1 model selected  

> select /H,O-P:1-26

534 atoms, 537 bonds, 78 residues, 1 model selected  

> select /H,O-P:1

27 atoms, 24 bonds, 3 residues, 1 model selected  

> select /H,O-P:1-25

522 atoms, 525 bonds, 75 residues, 1 model selected  

> name frozen FWR1-HC sel

> select /H,O-P:26

12 atoms, 9 bonds, 3 residues, 1 model selected  

> select /H,O-P:26-34

204 atoms, 207 bonds, 27 residues, 1 model selected  

> name frozen CDRH1 sel

> select /H,O-P:35

42 atoms, 45 bonds, 3 residues, 1 model selected  

> select /H,O-P:35-50

420 atoms, 438 bonds, 51 residues, 1 model selected  

> name frozen FWR2-HC sel

> select /H,O-P:51

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select /H,O-P:51-57

165 atoms, 168 bonds, 21 residues, 1 model selected  

> name frozen CDRH2 sel

> select /H,O-P:58

33 atoms, 33 bonds, 3 residues, 1 model selected  

> select /H,O-P:58-92

918 atoms, 936 bonds, 114 residues, 1 model selected  

> name frozen FWR3-HC sel

> select /H,O-P:93-94

48 atoms, 45 bonds, 6 residues, 1 model selected  

> select /H,O-P:93-102

636 atoms, 663 bonds, 75 residues, 1 model selected  

> name frozen CDRH3 sel

> select /H,O-P:103

42 atoms, 45 bonds, 3 residues, 1 model selected  

> select /H,O-P:103-112

219 atoms, 222 bonds, 30 residues, 1 model selected  

> name frozen FWR4-HC sel

> select /L,Q-R:3-4

45 atoms, 42 bonds, 6 residues, 1 model selected  

> select /L,Q-R:3-26

462 atoms, 468 bonds, 69 residues, 1 model selected  

> name frozen FWR1-LC sel

> select /L,Q-R:27-27A

66 atoms, 63 bonds, 9 residues, 1 model selected  

> select /L,Q-R:27-32

162 atoms, 159 bonds, 24 residues, 1 model selected  

> name frozen CDRL1 sel

> select /L,Q-R:33

21 atoms, 18 bonds, 3 residues, 1 model selected  

> select /L,Q-R:33-49

414 atoms, 429 bonds, 51 residues, 1 model selected  

> name frozen FWR2-LC sel

> select /L,Q-R:50

18 atoms, 15 bonds, 3 residues, 1 model selected  

> select /L,Q-R:50-52

66 atoms, 63 bonds, 9 residues, 1 model selected  

> name frozen CDRL2 sel

> select /L,Q-R:53-54

60 atoms, 57 bonds, 6 residues, 1 model selected  

> select /L,Q-R:53-88

783 atoms, 795 bonds, 108 residues, 1 model selected  

> name frozen FWR3-LC sel

> select /L,Q-R:89-90

30 atoms, 27 bonds, 6 residues, 1 model selected  

> select /L,Q-R:89-97

279 atoms, 288 bonds, 36 residues, 1 model selected  

> name frozen CDRL3 sel

> select /L,Q-R:98-99

45 atoms, 45 bonds, 6 residues, 1 model selected  

> select /L,Q-R:98-106A

207 atoms, 207 bonds, 30 residues, 1 model selected  

> name frozen FWR4-LC sel

> select /A,E-F:324-325

36 atoms, 33 bonds, 6 residues, 1 model selected  

> select /A,E-F:324-327

93 atoms, 90 bonds, 12 residues, 1 model selected  

> name frozen GDIR sel

> save "/Users/kmckenney/Desktop/CP020 Paper/CP020 Paper EM/Katie Files/Figure
> Files/Ab regions_GDIR_Glycans selected.cxs"

> select /H

1028 atoms, 1060 bonds, 131 residues, 1 model selected  

> color sel magenta

> show sel cartoons

> hide sel atoms

> select /L

791 atoms, 810 bonds, 109 residues, 1 model selected  

> show sel cartoons

> hide sel atoms

> select clear

> select GDIR

3437 atoms, 90 bonds, 436 residues, 1 model selected  

> select N156

33 atoms, 34 bonds, 3 residues, 1 model selected  

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> select CDRH3

636 atoms, 663 bonds, 75 residues, 1 model selected  

> select FWR3-LC

783 atoms, 795 bonds, 108 residues, 1 model selected  

> select FWR4-LC

207 atoms, 207 bonds, 30 residues, 1 model selected  

> select GDIR

3437 atoms, 90 bonds, 436 residues, 1 model selected  

> select /A,E-F:324

12 atoms, 9 bonds, 3 residues, 1 model selected  

> select /A,E-F:324-327

93 atoms, 90 bonds, 12 residues, 1 model selected  

> hide sel surfaces

> name frozen GDIR_2 sel

> select GDIR

3437 atoms, 90 bonds, 436 residues, 1 model selected  

> select GDIR_2

3437 atoms, 90 bonds, 436 residues, 1 model selected  

> select CDRL3

279 atoms, 288 bonds, 36 residues, 1 model selected  

> select clear

> select /A,E-F:324

12 atoms, 9 bonds, 3 residues, 1 model selected  

> select /A,E-F:324-327

93 atoms, 90 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) lime

> show sel surfaces

> hide sel surfaces

> select /L

791 atoms, 810 bonds, 109 residues, 1 model selected  

> select /A

3776 atoms, 3886 bonds, 5 pseudobonds, 459 residues, 2 models selected  

> show sel surfaces

> select clear

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) blue

> show sel surfaces

[Repeated 1 time(s)]

> select clear

[Repeated 1 time(s)]

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> show sel surfaces

> select N156

33 atoms, 34 bonds, 3 residues, 1 model selected  

> show sel surfaces

> hide sel atoms

> show sel surfaces

> show sel atoms

> show sel cartoons

> show sel surfaces

> style sel sphere

Changed 33 atom styles  

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> style sel sphere

Changed 125 atom styles  

> select clear

> save "/Users/kmckenney/Desktop/CP020 Paper/CP020 Paper EM/Katie Files/Figure
> Files/JPEG/V2 Figs/Fig 4b.jpg" width 864 height 598 supersample 3

> select ::name="BMA"::name="MAN"::name="NAG"

1329 atoms, 1371 bonds, 102 residues, 1 model selected  

> style sel sphere

Changed 1329 atom styles  

> select clear

> save "/Users/kmckenney/Desktop/CP020 Paper/CP020 Paper EM/Katie Files/Figure
> Files/JPEG/V2 Figs/Fig 4b.jpg" width 864 height 598 supersample 3

> select N332

125 atoms, 134 bonds, 12 residues, 1 model selected  

> style sel stick

Changed 125 atom styles  

> select /A,E-F:324

12 atoms, 9 bonds, 3 residues, 1 model selected  

> select /A,E-F:324-327

93 atoms, 90 bonds, 12 residues, 1 model selected  

> style sel stick

Changed 93 atom styles  

> style sel stick

Changed 93 atom styles  

> hide sel surfaces

> show sel surfaces

> hide sel surfaces

> select N156

33 atoms, 34 bonds, 3 residues, 1 model selected  

> style sel stick

Changed 33 atom styles  

> select CDRH3

636 atoms, 663 bonds, 75 residues, 1 model selected  

> show sel atoms

> select clear

> hide atoms

> undo

Drag select of 212 atoms  

> hide sel atoms

[Repeated 1 time(s)]Drag select of 212 atoms  

> hide sel atoms

> ui mousemode right "translate selected models"

> view matrix models #1,1,0,0,17.322,0,1,0,-36.04,0,0,1,-18.007

> view matrix models #1,1,0,0,25.96,0,1,0,-52.434,0,0,1,-28.503

> select /A,E-F:324-325

36 atoms, 33 bonds, 6 residues, 1 model selected  

> select /A,E-F:324-327

93 atoms, 90 bonds, 12 residues, 1 model selected  

> show sel atoms

> save "/Users/kmckenney/Desktop/CP020 Paper/CP020 Paper EM/Katie Files/Figure
> Files/Ab regions_GDIR_Glycans selected.cxs"

——— End of log from Fri Aug 11 13:14:59 2023 ———

opened ChimeraX session  

> select /A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select /A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> show sel atoms

> show sel surfaces

> hide sel surfaces

> select ::name="BMA"::name="MAN"::name="NAG"

1329 atoms, 1371 bonds, 102 residues, 1 model selected  

> style sel stick

Changed 1329 atom styles  

> interfaces select /A & ::polymer_type>0 contacting /B & ::polymer_type>0
> areaCutoff 0

42 contacting residues  

> ui tool show Contacts

> contacts interModel false ignoreHiddenModels true color #00f900

16592 contacts  

> select /A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select /A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select /A,E-F:262

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select /A,E-F:262

24 atoms, 21 bonds, 3 residues, 1 model selected  

> open /Users/kmckenney/Downloads/5c7k.pdb

5c7k.pdb title:  
Crystal structure BG505 sosip GP140 hiv-1 env trimer bound to broadly
neutralizing antibodies PGT128 and 8ANC195 [more info...]  
  
Chain information for 5c7k.pdb #2  
---  
Chain | Description | UniProt  
A | antibody fab PGT128 heavy chain | S6B291_HUMAN  
B | antibody fab PGT128 light chain | C6KXN3_HUMAN  
C | envelope glycoprotein GP120 | Q2N0S6_9HIV1  
D | envelope glycoprotein GP41 | Q2N0S6_9HIV1  
E | antibody fab 8ANC195 heavy chain | IGHG1_HUMAN  
F | antibody fab 8ANC195 light chain | IGKC_HUMAN  
  
Non-standard residues in 5c7k.pdb #2  
---  
BMA — β-D-mannopyranose (β-D-mannose; D-mannose; mannose)  
MAN — α-D-mannopyranose (α-D-mannose; D-mannose; mannose)  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
SO4 — sulfate ion  
  

> hide #!1 models

> ui mousemode right "translate selected models"

> view matrix models #1,1,0,0,-78.865,0,1,0,-80.672,0,0,1,-5.4334

> view matrix models #1,1,0,0,-199.49,0,1,0,-128.07,0,0,1,30.627

> ui mousemode right "move picked models"

> view matrix models #2,1,0,0,98.015,0,1,0,62.786,0,0,1,-44.788

> select #1/A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> select #1/A,E-F:301

24 atoms, 21 bonds, 3 residues, 1 model selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #2/A

Alignment identifier is 2/A  

> sequence chain #2/B

Alignment identifier is 2/B  

> sequence chain #2/C

Alignment identifier is 2/C  

> select #2/C:332

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/C:332

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/C:300

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/C:300

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A/B

8054 atoms, 8280 bonds, 2892 pseudobonds, 1020 residues, 5 models selected  

> style sel & #!2 stick

Changed 3249 atom styles  

> ui tool show Contacts

> contacts interModel false ignoreHiddenModels true color #00f900

7041 contacts  

> ui mousemode right "move picked models"

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 637, in <lambda>  
gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_down")  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/mouse_modes/std_modes.py", line 663, in mouse_down  
self._pick_model(pick)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/mouse_modes/std_modes.py", line 669, in _pick_model  
m = pick.drawing()  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/structure.py", line 2202, in drawing  
return self.group  
AttributeError: 'PickedPseudobond' object has no attribute 'group'  
  
AttributeError: 'PickedPseudobond' object has no attribute 'group'  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/structure.py", line 2202, in drawing  
return self.group  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-20.5.7
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,2
      Processor Name: Quad-Core Intel Core i7
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 512 KB
      L3 Cache: 8 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
      OS Loader Version: 577~129

Software:

    System Software Overview:

      System Version: macOS 13.3.1 (a) (22E772610a)
      Kernel Version: Darwin 22.4.0
      Time since boot: 16 days, 5 hours

Graphics/Displays:

    Intel Iris Plus Graphics:

      Chipset Model: Intel Iris Plus Graphics
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x8a53
      Revision ID: 0x0007
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0