| 1 | RuntimeError: ERROR:
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| 2 | Traceback (most recent call last):
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| 3 | \xa0\xa0File "C:\Program Files\ChimeraX\bin\lib\site-
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| 4 | packages\chimerax\core\toolshed\\__init__.py", line 338, in __init__
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| 5 | \xa0\xa0\xa0\xa0self.init_available_from_cache(logger)
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| 6 | \xa0\xa0File "C:\Program Files\ChimeraX\bin\lib\site-
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| 7 | packages\chimerax\core\toolshed\\__init__.py", line 445, in
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| 8 | init_available_from_cache
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| 9 | \xa0\xa0\xa0\xa0abc.load_from_cache()
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| 10 | \xa0\xa0File "C:\Program Files\ChimeraX\bin\lib\site-
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| 11 | packages\chimerax\core\toolshed\available.py", line 61, in load_from_cache
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| 12 | \xa0\xa0\xa0\xa0b = _build_bundle(d)
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| 13 | \xa0\xa0File "C:\Program Files\ChimeraX\bin\lib\site-
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| 14 | packages\chimerax\core\toolshed\available.py", line 242, in _build_bundle
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| 15 | \xa0\xa0\xa0\xa0keywords = _extract_extra_keywords(keywords)
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| 16 | \xa0\xa0File "C:\Program Files\ChimeraX\bin\lib\site-
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| 17 | packages\chimerax\core\toolshed\installed.py", line 270, in
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| 18 | _extract_extra_keywords
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| 19 | \xa0\xa0\xa0\xa0all_kwds = [k.strip() for k in kwds.split(',')]
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| 20 | AttributeError: 'list' object has no attribute 'split'
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| 21 |
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| 22 |
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| 23 | Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/
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| 24 | Processing c:\users\fagec\downloads\chimerax_isolde-1.0b2-cp36-cp36m-win_amd64.whl
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| 25 | Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.8 in c:\program files\chimerax\bin\lib\site-packages (from ChimeraX-ISOLDE==1.0b2) (0.8)
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| 26 | Requirement already satisfied, skipping upgrade: ChimeraX-Clipper>=0.3 in c:\users\fagec\appdata\local\ucsf\chimerax\0.8\site-packages (from ChimeraX-ISOLDE==1.0b2) (0.3)
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| 27 | Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=0.7 in c:\program files\chimerax\bin\lib\site-packages (from ChimeraX-ISOLDE==1.0b2) (1.0)
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| 28 | Requirement already satisfied, skipping upgrade: ChimeraX-UI>=1.0 in c:\program files\chimerax\bin\lib\site-packages (from ChimeraX-Atomic>=0.7->ChimeraX-ISOLDE==1.0b2) (1.0)
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| 29 | Installing collected packages: ChimeraX-ISOLDE
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| 30 | Found existing installation: chimerax-isolde 1.0b2
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| 31 | Uninstalling chimerax-isolde-1.0b2:
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| 32 | Successfully uninstalled chimerax-isolde-1.0b2
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| 33 | Rolling back uninstall of chimerax-isolde
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| 34 | Could not install packages due to an EnvironmentError: [WinError 5] Access is denied: 'C:\\Program Files\\ChimeraX\\bin\\Lib\\site-packages\\ChimeraX_ISOLDE-1.0b2.dist-info'
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| 35 | Consider using the `--user` option or check the permissions.
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| 36 |
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| 37 | You are using pip version 18.1, however version 19.0.3 is available.
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| 38 | You should consider upgrading via the 'python -m pip install --upgrade pip' command.
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| 39 |
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| 40 |
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| 41 | File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 872, in _run_pip
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| 42 | raise RuntimeError(s)
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| 43 |
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| 44 | See log for complete Python traceback.
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