[Chimera-users] How to color density maps using markers?

[Ahmad Khalifa]

Thanks. When I try to color a different part of the map, it removes the
first color. How can I save the colors to the map? P.s. I use atomic models
for the coloring.

On Thu, Jan 17, 2019 at 5:05 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Ahmad,
> There’s not really that many steps to it.  You just need to select the
> markers and then use the Color Zone tool.  There is a little more
> description here
> <
> http://www.rbvi.ucsf.edu/chimera/data/tutorials/volumetour/volumetour.html#colorzone
> >
>
> ...and in the Color Zone manual page:
> <
> http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/colorzone/colorzone.html
> >
>
> As mentioned in that page, you can also do it with the “scolor” command
> “zone” option.
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html#zone>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jan 17, 2019, at 9:19 AM, Ahmad Khalifa <underoath006 at gmail.com>
> wrote:
> >
> > I know I can use volume tracer to place markers in the density. There
> was a tutorial explaining the use of these markers to color certain areas
> of my density map, however I lost track of it.
> >
> > Best regards.
>
>
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