[Chimera-users] How to color density maps using markers?

[Elaine Meng]

Hi Ahmad,
There’s not really that many steps to it.  You just need to select the markers and then use the Color Zone tool.  There is a little more description here
<http://www.rbvi.ucsf.edu/chimera/data/tutorials/volumetour/volumetour.html#colorzone>

...and in the Color Zone manual page:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/colorzone/colorzone.html>

As mentioned in that page, you can also do it with the “scolor” command “zone” option.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html#zone>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jan 17, 2019, at 9:19 AM, Ahmad Khalifa <underoath006 at gmail.com> wrote:
> 
> I know I can use volume tracer to place markers in the density. There was a tutorial explaining the use of these markers to color certain areas of my density map, however I lost track of it. 
> 
> Best regards.