[chimera-dev] Chimera Error

Vishakha Kamble kamblevishakha78 at gmail.com
Sun May 2 00:06:58 PDT 2021


Thank you for the clarification.

On Sat, May 1, 2021, 8:33 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> HI Vishakha Kamble
> First thing is to try getting a newer version of Chimera.  In Chimera 1.15
> release version I can minimize 5ulp chain A with no problems -- it
> automatically removes an extra hydrogen from the VAL which is probably the
> same one causing your error.
>
> In the future if you have a Chimera error with specific data, do not
> e-mail here.  Instead use Help... Report a Bug (in the Chimera menu) and
> attach the data file or a session file so that we can actually take a look
> at it.  This bug reporting method sends information about the Chimera
> version and type of computer you are using, which is often needed to solve
> the problem. This e-mail address  is for questions about programming
> Chimera, e.g. writing code.
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On May 1, 2021, at 4:57 AM, Vishakha Kamble <kamblevishakha78 at gmail.com>
> wrote:
> >
> > Dear Sir/Madam,
> > I am facing this error while doing Minimization step on my protein.(5ULP)
> > "Correct charges are unknown for 1 non-standard atom names in otherwise
> standard residues
> >
> > Charges of 0.0 were assigned to the unknown atoms
> >
> > Details in reply log
> >
> > No MMTK name for atom "HXT" in standard residue "VAL" "
> >
> > Please could you help me solve this issue
> > Thanks & Regards
> > Vishakha Kamble
>
>
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