<div dir="auto">Thank you for the clarification. </div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, May 1, 2021, 8:33 PM Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">HI Vishakha Kamble<br>
First thing is to try getting a newer version of Chimera. In Chimera 1.15 release version I can minimize 5ulp chain A with no problems -- it automatically removes an extra hydrogen from the VAL which is probably the same one causing your error.<br>
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In the future if you have a Chimera error with specific data, do not e-mail here. Instead use Help... Report a Bug (in the Chimera menu) and attach the data file or a session file so that we can actually take a look at it. This bug reporting method sends information about the Chimera version and type of computer you are using, which is often needed to solve the problem. This e-mail address is for questions about programming Chimera, e.g. writing code.<br>
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I hope this helps,<br>
Elaine<br>
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Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On May 1, 2021, at 4:57 AM, Vishakha Kamble <<a href="mailto:kamblevishakha78@gmail.com" target="_blank" rel="noreferrer">kamblevishakha78@gmail.com</a>> wrote:<br>
> <br>
> Dear Sir/Madam,<br>
> I am facing this error while doing Minimization step on my protein.(5ULP)<br>
> "Correct charges are unknown for 1 non-standard atom names in otherwise standard residues<br>
> <br>
> Charges of 0.0 were assigned to the unknown atoms<br>
> <br>
> Details in reply log<br>
> <br>
> No MMTK name for atom "HXT" in standard residue "VAL" "<br>
> <br>
> Please could you help me solve this issue<br>
> Thanks & Regards<br>
> Vishakha Kamble<br>
<br>
</blockquote></div>