[Chimera-users] Can't open IMOD .mod file

[Luiza Mendonça]

Thank you Elaine and Tom,

Elaine, even after changing the .py and restarting chimera, the model
points won't open... But thank you for the help anyway.
Tom, I will wait for tomorrow to download ChimeraX, thanks!

Best,
Luiza


On Sat, 12 Dec 2020 at 19:11, Tom Goddard <goddard at sonic.net> wrote:

> Hi Luiza,
>
> Our newer program ChimeraX can read points from imod files.  You have to
> open it with the "contours true" option, for example,
>
>         open ~/Desktop/particles.imod contours true
>
> Documentation
>
>         https://www.rbvi.ucsf.edu/chimerax/docs/user/formats/imod.html
>
> I just tested it and it gave an error.  I fixed the code so tonight's
> ChimeraX build will be able to read IMOD points and contour lines.  The
> daily builds are below the releases on the download page
>
>         https://www.rbvi.ucsf.edu/chimerax/download.html#daily
>
>   Tom
>
>
> > On Dec 12, 2020, at 3:33 AM, Luiza Mendonça <luiza at strubi.ox.ac.uk>
> wrote:
> >
> > Good morning,
> >
> > Is it possible to open IMOD .mod file in chimera?
> > I am trying to do so, and I select the IMOD .mod file in the pop-up
> window asking about the file type, but nothing is showing up (blue initial
> chimera window unchanged), even though the log states 'finished opening
> file'.
> > My .mod file is just XYZ scattered points. Do I need to do any
> conversion before being able to open it?
> > I appreciate any help.
> >
> > Best,
> > Luiza Mendonca
> > Zhang Lab
> > University of Oxford
> > _______________________________________________
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>
>
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