[Chimera-users] box size limit

Franken, L.E. l.e.franken at rug.nl
Tue Jun 7 01:15:38 PDT 2016

Problem solved! thank you for your help.

Best wishes,

On Tue, Jun 7, 2016 at 1:26 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Linda,
> When data is larger than some specified size, it automatically shows just
> a slice.  This prevents slow response opening huge stuff, but you can
> change the setting however you like.
> You can just change the size limit, or specify that you always want to see
> the whole data.  Volume Viewer menu: "Features… Data display options”  will
> show the relevant options in the dialog.  Then you can adjust or turn
> on/off “Show data when opened…. “ and “Show plane when data larger…” as
> desired.
> <
> http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/volumeviewer.html#disp-options
> >
> <
> http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/framevolumeviewer.html
> >
> To save the settings for later uses, Volume Viewer menu: Features… Save
> default dialog settings.
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On Jun 6, 2016, at 3:08 PM, Franken, L.E. <l.e.franken at rug.nl> wrote:
> >
> > Dear chimera users,
> > I am running into troubles displaying a map of a 650x650x650 volume and
> I was wondering if there is a box size limit to chimera or what else could
> be the problem. The way it displays the 3D .mrc file is as a single slice
> rather than a volume. It will also go straight to solid display rather than
> surface, did anyone encounter such a problem before? I can open the map in
> coot and relion (slices), so I do not think that the map is corrupt. Thank
> you for your time.
> >
> > Best wishes,
> > Linda
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