[Chimera-users] modeller interface

[Eric Pettersen]

Yes, just fixed that bug.  Either you can wait for tomorrow's daily  
build, or you can edit line 247 of /Applications/Chimera.app/Contents/ 
Resources/share/MultAlignViewer/ModellerBase.py and change 'loopData'  
to 'loopInfo'. Sorry for the hassle.

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu

On Apr 19, 2012, at 2:50 PM, Sadler, Evan wrote:

> Hi,
>
> I'm trying to construct what I think should be a simple homology  
> model and it's failing as below whether I use the web server or run  
> modeller locally:
>
> Target seq: VWF_CK
> Template structures:
> 	2TGI.pdb (#0)Run locally, the Modeller binary location: /Library/ 
> modeller-9.10/bin/mod9.10
> Now, modeller is running locally...
> <type 'exceptions.UnboundLocalError'> Exception in Tk callback
>   Function: <function command at 0x17982770> (type: <type 'function'>)
>   Args: ()
> Traceback (innermost last):
>   File "/Applications/Chimera.app/Contents/Resources/lib/python2.7/ 
> site-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__
>     return apply(self.func, args)
>   File "/Applications/Chimera.app/Contents/Resources/share/chimera/ 
> baseDialog.py", line 449, in command
>     getattr(s, buttonFuncName(txt))()
>   File "/Applications/Chimera.app/Contents/Resources/share/chimera/ 
> baseDialog.py", line 700, in OK
>     self.Apply()
>   File "/Applications/Chimera.app/Contents/Resources/share/ 
> MultAlignViewer/ModellerDialog.py", line 579, in Apply
>     veryFast=self.veryFastVar.get(),  
> tempPath=self.pathTempOpt.get().strip(), **kw)
>   File "/Applications/Chimera.app/Contents/Resources/share/ 
> MultAlignViewer/ModellerBase.py", line 247, in model
>     if loopData:
> <type 'exceptions.UnboundLocalError'>: local variable 'loopData'  
> referenced before assignment
>
> UnboundLocalError: local variable 'loopData' referenced before  
> assignment
>
>   File "/Applications/Chimera.app/Contents/Resources/share/ 
> MultAlignViewer/ModellerBase.py", line 247, in model
>     if loopData:
>
> See reply log for Python traceback.
>
>
> My version of Chimera is alpha version 1.7 build 36205, running  
> under Mac 10.6.8.
>
> Do you have any advice?
>
> Thanks,
>
> Evan Sadler
> --
> J. Evan Sadler, M.D., Ph.D.
> Chief, Division of Hematology
> Department of Medicine
> Washington University
> 660 S. Euclid Ave., Box 8125
> St. Louis, MO   63110
> Tel: 314-362-9067
> FAX: 314-454-3012
> email: esadler at wustl.edu
>
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