[Chimera-users] modeller interface

Sadler, Evan ESADLER at dom.wustl.edu
Thu Apr 19 14:50:16 PDT 2012


I'm trying to construct what I think should be a simple homology model and it's failing as below whether I use the web server or run modeller locally:

Target seq: VWF_CK
Template structures:
2TGI.pdb (#0)Run locally, the Modeller binary location: /Library/modeller-9.10/bin/mod9.10
Now, modeller is running locally...
<type 'exceptions.UnboundLocalError'> Exception in Tk callback
  Function: <function command at 0x17982770> (type: <type 'function'>)
  Args: ()
Traceback (innermost last):
  File "/Applications/Chimera.app/Contents/Resources/lib/python2.7/site-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__
    return apply(self.func, args)
  File "/Applications/Chimera.app/Contents/Resources/share/chimera/baseDialog.py", line 449, in command
    getattr(s, buttonFuncName(txt))()
  File "/Applications/Chimera.app/Contents/Resources/share/chimera/baseDialog.py", line 700, in OK
  File "/Applications/Chimera.app/Contents/Resources/share/MultAlignViewer/ModellerDialog.py", line 579, in Apply
    veryFast=self.veryFastVar.get(), tempPath=self.pathTempOpt.get().strip(), **kw)
  File "/Applications/Chimera.app/Contents/Resources/share/MultAlignViewer/ModellerBase.py", line 247, in model
    if loopData:
<type 'exceptions.UnboundLocalError'>: local variable 'loopData' referenced before assignment

UnboundLocalError: local variable 'loopData' referenced before assignment

  File "/Applications/Chimera.app/Contents/Resources/share/MultAlignViewer/ModellerBase.py", line 247, in model
    if loopData:

See reply log for Python traceback.

My version of Chimera is alpha version 1.7 build 36205, running under Mac 10.6.8.

Do you have any advice?


Evan Sadler
J. Evan Sadler, M.D., Ph.D.
Chief, Division of Hematology
Department of Medicine
Washington University
660 S. Euclid Ave., Box 8125
St. Louis, MO   63110
Tel: 314-362-9067
FAX: 314-454-3012
email: esadler at wustl.edu

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